Citrus Sinensis ID: 022313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRFKS
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccccccEEEEccccccccEEEEEEEEEccccHHHHHcccccccccccccccEEEEEEEEEcccccccccccEEEEEEEEccccccHHHccccccccccccccccccccccccccccccccEEEcccEEEEccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHccccEEEEcccHHHHHHHHccccEEEEcccccccHHHHHHccccccEEEEEcccccccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEEEEccccEEEccccccccccEEcccEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccEEEEcccEEEEEcccccccEEEEEccEEEEEEcccccHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccccEcccccccEEEccccccEEEEEcccHHHHHHHHHHHccccEEEEEEccccccccccEEEEccEEEEcccc
Coil and Loop (DISEMBL)
mtsetaskdclgwaardpsgvlspysfnrravgsddvsiTITHCGVCYADVIwtrnkhgdskyplvpghEIVGIVKEVghnvsrfkvgdhvgvgtyvnscrdceycndglevhcarsvytfnaidadgtitkggysSYIVVHERYCYKiandyplalAAPLLcagitvytpmmrhkmnqpgkslgviglggLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLgadkfvvsSDLEQMKALGKSLDFIIdtasgdhpfDAYMSLLKVAGVYVLVgfpskvkfspaslnignaplfrfks
Flexible Loop (DISEMBL)
mtsetaskdclgwaardpsgvlspYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFnaidadgtitkggYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPskvkfspaslnignaplfrfks
Low Complexity Region (SEG)
MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYplalaapllcaGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRFKS
Disordered region (IsUnstruct)
*********CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR***************************AFGLNVTVL**********LSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPL*****
Disordered Region (DISOPRED)
******S***LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK***ALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR***
Disordered Region (DISEMBL)
********DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRFKS
Disordered Region (DISPRO)
****TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRFKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9CAI3	355	Probable cinnamyl alcohol	yes	no	0.966	0.814	0.782	1e-130
Q8H859	354	Probable cinnamyl alcohol	yes	no	0.983	0.830	0.724	1e-120
Q2R114	354	Putative cinnamyl alcohol	no	no	0.983	0.830	0.714	1e-118
Q40976	357	Probable cinnamyl alcohol	N/A	no	0.973	0.815	0.486	8e-83
O82035	357	Probable cinnamyl alcohol	N/A	no	0.973	0.815	0.482	4e-82
Q337Y2	366	Probable cinnamyl alcohol	no	no	0.963	0.786	0.553	6e-82
Q08350	357	Probable cinnamyl alcohol	N/A	no	0.973	0.815	0.479	1e-81
P41637	357	Probable cinnamyl alcohol	N/A	no	0.973	0.815	0.482	3e-75
O82515	359	Probable mannitol dehydro	N/A	no	0.896	0.746	0.561	5e-74
Q43137	354	Probable mannitol dehydro	N/A	no	0.913	0.771	0.536	9e-73

>sp|Q9CAI3|CADH1_ARATH Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 259/289 (89%)

Query: 2   TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS 61
           +SE+   +C+ WAARDPSG+LSP++  RR+V +DDVS+TITHCGVCYADVIW+RN+HGDS
Sbjct: 3   SSESVENECMCWAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDS 62

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
           KYPLVPGHEI GIV +VG NV RFKVGDHVGVGTYVNSCR+CEYCN+G EV+CA+ V+TF
Sbjct: 63  KYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTF 122

Query: 122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
           N ID DG++TKGGYSS+IVVHERYCYKI  DYPL  AAPLLCAGITVY PMMRH MNQPG
Sbjct: 123 NGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPG 182

Query: 182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL 241
           KSLGVIGLGGLGHMAVKFGKAFGL+VTV STS SKKEEAL+LLGA+ FV+SSD +QMKAL
Sbjct: 183 KSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKAL 242

Query: 242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
            KSLDF++DTASGDH FD YMSLLK+AG YVLVGFPS++K SPA+LN+G
Sbjct: 243 EKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNLG 291

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 5

>sp|Q8H859|CADH1_ORYSJ Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1

 Score =  431 bits (1108), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/294 (72%), Positives = 244/294 (82%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M +E  S +C  WAARDPSG+LSPY FNRRAV SDDVS+ ITHCGVCYADV WTRN   +
Sbjct: 1   MAAECGSGNCDAWAARDPSGILSPYKFNRRAVQSDDVSLRITHCGVCYADVAWTRNILNN 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YPLVPGHEI G+V EVG +V  FKVGDHVGVGTYVNSCRDCE CN  LE +C++ V+T
Sbjct: 61  SMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFT 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           FN +D DGT+TKGGYS++IVVHERYC+KI + YPL  AAPLLCAGITVY+PMMRH MNQP
Sbjct: 121 FNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GKSLGVIGLGGLGHMAVKFGKAFGL VTV+STS SK++EA+ LLGAD FVVSSD  QM+ 
Sbjct: 181 GKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQMET 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPL 294
           L  SL+FIIDTASGDHPFD Y++LLKV GV  L+ FPS++K  PA+LN+G   L
Sbjct: 241 LKSSLNFIIDTASGDHPFDPYLTLLKVGGVMALLSFPSEIKVHPANLNLGGRSL 294

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q2R114|CADH4_ORYSJ Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/294 (71%), Positives = 243/294 (82%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M +E  S +C  WAARDPSG+LSPY FNRR V S+DVS+ ITHCGVCYADVIWTRN   D
Sbjct: 1   MAAECGSGNCDAWAARDPSGILSPYKFNRREVQSEDVSLRITHCGVCYADVIWTRNMFND 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YPLVPGHEI G+V EVG +V  FKVGDHVGVG YVNSC+DCE CN  LE HC++ V T
Sbjct: 61  SIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVT 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N++D+DGT+TKGGYSS+I+VH+RYC+KI  DYPL+ AAPLLCAGITVYTPM+RH MNQP
Sbjct: 121 YNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GKSLGVIGLGGLGHMAVKFGKAFGL VTV STS SK+EEA++LLGAD FV+SSD  QM++
Sbjct: 181 GKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESKREEAINLLGADNFVISSDENQMES 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPL 294
           L  SL FIIDTASGDH FD Y+SLLKV GV VL+ FPS++K  P +LN+    L
Sbjct: 241 LKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLSFPSEIKVHPENLNLAARSL 294

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q40976|CADH_PINRA Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1

 Score =  307 bits (786), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 142/292 (48%), Positives = 202/292 (69%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M S    K   G+AARD SG LSPY++N R  G +DV + + +CG+C++D++  RN+ G 
Sbjct: 1   MGSLETEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGM 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YP+VPGHE+VGIV E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T
Sbjct: 61  SHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWT 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N ++ DGT T+GG++S +VV + +  +I  + PL  AAPLLCAG+TV++PM    M +P
Sbjct: 121 YNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK  G++GLGG+GHM VK  KAFGL+VTV+S+S  KKEEA+ +LGAD ++VS D E+M  
Sbjct: 181 GKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMME 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGN 291
             +SLD+I+DT    HP + Y++LLK  G  V++G  P  + F    L +G 
Sbjct: 241 AAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGR 292

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Pinus radiata (taxid: 3347)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|O82035|CADH2_PICAB Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1

 Score =  304 bits (779), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 141/292 (48%), Positives = 202/292 (69%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M S  + K   G+AARD SG LSPY++  R  G +DV + + +CG+C++D++   N+ G 
Sbjct: 1   MGSLESEKTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGM 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YP+VPGHE+VG+V E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T
Sbjct: 61  SNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWT 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N ++ DGT T+GG++S +VV + +  +I  + PL  AAPLLCAG+TVY+PM    M +P
Sbjct: 121 YNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK  G++GLGG+GHM VK  KAFGL+VTV+S+S  KKEEAL +LGAD ++VS D E+M+ 
Sbjct: 181 GKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQE 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGN 291
             +SLD+I+DT    HP + Y++LLK  G  V++G  P  + F    L +G 
Sbjct: 241 AAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGR 292

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Picea abies (taxid: 3329)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q337Y2|CADH3_ORYSJ Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1

 Score =  304 bits (778), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 160/289 (55%), Positives = 203/289 (70%), Gaps = 1/289 (0%)

Query: 7   SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLV 66
            +  +G AARD SG LSP++ +RR+ G DDV+I I  CG+C++D+   +N+   S YPLV
Sbjct: 13  EQQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLV 72

Query: 67  PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA 126
           PGHEI G+V EVG NV+RFK GD VGVG  VNSCR CE CN+G E HC   V+T+N++D 
Sbjct: 73  PGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDK 132

Query: 127 DGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV 186
           DGT+T GGYSS +VVHER+        PL + APLLCAGITVYTPM  H +N PGK +GV
Sbjct: 133 DGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGV 192

Query: 187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD 246
           +GLGGLGH+AVKF +AFGL VTV+S+S  KK EAL  LGAD FVVSS  E+M+A   ++D
Sbjct: 193 LGLGGLGHVAVKFARAFGLKVTVISSSPGKKREALERLGADAFVVSSSAEEMEAARSTMD 252

Query: 247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGNAPL 294
            +I+T S + P   Y++LLK  G  +LVG P   ++  P SL  GN  L
Sbjct: 253 GVINTVSANTPMAPYLALLKPNGKMILVGLPENPLEVPPFSLVHGNRTL 301

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q08350|CADH7_PICAB Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/292 (47%), Positives = 202/292 (69%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M S  + +   G+AARD SG LSPY++  R  G +DV + + +CG+C++D++   N+ G 
Sbjct: 1   MGSLESERTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGM 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YP+VPGHE+VG+V E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T
Sbjct: 61  SNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWT 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N ++ DGT T+GG++S +VV + +  +I  + PL  AAPLLCAG+TVY+PM    M +P
Sbjct: 121 YNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK  G++GLGG+GHM VK  KAFGL+VTV+S+S  KKEEAL +LGAD ++VS D E+M+ 
Sbjct: 181 GKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQE 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGN 291
             +SLD+I+DT    HP + Y++LLK  G  V++G  P  + F    L +G 
Sbjct: 241 AAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGR 292

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Picea abies (taxid: 3329)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|P41637|CADH_PINTA Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/292 (48%), Positives = 203/292 (69%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M S  + K   G+AARD SG LSPY++N R  G +DV + + +CG+C++D++  RN+ G 
Sbjct: 1   MGSLESEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGM 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YP+VPGHE+VGIV E+G  V +FKVG+HVGVG  V SCR C  CN  +E +C++ ++T
Sbjct: 61  SHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWT 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N ++ DGT T+GG++S +VV + +  +I  + PL  AAPLLCAG+TV++PM    M +P
Sbjct: 121 YNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK  G++GLGG+GH+ VK  KAFGL+VTV+S+S  KKEEA+ +LGAD ++VS D E+M  
Sbjct: 181 GKKCGILGLGGVGHLGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMME 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIGN 291
             +SLD+I+DT    HP + Y++LLK  G  V++G  P  + F    L +G 
Sbjct: 241 AAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPPLILGR 292

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Pinus taeda (taxid: 3352)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|O82515|MTDH_MEDSA Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 151/269 (56%), Positives = 194/269 (72%), Gaps = 1/269 (0%)

Query: 11  LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHE 70
            GWAARD SG LSP+ F+RR  G DDVS+ I +CGVC++D+   +N  G + YP+VPGHE
Sbjct: 14  FGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHE 73

Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
           IVG+V +VG NV +F+VGD+VGVG  V SC+ CE CN  LE +C + V+T+N+    GT 
Sbjct: 74  IVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNS-PYKGTR 132

Query: 131 TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLG 190
           T GGYS ++VVH+RY  +  ++ PL   APLLCAGITVY+PM  + M +PGK LGV GLG
Sbjct: 133 TYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLG 192

Query: 191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID 250
           GLGH+A+KFGKAFGL VTV+STS +K+ EA+  LGAD F+VS D E+MKA   ++D+IID
Sbjct: 193 GLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIID 252

Query: 251 TASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
           T S  H     + LLK+ G  V VG PSK
Sbjct: 253 TISAAHSLMPLLGLLKLNGKLVTVGLPSK 281

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Medicago sativa (taxid: 3879)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q43137|MTDH1_STYHU Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1

 Score =  273 bits (699), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 147/274 (53%), Positives = 198/274 (72%), Gaps = 1/274 (0%)

Query: 6   ASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPL 65
           AS    GWAA+D SG LSP+ F RR   +DDV++ I +CGVC++D+   +N  G + YP+
Sbjct: 2   ASSKAFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPV 61

Query: 66  VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID 125
           VPGHEI GIV +VG NV++FK GD VGVG  V+SC++CE C   LE +C + V+T+N+  
Sbjct: 62  VPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNS-P 120

Query: 126 ADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLG 185
             GT T+GGYS ++VVH+R+  +  ++ PL   APLLCAGITVY+PM  + M +PGK LG
Sbjct: 121 YKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLG 180

Query: 186 VIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL 245
           V GLGGLGH+A+KFGKAFGL VTV+S+S +K+ EA+ +LGAD F++SSD E+MKA   ++
Sbjct: 181 VAGLGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFLLSSDPEKMKAATGTM 240

Query: 246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
           D+IIDT S  H   + + LLK+ G  V VG PSK
Sbjct: 241 DYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSK 274

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Stylosanthes humilis (taxid: 35628)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
225426492	371	PREDICTED: probable cinnamyl alcohol deh	0.969	0.781	0.838	1e-135
297742485	355	unnamed protein product [Vitis vinifera]	0.969	0.816	0.838	1e-135
255555851	358	alcohol dehydrogenase, putative [Ricinus	0.969	0.810	0.804	1e-132
356549501	357	PREDICTED: probable cinnamyl alcohol deh	0.973	0.815	0.808	1e-130
268528129	355	cinnamyl alcohol dehydrogenase 5 [Gossyp	0.969	0.816	0.814	1e-130
297842013	355	hypothetical protein ARALYDRAFT_895120 [	0.966	0.814	0.795	1e-130
356554814	357	PREDICTED: probable cinnamyl alcohol deh	0.973	0.815	0.808	1e-130
15218564	355	putative cinnamyl alcohol dehydrogenase	0.966	0.814	0.782	1e-129
357446025	406	Cinnamyl alcohol dehydrogenase [Medicago	0.973	0.716	0.784	1e-128
357446027	446	Cinnamyl alcohol dehydrogenase [Medicago	0.973	0.652	0.784	1e-127

>gi|225426492|ref|XP_002277375.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like [Vitis vinifera]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/291 (83%), Positives = 267/291 (91%), Gaps = 1/291 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           MTSE+A  +CL WAARDPSG+LSPY F+RRA+GSDDVS+ ITHCGVCYADV+WTRNK GD
Sbjct: 17  MTSESADDNCLAWAARDPSGLLSPYKFSRRALGSDDVSLNITHCGVCYADVVWTRNKFGD 76

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYP+VPGHEI GIVKEVG NV RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR SV+
Sbjct: 77  SKYPVVPGHEIAGIVKEVGSNVRRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARGSVF 136

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN +D DGT+TKGGYSS+IVVHERYC+KI ++YPLA AAPLLCAGITVYTPMMRHKMNQ
Sbjct: 137 TFNGVDVDGTVTKGGYSSHIVVHERYCFKIPDNYPLASAAPLLCAGITVYTPMMRHKMNQ 196

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGVIGLGGLGH+AVKFGKAFGL VTVLSTS SKKEEAL+LLGADKFVVSSD +QM 
Sbjct: 197 PGKSLGVIGLGGLGHLAVKFGKAFGLRVTVLSTSISKKEEALNLLGADKFVVSSDEQQMM 256

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
           AL +SLDFIIDTASGDHPFD Y+SLLK AGV VLVGFPS+VKFSP S+ +G
Sbjct: 257 ALSRSLDFIIDTASGDHPFDPYLSLLKTAGVLVLVGFPSEVKFSPGSIVMG 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742485|emb|CBI34634.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/291 (83%), Positives = 267/291 (91%), Gaps = 1/291 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           MTSE+A  +CL WAARDPSG+LSPY F+RRA+GSDDVS+ ITHCGVCYADV+WTRNK GD
Sbjct: 1   MTSESADDNCLAWAARDPSGLLSPYKFSRRALGSDDVSLNITHCGVCYADVVWTRNKFGD 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYP+VPGHEI GIVKEVG NV RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR SV+
Sbjct: 61  SKYPVVPGHEIAGIVKEVGSNVRRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARGSVF 120

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN +D DGT+TKGGYSS+IVVHERYC+KI ++YPLA AAPLLCAGITVYTPMMRHKMNQ
Sbjct: 121 TFNGVDVDGTVTKGGYSSHIVVHERYCFKIPDNYPLASAAPLLCAGITVYTPMMRHKMNQ 180

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGVIGLGGLGH+AVKFGKAFGL VTVLSTS SKKEEAL+LLGADKFVVSSD +QM 
Sbjct: 181 PGKSLGVIGLGGLGHLAVKFGKAFGLRVTVLSTSISKKEEALNLLGADKFVVSSDEQQMM 240

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
           AL +SLDFIIDTASGDHPFD Y+SLLK AGV VLVGFPS+VKFSP S+ +G
Sbjct: 241 ALSRSLDFIIDTASGDHPFDPYLSLLKTAGVLVLVGFPSEVKFSPGSIVMG 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555851|ref|XP_002518961.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223541948|gb|EEF43494.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/291 (80%), Positives = 259/291 (89%), Gaps = 1/291 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M+S++  +DCL WAARDPSGVLSPY F+RRAVG DD+S+ ITHCG+CYAD IWTRNKHGD
Sbjct: 1   MSSQSVKEDCLAWAARDPSGVLSPYKFSRRAVGEDDISLKITHCGICYADFIWTRNKHGD 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYPLVPGHEIVG+VKEVG +V+RFK GD VGVGTYVNSC+DC+YCND  EV+C + SV 
Sbjct: 61  SKYPLVPGHEIVGVVKEVGSSVTRFKAGDRVGVGTYVNSCKDCDYCNDRQEVYCVKGSVL 120

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFNAID DGT+TKGGYSS++VVHERYC++I NDYP ALAAPLLCAGITVY PMMRH MNQ
Sbjct: 121 TFNAIDMDGTVTKGGYSSHLVVHERYCFRIPNDYPSALAAPLLCAGITVYNPMMRHGMNQ 180

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGK+LGVIGLGGLGHMAVKFGKAFGL VTV STS SKKEEALS+L AD FVVSSD EQMK
Sbjct: 181 PGKALGVIGLGGLGHMAVKFGKAFGLKVTVFSTSISKKEEALSVLDADNFVVSSDQEQMK 240

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
           A   SLDFI+DTASGDHPFD YMSLLK AGV VLVGFPS+VKFSPASLN+G
Sbjct: 241 AFSNSLDFIVDTASGDHPFDPYMSLLKTAGVLVLVGFPSEVKFSPASLNLG 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549501|ref|XP_003543132.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/292 (80%), Positives = 259/292 (88%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M+S+   +DCLGWAARD SGVLSPY F+RR +G++DV I ITHCGVC+ADV+WTRNKHGD
Sbjct: 1   MSSKGVGEDCLGWAARDASGVLSPYKFSRRTLGNEDVHIKITHCGVCFADVVWTRNKHGD 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYP+VPGHEI GIV +VG NV  FKVGDHVGVGTY+NSCRDCEYCNDG EVHC + SVY
Sbjct: 61  SKYPVVPGHEIAGIVTKVGANVHHFKVGDHVGVGTYINSCRDCEYCNDGQEVHCTKGSVY 120

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN +D DGTITKGGYSSYIVVHERYC+ I   YPLA AAPLLCAGITVY+PM+RHKMNQ
Sbjct: 121 TFNGVDFDGTITKGGYSSYIVVHERYCFMIPKSYPLASAAPLLCAGITVYSPMVRHKMNQ 180

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGVIGLGGLGHMAVKFGKAFGL+VTV STS SKKEEALSLLGADKFVVSS+ E+M 
Sbjct: 181 PGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMT 240

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGN 291
           AL KSLDFIIDTASGDH FD YMSLLK  GV+VLVGFPS+VKF PASLNIG+
Sbjct: 241 ALAKSLDFIIDTASGDHSFDPYMSLLKTYGVFVLVGFPSQVKFIPASLNIGS 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528129|gb|ACZ06241.1| cinnamyl alcohol dehydrogenase 5 [Gossypium hirsutum]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/291 (81%), Positives = 258/291 (88%), Gaps = 1/291 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M S+T +++CLGWAA DP+GVLSPY F+RR +GSDDVSI ITHCGVCYADVIW+RN  GD
Sbjct: 1   MDSQTKTENCLGWAATDPTGVLSPYKFSRRPLGSDDVSIKITHCGVCYADVIWSRNMFGD 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           S YPLVPGHEI GIVKEVG NV R KVGD VGVGTYVNSCR+CEYCNDG+EV C +  V 
Sbjct: 61  SIYPLVPGHEIAGIVKEVGSNVQRIKVGDLVGVGTYVNSCRNCEYCNDGVEVQCVKGPVL 120

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN ID DGT+TKGGYSS+IVVHERYC+KI N+YPLA AAPLLCAGITVYTPMMR+ MNQ
Sbjct: 121 TFNHIDIDGTVTKGGYSSHIVVHERYCFKIPNNYPLASAAPLLCAGITVYTPMMRYNMNQ 180

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGVIGLGGLGHMAVKFGKAFGL+VTVLSTS SKKEEALSLLGAD FVV+SD EQMK
Sbjct: 181 PGKSLGVIGLGGLGHMAVKFGKAFGLSVTVLSTSISKKEEALSLLGADNFVVTSDQEQMK 240

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
            L KSLDFIIDTASGDHPFD Y+SLLK AGVY LVGFPS++KFSPASLN G
Sbjct: 241 GLSKSLDFIIDTASGDHPFDPYLSLLKSAGVYALVGFPSEIKFSPASLNPG 291

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842013|ref|XP_002888888.1| hypothetical protein ARALYDRAFT_895120 [Arabidopsis lyrata subsp. lyrata] gi|297334729|gb|EFH65147.1| hypothetical protein ARALYDRAFT_895120 [Arabidopsis lyrata subsp. lyrata]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/289 (79%), Positives = 258/289 (89%)

Query: 2   TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS 61
           +SET   +C+ WAA+DPSG+LSP+ F RR+V SDDVS+ ITHCGVCYADVIWTRN+HGDS
Sbjct: 3   SSETGENECMCWAAKDPSGLLSPHKFTRRSVTSDDVSLKITHCGVCYADVIWTRNQHGDS 62

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
           KYPLVPGHEI GIV +VG NV RFKVGDHVGVGTYVNSCR+CEYCNDG EV+CA+ V+TF
Sbjct: 63  KYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNDGQEVNCAKGVFTF 122

Query: 122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
           N ID DG++TKGGYSS+IVVHERYCYKI  DYPL  AAPLLCAGITV+ PMMRH MNQPG
Sbjct: 123 NGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVFAPMMRHNMNQPG 182

Query: 182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL 241
           KSLGVIGLGGLGHMAVKFGKAFGL+VTV STS SKKEEAL+LLGA+ FV+SSD +QMKAL
Sbjct: 183 KSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKAL 242

Query: 242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
            KSLDFIIDTASGDH FD YMSLLK+AG YVLVGFPS++K SPA+LN+G
Sbjct: 243 AKSLDFIIDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNLG 291

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554814|ref|XP_003545737.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 1-like [Glycine max]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/292 (80%), Positives = 259/292 (88%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M+S+   +DCLGWAARD SGVLSPY F+RR  G++DV I ITHCGVC+ADV+WTRNKHGD
Sbjct: 1   MSSKGVGEDCLGWAARDASGVLSPYKFSRRTPGNEDVLIKITHCGVCFADVVWTRNKHGD 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYP+VPGHEI GIV +VG NV RFKVGDHVGVGTYVNSCRDCE+CND  EVHC + SV+
Sbjct: 61  SKYPVVPGHEIAGIVTKVGSNVHRFKVGDHVGVGTYVNSCRDCEHCNDREEVHCTKGSVF 120

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN +D DGTITKGGYSSYIVVHERYC+ I   Y LA AAPLLCAGITVY+PM+RHKMNQ
Sbjct: 121 TFNGVDFDGTITKGGYSSYIVVHERYCFTIPKSYALASAAPLLCAGITVYSPMVRHKMNQ 180

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGVIGLGGLGHMAVKFGKAFGL+VTV STS SKKEEALSLLGADKFVVSS+ E+M 
Sbjct: 181 PGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMT 240

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGN 291
           AL KSLDFIIDTASGDHPFD YMSLLK  GV+VLVGFPS+VKFSPASLNIG+
Sbjct: 241 ALAKSLDFIIDTASGDHPFDPYMSLLKTYGVFVLVGFPSQVKFSPASLNIGS 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218564|ref|NP_177412.1| putative cinnamyl alcohol dehydrogenase 1 [Arabidopsis thaliana] gi|75333650|sp|Q9CAI3.1|CADH1_ARATH RecName: Full=Probable cinnamyl alcohol dehydrogenase 1; Short=AtCAD1 gi|12323770|gb|AAG51850.1|AC010926_13 putative cinnamyl-alcohol dehydrogenase; 49641-51171 [Arabidopsis thaliana] gi|27311669|gb|AAO00800.1| Unknown protein [Arabidopsis thaliana] gi|31075039|gb|AAP40269.1| putative alcohol dehydrogenase [Arabidopsis thaliana] gi|31711846|gb|AAP68279.1| At1g72680 [Arabidopsis thaliana] gi|332197239|gb|AEE35360.1| putative cinnamyl alcohol dehydrogenase 1 [Arabidopsis thaliana]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 259/289 (89%)

Query: 2   TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS 61
           +SE+   +C+ WAARDPSG+LSP++  RR+V +DDVS+TITHCGVCYADVIW+RN+HGDS
Sbjct: 3   SSESVENECMCWAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDS 62

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
           KYPLVPGHEI GIV +VG NV RFKVGDHVGVGTYVNSCR+CEYCN+G EV+CA+ V+TF
Sbjct: 63  KYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTF 122

Query: 122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
           N ID DG++TKGGYSS+IVVHERYCYKI  DYPL  AAPLLCAGITVY PMMRH MNQPG
Sbjct: 123 NGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPG 182

Query: 182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL 241
           KSLGVIGLGGLGHMAVKFGKAFGL+VTV STS SKKEEAL+LLGA+ FV+SSD +QMKAL
Sbjct: 183 KSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKAL 242

Query: 242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
            KSLDF++DTASGDH FD YMSLLK+AG YVLVGFPS++K SPA+LN+G
Sbjct: 243 EKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNLG 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446025|ref|XP_003593290.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula] gi|355482338|gb|AES63541.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 255/292 (87%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M+SE   +DCL WAARD SGVLSPY FNRR +GS+DV + ITHCGVCYADVIW +NKHGD
Sbjct: 52  MSSEGVGEDCLAWAARDASGVLSPYKFNRRELGSEDVYVKITHCGVCYADVIWAKNKHGD 111

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYP+VPGHEI G+V +VG NV RFKVGDHVGVGTY+NSCR+CEYCND  EVHC + SVY
Sbjct: 112 SKYPVVPGHEIAGVVAKVGPNVQRFKVGDHVGVGTYINSCRECEYCNDRFEVHCVKGSVY 171

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN +D DGTITKGGYS+ IVVHERYC+ I   YPLA A PLLCAGITVY+PM+RH MNQ
Sbjct: 172 TFNGVDYDGTITKGGYSTSIVVHERYCFLIPKSYPLASAGPLLCAGITVYSPMIRHNMNQ 231

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGV+GLGGLGHMAVKFGKAFGL VTV STS SKKEEALSLLGAD+FVVSS+ E M+
Sbjct: 232 PGKSLGVVGLGGLGHMAVKFGKAFGLRVTVFSTSMSKKEEALSLLGADQFVVSSNQEDMR 291

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGN 291
           AL KSLDFIIDTASGDH FD YMSLLK++GV VLVGFPS+VKFSPASLN+G+
Sbjct: 292 ALAKSLDFIIDTASGDHLFDPYMSLLKISGVLVLVGFPSEVKFSPASLNLGS 343

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446027|ref|XP_003593291.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula] gi|355482339|gb|AES63542.1| Cinnamyl alcohol dehydrogenase [Medicago truncatula]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 255/292 (87%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M+SE   +DCL WAARD SGVLSPY FNRR +GS+DV + ITHCGVCYADVIW +NKHGD
Sbjct: 92  MSSEGVGEDCLAWAARDASGVLSPYKFNRRELGSEDVYVKITHCGVCYADVIWAKNKHGD 151

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVY 119
           SKYP+VPGHEI G+V +VG NV RFKVGDHVGVGTY+NSCR+CEYCND  EVHC + SVY
Sbjct: 152 SKYPVVPGHEIAGVVAKVGPNVQRFKVGDHVGVGTYINSCRECEYCNDRFEVHCVKGSVY 211

Query: 120 TFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           TFN +D DGTITKGGYS+ IVVHERYC+ I   YPLA A PLLCAGITVY+PM+RH MNQ
Sbjct: 212 TFNGVDYDGTITKGGYSTSIVVHERYCFLIPKSYPLASAGPLLCAGITVYSPMIRHNMNQ 271

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGKSLGV+GLGGLGHMAVKFGKAFGL VTV STS SKKEEALSLLGAD+FVVSS+ E M+
Sbjct: 272 PGKSLGVVGLGGLGHMAVKFGKAFGLRVTVFSTSMSKKEEALSLLGADQFVVSSNQEDMR 331

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGN 291
           AL KSLDFIIDTASGDH FD YMSLLK++GV VLVGFPS+VKFSPASLN+G+
Sbjct: 332 ALAKSLDFIIDTASGDHLFDPYMSLLKISGVLVLVGFPSEVKFSPASLNLGS 383

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2030210	355	CAD1 "cinnamyl-alcohol dehydro	0.966	0.814	0.750	4.6e-121
TAIR|locus:2136278	360	CAD9 "cinnamyl alcohol dehydro	0.896	0.744	0.503	4.4e-68
TAIR|locus:2052516	376	CAD2 "cinnamyl alcohol dehydro	0.933	0.742	0.496	5.6e-68
TAIR|locus:2052494	375	CAD3 "cinnamyl alcohol dehydro	0.896	0.714	0.501	5.6e-68
TAIR|locus:2120968	363	CAD6 "cinnamyl alcohol dehydro	0.949	0.782	0.463	8.2e-67
TAIR|locus:2005527	357	ELI3-1 "elicitor-activated gen	0.906	0.759	0.483	1.3e-66
TAIR|locus:2005528	359	ELI3-2 "elicitor-activated gen	0.906	0.754	0.479	1.2e-65
TAIR|locus:2090704	365	ATCAD4 [Arabidopsis thaliana (	0.909	0.745	0.463	2e-65
TAIR|locus:2124311	357	CAD5 "cinnamyl alcohol dehydro	0.953	0.798	0.440	2.9e-64
UNIPROTKB|Q0JA75	379	CAD7 "Cinnamyl alcohol dehydro	0.963	0.759	0.437	3.7e-64

TAIR|locus:2030210 CAD1 "cinnamyl-alcohol dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 217/289 (75%), Positives = 250/289 (86%)

Query:     2 TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS 61
             +SE+   +C+ WAARDPSG+LSP++  RR+V +DDVS+TITHCGVCYADVIW+RN+HGDS
Sbjct:     3 SSESVENECMCWAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDS 62

Query:    62 KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
             KYPLVPGHEI GIV +VG NV RFKVGDHVGVGTYVNSCR+CEYCN+G EV+CA+ V+TF
Sbjct:    63 KYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTF 122

Query:   122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPG 181
             N ID DG++TKGGYSS+IVVHERYCYKI  DY           GITVY PMMRH MNQPG
Sbjct:   123 NGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPG 182

Query:   182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL 241
             KSLGVIGLGGLGHMAVKFGKAFGL+VTV STS SKKEEAL+LLGA+ FV+SSD +QMKAL
Sbjct:   183 KSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKAL 242

Query:   242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
              KSLDF++DTASGDH FD YMSLLK+AG YVLVGFPS++K SPA+LN+G
Sbjct:   243 EKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNLG 291

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IEP;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2136278 CAD9 "cinnamyl alcohol dehydrogenase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 135/268 (50%), Positives = 179/268 (66%)

Query:    12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
             GW ARD SGVLSP+ F+RR  G +DV++ I  CGVC+ D+   +N  G S YP+VPGHEI
Sbjct:    15 GWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEI 74

Query:    72 VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTIT 131
             VGI  +VG NV++FK GD VGVG    SC+ CE C+  LE +C +  +T+NAI +DGT  
Sbjct:    75 VGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKN 134

Query:   132 KGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGG 191
              GGYS  IVV +R+  +   +            GITVY+PM  + M + GK LGV GLGG
Sbjct:   135 YGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGG 194

Query:   192 LGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDT 251
             LGH+AVK GKAFGL VTV+S+S++K EEA++ LGAD F+V++D ++MKA   ++D+IIDT
Sbjct:   195 LGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDT 254

Query:   252 ASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
              S  H     + LLKV G  + +G P K
Sbjct:   255 ISAVHALYPLLGLLKVNGKLIALGLPEK 282

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2052516 CAD2 "cinnamyl alcohol dehydrogenase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 140/282 (49%), Positives = 184/282 (65%)

Query:    12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
             GWAA D SGVLSP+ F+RR  G +DV++ I  CGVC++D+   +N  G S+YP++PGHEI
Sbjct:     9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEI 68

Query:    72 VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI- 130
             VGI  +VG NV++FK GD VGVG  + SC+ CE CN  LE +C + V+T+N+  +DGT  
Sbjct:    69 VGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSR 128

Query:   131 TKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMN-QPGKSLGVIGL 189
              +GGYS  IVV  R+   I +             GITVY+PM  + M  + GK LGV GL
Sbjct:   129 NQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGL 188

Query:   190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII 249
             GGLGH+AVK GKAFGL VTV+S S+ K+ EA+  LGAD F+V++D ++MK    ++DFII
Sbjct:   189 GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFII 248

Query:   250 DTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIG 290
             DT S +H      SLLKV G  V +G P K    P  SL +G
Sbjct:   249 DTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLG 290

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

TAIR|locus:2052494 CAD3 "cinnamyl alcohol dehydrogenase homolog 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 135/269 (50%), Positives = 179/269 (66%)

Query:    12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
             GWAA D SGVLSP+ F+RR  G +DV++ I  CGVC++D+   +N  G S+YP++PGHEI
Sbjct:     9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEI 68

Query:    72 VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTIT 131
             VGI  +VG NV++FK GD VGVG  + SC+ CE CN  LE +C + V+T+N+  +DGT  
Sbjct:    69 VGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRN 128

Query:   132 KGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMN-QPGKSLGVIGLG 190
             +GGYS  IVV  R+   I +             GITVY+PM  + M  + GK LGV GLG
Sbjct:   129 QGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLG 188

Query:   191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID 250
             GLGH+AVK GKAFGL VTV+S S+ K+ EA+  LGAD F+V++D ++MK    ++DFIID
Sbjct:   189 GLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIID 248

Query:   251 TASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
             T S +H      SLLKV+G  V +G   K
Sbjct:   249 TVSAEHALLPLFSLLKVSGKLVALGLLEK 277

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

TAIR|locus:2120968 CAD6 "cinnamyl alcohol dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 132/285 (46%), Positives = 183/285 (64%)

Query:     7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLV 66
             S +  GWAARD SG LSP+ F+RR  G ++V + + +CG+C++D+   +N+   S YPLV
Sbjct:    11 SVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLV 70

Query:    67 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA 126
             PGHEI+G V E+G+ VS+F +GD VGVG  V+SCR CE C +  E +C +++ T+N +  
Sbjct:    71 PGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHH 130

Query:   127 DGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
             DGTI  GGYS +IVV ERY  KI +             GI++Y+PM    +  P K +G+
Sbjct:   131 DGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGI 190

Query:   187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD 246
             +GLGGLGH+ V+F KAFG  VTV+S++T K ++AL  LGAD F+VS+D +QMKA   ++D
Sbjct:   191 VGLGGLGHIGVRFAKAFGTKVTVVSSTTGKSKDALDTLGADGFLVSTDEDQMKAAMGTMD 250

Query:   247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIG 290
              IIDT S  H     + LLK  G  VL+G   K    S  SL +G
Sbjct:   251 GIIDTVSASHSISPLIGLLKSNGKLVLLGATEKPFDISAFSLILG 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2005527 ELI3-1 "elicitor-activated gene 3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 132/273 (48%), Positives = 180/273 (65%)

Query:     8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
             K+  G AA+D SG+LSP+SF+RRA G  DV   +  CG+C+ D+   +N+ G + YPLVP
Sbjct:     7 KEAFGLAAKDESGILSPFSFSRRATGEKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVP 66

Query:    68 GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDAD 127
             GHEIVG+V EVG  V +F  GD VGVG    SCR C+ CNDG E +C + + T  A + D
Sbjct:    67 GHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFD 126

Query:   128 GTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVI 187
              T+T GGYS ++V  E +  +I ++            G+TVY+PM  H +++PG  +GV+
Sbjct:   127 DTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVV 186

Query:   188 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK-ALGKSLD 246
             GLGGLGH+AVKF KA G  VTV+STS  K++EA++ LGAD F+VS D +QMK A+G ++D
Sbjct:   187 GLGGLGHVAVKFAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMG-TMD 245

Query:   247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
              IIDT S  HP    + LLK  G  V+VG P++
Sbjct:   246 GIIDTVSATHPLLPLLGLLKNKGKLVMVGAPAE 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2005528 ELI3-2 "elicitor-activated gene 3-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 131/273 (47%), Positives = 179/273 (65%)

Query:     8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
             K+  G AA+D SGVLSP+SF RR  G  DV   +  CG+C++D+   +N+ G S YPLVP
Sbjct:     7 KEAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVP 66

Query:    68 GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDAD 127
             GHEIVG+V EVG  V++FK G+ VGVG  V+SC  C+ C +G+E +C +S+ T+     D
Sbjct:    67 GHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYD 126

Query:   128 GTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVI 187
              TIT GGYS ++V  E +  +I ++            GITVY+PM  H +++PG  +GV+
Sbjct:   127 NTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVV 186

Query:   188 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK-ALGKSLD 246
             GLGGLGH+ VKF KA G  VTV+STS  K++EA++ LGAD F+VS D +Q+K A+G ++D
Sbjct:   187 GLGGLGHVGVKFAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMG-TMD 245

Query:   247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
              IIDT S  H     + LLK  G  V+VG P K
Sbjct:   246 GIIDTVSATHSLLPLLGLLKHKGKLVMVGAPEK 278

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046029 "mannitol dehydrogenase activity" evidence=IDA

GO:0047681 "aryl-alcohol dehydrogenase (NADP+) activity" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2090704 ATCAD4 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 126/272 (46%), Positives = 176/272 (64%)

Query:     4 ETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKY 63
             E   K  LGWAARDPSGVLSPYS+  R+ G+DDV I +  CG+C+ D+   +N  G S Y
Sbjct:     5 EAGEKKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVICCGICHTDIHQIKNDLGMSNY 64

Query:    64 PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNA 123
             P+VPGHE+VG V EVG +VS+F VGD VGVG  V  C  C+ C+  LE +C + ++++N 
Sbjct:    65 PMVPGHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYND 124

Query:   124 IDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKS 183
             +  DG  T+GG++  ++V++++  KI               G+TVY+P+    +   G  
Sbjct:   125 VYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLK 184

Query:   184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGK 243
              G++GLGG+GHM VK  KA G +VTV+S+S  KKEEA+  LGAD +VVSSD  +M+ L  
Sbjct:   185 GGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSSDPAEMQRLAD 244

Query:   244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG 275
             SLD+IIDT    HP D Y++ LK+ G  +L+G
Sbjct:   245 SLDYIIDTVPVFHPLDPYLACLKLDGKLILMG 276

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA;IMP

GO:0009809 "lignin biosynthetic process" evidence=IGI;TAS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2124311 CAD5 "cinnamyl alcohol dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 126/286 (44%), Positives = 179/286 (62%)

Query:     6 ASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPL 65
             A +   GWAARDPSG+LSPY++  R  G +DV+I I  CG+C+ D+  T+N  G S YP+
Sbjct:     6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM 65

Query:    66 VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID 125
             VPGHE+VG V EVG +VS+F VGD VGVG  V  C  C  C   LE +C + ++++N + 
Sbjct:    66 VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVY 125

Query:   126 ADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLG 185
              +G  T+GG++   VVH+++  KI               G+TVY+P+    + QPG   G
Sbjct:   126 INGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGG 185

Query:   186 VIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL 245
             ++GLGG+GHM VK  KA G +VTV+S+S  K+EEAL  LGAD +V+ SD  +M  L  SL
Sbjct:   186 ILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSL 245

Query:   246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIG 290
             D++IDT    H  + Y+SLLK+ G  +L+G   + ++F    L +G
Sbjct:   246 DYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLG 291

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA;IMP

GO:0009809 "lignin biosynthetic process" evidence=IGI;IMP;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q0JA75 CAD7 "Cinnamyl alcohol dehydrogenase 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 130/297 (43%), Positives = 186/297 (62%)

Query:     7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLV 66
             ++  +G AA D SG L+P   +RR  G DDV+I + +CG+C++D+   +N+  ++ YP+V
Sbjct:    20 TRKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVV 79

Query:    67 PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSV-YTFNAID 125
              GHEI G+V EVG NV+RFK GD VGVG  VN+C  CE C DG E +C+  V +T+N++D
Sbjct:    80 AGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVD 139

Query:   126 ADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXX--------XGITVYTPMMRHKM 177
              DGT T GGYS  +VV +R+  +  +                     G+TVY PM +H +
Sbjct:   140 RDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGL 199

Query:   178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ 237
              + GK +GV+GLGGLGH+AVKF +AFG+ VTV+STS  K++EAL  LGAD F+VS++  +
Sbjct:   200 CEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASE 259

Query:   238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPL 294
             MKA   ++  II+TAS      +Y++LLK  G  +LVG P K    P    +G   +
Sbjct:   260 MKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKI 316

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2R114	CADH4_ORYSJ	1, ., 1, ., 1, ., 1, 9, 5	0.7142	0.9832	0.8305	no	no
Q8H859	CADH1_ORYSJ	1, ., 1, ., 1, ., 1, 9, 5	0.7244	0.9832	0.8305	yes	no
Q9CAI3	CADH1_ARATH	1, ., 1, ., 1, ., 1, 9, 5	0.7820	0.9665	0.8140	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000463001 SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (355 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-146
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-117
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	1e-107
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	1e-98
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-90
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	3e-86
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	7e-58
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-56
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-54
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-47
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-42
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	7e-40
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	3e-39
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	3e-38
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	3e-33
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	4e-31
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	8e-31
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-30
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	4e-30
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	5e-30
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-29
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-29
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	3e-29
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	4e-29
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	1e-28
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-28
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	5e-28
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	5e-28
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	8e-28
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-27
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	4e-27
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	6e-27
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-26
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	4e-26
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-25
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	4e-25
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-24
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	3e-23
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	8e-23
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-21
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-21
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	6e-21
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-20
cd05281	341	cd05281, TDH, Threonine dehydrogenase	3e-18
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	3e-18
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	4e-18
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	5e-18
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-17
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-17
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	4e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	6e-17
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	1e-16
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-16
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	3e-16
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	4e-16
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	5e-16
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	5e-16
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	6e-16
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-15
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-15
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	4e-15
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	5e-15
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	7e-15
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	7e-15
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-14
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	5e-14
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	9e-14
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	2e-13
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	3e-13
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-13
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	5e-13
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	7e-13
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	9e-13
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-12
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	3e-12
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	5e-12
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	7e-12
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	1e-11
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	2e-11
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	3e-11
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	4e-11
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	4e-11
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	8e-11
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	1e-10
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	2e-10
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-10
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	4e-10
smart00829	287	smart00829, PKS_ER, Enoylreductase	4e-10
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	7e-10
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	8e-10
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	1e-09
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	2e-09
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	7e-09
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	7e-09
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	8e-09
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-08
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	6e-08
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	8e-08
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	8e-08
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-07
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	7e-07
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-06
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	6e-06
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	1e-05
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-05
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	3e-05
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	7e-05
TIGR01202	308	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter	2e-04
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-04
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	5e-04
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	7e-04
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	0.001
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	0.001
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	0.001
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	0.002
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	0.002
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	0.003
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	0.003
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	0.003

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  413 bits (1065), Expect = e-146
 Identities = 155/277 (55%), Positives = 191/277 (68%), Gaps = 3/277 (1%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
           G+AARD SG L P++F RR +G DDV I IT+CGVC++D+   RN+ G +KYPLVPGHEI
Sbjct: 2   GYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEI 61

Query: 72  VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTIT 131
           VGIV  VG  V++FKVGD VGVG  V+SC  CE C  G E +C + V T+N    DGTIT
Sbjct: 62  VGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTIT 121

Query: 132 KGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGG 191
           +GGY+ +IVV ER+ +KI      A AAPLLCAGITVY+P+ R+ +  PGK +GV+G+GG
Sbjct: 122 QGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGV-GPGKRVGVVGIGG 180

Query: 192 LGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDT 251
           LGH+AVKF KA G  VT  S S SKKE+AL  LGAD+F+ + D E MK    SLD IIDT
Sbjct: 181 LGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGADEFIATKDPEAMKKAAGSLDLIIDT 239

Query: 252 ASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASL 287
            S  H  D Y+SLLK  G  VLVG P + +   P  L
Sbjct: 240 VSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPL 276

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score =  340 bits (874), Expect = e-117
 Identities = 145/269 (53%), Positives = 196/269 (72%)

Query: 11  LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHE 70
            GWAARDPSGVLSP+ F+RR  G +DV++ I +CGVC++D+   +N+ G ++YP+VPGHE
Sbjct: 14  FGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHE 73

Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
           IVGIV ++G NV +FK GD VGVG  V SC+ CE C+  LE +C + ++T+N+I  DGT 
Sbjct: 74  IVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK 133

Query: 131 TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLG 190
             GGYS  IVV + +  +  ++ PL   APLLCAGITVY+PM  + M +PGK LGV GLG
Sbjct: 134 NYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLG 193

Query: 191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID 250
           GLGH+AVK GKAFGL VTV+S+S++K++EA++ LGAD F+VS+D E+MKA   ++D+IID
Sbjct: 194 GLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIID 253

Query: 251 TASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
           T S  H     + LLKV G  + +G P K
Sbjct: 254 TVSAVHALGPLLGLLKVNGKLITLGLPEK 282

Length = 360

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score =  315 bits (809), Expect = e-107
 Identities = 133/275 (48%), Positives = 182/275 (66%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M S  A K   GWAARDPSG LSPY++  R  G +DV I + +CG+C+ D+   +N  G 
Sbjct: 1   MGSLEAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YP+VPGHE+VG V EVG +VS+F VGD VGVG  V  C +C  C   LE +C + +++
Sbjct: 61  SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWS 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N +  DG  T+GG++S +VV +++  KI        AAPLLCAG+TVY+P+    + Q 
Sbjct: 121 YNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQS 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           G   G++GLGG+GHM VK  KA G +VTV+S+S  K+EEAL  LGAD ++VSSD  +M+ 
Sbjct: 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG 275
              SLD+IIDT    HP + Y+SLLK+ G  +L+G
Sbjct: 241 AADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMG 275

Length = 357

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score =  294 bits (754), Expect = 1e-98
 Identities = 143/270 (52%), Positives = 187/270 (69%), Gaps = 1/270 (0%)

Query: 11  LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHE 70
            GWAA D SGVLSP+ F+RR  G +DV++ I  CGVC++D+   +N  G S+YP++PGHE
Sbjct: 8   FGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHE 67

Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
           IVGI  +VG NV++FK GD VGVG  + SC+ CE CN  LE +C + V+T+N+  +DGT 
Sbjct: 68  IVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTR 127

Query: 131 TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM-NQPGKSLGVIGL 189
            +GGYS  IVV  R+   I +  P    APLLCAGITVY+PM  + M  + GK LGV GL
Sbjct: 128 NQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGL 187

Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII 249
           GGLGH+AVK GKAFGL VTV+S S+ K+ EA+  LGAD F+V++D ++MK    ++DFII
Sbjct: 188 GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFII 247

Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
           DT S +H      SLLKV+G  V +G P K
Sbjct: 248 DTVSAEHALLPLFSLLKVSGKLVALGLPEK 277

Length = 375

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  272 bits (697), Expect = 2e-90
 Identities = 110/266 (41%), Positives = 139/266 (52%), Gaps = 10/266 (3%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
               +     L          G  +V I +  CGVC+ D+   +      K PL+PGHEI
Sbjct: 6   AAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEI 65

Query: 72  VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTIT 131
           VG V EVG  V+  KVGD VGVG  V SC +CEYC  G E  C     T       G  T
Sbjct: 66  VGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT-------GYTT 118

Query: 132 KGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGG 191
            GGY+ Y+VV  RY  KI     LA AAPLLCAGIT Y  + +    +PGK + V+G GG
Sbjct: 119 DGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKAN-VKPGKWVAVVGAGG 177

Query: 192 LGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDT 251
           LGHMAV++ KA G  V  ++ S  K E A   LGAD  + SSD + ++A+ +  D IIDT
Sbjct: 178 LGHMAVQYAKAMGAEVIAITRSEEKLELAKK-LGADHVINSSDSDALEAVKEIADAIIDT 236

Query: 252 ASGDHPFDAYMSLLKVAGVYVLVGFP 277
             G    +  +  L+  G  VLVG P
Sbjct: 237 V-GPATLEPSLKALRRGGTLVLVGLP 261

Length = 339

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  261 bits (668), Expect = 3e-86
 Identities = 116/278 (41%), Positives = 147/278 (52%), Gaps = 11/278 (3%)

Query: 13  WAARDPS--GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHE 70
            AA   +  G L P        G  +V I I  CGVC+ D+       G SKYPLVPGHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
           IVG V EVG  V   KVGD VGVG  V SC  CEYC  GLE  C ++V T       G  
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNT-------GYT 113

Query: 131 TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLG 190
           T+GGY+ Y+V    Y   + +  PLA AAPLLCAGITVY+  +R    +PG+ + V+G+G
Sbjct: 114 TQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSA-LRDAGPRPGERVAVLGIG 172

Query: 191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID 250
           GLGH+AV++ +A G     ++ S  K+E A   LGAD+ V S      +A     D I+ 
Sbjct: 173 GLGHLAVQYARAMGFETVAITRSPDKRELARK-LGADEVVDSGAELDEQAAAGGADVILV 231

Query: 251 TASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLN 288
           T       +A +  L+  G  VLVG P    FSP    
Sbjct: 232 TVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFP 269

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  188 bits (480), Expect = 7e-58
 Identities = 92/264 (34%), Positives = 125/264 (47%), Gaps = 23/264 (8%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           G  +V + +   GVC+ D+       GD     K PL+ GHE  G+V  VG  VS  KVG
Sbjct: 25  GPGEVLVKLEASGVCHTDL---HAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVG 81

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D VGV    ++C  CEYC  G E  C     +      DGT     ++ Y +   RY   
Sbjct: 82  DRVGVKWLYDACGKCEYCRTGDETLCPNQKNS--GYTVDGT-----FAEYAIADARYVTP 134

Query: 149 IANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGG-LGHMAVKFGKAFGLNV 207
           I +      AAPLLCAG+TVY  + +  + +PG  + + G GG LGH+ V++ KA GL V
Sbjct: 135 IPDGLSFEQAAPLLCAGVTVYKALKKAGL-KPGDWVVISGAGGGLGHLGVQYAKAMGLRV 193

Query: 208 TVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL--GKSLDFIIDTASGDHPFDAYM 262
             +     K E A   LGAD FV    S D+E +K L  G     ++ TA     ++  +
Sbjct: 194 IAIDVGDEKLELAKE-LGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQAL 252

Query: 263 SLLKVAGVYVLVGFPSKVKFSPAS 286
             L+  G  V VG P    F P  
Sbjct: 253 DYLRPGGTLVCVGLPPG-GFIPLD 275

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  185 bits (471), Expect = 1e-56
 Identities = 92/249 (36%), Positives = 121/249 (48%), Gaps = 26/249 (10%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKH---GD---SKYPLVPGHEIVGIVKEVGHNVSRFK 86
           G  +V I +  CGVC  D+      H   GD    K PL+PGHEIVG V+ VG  V+RF 
Sbjct: 28  GPGEVLIKVEACGVCRTDL------HIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRFS 81

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
           VGD VGV    ++C +C YC  G E  C  + +T   +D       GGY+ Y+V  ER+ 
Sbjct: 82  VGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVD-------GGYAEYMVADERFA 134

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
           Y I  DY    AAPLLCAGI  Y  +      +PG+ LG+ G G   H+A++  +  G  
Sbjct: 135 YPIPEDYDDEEAAPLLCAGIIGYRALKLAG-LKPGQRLGLYGFGASAHLALQIARYQGAE 193

Query: 207 VTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLK 266
           V   + S   +E A   LGAD +   SD        + LD  I  A       A +  +K
Sbjct: 194 VFAFTRSGEHQELARE-LGAD-WAGDSDDL----PPEPLDAAIIFAPVGALVPAALRAVK 247

Query: 267 VAGVYVLVG 275
             G  VL G
Sbjct: 248 KGGRVVLAG 256

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  178 bits (455), Expect = 3e-54
 Identities = 90/262 (34%), Positives = 129/262 (49%), Gaps = 14/262 (5%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
           G  +V I +  CGVC++D            YP VPGHE+VG +  VG  VSR+KVGD VG
Sbjct: 24  GPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVG 83

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND 152
           VG +   C  C+ C  G  VHC     T       G    GGY+ Y++       +I +D
Sbjct: 84  VGWHGGHCGTCDACRRGDFVHCENGKVT-------GVTRDGGYAEYMLAPAEALARIPDD 136

Query: 153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLST 212
              A AAPLLCAG+T +   +R+   +PG  + V G+GGLGH+AV++    G     +S 
Sbjct: 137 LDAAEAAPLLCAGVTTFNA-LRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISR 195

Query: 213 STSKKEEALSLLGADKFVVSSDLEQMKALGKSL---DFIIDTASGDHPFDAYMSLLKVAG 269
            + K + A   LGA  ++ +S  +  +AL + L     I+ TA       A +  L   G
Sbjct: 196 GSDKADLARK-LGAHHYIDTSKEDVAEAL-QELGGAKLILATAPNAKAISALVGGLAPRG 253

Query: 270 VYVLVG-FPSKVKFSPASLNIG 290
             +++G     V  SP  L +G
Sbjct: 254 KLLILGAAGEPVAVSPLQLIMG 275

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  159 bits (404), Expect = 2e-47
 Identities = 73/249 (29%), Positives = 103/249 (41%), Gaps = 18/249 (7%)

Query: 36  DVSITITHCGVCYADV-IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           +V + +   G+C  D+ I         K PL+ GHE  G+V EVG  V+  KVGD V V 
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
             +  C  CE C +                        GG++ Y+VV       + +   
Sbjct: 61  PNL-GCGTCELCRELCPGGGILGEGLD-----------GGFAEYVVVPADNLVPLPDGLS 108

Query: 155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST 214
           L  AA L     T Y  + R  + +PG ++ V+G GG+G +A +  KA G  V V   S 
Sbjct: 109 LEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168

Query: 215 SKKEEALSLLGADKFVVSSD----LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGV 270
            K E A   LGAD  +   +     E     G   D +ID   G       + LL+  G 
Sbjct: 169 EKLELAKE-LGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGR 227

Query: 271 YVLVGFPSK 279
            V+VG  S 
Sbjct: 228 IVVVGGTSG 236

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  148 bits (377), Expect = 1e-42
 Identities = 87/256 (33%), Positives = 122/256 (47%), Gaps = 22/256 (8%)

Query: 32  VGSDDVSITITHCGVCYADV-IW--TRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
            G   V + +   GVC++D+ +           K P   GHE  G V+EVG  V   K G
Sbjct: 23  PGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEG 82

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D V V      C  C YC  G E +C  +   F  I  D     GG++ Y++V  R   K
Sbjct: 83  DPVVVHPPW-GCGTCRYCRRGEENYCENA--RFPGIGTD-----GGFAEYLLVPSRRLVK 134

Query: 149 IANDYPLALAAPLLCAGITVYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNV 207
           +        AAPL  AG+T Y  + +      PG ++ VIG+GGLGH+AV+  +A     
Sbjct: 135 LPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALT-PA 193

Query: 208 TVLSTSTSKKEEALSL---LGADKFVVSSD--LEQMKAL--GKSLDFIIDTASGDHPFDA 260
           TV++   S  EEAL L   LGAD  + +SD  +E+++ L  G+  D +ID    D     
Sbjct: 194 TVIAVDRS--EEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSDETLAL 251

Query: 261 YMSLLKVAGVYVLVGF 276
              LL   G YV+VG+
Sbjct: 252 AAKLLAKGGRYVIVGY 267

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  141 bits (359), Expect = 7e-40
 Identities = 88/259 (33%), Positives = 122/259 (47%), Gaps = 28/259 (10%)

Query: 35  DDVSITITHCGVCYADV-IW-------TRNKHGDS----KYPLVPGHEIVGIVKEVGHNV 82
            +V + +T CGVC++D+ IW                   K PLV GHEIVG V  VG + 
Sbjct: 26  TEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDA 85

Query: 83  SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV- 141
           +  KVGD V V  ++  C +C  C  G E  CA+         A G    GGY+ Y++V 
Sbjct: 86  ADVKVGDKVLVYPWI-GCGECPVCLAGDENLCAKGR-------ALGIFQDGGYAEYVIVP 137

Query: 142 HERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGK 201
           H RY          ALAA L C+G+T Y+ + +       + + +IG GGLG MA+   K
Sbjct: 138 HSRYLVDPGG-LDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLK 196

Query: 202 AFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ----MKALGKSLDFIIDTASGDH 256
           A G  N+ V+    +K E A +  GAD  V  SD +     +KA G  +D +ID  +   
Sbjct: 197 ALGPANIIVVDIDEAKLEAAKA-AGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSA 255

Query: 257 PFDAYMSLLKVAGVYVLVG 275
                  +L   G  VLVG
Sbjct: 256 TASLAFDILAKGGKLVLVG 274

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  140 bits (354), Expect = 3e-39
 Identities = 85/249 (34%), Positives = 113/249 (45%), Gaps = 14/249 (5%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G  +V + +   GVC++D+ I        +K PL  GHEI G V EVG  V+ FKVGD V
Sbjct: 25  GPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRV 84

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
            V   V  C  C  C  G    C         ID       GG++ YIVV  R    + +
Sbjct: 85  AV-PAVIPCGACALCRRGRGNLCLNQGMPGLGID-------GGFAEYIVVPARALVPVPD 136

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS 211
             P A AA    A +T Y  ++R    +PG+++ VIGLGGLG  AV+  KA G  V  + 
Sbjct: 137 GVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVD 196

Query: 212 TSTSKKEEALSLLGADKFV----VSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKV 267
               K E A   LGAD+ +     S   ++   LG   D I D       F+     +K 
Sbjct: 197 IKEEKLELAKE-LGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKP 255

Query: 268 AGVYVLVGF 276
            G  V+VG 
Sbjct: 256 GGRIVVVGL 264

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  137 bits (347), Expect = 3e-38
 Identities = 87/262 (33%), Positives = 120/262 (45%), Gaps = 17/262 (6%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
             G  +V I +   GVCY D+++ +      KYPL+ GHEIVG V+EVG  V RFK GD 
Sbjct: 22  EPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGDR 81

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHC-ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
           V +  Y+  C  CEYC  G E  C  R+ Y        G    GG++ Y+ V ER   K+
Sbjct: 82  VILYYYI-PCGKCEYCLSGEENLCRNRAEY--------GEEVDGGFAEYVKVPERSLVKL 132

Query: 150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV 209
            ++     AA   C   T    + R  + +    L     GG+G  A++  KA G  V  
Sbjct: 133 PDNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIA 192

Query: 210 LSTSTSKKEEALSLLGADKFVVSSDL-EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVA 268
           ++ S  K +  L  LGAD  +  S   E +K LG   D +I+   G    +  +  L   
Sbjct: 193 VTRSPEKLKI-LKELGADYVIDGSKFSEDVKKLG-GADVVIELV-GSPTIEESLRSLNKG 249

Query: 269 GVYVLVGFPSKVKFSPASLNIG 290
           G  VL+G    V   PA L  G
Sbjct: 250 GRLVLIGN---VTPDPAPLRPG 268

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  125 bits (315), Expect = 3e-33
 Identities = 72/283 (25%), Positives = 108/283 (38%), Gaps = 36/283 (12%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
            + +V + IT  GVC+ D   T +      +P V GHE  GIV+ VG  V+  K GDHV 
Sbjct: 26  RAGEVLVRITATGVCHTDAH-TLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHV- 83

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA----DGTIT-------------KGGY 135
           +  +   C  C++C  G    C                DGT                  +
Sbjct: 84  ILLFTPECGQCKFCLSGKPNLC---EAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTF 140

Query: 136 SSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
           + Y VVHE    KI  D PL  A  L C   T    ++     +PG ++ V GLGG+G  
Sbjct: 141 AEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLA 200

Query: 196 AVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSD-------LEQMKALGKSLDF 247
           A++  KA G   +  +  +  K E A    GA  FV   +       + ++   G   D+
Sbjct: 201 AIQGAKAAGAGRIIAVDINPEKLELAKK-FGATHFVNPKEVDDVVEAIVELTDGG--ADY 257

Query: 248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASL 287
             +           +      G  V++G      ++   P  L
Sbjct: 258 AFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQL 300

Length = 366

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  118 bits (297), Expect = 4e-31
 Identities = 78/284 (27%), Positives = 116/284 (40%), Gaps = 45/284 (15%)

Query: 20  GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEV 78
            VL          G  +V + +   GV   DV+  +         P +PG E  G+V  V
Sbjct: 13  EVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAV 72

Query: 79  GHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSY 138
           G  V+ FKVGD V     V   RD                              GGY+ Y
Sbjct: 73  GSGVTGFKVGDRVAALGGV--GRD------------------------------GGYAEY 100

Query: 139 IVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAV 197
           +VV   +   + +      AA L  AG+T +  +      +PG+++ V G  GG+G  A+
Sbjct: 101 VVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI 160

Query: 198 KFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTA 252
           +  KA G  V V   S+S+K E L  LGAD  +   +   +EQ++ L  GK +D ++DT 
Sbjct: 161 QLAKALGATV-VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219

Query: 253 SGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
            G   F A ++ L   G  V +G  S        + +   PL  
Sbjct: 220 -GGDTFAASLAALAPGGRLVSIGALS----GGPPVPLNLLPLLG 258

Length = 326

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  118 bits (297), Expect = 8e-31
 Identities = 78/284 (27%), Positives = 117/284 (41%), Gaps = 39/284 (13%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
           G  +V + I   G+C++D+            P V GHE  G+V+EVG  V+  K GDHV 
Sbjct: 24  GPGEVLVRIAAAGLCHSDLHVVTGDLPAP-LPAVLGHEGAGVVEEVGPGVTGVKPGDHV- 81

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT--ITKGG-----------YSSYI 139
           V +++ +C  C YC+ G    C            DGT   T  G           ++ Y 
Sbjct: 82  VLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYT 141

Query: 140 VVHERYCYKIANDYPLALAAPLLCAGIT-----VYTPMMRHKMNQPGKSLGVIGLGGLGH 194
           VV E    KI +D PL  AA L C   T     V T  +R     PG ++ VIG GG+G 
Sbjct: 142 VVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVR-----PGDTVAVIGCGGVGL 196

Query: 195 MAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFI 248
            A++  +  G   +  +     K E A    GA   V +S+   +E ++ L  G+  D+ 
Sbjct: 197 NAIQGARIAGASRIIAVDPVPEKLELARR-FGATHTVNASEDDAVEAVRDLTDGRGADYA 255

Query: 249 IDTASGDHP--FDAYMSLLKVAGVYVLVGFP---SKVKFSPASL 287
            +             +++ +  G  V+VG       V      L
Sbjct: 256 FEAV--GRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALEL 297

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  117 bits (294), Expect = 2e-30
 Identities = 70/260 (26%), Positives = 98/260 (37%), Gaps = 17/260 (6%)

Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP-GHEIVGIVKEVGHNVSRFKVG 88
              G  DV I +T  G+C +D+   R          +  GHE VG V EVG  V  FKVG
Sbjct: 21  PIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D V V      C  C YC  G    C    +   A    G    GG++ Y+ V   +   
Sbjct: 80  DRV-VVEPNIPCGHCRYCRAGEYNLCENPGFYGYA--GLGGGIDGGFAEYVRVPADFNLA 136

Query: 149 IAND---YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL 205
              D      A     L      +         +PG ++ V+G G +G +A+   K  G 
Sbjct: 137 KLPDGIDEEAAALTEPLATAYHGH---AERAAVRPGGTVVVVGAGPIGLLAIALAKLLGA 193

Query: 206 -NVTVLSTSTSKKEEALSLLGADKFVVSS---DLEQMKAL--GKSLDFIIDTASGDHPFD 259
             V V+  S  + E A    GAD  V  S      ++  L  G+  D +I+        D
Sbjct: 194 SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALD 253

Query: 260 AYMSLLKVAGVYVLVGFPSK 279
             +  L+  G  V+VG    
Sbjct: 254 QALEALRPGGTVVVVGVYGG 273

Length = 350

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score =  115 bits (290), Expect = 4e-30
 Identities = 71/218 (32%), Positives = 99/218 (45%), Gaps = 12/218 (5%)

Query: 13  WAARDPSGVLS-PYSFNRRAV---GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPG 68
           W    P  +   P  F  R V   G  ++ + +  CGVC  D+  +       +  + PG
Sbjct: 2   WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPG 61

Query: 69  HEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADG 128
           HE+VG V   G +   F VGD VG+     +C  C YC  G E  C  S YT       G
Sbjct: 62  HEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYT-------G 114

Query: 129 TITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG 188
             T GGY+ Y  V   + Y++   Y     APLLCAGI  Y  ++R  +  PG  LG+ G
Sbjct: 115 WDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASL-PPGGRLGLYG 173

Query: 189 LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA 226
            GG  H+  +   A G  V V++   + +  AL+L  A
Sbjct: 174 FGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA 211

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  115 bits (290), Expect = 5e-30
 Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 25/264 (9%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
           G D+V I + + G+CY D++  +  +   KYP++ GHE+VG V+EVG NV  FK GD V 
Sbjct: 24  GKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGDRVA 83

Query: 93  VGTYVNSCRDCEYCNDGLEVHC-ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
              Y      CEYC  G E +C  R  Y        G    G ++ Y  V      K+  
Sbjct: 84  SLLYA-PDGTCEYCRSGEEAYCKNRLGY--------GEELDGFFAEYAKVKVTSLVKVPP 134

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL 210
           +     A  + C    VY  + R  + + G+++ V G  GG+G  A++  KA G  V  +
Sbjct: 135 NVSDEGAVIVPCVTGMVYRGLRRAGV-KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAV 193

Query: 211 STSTSKKEEALSLLG--ADKFVVSSDL-EQMKALGKSLDFIIDTASGDHPFDAYMSLLKV 267
           ++S SK +    ++   AD  +V S   E++K +G   D +I+T  G    +  +  L +
Sbjct: 194 TSSESKAK----IVSKYADYVIVGSKFSEEVKKIG-GADIVIETV-GTPTLEESLRSLNM 247

Query: 268 AGVYVLVGFPSKVKFSPA-SLNIG 290
            G  + +G    V  SP  SL +G
Sbjct: 248 GGKIIQIG---NVDPSPTYSLRLG 268

Length = 334

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  113 bits (285), Expect = 2e-29
 Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 41/252 (16%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKY---PLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G  +V + +   GV   D+         +     PL+PGH++ G+V  VG  V+ FKVGD
Sbjct: 26  GPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGD 85

Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
                                       V+        G      Y+ Y+VV        
Sbjct: 86  E---------------------------VFGMTPFTRGGA-----YAEYVVVPADELALK 113

Query: 150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVT 208
             +     AA L  AG+T +  +      + G+++ + G  GG+G  AV+  KA G    
Sbjct: 114 PANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA--R 171

Query: 209 VLSTSTSKKEEALSLLGADKFVVSSD-LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKV 267
           V++T+++   + L  LGAD+ +  +    +  A    +D ++DT  G+      ++L+K 
Sbjct: 172 VIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE-TLARSLALVKP 230

Query: 268 AGVYV-LVGFPS 278
            G  V + G P 
Sbjct: 231 GGRLVSIAGPPP 242

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  107 bits (269), Expect = 3e-29
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 35  DDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
            +V + +   G+C +D+   R +    K PL+ GHE  GIV+EVG  V+  KVGD V V 
Sbjct: 2   GEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVY 61

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
             +  C  C  C +G E  C    +    +D       GG++ Y+VV  R    +
Sbjct: 62  PLI-PCGKCAACREGRENLCPNGKFLGVHLD-------GGFAEYVVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  113 bits (285), Expect = 3e-29
 Identities = 78/238 (32%), Positives = 108/238 (45%), Gaps = 35/238 (14%)

Query: 30  RAVGSDDVSITITHCGVCYADV-IWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFK 86
              G D+V I +  CG+C  D+ I+     G+  +  PLVPGHE  G+V  VG  V+ FK
Sbjct: 20  PEPGPDEVLIKVAACGICGTDLHIY----EGEFGAAPPLVPGHEFAGVVVAVGSKVTGFK 75

Query: 87  VGDHVGVGTYVN-SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 145
           VGD V V    N  C +C YC  G    C        A+   G    GG++ Y+VV  + 
Sbjct: 76  VGDRVAVD--PNIYCGECFYCRRGRPNLCEN----LTAV---GVTRNGGFAEYVVVPAKQ 126

Query: 146 CYKIANDYPLALAA---PLLCA--GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFG 200
            YKI ++     AA   PL CA  G+ +          +PG S+ V G G +G +  +  
Sbjct: 127 VYKIPDNLSFEEAALAEPLSCAVHGLDLLGI-------KPGDSVLVFGAGPIGLLLAQLL 179

Query: 201 KAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS---DLEQMKALGKSLDFIIDTASG 254
           K  G   VTV   +  K E A   LGA + V  S      Q +      D +I+ A+G
Sbjct: 180 KLNGASRVTVAEPNEEKLELAKK-LGATETVDPSREDPEAQKEDNPYGFDVVIE-ATG 235

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  113 bits (284), Expect = 4e-29
 Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 25/256 (9%)

Query: 32  VGSDDVSITITHCGVCYADVIWTR-NKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
            G  +V + +  CG+C +D+   R    G    PLV GHE  G V+EVG  V    VGD 
Sbjct: 22  PGPGEVLVKVKACGICGSDI--PRYLGTGAYHPPLVLGHEFSGTVEEVGSGVDDLAVGDR 79

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCA-RSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
           V V   +  C  CEYC  G    C+             G+   G ++ Y+ V  R   KI
Sbjct: 80  VAVNPLL-PCGKCEYCKKGEYSLCSNYDYI--------GSRRDGAFAEYVSVPARNLIKI 130

Query: 150 ANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
            +      AA   P   A   V     R      G ++ VIG G +G +A+++ K  G  
Sbjct: 131 PDHVDYEEAAMIEPAAVALHAV-----RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAK 185

Query: 207 VTVLSTSTSKKEEALSLLGADKFVVSS--DLEQMKAL--GKSLDFIIDTASGDHPFDAYM 262
             +      +K      LGAD  +     D+E+++ L  G+  D +I+ A      +  +
Sbjct: 186 RVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQAL 245

Query: 263 SLLKVAGVYVLVGFPS 278
           +L +  G  VLVG P 
Sbjct: 246 ALARPGGKVVLVGIPY 261

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score =  111 bits (280), Expect = 1e-28
 Identities = 77/256 (30%), Positives = 119/256 (46%), Gaps = 19/256 (7%)

Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
           R +   +  + + +CGVC+ D+      +GD   K   + GHE +GIVKEVG  V+  KV
Sbjct: 21  RPLKHGEALVKMEYCGVCHTDL---HVANGDFGDKTGRILGHEGIGIVKEVGPGVTSLKV 77

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           GD V +  +   C  CEYC  G E  C RSV   NA    G    GG +   +V   Y  
Sbjct: 78  GDRVSIAWFFEGCGHCEYCTTGRETLC-RSVK--NA----GYTVDGGMAEQCIVTADYAV 130

Query: 148 KIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGK-AFGLN 206
           K+      A A+ + CAG+T Y  +    + +PG+ + + G GGLG++A+++ K  F   
Sbjct: 131 KVPEGLDPAQASSITCAGVTTYKAIKVSGI-KPGQWIAIYGAGGLGNLALQYAKNVFNAK 189

Query: 207 VTVLSTSTSKKEEALSLLGADKFVVSSDLE----QMKALGKSLDFIIDTASGDHPFDAYM 262
           V  +  +  K   A   +GAD  + S  +E     ++         + TA     F+  +
Sbjct: 190 VIAVDINDDKLALAKE-VGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAV 248

Query: 263 SLLKVAGVYVLVGFPS 278
             ++  G  V VG P 
Sbjct: 249 DAVRAGGRVVAVGLPP 264

Length = 338

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  110 bits (278), Expect = 4e-28
 Identities = 85/294 (28%), Positives = 127/294 (43%), Gaps = 43/294 (14%)

Query: 19  SGVLSPYSFNR---------RAVGSDDVSITITHCGVCYAD--VIWTRNKHGDSKYPLVP 67
           +G  +PY+ +R            G  +V + I   G+C++D  VI   N       P+  
Sbjct: 9   TGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVI---NGDRPRPLPMAL 65

Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDAD 127
           GHE  G+V EVG  V+  +VGDHV V  +V SC  C  C +G    C        A +  
Sbjct: 66  GHEAAGVVVEVGEGVTDLEVGDHV-VLVFVPSCGHCRPCAEGRPALCEPGA----AANGA 120

Query: 128 GTITKGG------------------YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY 169
           GT+  GG                  ++ Y VV  R   KI  D PL +AA   CA +T  
Sbjct: 121 GTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGV 180

Query: 170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADK 228
             ++     +PG+S+ V+GLGG+G  A+    A G + V  +  +  K   A   LGA  
Sbjct: 181 GAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGATA 239

Query: 229 FVVSSD---LEQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS 278
            V + D   +EQ++ L G  +D+  + A      +    + +  G  V  G P 
Sbjct: 240 TVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPD 293

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  109 bits (275), Expect = 5e-28
 Identities = 78/252 (30%), Positives = 113/252 (44%), Gaps = 20/252 (7%)

Query: 27  FNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFK 86
                 G  +V I +   GV   D     N       P +PG E  G+V+EVG +V   K
Sbjct: 19  VKDPKPGPGEVLIRVKMAGVNPVDY-NVINAVKVKPMPHIPGAEFAGVVEEVGDHVKGVK 77

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
            GD V V   V     C+ C  G E+ C R+          G ++ GGY+ YIVV E+  
Sbjct: 78  KGDRVVVYNRV-FDGTCDMCLSGNEMLC-RNGGII------GVVSNGGYAEYIVVPEKNL 129

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGG-LGHMAVKFGKAFGL 205
           +KI +     LAA L  A +T Y   ++     PG+++ V G  G  G  AV+  K  G 
Sbjct: 130 FKIPDSISDELAASLPVAALTAYH-ALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGA 188

Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQMKALGKSLDFIIDTASGDHPFDAYMS 263
            V  +S     +++ L   GAD  VV  D   E++K + K  D +I++  G   +D  +S
Sbjct: 189 EVIAVS-----RKDWLKEFGAD-EVVDYDEVEEKVKEITKMADVVINSL-GSSFWDLSLS 241

Query: 264 LLKVAGVYVLVG 275
           +L   G  V  G
Sbjct: 242 VLGRGGRLVTFG 253

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  109 bits (274), Expect = 5e-28
 Identities = 74/263 (28%), Positives = 112/263 (42%), Gaps = 25/263 (9%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
            G  +V I +   G+C +D+   +  +   + P+V GHE  G + EVG +V  +KVGD V
Sbjct: 24  PGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVGDRV 83

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
              T  ++C  C YC  G    C             GT   GG++ Y++V E   +++  
Sbjct: 84  VSETTFSTCGRCPYCRRGDYNLCPHRK-------GIGTQADGGFAEYVLVPEESLHELPE 136

Query: 152 DYPL---ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
           +  L   AL  PL  A       +      +PG ++ V G G +G +A +  K  G  V 
Sbjct: 137 NLSLEAAALTEPLAVA----VHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVV 192

Query: 209 VLSTSTSKKEEALSL---LGADKFVVS----SDLEQMKALGKSLDFIIDTASGDHP-FDA 260
           V    T K E  L +   LGAD         ++L      G   D +I+  SG  P  + 
Sbjct: 193 V--VGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITDGDGADVVIE-CSGAVPALEQ 249

Query: 261 YMSLLKVAGVYVLVGFPSKVKFS 283
            + LL+  G  V VG    +  S
Sbjct: 250 ALELLRKGGRIVQVGIFGPLAAS 272

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  109 bits (276), Expect = 8e-28
 Identities = 81/281 (28%), Positives = 122/281 (43%), Gaps = 49/281 (17%)

Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
                D+V + I   G+C+ D++  R+    +  P V GHE  G+V+ VG  V+  K GD
Sbjct: 23  DDPRPDEVLVRIVATGICHTDLV-VRDGGLPTPLPAVLGHEGAGVVEAVGSAVTGLKPGD 81

Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSV-YTFNAIDADGT--ITKGG------------ 134
           HV V ++  SC +C  C  G   +C       F+    DG+  ++               
Sbjct: 82  HV-VLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQS 139

Query: 135 -YSSYIVVHERYCYKIANDYPLALAAPLLC-----AGITVYTPMMRHKMN----QPGKSL 184
            +++Y VVHER   K+  D PL L APL C     AG  V        +N    +PG S+
Sbjct: 140 SFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAG-AV--------LNVLKPRPGSSI 190

Query: 185 GVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKA 240
            V G G +G  AV   K  G   +  +    S+ E A   LGA   +   +   +  ++ 
Sbjct: 191 AVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE-LGATHVINPKEEDLVAAIRE 249

Query: 241 L-GKSLDFIIDTASGDHPF---DAYMSLLKVAGVYVLVGFP 277
           + G  +D+ +DT +G  P     A  + L   G   LVG P
Sbjct: 250 ITGGGVDYALDT-TG-VPAVIEQAVDA-LAPRGTLALVGAP 287

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  108 bits (271), Expect = 3e-27
 Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 21/262 (8%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G  +V + +   G+C +D+  +       +   ++PGHE  G+V  VG  V+ F+VGD V
Sbjct: 23  GPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRV 82

Query: 92  GVGTYVNSCRDCEYCNDGLEVHC--ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
            V  YV  C  C  C  G    C   R+ Y +N          GG++ Y++V E+    +
Sbjct: 83  MVYHYV-GCGACRNCRRGWMQLCTSKRAAYGWNR--------DGGHAEYMLVPEKTLIPL 133

Query: 150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVT 208
            +D   A  A LLC   T Y  + R  ++    ++ V+G G +G  A+   +A G  +V 
Sbjct: 134 PDDLSFADGALLLCGIGTAYHALRRVGVS-GRDTVLVVGAGPVGLGALMLARALGAEDVI 192

Query: 209 VLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDAYMS 263
            +  S  + E A + LGAD FV++S  + ++ +     G   D  I+ +         + 
Sbjct: 193 GVDPSPERLELAKA-LGAD-FVINSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALE 250

Query: 264 LLKVAGVYVLVGFPSKVKFSPA 285
            ++  G  VLVG   ++    +
Sbjct: 251 AVRPWGRLVLVGEGGELTIEVS 272

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  108 bits (271), Expect = 4e-27
 Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 37/274 (13%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKH---GDSKYP--LVPGHEIVGIVKEVGHNV---SR 84
              ++ I +  CGVC++D+      H   G+  +P   V GHEI G V EVG NV     
Sbjct: 24  KEGEILIRVAACGVCHSDL------HVLKGELPFPPPFVLGHEISGEVVEVGPNVENPYG 77

Query: 85  FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA---DGTI----------- 130
             VGD V VG+++  C  C YC  G E  C    + +N +     DGT            
Sbjct: 78  LSVGDRV-VGSFIMPCGKCRYCARGKENLCED-FFAYNRLKGTLYDGTTRLFRLDGGPVY 135

Query: 131 --TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG 188
             + GG + Y VV       +        +A L CAG T Y  +      +PG+++ VIG
Sbjct: 136 MYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG 195

Query: 189 LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GK 243
           +GG+G  A++  KAFG +  +      +K      LGA   V ++  + + A+     G+
Sbjct: 196 VGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGR 255

Query: 244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP 277
            +D +++       F   + +++  G  V+VG  
Sbjct: 256 GVDVVVEALGKPETFKLALDVVRDGGRAVVVGLA 289

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  107 bits (269), Expect = 6e-27
 Identities = 77/281 (27%), Positives = 116/281 (41%), Gaps = 34/281 (12%)

Query: 31  AVGSDDVSITITHCGVC------YAD---VIWTRNKHGDS--KYPLVPGHEIVGIVKEVG 79
            V   +V I +  CG+C      Y D    I T      +    P+  GHE  G+V EVG
Sbjct: 21  PVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVG 80

Query: 80  HNVSRFKVGDHVGV-GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSY 138
             V+ FKVGD V V  T    C  C  C  GL   C      F  +   G    GG++ Y
Sbjct: 81  SGVTGFKVGDRVVVEPTI--KCGTCGACKRGLYNLCDS--LGFIGLGGGG----GGFAEY 132

Query: 139 IVVHERYCYKIANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
           +VV   + +K+ ++ PL  AA   PL      V    +R    +PG +  V+G G +G +
Sbjct: 133 VVVPAYHVHKLPDNVPLEEAALVEPL-----AVAWHAVRRSGFKPGDTALVLGAGPIGLL 187

Query: 196 AVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQMKAL--GKSLDFIID 250
            +   KA G   + V   S +++E A  L        +    + +++ L  G  +D   D
Sbjct: 188 TILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFD 247

Query: 251 TASGDHPFDAYMSLLKVAGVYVLVG-FPSKVKFSPASLNIG 290
            A      D  +  L+  G  V V  +   + F+P  L + 
Sbjct: 248 CAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLK 288

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  105 bits (265), Expect = 2e-26
 Identities = 69/214 (32%), Positives = 95/214 (44%), Gaps = 23/214 (10%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHG------DSKYPLVPGHEIVGIVKEVGHNVSR 84
               D V + +  CGVC +D  W    HG      D   P VPGHE  G+V EVG +VSR
Sbjct: 22  EPPPDGVVVEVEACGVCRSD--W----HGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSR 75

Query: 85  FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVH-- 142
           ++VGD V V  +V  C  C YC  G    C   V         G    G ++ Y+ V   
Sbjct: 76  WRVGDRVTV-PFVLGCGTCPYCRAGDSNVCEHQV-------QPGFTHPGSFAEYVAVPRA 127

Query: 143 ERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKA 202
           +    ++ +D     AA L C   T +  ++     +PG+ + V G GG+G  AV    A
Sbjct: 128 DVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASA 187

Query: 203 FGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE 236
            G  V  +     K E A   LGA   V +S++E
Sbjct: 188 LGARVIAVDIDDDKLELARE-LGAVATVNASEVE 220

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  105 bits (264), Expect = 4e-26
 Identities = 75/268 (27%), Positives = 111/268 (41%), Gaps = 40/268 (14%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
            G  +V + +  CG+C  DV   R  H D K P + GHEI G + EVG  V+ FKVGD V
Sbjct: 22  PGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGDRV 81

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC----- 146
            V      C +C YC  G E  C       N  D       GG++ Y+ V          
Sbjct: 82  FV-APHVPCGECHYCLRGNENMCPNYKKFGNLYD-------GGFAEYVRVPAWAVKRGGV 133

Query: 147 YKIANDYPLALAA---PLLC-------AGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMA 196
            K+ ++     AA   PL C       AGI            +PG ++ VIG G +G + 
Sbjct: 134 LKLPDNVSFEEAALVEPLACCINAQRKAGI------------KPGDTVLVIGAGPIGLLH 181

Query: 197 VKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDT 251
               KA G    ++S     + E    LGAD  + +++   +E+++ L  G+  D +I  
Sbjct: 182 AMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVA 241

Query: 252 ASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
                     + L++  G  +  G   K
Sbjct: 242 TGSPEAQAQALELVRKGGRILFFGGLPK 269

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  103 bits (259), Expect = 2e-25
 Identities = 79/279 (28%), Positives = 110/279 (39%), Gaps = 35/279 (12%)

Query: 39  ITITHCGVCYADV-IWTRNKHGDS---KYPLVPGHEIVGIVKEVG------HNVSRFKVG 88
           + +   GVC +DV        G       P++ GHE VG V  +G            KVG
Sbjct: 30  VRVRLAGVCGSDVHTV----AGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVG 85

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCA-RSVYTFNAIDADGTITKGGYSSYIVVH-ERYC 146
           D V   +    C  C  C  G    C  R  Y   A   D  ++ GGY+ +I +      
Sbjct: 86  DRV-TWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLS-GGYAEHIYLPPGTAI 143

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-L 205
            ++ ++ P  +AAP  CA  TV   + R      G ++ V G G LG  AV   K  G  
Sbjct: 144 VRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGAR 203

Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL--------GKSLDFIIDTASGDHP 257
            V V+  S  + E A    GAD  +   +L   +          G+  D +I+ ASG HP
Sbjct: 204 RVIVIDGSPERLELARE-FGADATIDIDELPDPQRRAIVRDITGGRGADVVIE-ASG-HP 260

Query: 258 --FDAYMSLLKVAGVYVLVGF---PSKVKFSPASLNIGN 291
                 + LL+  G YVLVG       V   P  +   N
Sbjct: 261 AAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKN 299

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  101 bits (255), Expect = 4e-25
 Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 44/251 (17%)

Query: 35  DDVSITITHCGVCYADVIWTRNKHGDS-KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGV 93
            +V I +   GV + D++  + K+      P VPG E+ G+V+ VG  V+ FKVGD V  
Sbjct: 28  GEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVA 87

Query: 94  GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDY 153
            T                                    +GG++  +VV     + + +  
Sbjct: 88  LT-----------------------------------GQGGFAEEVVVPAAAVFPLPDGL 112

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST 212
               AA L     T Y  ++R    QPG+++ V+G  GG+G  AV+  KA G  V   ++
Sbjct: 113 SFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAAS 172

Query: 213 STSKKEEALSLLGADKFVVSSDL---EQMKAL--GKSLDFIIDTASGDHPFDAYMSLLKV 267
           S  K   A + LGAD  +   D    E++KAL  G+ +D + D   GD  F+A +  L  
Sbjct: 173 SEEKLALARA-LGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDV-FEASLRSLAW 230

Query: 268 AGVYVLVGFPS 278
            G  +++GF S
Sbjct: 231 GGRLLVIGFAS 241

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  101 bits (253), Expect = 1e-24
 Identities = 75/275 (27%), Positives = 115/275 (41%), Gaps = 30/275 (10%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
            +++V I +    VC+ D I        + +P++ GHE  GIV+ VG  V+  K GD V 
Sbjct: 26  KANEVRIKMLATSVCHTD-ILAIEGFKATLFPVILGHEGAGIVESVGEGVTNLKPGDKV- 83

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT--ITKGG-----------YSSYI 139
           +  ++  C +C  C  G    C +     + +  DGT   T  G           +S Y 
Sbjct: 84  IPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYT 143

Query: 140 VVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKF 199
           VV E Y  KI    PL     L C   T Y         +PG ++ V GLG +G  A+  
Sbjct: 144 VVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMG 203

Query: 200 GKAFGLN-VTVLSTSTSKKEEALSLLGADKFV--------VSSDLEQMKALGKSLDFIID 250
            K  G + +  +  +  K E+A    GA  F+        VS  + +M   G  +D+  +
Sbjct: 204 AKIAGASRIIGVDINEDKFEKA-KEFGATDFINPKDSDKPVSEVIREMTGGG--VDYSFE 260

Query: 251 TASGDHPF--DAYMSLLKVAGVYVLVGFPSKVKFS 283
             +G+     +A  S     GV V+VG P   + S
Sbjct: 261 -CTGNADLMNEALESTKLGWGVSVVVGVPPGAELS 294

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 97.5 bits (243), Expect = 3e-23
 Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 23/269 (8%)

Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
               + +V I +   GVC+ D+    +    +  P++ GHE  GIV+ +G  V+  K GD
Sbjct: 21  APPKAGEVRIKVVATGVCHTDLH-VIDGKLPTPLPVILGHEGAGIVESIGPGVTTLKPGD 79

Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT---ITKG----------GY 135
            V +  +   C  C+ C +     C++S       + +DGT     KG           +
Sbjct: 80  KV-IPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTF 138

Query: 136 SSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
           + Y VV E    KI  D PL     + C   T Y   +      PG +  V GLGG+G  
Sbjct: 139 AEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLS 198

Query: 196 AVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE--QMKAL----GKSLDFII 249
            +   KA G +  +       K E    LGA + +   D +   ++ L       +D+  
Sbjct: 199 VIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAF 258

Query: 250 DTA-SGDHPFDAYMSLLKVAGVYVLVGFP 277
           +   S D    A  +     G  V+VG P
Sbjct: 259 EVIGSADTLKQALDATRLGGGTSVVVGVP 287

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 95.7 bits (239), Expect = 8e-23
 Identities = 66/242 (27%), Positives = 91/242 (37%), Gaps = 40/242 (16%)

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
            +P +PG +  G V  VG  V+RFKVGD V                             F
Sbjct: 57  PFPPIPGMDFAGEVVAVGSGVTRFKVGDEV-----------------------------F 87

Query: 122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
             +   G    G  + Y+V  E    K         AA L  AG+T    +      +PG
Sbjct: 88  GRLPPKG---GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPG 144

Query: 182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQM 238
           + + + G  GG+G  AV+  KA G +VT    ST   E   S LGAD+ +   + D   +
Sbjct: 145 QRVLINGASGGVGTFAVQIAKALGAHVTG-VCSTRNAELVRS-LGADEVIDYTTEDFVAL 202

Query: 239 KALGKSLDFIIDTASGDHPFDAYMSLLKVA--GVYVLVGFPSKVKFSPASLNIGNAPLFR 296
            A G+  D I D   G+ PF  Y + L +   G YV VG           L         
Sbjct: 203 TAGGEKYDVIFDAV-GNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGG 261

Query: 297 FK 298
            +
Sbjct: 262 RR 263

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 33/269 (12%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
            + +V + +   G+C++D           +YP++ GHE  G+V +VG  V+  K GDHV 
Sbjct: 25  KAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHEGAGVVTKVGPGVTGVKPGDHV- 83

Query: 93  VGTYVNSCRDCEYCNDGLEVHCAR------------SVYTFNAIDADGTITK--GGYSSY 138
           V +++ +C  C +C+ GL+  C                Y F+A   D       G +S Y
Sbjct: 84  VLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYRFHADGQDVGQMCLLGTFSEY 143

Query: 139 IVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVK 198
            VV E    KI +D PL  A  + C   T +   +     +PG ++ V+G+GG+G  AV+
Sbjct: 144 TVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADVRPGDTVVVMGIGGVGINAVQ 203

Query: 199 FGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF---------- 247
                G   V  +     K+E+AL   GA     S +    +A+    +           
Sbjct: 204 GAAVAGARKVIAVDPVEFKREQALK-FGATHAFASME----EAVQLVRELTNGQGADKTI 258

Query: 248 -IIDTASGDHPFDAYMSLLKVAGVYVLVG 275
             +    G+H     +S  +  G  V+ G
Sbjct: 259 ITVGEVDGEH-IAEALSATRKGGRVVVTG 286

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 91.9 bits (229), Expect = 2e-21
 Identities = 61/269 (22%), Positives = 99/269 (36%), Gaps = 43/269 (15%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
            + +V + +   GV +ADV   R  + D    P  PG+++VG V  +G  V+ F+VGD V
Sbjct: 26  AAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRV 85

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                                  A +               GG + YI +  +Y   +  
Sbjct: 86  A----------------------ALTRV-------------GGNAEYINLDAKYLVPVPE 110

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL 210
               A A  L+   +T Y  + R      G+ + + G  GG+G   ++     G    V 
Sbjct: 111 GVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA--EVY 168

Query: 211 STSTSKKEEALSLLGADKFVVSSD--LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVA 268
            T++ +   AL  LGA      +   L  M   G  +D + D   G+  ++   + L   
Sbjct: 169 GTASERNHAALRELGATPIDYRTKDWLPAMLTPGG-VDVVFDGVGGES-YEESYAALAPG 226

Query: 269 GVYVLVGFPSKVKFSPASLNIGNAPLFRF 297
           G  V  G  S +     SL    + L R 
Sbjct: 227 GTLVCYGGNSSLLQGRRSLAALGSLLARL 255

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 90.7 bits (226), Expect = 6e-21
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS---KYPLVPGHEIVGIVKEVGHNVSRFK 86
             G+ +V + +   G+C +D+ I+    HG +    YP + GHE+ G V EVG  V+  K
Sbjct: 21  VPGAGEVLVRVKRVGICGSDLHIY----HGRNPFASYPRILGHELSGEVVEVGEGVAGLK 76

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
           VGD V V  Y+ SC +C  C  G   +C  ++         G    GG++ YIVV     
Sbjct: 77  VGDRVVVDPYI-SCGECYACRKGR-PNCCENLQVL------GVHRDGGFAEYIVVPAD-A 127

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
             +     L  AA  L   + +    +R      G ++ V+G G +G   ++  KA G  
Sbjct: 128 LLVPEGLSLDQAA--LVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR 185

Query: 207 VTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKAL--GKSLDFIIDTASGDHPFDAYM 262
           V V+     + E A  L   D   V  +    +++ L  G+  D +ID        +  +
Sbjct: 186 VIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAV 245

Query: 263 SLLKVAGVYVLVGF 276
            L+   G  VLVG 
Sbjct: 246 ELVAHGGRVVLVGL 259

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 37/261 (14%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRN-----KHGDSKYPLVPGHEIVGIVKEVGHNVSRFK 86
            G D+V + +    + + D +W R      K      P + G +  G+V+ VG  V+  K
Sbjct: 25  PGPDEVLVRVKAAALNHLD-LWVRRGMPGIKL---PLPHILGSDGAGVVEAVGPGVTNVK 80

Query: 87  VGDHVGVGTYVN-SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 145
            G  V +  Y   SC  CEYC  G E  CA+           G    GGY+ Y+ V  R 
Sbjct: 81  PGQRVVI--YPGISCGRCEYCLAGRENLCAQYGIL-------GEHVDGGYAEYVAVPARN 131

Query: 146 CYKIANDYPLALAAPLLCAGITVYTP--MMRHKMN-QPGKSLGVIGLG-GLGHMAVKFGK 201
              I ++     AA    A +T  T   M+  +   +PG+++ V G G G+G  A++  K
Sbjct: 132 LLPIPDNLSFEEAA---AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAK 188

Query: 202 AFGLNVTVLSTSTSKKEEALSLLGADKFV-------VSSDLEQMKALGKSLDFIIDTASG 254
            FG  V   + S  K E A   LGAD  +       V    E      + +D +++    
Sbjct: 189 LFGATVIATAGSEDKLERAKE-LGADYVIDYRKEDFVREVRELTG--KRGVDVVVEHVGA 245

Query: 255 DHPFDAYMSLLKVAGVYVLVG 275
              ++  +  L   G  V  G
Sbjct: 246 AT-WEKSLKSLARGGRLVTCG 265

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 20/178 (11%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G  +V I +    +C  DV I+  ++   S  K PL+ GHE  G V EVG  V+R KVGD
Sbjct: 24  GPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGD 83

Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
           +V   T++  C  C  C  G   H  ++      +D DG      ++ Y+VV E   +K 
Sbjct: 84  YVSAETHIV-CGKCYQCRTG-NYHVCQNTKIL-GVDTDGC-----FAEYVVVPEENLWKN 135

Query: 150 ANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG 204
             D P  +A+   PL  A  TV    +       GKS+ + G G +G MA+   KA G
Sbjct: 136 DKDIPPEIASIQEPLGNAVHTVLAGDVS------GKSVLITGCGPIGLMAIAVAKAAG 187

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 67/255 (26%), Positives = 100/255 (39%), Gaps = 53/255 (20%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
            S +V + +  CG+ +AD++  R    DS  K P VPG E  G V+ VG  V  FKVGD 
Sbjct: 25  SSGEVRVRVEACGLNFADLM-ARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDR 83

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
           V   T                                     GGY+  + V     + + 
Sbjct: 84  VMGLTRF-----------------------------------GGYAEVVNVPADQVFPLP 108

Query: 151 NDYPLALAAPLLCAGITVYTPMMRHKMN--QPGKSLGV-IGLGGLGHMAVKFGKAFGLNV 207
           +      AA      +T Y      ++   +PG+S+ V    GG+G  A +  K    NV
Sbjct: 109 DGMSFEEAAAFPVNYLTAY--YALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVP-NV 165

Query: 208 TVLSTSTSKKEEALSLLGA----DKFVVSSDLEQ--MKALGKSLDFIIDTASGDHPFDAY 261
           TV+ T+++ K EAL   G     D      D  +   K   + +D ++D   G+    +Y
Sbjct: 166 TVVGTASASKHEALKENGVTHVIDYRT--QDYVEEVKKISPEGVDIVLDALGGEDTRKSY 223

Query: 262 MSLLKVAGVYVLVGF 276
             LLK  G  V+ G 
Sbjct: 224 -DLLKPMGRLVVYGA 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 83.0 bits (206), Expect = 4e-18
 Identities = 64/239 (26%), Positives = 97/239 (40%), Gaps = 22/239 (9%)

Query: 37  VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY 96
           V I I   GVC+ D         +  +P++ GHE  GIV+ VG  V+  K GDHV +  Y
Sbjct: 30  VRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPGDHV-IPLY 88

Query: 97  VNSCRDCEYCNDGLEVHCAR-SVYTFNAIDADGT--ITKGG-----------YSSYIVVH 142
              C +C++C  G    C +        +  DGT   +  G           +S Y VV 
Sbjct: 89  TPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVA 148

Query: 143 ERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKA 202
           E    KI  + PL     L C   T Y  ++     +PG ++ V GLG +G   ++  KA
Sbjct: 149 EISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKA 208

Query: 203 FGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG--DHPFD 259
            G +  +       K E     GA   V   D ++          +++   G  D+ F+
Sbjct: 209 AGASRIIGIDINPDKFELAKKFGATDCVNPKDHDK-----PIQQVLVEMTDGGVDYTFE 262

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 83.0 bits (205), Expect = 5e-18
 Identities = 65/238 (27%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 7   SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLV 66
           S+  + WAA  P   L     +       +V + I   GVC+ D         +  +P++
Sbjct: 2   SRAAVAWAAGQP---LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVI 58

Query: 67  PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAID 125
            GHE  GIV+ VG  V+  KVGDHV +  Y   C +C++C  G    C     T    + 
Sbjct: 59  LGHEGAGIVEAVGEGVTSVKVGDHV-IPLYTAECGECKFCLSGKTNLCVAVRETQGKGLM 117

Query: 126 ADGT--ITKGG-----------YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPM 172
            DGT   +K G           +S Y VV E    KI    PL     L C   T    +
Sbjct: 118 PDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAV 177

Query: 173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV 230
           +     + G ++ V GLGG+G   ++  +    +  +       K E    LGA   V
Sbjct: 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCV 235

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 70/267 (26%), Positives = 109/267 (40%), Gaps = 42/267 (15%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKV 87
             G  +V + +   G+C +D+  +     G    + P+V GHE+ G+V+ VG  V+    
Sbjct: 18  EPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAP 77

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           G  V V      C  C+YC  G    C  ++  F          +GG+  Y+VV    C 
Sbjct: 78  GQRVAVNPSR-PCGTCDYCRAGRPNLC-LNM-RFLGSAMRFPHVQGGFREYLVVDASQCV 134

Query: 148 KIANDYPLALAA---PLLCAGITVYTPMMRHKMNQ----PGKSLGVIGLGGLGHMAVKFG 200
            + +   L  AA   PL  A          H +N+     GK + V G G +G + V   
Sbjct: 135 PLPDGLSLRRAALAEPLAVA---------LHAVNRAGDLAGKRVLVTGAGPIGALVVAAA 185

Query: 201 KAFG---LNVTVLSTSTSKKEEALSL---LGADKFV-VSSDLEQMKALGKS-LDFIIDTA 252
           +  G   +  T L+      +  L++   +GAD+ V ++ D     A  K   D + + A
Sbjct: 186 RRAGAAEIVATDLA------DAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFE-A 238

Query: 253 SGDHPFDAYMSLLKVA---GVYVLVGF 276
           SG     A  S L+V    G  V VG 
Sbjct: 239 SGAPA--ALASALRVVRPGGTVVQVGM 263

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 80.2 bits (199), Expect = 3e-17
 Identities = 66/264 (25%), Positives = 102/264 (38%), Gaps = 66/264 (25%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPL------VPGHEIVGIVKEVGHNVSR 84
           A G  +V I +   GV  AD++  +       YP       + G E+ G+V  VG  V+ 
Sbjct: 24  APGPGEVLIRVAAAGVNRADLLQRQGL-----YPPPPGASDILGLEVAGVVVAVGPGVTG 78

Query: 85  FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER 144
           +KVGD V                      CA              +  GGY+ Y+VV   
Sbjct: 79  WKVGDRV----------------------CA-------------LLAGGGYAEYVVVPAG 103

Query: 145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI--GLGGLGHMAVKFGKA 202
               +     L  AA L     T +  + +    + G+++ +I  G  G+G  A++  KA
Sbjct: 104 QLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETV-LIHGGASGVGTAAIQLAKA 162

Query: 203 FGLNVTVLSTSTSKKEEALSLLGADK--------FVVSSDLEQMKAL--GKSLDFIIDTA 252
            G  V   +  + +K EA   LGAD         F      E++K    G+ +D I+D  
Sbjct: 163 LGARVIA-TAGSEEKLEACRALGADVAINYRTEDFA-----EEVKEATGGRGVDVILDMV 216

Query: 253 SGDHPFDAYMSLLKVAGVYVLVGF 276
            GD+     +  L   G  VL+G 
Sbjct: 217 GGDY-LARNLRALAPDGRLVLIGL 239

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 80.2 bits (198), Expect = 4e-17
 Identities = 73/260 (28%), Positives = 108/260 (41%), Gaps = 19/260 (7%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
           G  +V + I  CGVC+ D+ +      D ++P + GHE  G+V+ VG  V+    GD+V 
Sbjct: 25  GPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPGDYV- 82

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID----ADGT-----ITKGGYSSYIVVHE 143
           V  +   C  C  C  G   +C     T NA       DGT     +  G ++   +VH 
Sbjct: 83  VLNWRAVCGQCRACKRGRPWYCFD---THNATQKMTLTDGTELSPALGIGAFAEKTLVHA 139

Query: 144 RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
             C K+      A A  L C  +      +     + G S+ VIG GG+G  A+      
Sbjct: 140 GQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALA 199

Query: 204 GLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPF 258
           G +  +      +K E     GA   V SS    +E ++AL  G   D +ID       +
Sbjct: 200 GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPETY 259

Query: 259 DAYMSLLKVAGVYVLVGFPS 278
                   +AG  VLVG P+
Sbjct: 260 KQAFYARDLAGTVVLVGVPT 279

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 79.5 bits (196), Expect = 6e-17
 Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 23/273 (8%)

Query: 32  VGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVG 88
            G  +V I +    +C  DV I+  ++   S  K P V GHE+ G V  +G  V   KVG
Sbjct: 21  PGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVG 80

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D+V V T++  C  C  C  G + H  ++   F      G  T G ++ Y VV  +  +K
Sbjct: 81  DYVSVETHI-VCGKCYACRRG-QYHVCQNTKIF------GVDTDGCFAEYAVVPAQNIWK 132

Query: 149 IANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
                P   A      G  V+T +        GKS+ V G G +G MA+   KA G    
Sbjct: 133 NPKSIPPEYATIQEPLGNAVHTVL---AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPV 189

Query: 209 VLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFDAYMS 263
           ++S     + E    +GA   V       ++++  L  G+ +D  ++ +      +  + 
Sbjct: 190 IVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQ 249

Query: 264 LLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
            +   G   L+G P        +++  N  +F+
Sbjct: 250 AVTPGGRVSLLGLPP----GKVTIDFTNKVIFK 278

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 78.8 bits (194), Expect = 1e-16
 Identities = 76/286 (26%), Positives = 117/286 (40%), Gaps = 36/286 (12%)

Query: 13  WAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIW----TRNKHGDSKYPLVPG 68
           W   +P   +         +G+ DV + +  CGVC+ D+ +     R  H     PL  G
Sbjct: 2   WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNH---ALPLALG 58

Query: 69  HEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADG 128
           HEI G V + G   + + +G  V V   V  C +CE C  G    C       N +    
Sbjct: 59  HEISGRVIQAGAGAASW-IGKAVIVPA-VIPCGECELCKTGRGTICRAQKMPGNDM---- 112

Query: 129 TITKGGYSSYIVVHERYCYKIAN------DYPLALAAPLLCAGITVYTPMMRHKMNQPGK 182
              +GG++S+IVV  +    +          PL   + +  A  T Y   ++  + + G 
Sbjct: 113 ---QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGL-KKGD 168

Query: 183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL------E 236
            + VIG GG+G   V+  KA G  V  +     K  E +   GAD  +   D       +
Sbjct: 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKL-EMMKGFGADLTLNPKDKSAREVKK 227

Query: 237 QMKALGK-----SLDFIIDTASGDHPF-DAYMSLLKVAGVYVLVGF 276
            +KA  K     S  + I   SG  P  ++ +SLL   G  V+VG+
Sbjct: 228 LIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGY 273

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 64/272 (23%), Positives = 103/272 (37%), Gaps = 40/272 (14%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G+ +V I +   G+  AD ++ R  +      P   G+E  G+V+ VG  V+ F VGD V
Sbjct: 26  GAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRV 85

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
            V                              I A      G Y+ Y +V      K+ +
Sbjct: 86  SV------------------------------IPAADLGQYGTYAEYALVPAAAVVKLPD 115

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL 210
                 AA L    +T Y  ++     +PG S+ +      +G  A++   A G    + 
Sbjct: 116 GLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIA 174

Query: 211 STSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDAYMSLL 265
           +T TS+K +AL  LGA   +V+ + + +  +     GK +D + D   G   F      L
Sbjct: 175 TTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADAL 233

Query: 266 KVAGVYVLVGFPSKVKFS-PASLNIGNAPLFR 296
              G  V+ G  S      P    +  +  FR
Sbjct: 234 APGGTLVVYGALSGEPTPFPLKAALKKSLTFR 265

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 16/226 (7%)

Query: 66  VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV-----NSCRDCEYCNDGLEVHCARSV-- 118
           V GHEIVG V  +    +    G  + +G  V       C  C  C  GL   C  S+  
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKC-DSLRK 59

Query: 119 YTFNAIDADGTITKGGYSSYIVVHE-RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM 177
           Y   A+D+   ++ GGY+ +  +        + +D P A+AAP  CA  TV    +    
Sbjct: 60  YGHEALDSGWPLS-GGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATV-MAALEAAG 117

Query: 178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSD 234
           +  G+ + V+G G LG  A     A G    V +  +  + E     GA       V ++
Sbjct: 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAE 177

Query: 235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG--FPS 278
            +     G+ +D  ++ +       A +  L V G  VL G  FP 
Sbjct: 178 RQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG 223

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 46/227 (20%)

Query: 55  RNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHC 114
             K+   ++PL  G +  G+V ++G  V  F++GD                     EV  
Sbjct: 65  SCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGD---------------------EVWG 103

Query: 115 ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR 174
           A   ++           +G ++ Y+VV E    K   +     AA L  AG+T ++ ++ 
Sbjct: 104 AVPPWS-----------QGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVN 152

Query: 175 H----KMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK- 228
                  N  GK + ++G  GG+G  A++  KA+G +VT   T ++     +  LGAD  
Sbjct: 153 VGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTT--TCSTDAIPLVKSLGADDV 210

Query: 229 --FVVSSDLEQMKALGKSLDFIIDTA-SGDHPFDAYMSLLKVAGVYV 272
             +      E++   GK  D I+DT       +   + LLK  G YV
Sbjct: 211 IDYNNEDFEEELTERGK-FDVILDTVGGDTEKW--ALKLLKKGGTYV 254

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 66/266 (24%), Positives = 105/266 (39%), Gaps = 37/266 (13%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
           G  D  + +T   +C +D+   R     +K+ ++ GHE VG V EVG +V R K GD V 
Sbjct: 24  GPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVS 83

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE--RYCYKIA 150
           V   +  C  C +C  G   HC             G    GG + Y+ V        KI 
Sbjct: 84  VP-CITFCGRCRFCRRGYHAHCE----NGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIP 138

Query: 151 NDYPLALAAPLL------------CAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVK 198
           +  P    A +L             AGI            +PG ++ VIG G +G  AV 
Sbjct: 139 DGLPDE-DALMLSDILPTGFHGAELAGI------------KPGSTVAVIGAGPVGLCAVA 185

Query: 199 FGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTAS 253
             +  G    +   S  ++ +     GA   +   +   +EQ+  L  G+ +D +I+   
Sbjct: 186 GARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVG 245

Query: 254 GDHPFDAYMSLLKVAGVYVLVGFPSK 279
            +  F+  + +++  G    VG   K
Sbjct: 246 FEETFEQAVKVVRPGGTIANVGVYGK 271

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 53/270 (19%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKH----GDSKYPLVPGHEIVGIVKEVGHNVSRFK 86
              + +V I +   GV   D++    K+    G S    + G E+ G V  VG  VSR+K
Sbjct: 24  VPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASD---ILGLEVAGEVVAVGEGVSRWK 80

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
           VGD V                      CA              +  GGY+ Y+ V     
Sbjct: 81  VGDRV----------------------CA-------------LVAGGGYAEYVAVPAGQV 105

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAFGL 205
             +     L  AA L     TV++ + +    + G+++ +  G  G+G  A++  KAFG 
Sbjct: 106 LPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA 165

Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFDA 260
            V   +  + +K  A   LGAD  +   +   +E +KA   GK +D I+D   G +  + 
Sbjct: 166 RVFT-TAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSY-LNR 223

Query: 261 YMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
            +  L + G  V +GF    K   A L++G
Sbjct: 224 NIKALALDGRIVQIGFQGGRK---AELDLG 250

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 76.5 bits (189), Expect = 6e-16
 Identities = 68/261 (26%), Positives = 98/261 (37%), Gaps = 40/261 (15%)

Query: 35  DDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
            D  + +T   +C +D+   R  H  S    V GHE VG V EVG  V   KVGD V V 
Sbjct: 26  TDAIVKVTAAAICGSDLHIYRG-HIPSTPGFVLGHEFVGEVVEVGPEVRTLKVGDRV-VS 83

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
            +  +C +C YC  G    CA+      A         G  + Y+ V            P
Sbjct: 84  PFTIACGECFYCRRGQSGRCAKGGLFGYAG---SPNLDGAQAEYVRV------------P 128

Query: 155 LA----LAAP--------LLCAGI--TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFG 200
            A    L  P        LL   I  T Y    R    +PG ++ VIG G +G  AV   
Sbjct: 129 FADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR-AQVRPGDTVAVIGCGPVGLCAVLSA 187

Query: 201 KAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL------GKSLDFIIDTASG 254
           +  G           ++ E  + LGA+   ++ +  +          G+  D +++   G
Sbjct: 188 QVLGAARVFAVDPVPERLERAAALGAE--PINFEDAEPVERVREATEGRGADVVLEAVGG 245

Query: 255 DHPFDAYMSLLKVAGVYVLVG 275
               D    L++  GV   VG
Sbjct: 246 AAALDLAFDLVRPGGVISSVG 266

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 22/226 (9%)

Query: 35  DDVSITITHCGVCYADV--IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
           DDV + +   G+C +D+  I+   K+G   YP+  GHE  G V+ VG  V     GD V 
Sbjct: 26  DDVLVKVASSGLCGSDIPRIF---KNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVA 82

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND 152
               +  C  C  C  G    CA+  Y F      G+   GG + YIVV  +  + +  D
Sbjct: 83  C-VPLLPCFTCPECLRGFYSLCAK--YDFI-----GSRRDGGNAEYIVVKRKNLFALPTD 134

Query: 153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLS 211
            P+   A      ITV            GK++ +IG G +G +A++   A G   VT + 
Sbjct: 135 MPIEDGA--FIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192

Query: 212 TSTSKKEEALSLLGADKFVVSSDL--EQMKALGKSLDF---IIDTA 252
            ++ K   A S LGA +   S ++   Q++++ + L F   I++TA
Sbjct: 193 INSEKLALAKS-LGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237

Length = 347

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 71/264 (26%), Positives = 106/264 (40%), Gaps = 30/264 (11%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
             G  +V + +   G+C +DV  +   + GD   K P+V GHE  G V  VG  V+  KV
Sbjct: 19  EPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKV 78

Query: 88  GDHV----GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE 143
           GD V    GV      CR CE+C  G    C   +        DGT+ +     Y+    
Sbjct: 79  GDRVAIEPGV-----PCRTCEFCKSGRYNLC-PDMRFAATPPVDGTLCR-----YVNHPA 127

Query: 144 RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
            +C+K+ ++  L   A +    + V+    R    +PG ++ V G G +G +     KAF
Sbjct: 128 DFCHKLPDNVSLEEGALVEPLSVGVHA--CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAF 185

Query: 204 G-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIIDTASGD 255
           G   V V     S+ E A  L       V ++     A        GK  D +I+  +G 
Sbjct: 186 GATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE-CTGA 244

Query: 256 HP-FDAYMSLLKVAGVYVLVGFPS 278
                  +   +  G  VLVG   
Sbjct: 245 ESCIQTAIYATRPGGTVVLVGMGK 268

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 71/272 (26%), Positives = 96/272 (35%), Gaps = 37/272 (13%)

Query: 28  NRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYP-----LVPGHEIVGIVKEVGHNV 82
                   +V +     GVC  D      ++G    P     LV GHE +G+V+EVG   
Sbjct: 19  PEPEPTPGEVLVRTLEVGVCGTDREIVAGEYG--TAPPGEDFLVLGHEALGVVEEVGDG- 75

Query: 83  SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID-ADGTITKGGYSSYIVV 141
           S    GD V V T       C  C  G    C    YT   I    G + +     Y V 
Sbjct: 76  SGLSPGDLV-VPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMRE-----YFVD 129

Query: 142 HERYCYKIANDYPLA----LAAPLLCA------GITVYTPMMRHKMNQPGKSLGVIGLGG 191
              Y  K+     LA    L  PL            V   +       P ++L V+G G 
Sbjct: 130 DPEYLVKV--PPSLADVGVLLEPLSVVEKAIEQAEAVQKRLPT---WNPRRAL-VLGAGP 183

Query: 192 LGHMAVKFGKAFGLNVTVLSTS--TSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII 249
           +G +A    +  G  V VL+       K + +  LGA     S        L    D II
Sbjct: 184 IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243

Query: 250 DTASGD--HPFDAYMSLLKVAGVYVLVGFPSK 279
           + A+G     F+A +  L   GV +L G P  
Sbjct: 244 E-ATGVPPLAFEA-LPALAPNGVVILFGVPGG 273

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 16/183 (8%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           +V I I   G+C +D      K   + +P++ GHE  GIV+ VG  V+  K GD V +  
Sbjct: 34  EVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVKPGDKV-IPL 91

Query: 96  YVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT-------------ITKGGYSSYIVV 141
           +V  C  C  C +     C ++ +     +  DGT             +    +S Y VV
Sbjct: 92  FVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVV 151

Query: 142 HERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGK 201
            E    KI    PL     + C   T Y   +      PG +  V GLGG+G  A+   K
Sbjct: 152 DEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCK 211

Query: 202 AFG 204
           A G
Sbjct: 212 AAG 214

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 69/285 (24%), Positives = 107/285 (37%), Gaps = 42/285 (14%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           +V I I H  +C+ DV +   K     +P + GHE  GIV+ VG  V+  K GDHV +  
Sbjct: 29  EVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKPGDHV-LPV 87

Query: 96  YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGG------------------YSS 137
           +   C++C +C       C   +   N  D    I  G                   +S 
Sbjct: 88  FTGECKECRHCKSEKSNMC--DLLRIN-TDRGVMINDGKSRFSINGKPIYHFVGTSTFSE 144

Query: 138 YIVVHERYCYKIANDYPLALAAPLLCA-----GITVYTPMMRHKMNQPGKSLGVIGLGGL 192
           Y VVH     KI  + PL     L C      G       +     + G ++ + GLG +
Sbjct: 145 YTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKV-----KKGSTVAIFGLGAV 199

Query: 193 GHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ------MKALGKSLD 246
           G    +  +  G +  +       K E     G  +FV   D ++       +  G  +D
Sbjct: 200 GLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVD 259

Query: 247 FIID-TASGDHPFDAYMSLLKVAGVYVLVGFPSK---VKFSPASL 287
           +  + T + D    A+  +    GV VL+G P K       P +L
Sbjct: 260 YSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL 304

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 73.7 bits (181), Expect = 7e-15
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 28/230 (12%)

Query: 35  DDVSITITHCGVCYADV-IWTRNKHGD------SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
           D++ I +  CG+C +D+ ++  +K G       +++P+V GHE  G+V++ G NV  F+ 
Sbjct: 52  DEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEK 111

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           GD V     +  C  C  C  G   HC         +   G    G ++ YI V+ RY +
Sbjct: 112 GDPVTAEEMM-WCGMCRACRSGSPNHCK----NLKEL---GFSADGAFAEYIAVNARYAW 163

Query: 148 KIANDYPL----------ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAV 197
           +I     +          AL  P   A   ++    R    +PG  + V G G +G  A+
Sbjct: 164 EINELREIYSEDKAFEAGALVEPTSVAYNGLFI---RGGGFRPGAYVVVYGAGPIGLAAI 220

Query: 198 KFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF 247
              KA G +  +    + ++      +GAD     + +    +  K ++ 
Sbjct: 221 ALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV 270

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 23/236 (9%)

Query: 48  YADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYC 106
           Y D++    ++    K PL+P  +  G V  VG  V+RFKVGD V V T+  +  D    
Sbjct: 41  YRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRV-VPTFFPNWLDGPPT 99

Query: 107 NDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI 166
            +        S         DG + +     Y+V+ E    +  +      AA L CAG+
Sbjct: 100 AEDE-----ASAL---GGPIDGVLAE-----YVVLPEEGLVRAPDHLSFEEAATLPCAGL 146

Query: 167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA 226
           T +  +      +PG ++ V G GG+   A++F KA G  V + ++S+ +K E    LGA
Sbjct: 147 TAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARV-IATSSSDEKLERAKALGA 205

Query: 227 DKFV-VSSDLEQMKAL-----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGF 276
           D  +   +  +  + +     G+ +D +++           +  +   GV  L+GF
Sbjct: 206 DHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPGT-LAQSIKAVAPGGVISLIGF 260

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 21/261 (8%)

Query: 27  FNRRAVGSDDVSITITHCGVCYADVIWTRN---KHGDSKYPLVPGHEIVGIVKEVGHNVS 83
           F    +G  DV + +   G+C +DV + +         K P+V GHE  GI++EVG  V 
Sbjct: 34  FKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK 93

Query: 84  RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE 143
              VGD V +   + SC  C  C +G    C      F A         G  ++ +V   
Sbjct: 94  HLVVGDRVALEPGI-SCWRCNLCKEGRYNLCPE--MKFFATPP----VHGSLANQVVHPA 146

Query: 144 RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
             C+K+  +  L   A  +C  ++V     R     P  ++ V+G G +G + +   +AF
Sbjct: 147 DLCFKLPENVSLEEGA--MCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAF 204

Query: 204 GLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQM--------KALGKSLDFIIDTASG 254
           G    V+     ++      LGAD+ V VS+++E +        KA+G  +D   D    
Sbjct: 205 GAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGF 264

Query: 255 DHPFDAYMSLLKVAGVYVLVG 275
           +      +   +  G   LVG
Sbjct: 265 NKTMSTALEATRAGGKVCLVG 285

Length = 364

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSL 245
           G+G  AV+  KA G    +    + +K E    LGAD  +   D   +E+++ L  G+ +
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGV 60

Query: 246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS--KVKFSPASL 287
           D +ID        +  + LL+  G  V+VG P    V F    L
Sbjct: 61  DVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDL 104

Length = 131

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 30/223 (13%)

Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDA 126
           GHE VG+V+EVG  V+ FKVGD V +   ++SC  C YC  GL  HC    +   N I  
Sbjct: 59  GHEGVGVVEEVGSAVTNFKVGDRVLISC-ISSCGTCGYCRKGLYSHCESGGWILGNLI-- 115

Query: 127 DGT------ITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI--TVYTPMMRHKMN 178
           DGT      I     S Y +              +   A ++ + I  T Y   + +   
Sbjct: 116 DGTQAEYVRIPHADNSLYKLPEG-----------VDEEAAVMLSDILPTGYECGVLNGKV 164

Query: 179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ 237
           +PG ++ ++G G +G  A+   + +    + ++    ++ E A   LGA   V S+  + 
Sbjct: 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK-LGATHTVNSAKGDA 223

Query: 238 MKAL-----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG 275
           ++ +     G+ +D +I+       F+    L+   G    VG
Sbjct: 224 IEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVG 266

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 46/233 (19%)

Query: 64  PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNA 123
           P + G ++ G+V+ VG  V+RF+VGD V    Y         C  GL             
Sbjct: 58  PAILGCDVAGVVEAVGEGVTRFRVGDEV----Y--------GCAGGL------------- 92

Query: 124 IDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKS 183
               G   +G  + Y VV  R       +  +  AA L   GIT +  ++     Q G++
Sbjct: 93  ---GGL--QGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQT 147

Query: 184 LGV-IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD------KFVVSSDLE 236
           + +  G GG+GH+AV+  KA G  V   +T++S+K      LGAD      + VV    E
Sbjct: 148 VLIHGGAGGVGHVAVQLAKAAGARVY--ATASSEKAAFARSLGADPIIYYRETVV----E 201

Query: 237 QMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASL 287
            +     G+  D + DT  G+   DA    + + G  V +   +    +P S 
Sbjct: 202 YVAEHTGGRGFDVVFDTVGGET-LDASFEAVALYGRVVSILGGATHDLAPLSF 253

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 44/215 (20%)

Query: 51  VIWTRNK--HGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCND 108
           V W           YP VPG +  G+V  VG  V+ +KVGD V                 
Sbjct: 42  VDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKVGDRV----------------- 84

Query: 109 GLEVHCARSVYTFNAIDADGTITK-GGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT 167
                     Y  +       + + G ++ Y VV  R    + +      AA L CAG+T
Sbjct: 85  ---------AYHAS-------LARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLT 128

Query: 168 VYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA 226
            Y  + +    + G+++ + G  GG+G  AV+  K  GL   V++T + +  E +  LGA
Sbjct: 129 AYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL--RVITTCSKRNFEYVKSLGA 186

Query: 227 DKFVVSSDLEQMKAL-----GKSLDFIIDTASGDH 256
           D  +  +D +  + +     G+ +D ++DT  G+ 
Sbjct: 187 DHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGET 221

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 40/219 (18%)

Query: 64  PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNA 123
           P VPG +  G+V+ VG  V   KVGD                            V+  N 
Sbjct: 58  PYVPGSDGAGVVEAVGEGVDGLKVGD---------------------------RVWLTNL 90

Query: 124 IDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKS 183
               G    G  + Y+VV       + +       A L    +T Y  +      + G++
Sbjct: 91  --GWGRRQ-GTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGET 147

Query: 184 LGVIG-LGGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLLGADKFVVSSD---LEQM 238
           + V G  G +GH AV+  +  G    V++T S+++  E +   GAD           +++
Sbjct: 148 VLVHGGSGAVGHAAVQLARWAGA--RVIATASSAEGAELVRQAGADAVFNYRAEDLADRI 205

Query: 239 KAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG 275
            A   G+ +D II+  +  +     + +L   G  V+ G
Sbjct: 206 LAATAGQGVDVIIEVLANVN-LAKDLDVLAPGGRIVVYG 243

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 68/269 (25%), Positives = 101/269 (37%), Gaps = 48/269 (17%)

Query: 33  GSDDVSITITHCGVCYADVIWTR------NKHGDS---------------KYPLVPGHEI 71
              +V I +  CGV   D I TR         G +                +P + G +I
Sbjct: 27  APGEVLIRVGACGVNNTD-INTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADI 85

Query: 72  VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTIT 131
           VG V  VG  V   ++G+ V V                              ID  G+  
Sbjct: 86  VGRVVAVGEGVDTARIGERVLV-------DPSIR---------DPPEDDPADIDYIGSER 129

Query: 132 KGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN-QPGKSLGVIGL- 189
            GG++ Y VV     Y + +       A   C+  T     M  +     G+++ V G  
Sbjct: 130 DGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAEN--MLERAGVGAGETVLVTGAS 187

Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV--SSDLEQMKALGK-SLD 246
           GG+G   V+  K  G    V++ + + KEEA+  LGAD  ++  +  L   KALG   +D
Sbjct: 188 GGVGSALVQLAKRRG--AIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVD 245

Query: 247 FIIDTASGDHPFDAYMSLLKVAGVYVLVG 275
            + D   G   F   + LL+  G YV  G
Sbjct: 246 VVADVVGGPL-FPDLLRLLRPGGRYVTAG 273

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 67.2 bits (165), Expect = 9e-13
 Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 46/209 (22%)

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
             YP + G +  G V EVG  V+RFKVGD V             + + G           
Sbjct: 52  PSYPAILGCDFAGTVVEVGSGVTRFKVGDRV-----------AGFVHGGNPND------- 93

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT--------PM 172
                       G +  Y+V       KI ++     AA L    +T           P+
Sbjct: 94  ---------PRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPL 144

Query: 173 MRHKMNQPGKSLGVIGLGG---LGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF 229
              K +   K   V+  GG   +G +A++  K  G    V++T++ K  + +  LGAD  
Sbjct: 145 PPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYK--VITTASPKNFDLVKSLGADA- 201

Query: 230 VV---SSDLEQ--MKALGKSLDFIIDTAS 253
           V      D+ +    A G  L + +D  S
Sbjct: 202 VFDYHDPDVVEDIRAATGGKLRYALDCIS 230

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 66.3 bits (163), Expect = 2e-12
 Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 56/274 (20%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
             G  +V +  T  GV + D  + R+       P V G E  G+V+ VG  V+ FKVGD 
Sbjct: 23  EPGPGEVLVRNTAIGVNFID-TYFRSGLYPLPLPFVLGVEGAGVVEAVGPGVTGFKVGDR 81

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
           V             Y                           G Y+ Y VV      K+ 
Sbjct: 82  VA------------YAGPP-----------------------GAYAEYRVVPASRLVKLP 106

Query: 151 NDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-----GGLGHMAVKFGKAFGL 205
           +      AA LL  G+T +   +  +        G   L     GG+G +  ++ KA G 
Sbjct: 107 DGISDETAAALLLQGLTAH--YLLRETYPVKP--GDTVLVHAAAGGVGLLLTQWAKALG- 161

Query: 206 NVTVLST-STSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFD 259
             TV+ T S+ +K E     GAD  +   D   +E+++ +  G+ +D + D   G   F+
Sbjct: 162 -ATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYD-GVGKDTFE 219

Query: 260 AYMSLLKVAGVYVLVGFPSKV--KFSPASLNIGN 291
             +  L+  G  V  G  S     F    L+ G+
Sbjct: 220 GSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGS 253

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 59/289 (20%), Positives = 102/289 (35%), Gaps = 67/289 (23%)

Query: 21  VLSPYSFN-----RRAVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIV 72
           +  P  F      R   G   V + +  CGVC +D+  + + +        P  PGHE  
Sbjct: 1   LTGPGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGW 60

Query: 73  GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITK 132
           G V  +G  V    VGD V                                      ++ 
Sbjct: 61  GRVVALGPGVRGLAVGDRVAG------------------------------------LSG 84

Query: 133 GGYSSYIVVHERYCYKI-ANDYPLALAA-PLLCAGITVYTPMMRHKMNQPGKSLGVIGLG 190
           G ++ Y +    +   + +     A    PL CA   +   + R    + GK++ VIG G
Sbjct: 85  GAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCA---LN--VFRRGWIRAGKTVAVIGAG 139

Query: 191 GLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSL---LGADKFVVS---SDLEQMKAL-- 241
            +G + ++   A G   V  +     ++   L+L   LGA + V     + +E+++ L  
Sbjct: 140 FIGLLFLQLAAAAGARRVIAI----DRRPARLALARELGATEVVTDDSEAIVERVRELTG 195

Query: 242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
           G   D +I+      P D    L+   G  V+ G+    +  P  +   
Sbjct: 196 GAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYH---QDGPRPVPFQ 241

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 64.8 bits (159), Expect = 5e-12
 Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 33/225 (14%)

Query: 32  VGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVG 88
            G +DV I +    +C  DV I+  ++        P+V GHE VG V EVG  V+ FKVG
Sbjct: 23  PGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVG 82

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D V    ++  C  C  C  G   H  R+          G    G ++ Y+V+     +K
Sbjct: 83  DRVSGEGHIV-CGHCRNCRAG-RRHLCRNTKGV------GVNRPGAFAEYLVIPAFNVWK 134

Query: 149 IANDYPLALAA---PLLCAGITVYT-PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG 204
           I +D P  LAA   P   A  T  +  ++       G+ + + G G +G MA    K  G
Sbjct: 135 IPDDIPDDLAAIFDPFGNAVHTALSFDLV-------GEDVLITGAGPIGIMAAAVAKHVG 187

Query: 205 L-NVTVLSTSTSKKEEALSL---LGADKFVVSSD---LEQMKALG 242
             +V +    T   E  L L   +GA + V  +     + M  LG
Sbjct: 188 ARHVVI----TDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG 228

Length = 341

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 64.5 bits (158), Expect = 7e-12
 Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 51/231 (22%)

Query: 35  DDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           D+V + +   G+ + DV+         + PL  G E  GIV  VG  V+  KVGD V   
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDETPL--GLECSGIVTRVGSGVTGLKVGDRV--- 55

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
                                              +  G +++++ V  R   KI +   
Sbjct: 56  -------------------MG--------------LAPGAFATHVRVDARLVVKIPDSLS 82

Query: 155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI-GLGGLGHMAVKFGKAFGLNV--TVLS 211
              AA L  A +T Y  ++     Q G+S+ +    GG+G  A++  +  G  V  TV  
Sbjct: 83  FEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATV-- 140

Query: 212 TSTSKKEEALSLLGADKFVVSSD-----LEQMKAL--GKSLDFIIDTASGD 255
             + +K E L  LG     + S       + +     G+ +D ++++ SG+
Sbjct: 141 -GSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGE 190

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 36/216 (16%)

Query: 35  DDVSITITHCGVCYADVIWTRN-KHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           +   + IT  G+C +D+ + +  K G+   K P+V GHE++G +     + S  K G  V
Sbjct: 28  NGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQTV 85

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCAR-----SVYTFNAIDADGTITKGGYSSYIVVHERYC 146
            +      C  C+YC    E  C       S   F  +D       GG++ Y VV    C
Sbjct: 86  AINP-SKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVD-------GGFTRYKVVDTAQC 137

Query: 147 YKIANDYP---LALAAPLLCAGITVYTPMMRHKMNQPG----KSLGVIGLGGLGHMAVKF 199
                      +A A PL  A          H  +Q G    K + V G+G +G + V  
Sbjct: 138 IPYPEKADEKVMAFAEPLAVA---------IHAAHQAGDLQGKRVFVSGVGPIGCLIVAA 188

Query: 200 GKAFGLNVTVLSTSTSKKEEALSL-LGADKFVVSSD 234
            K  G    V +   S +  +L+  +GADK V   +
Sbjct: 189 VKTLGAAEIVCA-DVSPRSLSLAREMGADKLVNPQN 223

Length = 343

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 37/219 (16%)

Query: 45  GVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCE 104
           G+C  D+   +   G   +P VPGHE VGIV+E         VG  V VG    +C  CE
Sbjct: 35  GICNTDLEIYK---GYYPFPGVPGHEFVGIVEEGP---EAELVGKRV-VGEINIACGRCE 87

Query: 105 YCNDGLEVHCA-RSV---YTFNAIDADGTITKGGYSSYIVVHERYCYKIAN---DYPLAL 157
           YC  GL  HC  R+V      +          G ++ Y+ +     + + +   D     
Sbjct: 88  YCRRGLYTHCPNRTVLGIVDRD----------GAFAEYLTLPLENLHVVPDLVPDEQAVF 137

Query: 158 AAPLLCAG-ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK 216
           A PL  A  I    P+       PG  + V+G G LG +  +     G +V ++    S+
Sbjct: 138 AEPLAAALEILEQVPI------TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRH-SE 190

Query: 217 KEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGD 255
           K      LG +  V+  + E     G   D +++ A+G 
Sbjct: 191 KLALARRLGVE-TVLPDEAES---EGGGFDVVVE-ATGS 224

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 34  SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGV 93
             D  + +T   +C +D+          K   + GHE +G+V+EVG  V   KVGD V V
Sbjct: 25  PTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVGDRV-V 83

Query: 94  GTYVNSCRDCEYCNDGLEVHCARS 117
             +  +C +C YC  GL   C  +
Sbjct: 84  VPFTIACGECFYCKRGLYSQCDNT 107

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 42/231 (18%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKH-GDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G  +V I +    + + D++  R  +     YP  PG E  G+V+ VG +V+R  VGD V
Sbjct: 6   GPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEV 65

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
             GT                                   + GG+++ + V E    +   
Sbjct: 66  IAGTGE---------------------------------SMGGHATLVTVPEDQVVRKPA 92

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS 211
                 A  L    +TV     R  + +    L     GG G MAV+  +  G    + +
Sbjct: 93  SLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKG--AEIYA 150

Query: 212 TSTS-KKEEALSLLGADKFV--VSSDLEQ-MKAL--GKSLDFIIDTASGDH 256
           T++S  K E L  LG    +  V  D E+ +  L  G+ +D +I+T SG+ 
Sbjct: 151 TASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEA 201

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 28/275 (10%)

Query: 36  DVSITITHCGVCYADV-IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           +V I I +  +C+ D+  W         YP + GHE  GIV+ VG  V   K GDHV + 
Sbjct: 37  EVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDHV-IP 95

Query: 95  TYVNSCRDCEYCNDGLEVHCAR-SVYTFNAI-DADG----TITKGG-----------YSS 137
            +   C DC YC       C    V  F ++   DG    +    G           ++ 
Sbjct: 96  IFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTE 155

Query: 138 YIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN-QPGKSLGVIGLGGLGHMA 196
           Y V+      KI  + PL   + L C G++       +  N Q G S+ + GLG +G   
Sbjct: 156 YTVLDSACVVKIDPNAPLKKMSLLSC-GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAV 214

Query: 197 VKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ------MKALGKSLDFIID 250
            +  +A G +  +      +K E    +G   F+   D ++       +  G  +D+  +
Sbjct: 215 AEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFE 274

Query: 251 -TASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSP 284
              + +   +A++S     G+ VL+G     K  P
Sbjct: 275 CAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLP 309

Length = 381

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 54/233 (23%), Positives = 86/233 (36%), Gaps = 50/233 (21%)

Query: 49  ADVIWTRNKHGDSKY--PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYC 106
            D        G  K   PL PG+  VG V EVG  V+ FK GD V             +C
Sbjct: 4   LDTALEGLSTGTEKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRV-------------FC 50

Query: 107 NDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAA--PLLCA 164
                                     G ++  +VV       + +  P   AA   L   
Sbjct: 51  F-------------------------GPHAERVVVPANLLVPLPDGLPPERAALTALAAT 85

Query: 165 GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSL 223
            +      +R    + G+ + V+GLG +G +A +  KA G   V  +    +++E A +L
Sbjct: 86  ALNG----VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141

Query: 224 LGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGF 276
             AD     +     +  G+  D +I+ +      +  + LL+  G  VLVG+
Sbjct: 142 GPADP---VAADTADEIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGW 191

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 53/232 (22%)

Query: 50  DVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDG 109
           D             P + G +  G+V+ VG  V+ FKVGD V                  
Sbjct: 46  DTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTLFKVGDEV------------------ 87

Query: 110 LEVHCARSVYTFNAIDADGTITK-GGYSSYIVVHERYC-YKIAN-DYPLALAAPLLCAGI 166
                      + A    G IT+ G  + Y +V ER   +K  +  +  A A PL    +
Sbjct: 88  -----------YYA----GDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPL--TSL 130

Query: 167 TVYTPMM-RHKMNQP----GKSLGVI-GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKE-- 218
           T +  +  R  +++     GK+L +I G GG+G +A++  K     +TV++T  S+ E  
Sbjct: 131 TAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIAT-ASRPESI 188

Query: 219 EALSLLGADKFVV--SSDL-EQMKALG-KSLDFIIDTASGDHPFDAYMSLLK 266
             +  LGAD  V+    DL EQ++ALG + +D+I      D  +DA   L+ 
Sbjct: 189 AWVKELGAD-HVINHHQDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIA 239

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 35  DDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
            D  I +    VC +D+   R     ++ P   GHE VG+V+EVG  V+  K GD V + 
Sbjct: 26  TDAVIRVVATCVCGSDLWPYRG-VSPTRAPAPIGHEFVGVVEEVGSEVTSVKPGDFV-IA 83

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAID-----------ADGTITK 132
            +  S   C +C  G    C    +    +D           ADGT+ K
Sbjct: 84  PFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVK 132

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 59/279 (21%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGH------EIVGIVKEVGHNVSR 84
           A   +DV I ++  GV  AD +    + G  KYP  PG       E+ G V++VG +V R
Sbjct: 25  APKRNDVLIKVSAAGVNRADTL---QRQG--KYPPPPGSSEILGLEVAGYVEDVGSDVKR 79

Query: 85  FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER 144
           FK GD V                                      +  GGY+ Y V H+ 
Sbjct: 80  FKEGDRVM-----------------------------------ALLPGGGYAEYAVAHKG 104

Query: 145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAF 203
           +   I   Y    AA +  A +T +  + +H   + G+S+ +  G  G+G  A +  + +
Sbjct: 105 HVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKY 164

Query: 204 GLNVTVLSTSTSKKEEALSLLGADKFVVSSD----LEQMKAL--GKSLDFIIDTASGDHP 257
           G   T+++TS+ +K +    L A   +   D      ++K L   K ++ ++D   G + 
Sbjct: 165 GAA-TIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSY- 222

Query: 258 FDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
                 +L V G +++ GF    K    +L     PL R
Sbjct: 223 LSETAEVLAVDGKWIVYGFMGGAKVEKFNL----LPLLR 257

Length = 334

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           +V + +   G+C +D    R  +  +KYP V GHE  G++  VG  V   ++G+ V V  
Sbjct: 26  EVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDP 85

Query: 96  YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPL 155
            V SC  C  C+ G    C   V         G    GG+S Y VV  +  ++I +    
Sbjct: 86  -VISCGHCYPCSIGKPNVCTSLVVL-------GVHRDGGFSEYAVVPAKNAHRIPDAIAD 137

Query: 156 ALAA 159
             A 
Sbjct: 138 QYAV 141

Length = 339

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 59.3 bits (145), Expect = 4e-10
 Identities = 51/238 (21%), Positives = 92/238 (38%), Gaps = 55/238 (23%)

Query: 39  ITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN 98
           I +   G+ + DV+     +       V G E  G+V  VG  V+   VGD V       
Sbjct: 1   IEVRAAGLNFRDVLIALGLYPG---EAVLGGECAGVVTRVGPGVTGLAVGDRVMG----- 52

Query: 99  SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA 158
                                          +  G +++ +V   R    I + +    A
Sbjct: 53  -------------------------------LAPGAFATRVVTDARLVVPIPDGWSFEEA 81

Query: 159 APLLCAGITVYTPMMRHKMNQPGKSLGVI--GLGGLGHMAVKFGKAFGLNV--TVLSTST 214
           A +    +T Y  ++     +PG+S+ +I    GG+G  A++  +  G  V  T     +
Sbjct: 82  ATVPVVFLTAYYALVDLARLRPGESV-LIHAAAGGVGQAAIQLARHLGAEVFATA---GS 137

Query: 215 SKKEEALSLLG-ADKFVVSS-DL---EQMKAL--GKSLDFIIDTASGDHPFDAYMSLL 265
            +K + L  LG  D  + SS DL   +++     G+ +D ++++ SG+   DA +  L
Sbjct: 138 PEKRDFLRALGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLSGEF-LDASLRCL 194

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 29/151 (19%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKY------------PLVPGHEIVGIVKEVGH 80
           G  ++ + +  CG+C  D    +  HG   +            P++PGHE VG V E+G 
Sbjct: 23  GPGEILVKVEACGICAGD---IKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79

Query: 81  NVSR--FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVYTFNAIDADGTITKGGYSS 137
                  KVGD V +   +  C +C +CN G    C +  +Y F           GG + 
Sbjct: 80  GAEERGVKVGDRV-ISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQ------NNVNGGMAE 132

Query: 138 YIVV-HERYCYKIANDYPL---ALAAPLLCA 164
           Y+    E   +K+ +D P     L  PL CA
Sbjct: 133 YMRFPKEAIVHKVPDDIPPEDAILIEPLACA 163

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 57/226 (25%), Positives = 86/226 (38%), Gaps = 37/226 (16%)

Query: 32  VGSDDVSITITHCGVCY----------ADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHN 81
           +G  +V + +   GV Y                R + G  +   + G +  GIV  VG  
Sbjct: 40  LGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEG 99

Query: 82  VSRFKVGDHVGVGTYVNSCRDCEYCN--DGLEVHCARSVYTFNAIDADGTI-----TKGG 134
           V  +KVGD V V           +C+  DG +   A     F   D    I       G 
Sbjct: 100 VKNWKVGDEVVV-----------HCSVWDGNDPERAGGDPMF---DPSQRIWGYETNYGS 145

Query: 135 YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ--PGKSLGVIG-LGG 191
           ++ + +V                AA  +  G T Y  +     N   PG ++ + G  GG
Sbjct: 146 FAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGG 205

Query: 192 LGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE 236
           LG MA++  +A G N V V+S S  K E   + LGA+  +   D +
Sbjct: 206 LGSMAIQLARAAGANPVAVVS-SEEKAEYCRA-LGAEGVINRRDFD 249

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 63/258 (24%), Positives = 93/258 (36%), Gaps = 45/258 (17%)

Query: 35  DDVSITITHCGVCYADVIWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
            DV I + +  V Y D + +    G    +YP +PG ++ G V E      RFK GD V 
Sbjct: 28  GDVLIRVAYSSVNYKDGLASI-PGGKIVKRYPFIPGIDLAGTVVESND--PRFKPGDEVI 84

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND 152
           V +Y             L                 G    GGYS Y  V   +   +   
Sbjct: 85  VTSY------------DL-----------------GVSHHGGYSEYARVPAEWVVPLPKG 115

Query: 153 YPLALAAPLLCAGIT----VYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNV 207
             L  A  L  AG T    ++  +  + +      + V G  GG+G +AV      G  V
Sbjct: 116 LTLKEAMILGTAGFTAALSIHR-LEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEV 174

Query: 208 TVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKALGKSL-DFIIDTASGDHPFDAYMSL 264
            V ST  +   + L  LGA + +   +L  E +K L K      +D   G       +S 
Sbjct: 175 -VASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGKT-LAYLLST 232

Query: 265 LKVAGVYVLVGFPSKVKF 282
           L+  G   + G     + 
Sbjct: 233 LQYGGSVAVSGLTGGGEV 250

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 44/221 (19%)

Query: 32  VGSDDVSITITHCGVCYADVIWT-----------RNKHGDSKYPL-VPGHEIVGIVKEVG 79
           +G  +V + +   GV Y +V W              K+G    P  + G +  G+V  VG
Sbjct: 35  LGPGEVLVAVMAAGVNYNNV-WAALGEPVSTFAFLRKYGKLDLPFHIIGSDASGVVWRVG 93

Query: 80  HNVSRFKVGDHVGVGTYVNSC----RDCEYCNDGLEVHCA-RSVYTFNAIDADGTITKGG 134
             V+R+KVGD V     V SC           DG  +  + + ++ +           G 
Sbjct: 94  PGVTRWKVGDEV-----VASCLQVDLTAPDGRDGDPMLSSEQRIWGYETNF-------GS 141

Query: 135 YSSYIVVHERYCYKIANDYPLAL-----AAPLLCAGITVYTPMMRHKMN--QPGKSLGVI 187
           ++ + +V +          P  L     A P L    T Y  ++       +PG ++ + 
Sbjct: 142 FAEFALVKDYQLMP----KPKHLTWEEAACPGLTGA-TAYRQLVGWNPAAVKPGDNVLIW 196

Query: 188 GL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD 227
           G  GGLG  A +  +A G N   + +S  K E   S LGA+
Sbjct: 197 GAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRS-LGAE 236

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 58/209 (27%), Positives = 84/209 (40%), Gaps = 48/209 (22%)

Query: 52  IWTRNKHGDS-KYPLVPGHEIVGIVKEVGHNVSRFKVGDHV-----GVGTYVNSCRDCEY 105
           I+TR  H  S K+P V G E VG V+E       F  G  V     G+G           
Sbjct: 44  IFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAMGGMGR---------- 91

Query: 106 CNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG 165
                         TF+          G Y+ Y +V     Y I +D   A  A L    
Sbjct: 92  --------------TFD----------GSYAEYTLVPNEQVYAIDSDLSWAELAALPETY 127

Query: 166 ITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSL 223
            T +  + R    QPG +L + G    +G  A+K  KA G   TV +T+ S ++   L  
Sbjct: 128 YTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA--TVTATTRSPERAALLKE 185

Query: 224 LGADKFVV--SSDLEQMKALGKSLDFIID 250
           LGAD+ V+   +  EQ++A     D +++
Sbjct: 186 LGADEVVIDDGAIAEQLRAAPGGFDKVLE 214

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 55.7 bits (134), Expect = 7e-09
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 34/224 (15%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           ++ I +    +C +D+    ++   + +P + GHE  GIV+ +G  V+ F+ GDHV +  
Sbjct: 39  EIRIKVVSTSLCRSDLSAWESQ---ALFPRIFGHEASGIVESIGEGVTEFEKGDHV-LTV 94

Query: 96  YVNSCRDCEYCNDGLEVHC----------------------ARSVYTFNAIDADGTITKG 133
           +   C  C +C  G    C                       + VY + A+ +       
Sbjct: 95  FTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSS------- 147

Query: 134 GYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLG 193
            +S Y VVH     K+    PL     L C                 G S+ + GLG +G
Sbjct: 148 -FSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVG 206

Query: 194 HMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ 237
               +  K  G +  +      +K E     G   F+  +DL +
Sbjct: 207 LSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSE 250

Length = 378

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 64/261 (24%), Positives = 93/261 (35%), Gaps = 37/261 (14%)

Query: 29  RRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
               G +D  +  T    C +DV          ++ ++ GHE VG+V+EVG  V  FK G
Sbjct: 19  IPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPG 78

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHC--ARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
           D V V   +           G           + F           G ++ Y  V     
Sbjct: 79  DRVIVPA-ITPDWRSVAAQRGYPSQSGGMLGGWKF------SNFKDGVFAEYFHV----- 126

Query: 147 YKIANDYPLALAAPLLCAGIT----VYTP-MM-------RHKMNQPGKSLGVIGLGGLGH 194
               ND    LA   L  G+T    V  P MM            + G ++ V G+G +G 
Sbjct: 127 ----NDADANLA--PLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGL 180

Query: 195 MAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL--GKSLDFII 249
           MAV   +  G    +   S   + E     GA   V       +EQ+  L  GK +D +I
Sbjct: 181 MAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVI 240

Query: 250 DTASGDHPFDAYMSLLKVAGV 270
               G   F+  + +LK  G 
Sbjct: 241 IAGGGQDTFEQALKVLKPGGT 261

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 46/252 (18%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKH-GDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G  +V +     G+  +D+ +T  ++    K P   G E VG V  VG  V+ FKVGD V
Sbjct: 29  GPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAV 88

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                                                T++ G ++ Y VV  R+   +  
Sbjct: 89  A------------------------------------TMSFGAFAEYQVVPARHAVPVPE 112

Query: 152 DYPLALAAPLLCAGITVYTPM-MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVL 210
             P  L  PLL +G+T    +    +M      L     GG G  AV+  K  G +V + 
Sbjct: 113 LKPEVL--PLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHV-IG 169

Query: 211 STSTSKKEEALSLLGADKFVV--SSDLEQ--MKALGKSLDFIIDTASGDHPFDAYMSLLK 266
           + S+ +K E L  LG D+ +   + DL +   K   K +D + ++  G+  FD  +  L 
Sbjct: 170 TCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGEM-FDTCVDNLA 228

Query: 267 VAGVYVLVGFPS 278
           + G  +++GF S
Sbjct: 229 LKGRLIVIGFIS 240

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 47/233 (20%)

Query: 64  PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNA 123
           P + G +  G+V  VG  V+ FK GD V                             + A
Sbjct: 59  PKILGWDAAGVVVAVGDEVTLFKPGDEV-----------------------------WYA 89

Query: 124 IDADGTITK-GGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMM-RHKMNQPG 181
               G I + G  + + +V ER           A AA L    IT +  +  R  +N P 
Sbjct: 90  ----GDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPV 145

Query: 182 ----KSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL-LGADKFVV--SS 233
               ++L +IG  GG+G + ++  +     +TV++T++  + +   L LGA   V+  S 
Sbjct: 146 AGDKRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLELGAH-HVIDHSK 203

Query: 234 DL-EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSP 284
            L  Q++ LG +++ ++      D  F   + LL   G + L+  P+++  SP
Sbjct: 204 PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDPAELDISP 256

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 57/253 (22%), Positives = 76/253 (30%), Gaps = 73/253 (28%)

Query: 64  PLVPGHEIVGIVKEVGHNVSRFKVGDHV-----GVGTYVNSCRDCEYCNDGLEVHCARSV 118
           P V G+E VG V +VG  V   K GD V     G+GT                       
Sbjct: 64  PAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGT----------------------- 100

Query: 119 YTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN 178
                           + ++ VV      K+ ND     AA L     T Y   +     
Sbjct: 101 ----------------WRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAY--RLLEDFV 142

Query: 179 --QPGKSLGVI---GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA---LSLLGADKFV 230
             QPG    VI       +G   ++  K  G+    +       EE    L  LGAD  +
Sbjct: 143 KLQPGDW--VIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200

Query: 231 VSSDL------EQMKALGKS-----LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
              +L      E +K+         L+       G         LL   G  V  G  S 
Sbjct: 201 TEEELRSLLATELLKSAPGGRPKLALN-----CVGGKSATELARLLSPGGTMVTYGGMSG 255

Query: 280 VKFS-PASLNIGN 291
              + P SL I  
Sbjct: 256 QPVTVPTSLLIFK 268

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 49/246 (19%), Positives = 76/246 (30%), Gaps = 52/246 (21%)

Query: 63  YPLVPGHEIVGIVKEVGHNVSRFKVGDHV----GVGTYVNSCRDCEYCNDGLEVHCARSV 118
            P VPG+E VG+V EVG  VS   VG  V    G GT                       
Sbjct: 56  LPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGGEGT----------------------- 92

Query: 119 YTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN 178
                           +  Y+V        + +      AA L    +T +  +  +   
Sbjct: 93  ----------------WQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKL 136

Query: 179 QPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ 237
            PG  +        +G M ++  K  G     +     + EE L  LGAD+ + SS  + 
Sbjct: 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEE-LKALGADEVIDSSPEDL 195

Query: 238 MKAL-----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNA 292
            + +     G      +D   G+         L+  G  V  G  S     P   ++   
Sbjct: 196 AQRVKEATGGAGARLALDAVGGES-ATRLARSLRPGGTLVNYGLLSGEPV-PFPRSVFIF 253

Query: 293 PLFRFK 298
                +
Sbjct: 254 KDITVR 259

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGV 93
           D  + IT   +C +D+       G +  +  LV GHE +G V+EVG  V   KVGD V V
Sbjct: 27  DAIVRITTTAICGSDL---HMYRGRTGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVV 83

Query: 94  GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGY 135
             +  +C  C  C  GL   C  +V    A  A G +  G Y
Sbjct: 84  -PFNVACGRCRNCKRGLTGVCL-TVNPGRAGGAYGYVDMGPY 123

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 55/206 (26%), Positives = 75/206 (36%), Gaps = 47/206 (22%)

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
            YP  PG +  G V        RF+ GD V V  Y             L           
Sbjct: 56  NYPHTPGIDAAGTVVSSDDP--RFREGDEVLVTGY------------DL----------- 90

Query: 122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
                 G  T GG++ Y+ V   +   +     L  A  L  AG T    +  H++   G
Sbjct: 91  ------GMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFT--AALSVHRLEDNG 142

Query: 182 KS--LGVI----GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA--LSLLGADKFVVSS 233
           ++   G +      GG+G +AV      G  V  L   T K+E+A  L  LGA + +   
Sbjct: 143 QTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVAL---TGKEEQADYLKSLGASEVLDRE 199

Query: 234 DLEQM--KALGKSL-DFIIDTASGDH 256
           DL     K L K+     IDT  GD 
Sbjct: 200 DLLDESKKPLLKARWAGAIDTVGGDV 225

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 47/206 (22%), Positives = 72/206 (34%), Gaps = 46/206 (22%)

Query: 44  CGVCYADVIWTRNKH-----------GDSKYPLVPGHEIVGIVKEVGHNVS-RFKVGDHV 91
           CG+C +D+  T +              D    +V GHE  G V + G     + KVG  V
Sbjct: 33  CGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRV 92

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                +  C     C  GL                      GGY+ Y+++ E    ++ +
Sbjct: 93  TSLPLL-LCGQGASCGIGL-----------------SPEAPGGYAEYMLLSEALLLRVPD 134

Query: 152 DYPLALAA---PLLCAGITVYTPMMRHKMN----QPGKSLGVIGLGGLGHMAVKFGKAFG 204
              +  AA   PL             H +      PG+   VIG G +G   +   KA G
Sbjct: 135 GLSMEDAALTEPLAVG---------LHAVRRARLTPGEVALVIGCGPIGLAVIAALKARG 185

Query: 205 LNVTVLSTSTSKKEEALSLLGADKFV 230
           +   V S  + ++      +GAD  V
Sbjct: 186 VGPIVASDFSPERRALALAMGADIVV 211

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 68/253 (26%), Positives = 90/253 (35%), Gaps = 50/253 (19%)

Query: 36  DVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           DV I + +  + Y D +    K G    YP++PG +  G V  V     RF+ GD V V 
Sbjct: 28  DVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTV--VSSEDPRFREGDEVIVT 85

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
            Y            GL                 G    GGYS Y  V   +   +     
Sbjct: 86  GY------------GL-----------------GVSHDGGYSQYARVPADWLVPLPEGLS 116

Query: 155 LALAAPLLCAGITVYTPMM------RHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNV 207
           L  A  L  AG   +T  +      R+ +      + V G  GG+G +AV      G  V
Sbjct: 117 LREAMALGTAG---FTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEV 173

Query: 208 TVLSTSTSKKEEA--LSLLGADKFVVSSDLEQ-MKALGKSL-DFIIDTASGDHPFDAYMS 263
                ST K EE   L  LGA + +   DL    K L K      +DT  G H     ++
Sbjct: 174 V---ASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTV-GGHTLANVLA 229

Query: 264 LLKVAGVYVLVGF 276
            LK  G     G 
Sbjct: 230 QLKYGGAVAACGL 242

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV 230
           GK+LG++GLG +G    + G+AFG+ V   S++ +   E  +  G +  V
Sbjct: 142 GKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLT--AERAAAAGVEAAV 189

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 65  LVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV--NSCRDCEYCNDG--LEVHCARSVYT 120
           LV GHEI G V E G +V   K+GD V V   +    CR+C+  + G  L V+ AR+   
Sbjct: 63  LVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAA 122

Query: 121 FNAIDADGTITKGGYSSYIVV 141
           +  +D  G +  GG S Y++V
Sbjct: 123 YGYVDMGGWV--GGQSEYVMV 141

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA 226
             + P+M    +  GK++G+IG G +G    +  K FG+   +L  S ++K EA   LGA
Sbjct: 136 VAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMR--ILYYSRTRKPEAEKELGA 193

Query: 227 D 227
           +
Sbjct: 194 E 194

Length = 333

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK++G+IGLG +G    K  KAFG+ V      + ++       G D  V    L+++  
Sbjct: 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERA-----GVDGVVGVDSLDEL-- 194

Query: 241 LGKSLDFII 249
           L ++ D + 
Sbjct: 195 LAEA-DILT 202

Length = 324

>gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 60/235 (25%), Positives = 83/235 (35%), Gaps = 60/235 (25%)

Query: 63  YPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFN 122
           YPLVPG+E VG V E G +   F+ GD V    +V        C + +     R ++   
Sbjct: 58  YPLVPGYESVGRVVEAGPDTG-FRPGDRV----FVPGSN----CYEDV-----RGLF--- 100

Query: 123 AIDADGTITKGGYSSYIVVH-ERYCY--KIAND----YPLALAAPLLCAGITVYTPMMRH 175
                     GG S  +V    R C              LA  A    AG  V       
Sbjct: 101 ----------GGASKRLVTPASRVCRLDPALGPQGALLALAATARHAVAGAEVKVL---- 146

Query: 176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSD 234
                   L ++G G LG +  +  KA G +   V  T+  +++ A         V+  +
Sbjct: 147 ------PDL-IVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-----VLDPE 194

Query: 235 LEQMKALGKSLDFIIDTASGDHP-FDAYMSLLKVAGVYVLVGF---PSKVKFSPA 285
            +      +    I D ASGD    D  +  L   G  VL GF   P    F PA
Sbjct: 195 KDP----RRDYRAIYD-ASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPA 244

[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
            GK+LGVIGLG +G +      A G+ V       S  E A  L    + V S     ++
Sbjct: 134 RGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYLS-VEAAWKLSVEVQRVTS-----LE 187

Query: 240 ALGKSLDFI 248
            L  + D+I
Sbjct: 188 ELLATADYI 196

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL 221
           GK++G+IGLG +G    +  KAFG+ V         + EAL
Sbjct: 35  GKTVGIIGLGRIGRAVARRLKAFGMKVIAYDRYPKAEAEAL 75

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK++  +G G +G    K  KAFG+ V  ++TS    E        DK      LE++  
Sbjct: 135 GKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVE------YFDK-CYP--LEELDE 185

Query: 241 LGKSLDFIID----TASGDHPFD-AYMSLLKVAGVYVLVG 275
           + K  D +++    T    H FD A+   +K   +++ VG
Sbjct: 186 VLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVG 225

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL 223
           GK++G++G G +G    +  KAFG    VL+ S S+KEEA +L
Sbjct: 144 GKTVGIVGTGAIGLRVARLFKAFGCK--VLAYSRSEKEEAKAL 184

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 9/69 (13%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           GK+LG++G+G +G    +  K FG+   +L  + S+K EA   LGA ++V    L+++  
Sbjct: 144 GKTLGIVGMGRIGQAVARRAKGFGMK--ILYHNRSRKPEAEEELGA-RYV---SLDEL-- 195

Query: 241 LGKSLDFII 249
           L +S DF+ 
Sbjct: 196 LAES-DFVS 203

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKK------EEALSLLGADKFVVSS 233
            KSLG++G GG+G       KAFG+N+   + S           E   ++    FV+ S
Sbjct: 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLIS 180

Length = 303

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 181 GKSLGVIGLGGLG-HMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           GK++ ++GLG +G  +A +  KAFG+ V  +  S             D+     +L++  
Sbjct: 134 GKTVLIVGLGDIGREIARRA-KAFGMRVIGVRRSGRPAPPV-----VDEVYTPDELDE-- 185

Query: 240 ALGKSLDFII 249
            L ++ D+++
Sbjct: 186 LLPEA-DYVV 194

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 33/98 (33%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKK---------EEALSLLGADKFVV 231
           GK+LG+IG G +G    +  +AFG+ V   +               +E L+   +D  V+
Sbjct: 147 GKTLGIIGYGNIGQAVARIARAFGMKVLF-AERKGAPPLREGYVSLDELLAQ--SD--VI 201

Query: 232 S---------------SDLEQMKALGKSLDFIIDTASG 254
           S                +L +MK        +I+TA G
Sbjct: 202 SLHCPLTPETRNLINAEELAKMK---PGA-ILINTARG 235

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 54/210 (25%), Positives = 74/210 (35%), Gaps = 58/210 (27%)

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHV-----GVGTYVNSCRDCEYCNDGLEVHCAR 116
            +PLVPG ++ G V E      RFK GD V     GVG                E H   
Sbjct: 56  TFPLVPGIDLAGTVVESSS--PRFKPGDRVVLTGWGVG----------------ERH--- 94

Query: 117 SVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMM--- 173
                           GGY+    V   +   +        A  +  AG   +T M+   
Sbjct: 95  ---------------WGGYAQRARVKADWLVPLPEGLSARQAMAIGTAG---FTAMLCVM 136

Query: 174 ---RHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA--LSLLGAD 227
               H +      + V G  GG+G +AV      G  V     ST + EEA  L  LGA 
Sbjct: 137 ALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVV---ASTGRPEEADYLRSLGAS 193

Query: 228 KFVVSSDL-EQMKALGKSL-DFIIDTASGD 255
           + +  ++L E  + L K      +DT  G 
Sbjct: 194 EIIDRAELSEPGRPLQKERWAGAVDTVGGH 223

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 22/110 (20%)

Query: 156 ALAAPLLCAG-ITVYTPMMR----HKMNQP--------GKSLGVIGLGGLGHMAVKFGKA 202
           ALA  L  A  I  Y   +R    H             GK++G++G G +G    +  KA
Sbjct: 99  ALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKA 158

Query: 203 FGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTA 252
           FG+ V  +  S S KE+     GAD     SDL+  +AL ++ D ++   
Sbjct: 159 FGMRVIGV--SRSPKEDE----GADFVGTLSDLD--EALEQA-DVVVVAL 199

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD 227
           GK++G++GLG +G    K  +AFG+   VL    ++K E    LG  
Sbjct: 140 GKTVGIVGLGRIGQRVAKRLQAFGMK--VLYYDRTRKPEPEEDLGFR 184

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.98
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.98
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.98
PTZ00354	334	alcohol dehydrogenase; Provisional	99.98
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.97
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.97
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.97
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.97
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.97
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.97
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.97
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.97
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.97
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.96
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.96
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.96
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.96
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.96
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.95
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.95
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.95
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.95
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.94
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.94
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.9
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.89
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.88
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.86
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.59
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.13
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.68
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.64
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.59
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.4
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.36
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.34
PLN02494	477	adenosylhomocysteinase	98.24
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.24
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.22
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.14
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.07
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.05
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.01
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.93
PRK08324	681	short chain dehydrogenase; Validated	97.92
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.85
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.83
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.82
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.82
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.76
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.65
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.54
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.54
PLN03209	576	translocon at the inner envelope of chloroplast su	97.53
PRK12742	237	oxidoreductase; Provisional	97.53
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.53
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.51
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.46
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.44
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.44
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.44
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.41
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.4
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.39
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.38
PRK08265	261	short chain dehydrogenase; Provisional	97.35
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.35
PRK06182	273	short chain dehydrogenase; Validated	97.32
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.3
PRK05693	274	short chain dehydrogenase; Provisional	97.29
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.28
PRK05993	277	short chain dehydrogenase; Provisional	97.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.27
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.25
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.24
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.23
PRK08618	325	ornithine cyclodeaminase; Validated	97.21
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.21
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.19
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.18
PRK05872	296	short chain dehydrogenase; Provisional	97.17
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.17
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.17
PRK07109	334	short chain dehydrogenase; Provisional	97.16
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.15
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.14
PRK08339	263	short chain dehydrogenase; Provisional	97.14
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.14
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.12
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.09
PRK12939	250	short chain dehydrogenase; Provisional	97.09
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.08
PRK07060	245	short chain dehydrogenase; Provisional	97.07
PRK06139	330	short chain dehydrogenase; Provisional	97.07
PRK06057	255	short chain dehydrogenase; Provisional	97.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.04
PRK09186	256	flagellin modification protein A; Provisional	97.04
PRK07326	237	short chain dehydrogenase; Provisional	97.04
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.04
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.03
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.03
PRK06484	520	short chain dehydrogenase; Validated	97.02
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.99
PRK08267	260	short chain dehydrogenase; Provisional	96.99
PRK07806	248	short chain dehydrogenase; Provisional	96.98
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.98
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.97
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.96
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.96
PLN00203	519	glutamyl-tRNA reductase	96.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.94
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	96.94
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.9
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.89
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.89
PRK12829	264	short chain dehydrogenase; Provisional	96.88
PRK12367	245	short chain dehydrogenase; Provisional	96.88
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.87
PRK07340	304	ornithine cyclodeaminase; Validated	96.87
PRK07825	273	short chain dehydrogenase; Provisional	96.85
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.82
PRK06196	315	oxidoreductase; Provisional	96.81
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.81
PRK06500	249	short chain dehydrogenase; Provisional	96.78
PRK07832	272	short chain dehydrogenase; Provisional	96.78
CHL00194	317	ycf39 Ycf39; Provisional	96.78
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.78
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.77
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.76
PRK05866	293	short chain dehydrogenase; Provisional	96.76
PRK04457	262	spermidine synthase; Provisional	96.75
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.74
PRK07063	260	short chain dehydrogenase; Provisional	96.73
PRK08263	275	short chain dehydrogenase; Provisional	96.73
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.72
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.72
PRK07062	265	short chain dehydrogenase; Provisional	96.69
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.69
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.69
PRK07576	264	short chain dehydrogenase; Provisional	96.67
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.67
PRK09072	263	short chain dehydrogenase; Provisional	96.65
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.65
PRK07831	262	short chain dehydrogenase; Provisional	96.65
PRK05867	253	short chain dehydrogenase; Provisional	96.65
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.64
PRK05854	313	short chain dehydrogenase; Provisional	96.64
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.64
PRK12828	239	short chain dehydrogenase; Provisional	96.63
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.63
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.63
PRK06128	300	oxidoreductase; Provisional	96.63
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.62
PLN02366	308	spermidine synthase	96.62
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.6
PRK07814	263	short chain dehydrogenase; Provisional	96.6
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.6
PRK05717	255	oxidoreductase; Validated	96.6
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.58
PRK06949	258	short chain dehydrogenase; Provisional	96.57
PRK09291	257	short chain dehydrogenase; Provisional	96.57
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.57
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.57
COG2910	211	Putative NADH-flavin reductase [General function p	96.55
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.55
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.55
PRK00811	283	spermidine synthase; Provisional	96.54
PRK06180	277	short chain dehydrogenase; Provisional	96.53
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.53
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.51
PRK06484	520	short chain dehydrogenase; Validated	96.51
PRK07478	254	short chain dehydrogenase; Provisional	96.51
PRK05876	275	short chain dehydrogenase; Provisional	96.5
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.5
PRK07890	258	short chain dehydrogenase; Provisional	96.5
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.5
PRK07024	257	short chain dehydrogenase; Provisional	96.49
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	96.49
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.49
PRK06194	287	hypothetical protein; Provisional	96.49
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.47
PRK01581	374	speE spermidine synthase; Validated	96.47
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.47
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.46
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.46
PRK06101	240	short chain dehydrogenase; Provisional	96.45
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.44
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.43
PLN02253	280	xanthoxin dehydrogenase	96.43
PRK07574	385	formate dehydrogenase; Provisional	96.41
PLN03075	296	nicotianamine synthase; Provisional	96.39
PRK08589	272	short chain dehydrogenase; Validated	96.39
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.39
PRK08017	256	oxidoreductase; Provisional	96.38
PRK05884	223	short chain dehydrogenase; Provisional	96.36
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.35
PRK07985	294	oxidoreductase; Provisional	96.34
PRK07067	257	sorbitol dehydrogenase; Provisional	96.34
PRK08177	225	short chain dehydrogenase; Provisional	96.33
PRK09242	257	tropinone reductase; Provisional	96.33
PRK06940	275	short chain dehydrogenase; Provisional	96.33
PRK06841	255	short chain dehydrogenase; Provisional	96.32
PRK07677	252	short chain dehydrogenase; Provisional	96.31
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.3
PRK06483	236	dihydromonapterin reductase; Provisional	96.3
PRK08862	227	short chain dehydrogenase; Provisional	96.28
PRK06125	259	short chain dehydrogenase; Provisional	96.27
PRK07774	250	short chain dehydrogenase; Provisional	96.25
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.24
PRK08643	256	acetoin reductase; Validated	96.24
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.23
PRK06138	252	short chain dehydrogenase; Provisional	96.23
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.22
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.21
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.2
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.2
PRK05875	276	short chain dehydrogenase; Provisional	96.18
PRK07035	252	short chain dehydrogenase; Provisional	96.17
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.17
PRK13243	333	glyoxylate reductase; Reviewed	96.15
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.15
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.15
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.15
PRK08317	241	hypothetical protein; Provisional	96.15
PRK06197	306	short chain dehydrogenase; Provisional	96.14
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.14
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.13
PRK06172	253	short chain dehydrogenase; Provisional	96.13
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.12
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.11
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.11
PRK08291	330	ectoine utilization protein EutC; Validated	96.11
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.1
PLN03139	386	formate dehydrogenase; Provisional	96.1
PRK07074	257	short chain dehydrogenase; Provisional	96.09
PRK04148	134	hypothetical protein; Provisional	96.09
PLN02928	347	oxidoreductase family protein	96.09
PRK06482	276	short chain dehydrogenase; Provisional	96.08
PRK10538	248	malonic semialdehyde reductase; Provisional	96.08
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.06
PRK06720	169	hypothetical protein; Provisional	96.06
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.06
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.05
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.05
PRK07454	241	short chain dehydrogenase; Provisional	96.04
PRK07069	251	short chain dehydrogenase; Validated	96.04
PRK03612	521	spermidine synthase; Provisional	96.03
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.03
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.02
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.02
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.02
PRK06181	263	short chain dehydrogenase; Provisional	96.01
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	96.01
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.01
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.0
PLN02823	336	spermine synthase	95.99
PRK06701	290	short chain dehydrogenase; Provisional	95.99
PRK12747	252	short chain dehydrogenase; Provisional	95.97
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.95
PRK14982	340	acyl-ACP reductase; Provisional	95.93
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.91
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.91
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.91
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.9
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.88
PRK07791	286	short chain dehydrogenase; Provisional	95.88
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.88
PRK08251	248	short chain dehydrogenase; Provisional	95.87
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.86
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.85
PRK08703	239	short chain dehydrogenase; Provisional	95.84
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.82
PRK07904	253	short chain dehydrogenase; Provisional	95.82
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.82
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.82
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.81
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.81
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.81
KOG0725	270	consensus Reductases with broad range of substrate	95.81
PRK06198	260	short chain dehydrogenase; Provisional	95.8
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.79
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.79
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.79
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.79
PRK06914	280	short chain dehydrogenase; Provisional	95.78
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.78
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.77
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.77
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.77
PRK06046	326	alanine dehydrogenase; Validated	95.76
PRK06141	314	ornithine cyclodeaminase; Validated	95.75
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.74
PRK06179	270	short chain dehydrogenase; Provisional	95.74
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.73
PRK12937	245	short chain dehydrogenase; Provisional	95.73
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.73
PRK07402	196	precorrin-6B methylase; Provisional	95.73
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.73
PRK12480	330	D-lactate dehydrogenase; Provisional	95.73
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.73
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.72
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.72
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.71
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.7
KOG1208	314	consensus Dehydrogenases with different specificit	95.68
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.67
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.66
PRK11207	197	tellurite resistance protein TehB; Provisional	95.66
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.65
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.63
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	95.62
PLN02780	320	ketoreductase/ oxidoreductase	95.62
PRK14967	223	putative methyltransferase; Provisional	95.61
PRK10669	558	putative cation:proton antiport protein; Provision	95.61
COG4122	219	Predicted O-methyltransferase [General function pr	95.61
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.6
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.59
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.58
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	95.58
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.57
PRK06398	258	aldose dehydrogenase; Validated	95.57
PRK07417	279	arogenate dehydrogenase; Reviewed	95.57
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.56
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.56
TIGR00438	188	rrmJ cell division protein FtsJ.	95.56
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.55
PRK08655	437	prephenate dehydrogenase; Provisional	95.55
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.54
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.54
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.54
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.53
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.53
PRK06823	315	ornithine cyclodeaminase; Validated	95.52
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.52
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.52
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.51
PRK07775	274	short chain dehydrogenase; Provisional	95.51
PRK06114	254	short chain dehydrogenase; Provisional	95.5
PRK08219	227	short chain dehydrogenase; Provisional	95.5
PRK06953	222	short chain dehydrogenase; Provisional	95.48
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.48
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.48
PRK08303	305	short chain dehydrogenase; Provisional	95.47
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	95.47
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	95.47
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.45
PLN02476	278	O-methyltransferase	95.44
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.44
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.41
PRK08264	238	short chain dehydrogenase; Validated	95.41
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.41
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.41
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.37
PRK05650	270	short chain dehydrogenase; Provisional	95.37
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.37
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.37
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.37
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.37
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	95.36
PRK08328	231	hypothetical protein; Provisional	95.36
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.36
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.35
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.35
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.34
PRK08226	263	short chain dehydrogenase; Provisional	95.34
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.33
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.33
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.33
PRK08628	258	short chain dehydrogenase; Provisional	95.32
PRK09135	249	pteridine reductase; Provisional	95.32
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.32
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	95.31
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.31
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.28
PRK07856	252	short chain dehydrogenase; Provisional	95.28
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.28
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.28
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.25
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.25
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	95.25
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.24
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.24
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.22
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.2
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.2
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.2
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.19
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.19
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.18
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.17
PRK05599	246	hypothetical protein; Provisional	95.17
PLN02490	340	MPBQ/MSBQ methyltransferase	95.16
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.16
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.15
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.15
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.15
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	95.15

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=6.3e-58  Score=399.44  Aligned_cols=282  Identities=39%  Similarity=0.625  Sum_probs=257.8

Q ss_pred             cccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcc
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      +++++++.+....+++++.+++.|+|.++||+|+|+++|+|++|+|.++|.++...+|+++|||.+|+|+++|++|++|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            35667777766667799999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|.+.....+|++|++|++|.+++|++....       |...+|+|+||+++|++.++++|++++++.||++.|+..
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~-------gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGi  153 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT-------GYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGI  153 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCcccc-------ceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCee
Confidence            9999999777789999999999999999986544       445789999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      |.|++++.... +||++|+|.|.|++|.+|+|+|+.+|++|+++++++++.+.+ +++|++++++..+.+..+.+.+.+|
T Consensus       154 T~y~alk~~~~-~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a-~~lGAd~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         154 TTYRALKKANV-KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELA-KKLGADHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             eEeeehhhcCC-CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHH-HHhCCcEEEEcCCchhhHHhHhhCc
Confidence            99999988555 999999999999999999999999999999999999999998 7999999999877666666656699


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeeec
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +++++++ ..+++.+++.|+++|+++++|.+   ...+++...++.+++++.|-.
T Consensus       232 ~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~  285 (339)
T COG1064         232 AIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSL  285 (339)
T ss_pred             EEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEe
Confidence            9999999 77799999999999999999998   335588889999999999853

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.9e-55  Score=368.56  Aligned_cols=296  Identities=51%  Similarity=0.864  Sum_probs=273.5

Q ss_pred             CCcccccccceEEeeeCCCCccc--ceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEe
Q 022313            1 MTSETASKDCLGWAARDPSGVLS--PYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEV   78 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~v   78 (299)
                      |.+|..+.++.+|++...++.+.  .++++.|++.++||+|+|+++|||++|+|.+.|.++..++|.++|||.+|+|+++
T Consensus         1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEE
Confidence            67889999999999998888555  4999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc
Q 022313           79 GHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA  158 (299)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a  158 (299)
                      |++|++|++||+|.+.....+|++|++|.++.+++|++.-..+.+...||+.+.|+|++|+++++..+++||++++++.|
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~a  160 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASA  160 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhc
Confidence            99999999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCC-CHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSS-DLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~~  237 (299)
                      |++.|+..|+|.+|....- .||+++-|.|+|++|.+++|+|+++|.+|+++++++.+.+++.+.+|++.+++.. +++.
T Consensus       161 APlLCaGITvYspLk~~g~-~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~  239 (360)
T KOG0023|consen  161 APLLCAGITVYSPLKRSGL-GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDI  239 (360)
T ss_pred             cchhhcceEEeehhHHcCC-CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHH
Confidence            9999999999999988877 8999999999977999999999999999999999998888888899999999877 7777


Q ss_pred             HHHhcCCccEEEEcCC--CchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          238 MKALGKSLDFIIDTAS--GDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++.+-.|.+++++.  ....++.++.+++.+|+++++|.+ .+..+++..+..+++.|.|.
T Consensus       240 ~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS  302 (360)
T KOG0023|consen  240 MKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGS  302 (360)
T ss_pred             HHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEee
Confidence            7777655555555555  445599999999999999999999 79999999999999999874

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1e-48  Score=334.94  Aligned_cols=286  Identities=27%  Similarity=0.390  Sum_probs=253.1

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |++++....+..++|+++++.+++|+++||+||+.++|+||+|.+.+.|..+.. +|.+||||++|+|++||++|+.+++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            567777787889999999999999999999999999999999999999988855 9999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccc-cccccCCCCc-------------cCCcceeeEEeecceEEEcCCCC
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAIDADGTI-------------TKGGYSSYIVVHERYCYKIANDY  153 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~g~~-------------~~g~~~~~~~~~~~~~~~~p~~~  153 (299)
                      ||+|+ ..+..+||+|.+|+++.++.|...+-. .-|...||..             -.++|+||..+++.++++++++.
T Consensus        80 GDhVI-~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVI-LLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEE-EcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCC
Confidence            99994 566779999999999999999964222 2233333321             13599999999999999999999


Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      +++.++.+.|...|.+.++.+...+++|++|.|+|.|++|++++|-|+..|+ ++++++.++++++++ ++||+++++|.
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A-~~fGAT~~vn~  237 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELA-KKFGATHFVNP  237 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHH-HhcCCceeecc
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999 79999999999


Q ss_pred             CCHH----HHHHhcC-CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          233 SDLE----QMKALGK-SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       233 ~~~~----~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+..    .+.++++ ++|++|||+|+..+++.++.+..++|+.+.+|..   ...++++.+|... .+++|-
T Consensus       238 ~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs  309 (366)
T COG1062         238 KEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGS  309 (366)
T ss_pred             hhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEE
Confidence            8653    3445554 9999999999999999999999999999999988   5667888888866 666663

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.6e-49  Score=333.40  Aligned_cols=276  Identities=26%  Similarity=0.424  Sum_probs=244.2

Q ss_pred             ceEEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCC---CCCCccccccccEEEEEecCCCCCc
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGD---SKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      +.++.+ ..++++++.+.+.|++ .|+||+|+++++|||+||+|++.+....   .+.|.++|||.+|+|+++|+.|+++
T Consensus         5 ~~A~vl-~g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~L   83 (354)
T KOG0024|consen    5 NLALVL-RGKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHL   83 (354)
T ss_pred             cceeEE-EccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccccc
Confidence            445555 4778899999999987 9999999999999999999999765432   3579999999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||||++.|.. +|+.|+.|++|+|+.|++..|.-.+      ..+|++++|+..++++|+++|+++|++++|.+. ++
T Consensus        84 kVGDrVaiEpg~-~c~~cd~CK~GrYNlCp~m~f~atp------p~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PL  155 (354)
T KOG0024|consen   84 KVGDRVAIEPGL-PCRDCDFCKEGRYNLCPHMVFCATP------PVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PL  155 (354)
T ss_pred             ccCCeEEecCCC-ccccchhhhCcccccCCccccccCC------CcCCceEEEEEechHheeeCCCCCchhhccccc-ch
Confidence            999999998886 9999999999999999998776332      357999999999999999999999999988665 69


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHh
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKAL  241 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~  241 (299)
                      +.+|||.++... ++|++|||+|+|++|+++...|+.+|+ +|++++..++|++.+ ++||++.+.+.....   .+.+.
T Consensus       156 sV~~HAcr~~~v-k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~A-k~~Ga~~~~~~~~~~~~~~~~~~  233 (354)
T KOG0024|consen  156 SVGVHACRRAGV-KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELA-KKFGATVTDPSSHKSSPQELAEL  233 (354)
T ss_pred             hhhhhhhhhcCc-ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHH-HHhCCeEEeeccccccHHHHHHH
Confidence            999999987766 999999999999999999999999999 999999999999999 579999998766532   22222


Q ss_pred             -----c-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          242 -----G-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       242 -----~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                           + ..+|++|||+|...+++.++.+++.+|+++++|+- ...+||+.....|+++++|
T Consensus       234 v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g  295 (354)
T KOG0024|consen  234 VEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRG  295 (354)
T ss_pred             HHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeee
Confidence                 2 45999999999999999999999999999999999 8999999999999999987

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=5.9e-47  Score=343.59  Aligned_cols=294  Identities=50%  Similarity=0.898  Sum_probs=253.9

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      +.+||+.++...+.++.++..+++.|++.++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~   87 (360)
T PLN02586          8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK   87 (360)
T ss_pred             hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence            67899999999888888999999999999999999999999999999998876554467899999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchh
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCA  164 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  164 (299)
                      |++||+|.+.+...+|+.|.+|+.+.++.|++..+.+.....+|....|+|+||+.+|++.++++|+++++++++++++.
T Consensus        88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~  167 (360)
T PLN02586         88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCA  167 (360)
T ss_pred             cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcc
Confidence            99999997666556899999999999999998654322111123334699999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCC
Q 022313          165 GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       165 ~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  244 (299)
                      +.|+|+++.....++++++|+|.|+|++|++++|+|+..|++|++++.++++..++.+++|++++++..+.+.+.+..++
T Consensus       168 ~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~  247 (360)
T PLN02586        168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGT  247 (360)
T ss_pred             hHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCC
Confidence            99999998776666899999999999999999999999999999888887776666678999999987765555555568


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +|++||++|....+..++++++++|+++.+|.. ....+++..++.+++.+.|+.
T Consensus       248 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~  302 (360)
T PLN02586        248 MDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD  302 (360)
T ss_pred             CCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence            999999999876688999999999999999987 566788888888998888763

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.5e-46  Score=315.56  Aligned_cols=285  Identities=26%  Similarity=0.411  Sum_probs=255.1

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      .+..++++.+.....++|.++|+..++|+.+||+||+.++++||+|.+.+.|..+...+|.+||||++|+|+++|+.|++
T Consensus         3 gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~   82 (375)
T KOG0022|consen    3 GKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTT   82 (375)
T ss_pred             CCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccc
Confidence            46778888888888899999999999999999999999999999999999998776788999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCcccccccccc--ccccCCCCcc-------------CCcceeeEEeecceEEEc
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF--NAIDADGTIT-------------KGGYSSYIVVHERYCYKI  149 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~--~~~~~~g~~~-------------~g~~~~~~~~~~~~~~~~  149 (299)
                      +++||+| +..+...|++|.+|+++.+++|...+...  .++..||..+             ..+|+||.+++...++++
T Consensus        83 vk~GD~V-iplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kI  161 (375)
T KOG0022|consen   83 VKPGDHV-IPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKI  161 (375)
T ss_pred             cCCCCEE-eeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEec
Confidence            9999999 45677899999999999999999975543  3344455332             359999999999999999


Q ss_pred             CCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCE
Q 022313          150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       150 p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      +++.+++.++.+.|.+.|.|.|..+...+++|+++.|+|.|++|+++++-|+..|| ++|.++.++++.+.+ ++||+++
T Consensus       162 d~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~a-k~fGaTe  240 (375)
T KOG0022|consen  162 DPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKA-KEFGATE  240 (375)
T ss_pred             CCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHH-HhcCcce
Confidence            99999999999999999999999889889999999999999999999999999999 999999999999999 7999999


Q ss_pred             EEeCCCH-----HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC---CceeeChhhhhcCC
Q 022313          229 FVVSSDL-----EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP---SKVKFSPASLNIGN  291 (299)
Q Consensus       229 v~~~~~~-----~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~---~~~~~~~~~l~~~~  291 (299)
                      ++|+.|.     +.+.+++ +++|+.|||+|+..++++++.+...+ |+-+.+|..   ...++.+++|+..+
T Consensus       241 ~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR  313 (375)
T KOG0022|consen  241 FINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGR  313 (375)
T ss_pred             ecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhcccc
Confidence            9999853     3344554 79999999999999999999999988 999999988   67778888887544

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=6.6e-45  Score=331.42  Aligned_cols=291  Identities=49%  Similarity=0.873  Sum_probs=245.3

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      .++.++...+.++.++..+++.|++.++||+|||.++++|++|++.+.|.+....+|.++|||++|+|+++|+++++|++
T Consensus         5 ~~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~v   84 (375)
T PLN02178          5 NKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKE   84 (375)
T ss_pred             ceeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCC
Confidence            34566667667778888999999999999999999999999999999886643456889999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|.+.+...+|+.|.+|+++.++.|++..+........|....|+|+||+.+|++.++++|+++++++++++.+...|
T Consensus        85 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~t  164 (375)
T PLN02178         85 GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGIT  164 (375)
T ss_pred             CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchH
Confidence            99998666555799999999999999998654321111112234699999999999999999999999999999999999


Q ss_pred             HHHHhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          168 VYTPMMRHKM-NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       168 a~~al~~~~~-~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      +|+++..... .+++++|+|.|+|++|++++|+|+..|++|++++.+++++.++++++|++++++..+.+.+.+..+++|
T Consensus       165 a~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D  244 (375)
T PLN02178        165 VYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMD  244 (375)
T ss_pred             HHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCc
Confidence            9999876543 268999999999999999999999999999999887666444447899999998766555555556899


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++||++|....+..++++++++|+++.+|.. ....+++..++.|+++++|+.
T Consensus       245 ~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~  297 (375)
T PLN02178        245 FIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQ  297 (375)
T ss_pred             EEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeC
Confidence            9999999886689999999999999999987 566788888999999999864

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.6e-44  Score=327.45  Aligned_cols=298  Identities=46%  Similarity=0.816  Sum_probs=256.2

Q ss_pred             CCcccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecC
Q 022313            1 MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH   80 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~   80 (299)
                      |.+.+...+++++....+.+.++.++++.|++.++||+|||.++++|++|++.+.|.+.....|.++|||++|+|+++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~   80 (357)
T PLN02514          1 MGSLEAEKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGS   80 (357)
T ss_pred             CCccCCCceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECC
Confidence            56667677788888888888899999999999999999999999999999998887665445688999999999999999


Q ss_pred             CCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccc
Q 022313           81 NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAP  160 (299)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~  160 (299)
                      ++++|++||+|.+.+....|+.|.+|+++.++.|.+..+.+.+....|....|+|+||+.+|.+.++++|++++++++++
T Consensus        81 ~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  160 (357)
T PLN02514         81 DVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAP  160 (357)
T ss_pred             CcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhh
Confidence            99999999999866555579999999999999998764322211112333469999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHH
Q 022313          161 LLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA  240 (299)
Q Consensus       161 ~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  240 (299)
                      +++++.|+|+++......+++++|+|+|+|++|++++|+|+..|++++++++++++.+.+++++|++++++..+.+.+.+
T Consensus       161 l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~  240 (357)
T PLN02514        161 LLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE  240 (357)
T ss_pred             hhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHH
Confidence            99999999999977766689999999999999999999999999999999988888877767899988887665555555


Q ss_pred             hcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       241 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ...++|++||++|....+..++++++++|+++.+|.. ...++++..++.+++++.|+.
T Consensus       241 ~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  299 (357)
T PLN02514        241 AADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSF  299 (357)
T ss_pred             hcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEe
Confidence            5568999999999766689999999999999999987 556788888999999999863

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=4.3e-43  Score=319.77  Aligned_cols=277  Identities=27%  Similarity=0.406  Sum_probs=235.2

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      ++.+++++++.|++.++||+|||+++++|++|++.+.|.++ ...|.++|||++|+|+++|+++.++++||+|.+.+. .
T Consensus        18 ~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~-~   95 (371)
T cd08281          18 SRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFV-P   95 (371)
T ss_pred             CCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCCCCcCCCCCEEEEccC-C
Confidence            47789999999999999999999999999999999988654 356889999999999999999999999999987544 4


Q ss_pred             CCCCCccccCCCCcccccccccc-ccccC--------CC-----CccCCcceeeEEeecceEEEcCCCCCcccccccchh
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTF-NAIDA--------DG-----TITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCA  164 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~-~~~~~--------~g-----~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  164 (299)
                      .|+.|.+|+.+.+++|.+..... .|...        ++     ....|+|+||+.++++.++++|+++++++|+.+.++
T Consensus        96 ~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~  175 (371)
T cd08281          96 SCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCA  175 (371)
T ss_pred             CCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEECCCCCChHHhhhhcch
Confidence            89999999999999998753221 11110        00     011379999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHH
Q 022313          165 GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKA  240 (299)
Q Consensus       165 ~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~  240 (299)
                      +.|+|+++.....++++++|+|.|+|++|++++|+|+..|+ +|+++++++++++.+ +++|++++++..+.+.   +.+
T Consensus       176 ~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~Ga~~~i~~~~~~~~~~i~~  254 (371)
T cd08281         176 VLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA-RELGATATVNAGDPNAVEQVRE  254 (371)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHcCCceEeCCCchhHHHHHHH
Confidence            99999998666667999999999999999999999999999 699999998888877 7899999998776443   333


Q ss_pred             hc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C--ceeeChhhhhcCCeeeeeec
Q 022313          241 LG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S--KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       241 ~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +. +++|++||++|....+..++++++++|+++.+|.. .  ..+++...++.|+++++|+.
T Consensus       255 ~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~  316 (371)
T cd08281         255 LTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSY  316 (371)
T ss_pred             HhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEe
Confidence            32 47999999999877799999999999999999987 2  45788888999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=4.9e-43  Score=316.22  Aligned_cols=280  Identities=20%  Similarity=0.292  Sum_probs=231.2

Q ss_pred             cceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhc-cCCC--CCCCCccccccccEEEEEecCCCCCc
Q 022313            9 DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTR-NKHG--DSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~-g~~~--~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      ++++..+. .++.+++++.+.| +.++||||||+++++|++|++.+. |..+  ..++|.++|||++|+|+++  ++++|
T Consensus         4 ~~~~~~~~-~~~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~   79 (343)
T PRK09880          4 KTQSCVVA-GKKDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGL   79 (343)
T ss_pred             cceEEEEe-cCCceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccC
Confidence            44555553 6777999999987 589999999999999999998875 4332  2357899999999999999  68889


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||+|.+.+. .+|++|.+|+.+.+++|++..+.  |.........|+|+||+.++++.++++|+++++++++ +..++
T Consensus        80 ~vGdrV~~~~~-~~cg~c~~c~~g~~~~c~~~~~~--g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~  155 (343)
T PRK09880         80 KEGQTVAINPS-KPCGHCKYCLSHNENQCTTMRFF--GSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPL  155 (343)
T ss_pred             CCCCEEEECCC-CCCcCChhhcCCChhhCCCccee--ecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHH
Confidence            99999988765 58999999999999999986542  2110001246999999999999999999999987655 55678


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH--Hhc
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK--ALG  242 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~--~~~  242 (299)
                      .++|+++..... .++++|+|.|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++++.+..+  ...
T Consensus       156 ~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~~~  233 (343)
T PRK09880        156 AVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REMGADKLVNPQNDDLDHYKAEK  233 (343)
T ss_pred             HHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHcCCcEEecCCcccHHHHhccC
Confidence            899999987766 689999999999999999999999999 689999999888887 689999999876533211  123


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +++|++||++|++..++.++++++++|+++.+|.. ...++++..++.|+++++|+.
T Consensus       234 g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~  290 (343)
T PRK09880        234 GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSF  290 (343)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEe
Confidence            46999999999876789999999999999999987 567788888999999998863

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=7e-43  Score=319.38  Aligned_cols=290  Identities=22%  Similarity=0.323  Sum_probs=239.6

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      .++++|+++.+..+.+.+.+++++.|++.++||+|||+++++|++|++.+.|... ...+|.++|||++|+|+++|++++
T Consensus         6 ~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~   85 (381)
T PLN02740          6 GKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVE   85 (381)
T ss_pred             ccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCCC
Confidence            4567788888766555688899999999999999999999999999999988653 235688999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccc-------cccCC----------CCccCCcceeeEEeecceE
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFN-------AIDAD----------GTITKGGYSSYIVVHERYC  146 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~-------~~~~~----------g~~~~g~~~~~~~~~~~~~  146 (299)
                      +|++||+|++.+. .+|+.|.+|+.+.++.|.+..+...       |....          +....|+|+||+.+|++.+
T Consensus        86 ~~~vGdrV~~~~~-~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~  164 (381)
T PLN02740         86 DLKAGDHVIPIFN-GECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACV  164 (381)
T ss_pred             cCCCCCEEEecCC-CCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHe
Confidence            9999999987665 4899999999999999998643210       00000          0112599999999999999


Q ss_pred             EEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC
Q 022313          147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG  225 (299)
Q Consensus       147 ~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g  225 (299)
                      +++|+++++++++.+.+++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|
T Consensus       165 ~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~G  243 (381)
T PLN02740        165 VKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEMG  243 (381)
T ss_pred             EECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHcC
Confidence            99999999999999999999999987666667999999999999999999999999999 699999999998888 6899


Q ss_pred             CCEEEeCCCH-----HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-Cc--eeeChhhhhcCCeeee
Q 022313          226 ADKFVVSSDL-----EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-SK--VKFSPASLNIGNAPLF  295 (299)
Q Consensus       226 ~~~v~~~~~~-----~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~~--~~~~~~~l~~~~~~~~  295 (299)
                      ++++++..+.     +.+.++. +++|++||++|+...+..++++++++ |+++.+|.. ..  .++++..++ +++++.
T Consensus       244 a~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~-~~~~i~  322 (381)
T PLN02740        244 ITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELF-DGRSIT  322 (381)
T ss_pred             CcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHh-cCCeEE
Confidence            9999987642     2233333 47999999999877799999999996 999999987 33  344444444 788888


Q ss_pred             ee
Q 022313          296 RF  297 (299)
Q Consensus       296 g~  297 (299)
                      |+
T Consensus       323 g~  324 (381)
T PLN02740        323 GS  324 (381)
T ss_pred             EE
Confidence            75

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=9.8e-43  Score=313.77  Aligned_cols=280  Identities=26%  Similarity=0.340  Sum_probs=225.6

Q ss_pred             EeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCc-cccccccEEEEEecCCCCCcccCCEE
Q 022313           13 WAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPL-VPGHEIVGIVKEVGHNVSRFKVGDHV   91 (299)
Q Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~-~lG~e~~G~V~~vG~~v~~~~~Gd~V   91 (299)
                      +..+.+.+..++.+.+.|.+.++||+|||.+++||++|++.+++..+....+. ++|||++|+|+++| .++.+++||||
T Consensus         4 ~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~GdrV   82 (350)
T COG1063           4 AVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVGDRV   82 (350)
T ss_pred             eEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCCCEE
Confidence            33434444445667766778999999999999999999999999766555565 89999999999999 77889999999


Q ss_pred             EEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEE-EcCCCCCcccccccchhhHHHHH
Q 022313           92 GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY-KIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        92 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~-~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      ++.+. .+|+.|.+|+.+.+++|.+.++.  |....+....|+|+||+.+|.+.++ ++|+++ ..+++++..++.++|+
T Consensus        83 vv~~~-~~Cg~C~~C~~G~~~~C~~~~~~--g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~  158 (350)
T COG1063          83 VVEPN-IPCGHCRYCRAGEYNLCENPGFY--GYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYH  158 (350)
T ss_pred             EECCC-cCCCCChhHhCcCcccCCCcccc--ccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhh
Confidence            88766 49999999999999999955422  2111122367999999999976544 558888 6777788889999987


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCH---HHHHHhc--CC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDL---EQMKALG--KS  244 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~--~~  244 (299)
                      +.......+++.+|+|+|+|++|++++++++..|+ +|++++++++|++.+++..+++.+++....   ..+.+.+  .+
T Consensus       159 ~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         159 GHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             hhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCC
Confidence            74444433666699999999999999999999998 888889999999999544778777766542   2233444  36


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cce-eeChhhhhcCCeeeeee
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKV-KFSPASLNIGNAPLFRF  297 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~-~~~~~~l~~~~~~~~g~  297 (299)
                      +|++|||+|...++..++++++++|+++.+|.. ... .++...++.|+++++|-
T Consensus       239 ~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs  293 (350)
T COG1063         239 ADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGS  293 (350)
T ss_pred             CCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEec
Confidence            999999999888899999999999999999999 444 78899999999999984

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.8e-42  Score=314.32  Aligned_cols=285  Identities=25%  Similarity=0.383  Sum_probs=238.3

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      |+++.+.+..+++++++++.|++.++||+|||.++++|++|++.+.|... ..+|.++|||++|+|+++|+++.+|++||
T Consensus         2 mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   80 (358)
T TIGR03451         2 VRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPGD   80 (358)
T ss_pred             cEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCCC
Confidence            34555545555689999999999999999999999999999998888654 35688999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCcccccccccccccc-CCCC-----ccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID-ADGT-----ITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~-~~g~-----~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      +|.+.+. .+|+.|.+|..+.+++|........... .+|.     ...|+|+||+.+|++.++++|+++++++++.+++
T Consensus        81 rV~~~~~-~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~  159 (358)
T TIGR03451        81 YVVLNWR-AVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGC  159 (358)
T ss_pred             EEEEccC-CCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhhcc
Confidence            9987665 4899999999999999986422111000 0111     1359999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HH
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MK  239 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~  239 (299)
                      .+.++|+++.....++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++.+.+.   +.
T Consensus       160 ~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~i~  238 (358)
T TIGR03451       160 GVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-REFGATHTVNSSGTDPVEAIR  238 (358)
T ss_pred             cchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceEEcCCCcCHHHHHH
Confidence            999999887766667999999999999999999999999999 599999998888888 7899999998765433   33


Q ss_pred             Hhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C--ceeeChhhhhcCCeeeeee
Q 022313          240 ALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S--KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       240 ~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~  297 (299)
                      +..  .++|++||++|+...++.++++++++|+++.+|.. .  ..++++..++.|++++.++
T Consensus       239 ~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~  301 (358)
T TIGR03451       239 ALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSS  301 (358)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEe
Confidence            333  47999999999876789999999999999999987 3  3567777888999999875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=6.4e-42  Score=311.88  Aligned_cols=286  Identities=24%  Similarity=0.361  Sum_probs=237.6

Q ss_pred             cceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccC
Q 022313            9 DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      +++++.+...++.+++++++.|+++++||+|||.++++|++|++.+.|..+...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (369)
T cd08301           2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKPG   81 (369)
T ss_pred             ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccccC
Confidence            45666766667779999999999999999999999999999999988876555678999999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccc-cccccC---------CC-----CccCCcceeeEEeecceEEEcCCCC
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAIDA---------DG-----TITKGGYSSYIVVHERYCYKIANDY  153 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~---------~g-----~~~~g~~~~~~~~~~~~~~~~p~~~  153 (299)
                      |+|++.+. .+|+.|.+|+.+.+++|...... ..|...         .|     ....|+|+||+.+++..++++|+++
T Consensus        82 drV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  160 (369)
T cd08301          82 DHVLPVFT-GECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEA  160 (369)
T ss_pred             CEEEEccC-CCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCC
Confidence            99987544 58999999999999999985432 011100         00     0134899999999999999999999


Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      ++++++.+++.+.|+|+++.....++++++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|++.+++.
T Consensus       161 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~Ga~~~i~~  239 (369)
T cd08301         161 PLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKFGVTEFVNP  239 (369)
T ss_pred             CHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceEEcc
Confidence            9999999999999999987766667999999999999999999999999999 899999999998888 78999999877


Q ss_pred             CCH-----HHHHHh-cCCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-C--ceeeChhhhhcCCeeeeee
Q 022313          233 SDL-----EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-S--KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       233 ~~~-----~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+.     +.+.++ .+++|++||++|+...+..++++++++ |+++.+|.. .  ..++++..++ +++++.|+
T Consensus       240 ~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~  313 (369)
T cd08301         240 KDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGT  313 (369)
T ss_pred             cccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHh-cCCeEEEE
Confidence            642     123333 357999999999877788999999996 999999987 3  3345544444 78999886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=5.3e-42  Score=312.17  Aligned_cols=284  Identities=24%  Similarity=0.339  Sum_probs=232.5

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      ++++.+...++.+++++++.|++.++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            44556656667799999999999999999999999999999999988765456789999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccc-cccccCC--------C-----CccCCcceeeEEeecceEEEcCCCCCc
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAIDAD--------G-----TITKGGYSSYIVVHERYCYKIANDYPL  155 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~--------g-----~~~~g~~~~~~~~~~~~~~~~p~~~~~  155 (299)
                      +|.+.+. .+|+.|.+|+.+.++.|.+.... ..|...+        |     ....|+|+||+.+|.+.++++|+++++
T Consensus        82 rV~~~~~-~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYT-AECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCC-CCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            9987654 48999999999999999874311 0111100        1     012479999999999999999999999


Q ss_pred             ccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCC
Q 022313          156 ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSD  234 (299)
Q Consensus       156 ~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~  234 (299)
                      ++++.+++++.|+|+++.....++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|++++++..+
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~Ga~~~i~~~~  239 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKLGATDCVNPND  239 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCeEEcccc
Confidence            99999999999999998766667999999999999999999999999999 799999999988888 7899999988663


Q ss_pred             --H---HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-C--ceeeChhhhhcCCeeeee
Q 022313          235 --L---EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-S--KVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       235 --~---~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g  296 (299)
                        .   +.+.++. +++|++||++|+...+..++++++++ |+++.+|.. .  ..+++...++.+ ..++|
T Consensus       240 ~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~g  310 (368)
T TIGR02818       240 YDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTG-RVWRG  310 (368)
T ss_pred             cchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhcc-ceEEE
Confidence              1   2233333 48999999999877789999999886 999999986 2  344555555533 34554

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=3.2e-42  Score=309.01  Aligned_cols=265  Identities=29%  Similarity=0.469  Sum_probs=232.0

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      ..++++++|.|++.++||+|||+++++|++|++.+.|.++....|.++|||++|+|+++|+++++|++||+|.+.+...+
T Consensus        13 ~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   92 (329)
T TIGR02822        13 GPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRT   92 (329)
T ss_pred             CCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCc
Confidence            46889999999999999999999999999999999887654445789999999999999999999999999988776668


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                      |+.|.+|+.+.++.|++..+.       |....|+|+||+.+|++.++++|+++++++++++++.+.|+|+++.. ..++
T Consensus        93 c~~c~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~-~~~~  164 (329)
T TIGR02822        93 CGVCRYCRRGAENLCPASRYT-------GWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLP  164 (329)
T ss_pred             CCCChHHhCcCcccCCCcccC-------CcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHh-cCCC
Confidence            999999999999999986432       22346999999999999999999999999999999999999999975 4569


Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD  259 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  259 (299)
                      ++++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|++++++..+.     ..+++|+++++.+...++.
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a-~~~Ga~~vi~~~~~-----~~~~~d~~i~~~~~~~~~~  238 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLA-LALGAASAGGAYDT-----PPEPLDAAILFAPAGGLVP  238 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-HHhCCceecccccc-----CcccceEEEECCCcHHHHH
Confidence            99999999999999999999999999999999999888777 79999999875431     1257899999888777799


Q ss_pred             HHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          260 AYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       260 ~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      .++++++++|+++.+|..  ...++++..++.|++++.|..
T Consensus       239 ~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~  279 (329)
T TIGR02822       239 PALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVT  279 (329)
T ss_pred             HHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEee
Confidence            999999999999999986  334677888888999998753

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=5.1e-42  Score=309.05  Aligned_cols=278  Identities=26%  Similarity=0.377  Sum_probs=234.9

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+. .++.+++++++.|++.++||+||+.++++|++|++.+.+.+.. ...|.++|||++|+|+++|++++++++||
T Consensus         2 ka~~~~-~~~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   80 (339)
T cd08239           2 RGAVFP-GDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGD   80 (339)
T ss_pred             eEEEEe-cCCceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCCC
Confidence            444443 5678999999999999999999999999999999988765431 23578999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|.+.+.. .|+.|.+|+.+.++.|.+..+. .     |....|+|+||+.+|++.++++|+++++++++.+++++.|+|
T Consensus        81 ~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~-~-----g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~  153 (339)
T cd08239          81 RVMVYHYV-GCGACRNCRRGWMQLCTSKRAA-Y-----GWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAY  153 (339)
T ss_pred             EEEECCCC-CCCCChhhhCcCcccCcCcccc-c-----ccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHH
Confidence            99876654 8999999999999999876431 1     234569999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH--HHHHhc--CC
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE--QMKALG--KS  244 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~--~~  244 (299)
                      +++.... ++++++|||+|+|++|++++|+|+..|++ |+++++++++.+.+ +++|+++++++++.+  .+.+..  .+
T Consensus       154 ~~l~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~ga~~~i~~~~~~~~~~~~~~~~~~  231 (339)
T cd08239         154 HALRRVG-VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA-KALGADFVINSGQDDVQEIRELTSGAG  231 (339)
T ss_pred             HHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEEcCCcchHHHHHHHhCCCC
Confidence            9997665 48999999999999999999999999997 99999998888887 789999999876543  223332  47


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeCh-hhhhcCCeeeeeec
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSP-ASLNIGNAPLFRFK  298 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~l~~~~~~~~g~~  298 (299)
                      +|++||++|+......++++++++|+++.+|.....+++. ..++.|++++.|+.
T Consensus       232 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~  286 (339)
T cd08239         232 ADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSW  286 (339)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEe
Confidence            9999999999876688999999999999999873334443 46778999998864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=9.1e-42  Score=311.48  Aligned_cols=286  Identities=21%  Similarity=0.305  Sum_probs=235.2

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      .+|+++.+.+.++.+++++++.|+++++||+|||+++++|++|++.+.+..   .+|.++|||++|+|+++|+++++|++
T Consensus        11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~   87 (378)
T PLN02827         11 ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEK   87 (378)
T ss_pred             ceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCC
Confidence            356677776666678999999999999999999999999999999887642   35789999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCcccccccccccccc---------CCC-----CccCCcceeeEEeecceEEEcCCCC
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID---------ADG-----TITKGGYSSYIVVHERYCYKIANDY  153 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~---------~~g-----~~~~g~~~~~~~~~~~~~~~~p~~~  153 (299)
                      ||+|.+.+. .+|+.|.+|+++.+++|.+......+..         ..|     ....|+|+||+.+|++.++++|+++
T Consensus        88 GdrV~~~~~-~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l  166 (378)
T PLN02827         88 GDHVLTVFT-GECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLA  166 (378)
T ss_pred             CCEEEEecC-CCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCC
Confidence            999987654 4899999999999999987532111110         001     0124899999999999999999999


Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      ++++++.+.+++.++|+++.....++++++|||+|+|++|++++|+|+..|+ .|+++++++++.+.+ +++|++++++.
T Consensus       167 ~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~lGa~~~i~~  245 (378)
T PLN02827        167 PLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTFGVTDFINP  245 (378)
T ss_pred             CHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcCCcEEEcc
Confidence            9999999999999999877665667999999999999999999999999999 577777788888877 78999999887


Q ss_pred             CCH-----HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-CceeeCh-hhhhcCCeeeeeec
Q 022313          233 SDL-----EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-SKVKFSP-ASLNIGNAPLFRFK  298 (299)
Q Consensus       233 ~~~-----~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~~~~~~~-~~l~~~~~~~~g~~  298 (299)
                      ++.     +.+.++. +++|++||++|....+..+++.++++ |+++.+|.. ....+++ ..++.|+++++|+.
T Consensus       246 ~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  320 (378)
T PLN02827        246 NDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSL  320 (378)
T ss_pred             cccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeee
Confidence            642     2233333 48999999999876689999999998 999999988 4445544 46788999999863

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1e-41  Score=310.09  Aligned_cols=286  Identities=26%  Similarity=0.415  Sum_probs=240.0

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |+++++.+...++.+++++++.|++.++||+|||+++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++++++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            4567777766667789999999999999999999999999999999888664 456889999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCC-------------ccCCcceeeEEeecceEEEcCCCCC
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT-------------ITKGGYSSYIVVHERYCYKIANDYP  154 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~g~~~~~~~~~~~~~~~~p~~~~  154 (299)
                      ||+|...+. .+|++|.+|..+.+.+|.+..+...|...++.             ...|+|+||+.++++.++++|++++
T Consensus        80 GdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~  158 (365)
T cd08277          80 GDKVIPLFI-GQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAP  158 (365)
T ss_pred             CCEEEECCC-CCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCC
Confidence            999976544 59999999999999999986544333332210             1258999999999999999999999


Q ss_pred             cccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC
Q 022313          155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       155 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                      +++++.+++++.|+|+++.....++++++|+|+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|++++++..
T Consensus       159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~ga~~~i~~~  237 (365)
T cd08277         159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEFGATDFINPK  237 (365)
T ss_pred             HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCCcEeccc
Confidence            999999999999999987666667999999999999999999999999999 799999998888888 689999998766


Q ss_pred             CH-----HHHHHh-cCCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          234 DL-----EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       234 ~~-----~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.     +.+.+. .+++|++||++|+...+..++++++++ |+++.+|..  ...++++..++. ++++.|+
T Consensus       238 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~  309 (365)
T cd08277         238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGS  309 (365)
T ss_pred             cccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEee
Confidence            42     223333 358999999999877689999999885 999999987  345667766664 7888775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=3.5e-42  Score=306.54  Aligned_cols=256  Identities=28%  Similarity=0.397  Sum_probs=221.8

Q ss_pred             cceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccC-CCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            9 DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNK-HGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~-~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      ++..+.-...+..+++.+.+.|.|.++||||||+++++|+.|.+.+.|. .+..+.|.++|.|++|+|+++|++++.|++
T Consensus         2 ka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~   81 (326)
T COG0604           2 KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKV   81 (326)
T ss_pred             eEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCC
Confidence            4444444455666999999999999999999999999999999999986 334568999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|.....                               . ...|+|+||..+|++.++++|+++|+++||+++++++|
T Consensus        82 GdrV~~~~~-------------------------------~-~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~T  129 (326)
T COG0604          82 GDRVAALGG-------------------------------V-GRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLT  129 (326)
T ss_pred             CCEEEEccC-------------------------------C-CCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHH
Confidence            999974210                               0 04699999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc-
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG-  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~-  242 (299)
                      ||+++.....+++|++|||+|+ |++|.+++|+|+.+|+.+++++.++++.+.+ +++|+++++++.+.+.   +++++ 
T Consensus       130 A~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~-~~lGAd~vi~y~~~~~~~~v~~~t~  208 (326)
T COG0604         130 AWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELL-KELGADHVINYREEDFVEQVRELTG  208 (326)
T ss_pred             HHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHH-HhcCCCEEEcCCcccHHHHHHHHcC
Confidence            9999998888899999999986 9999999999999998888888888888855 8999999999887543   44444 


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCC---ceeeChhhhhcCCeeeeeec
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS---KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~~~~~~l~~~~~~~~g~~  298 (299)
                       +++|+|+|++|+.. +..++++|+++|+++.+|...   ..++++..++.++++++|+.
T Consensus       209 g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~  267 (326)
T COG0604         209 GKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVT  267 (326)
T ss_pred             CCCceEEEECCCHHH-HHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEec
Confidence             47999999999987 888999999999999999973   55677788888999999875

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=4.1e-41  Score=306.45  Aligned_cols=286  Identities=25%  Similarity=0.373  Sum_probs=232.8

Q ss_pred             cceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccC
Q 022313            9 DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      +++++.+...++++++++++.|++.++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG   81 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG   81 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence            34556655666789999999999999999999999999999999988876545678999999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccc-cccccCCC-------------CccCCcceeeEEeecceEEEcCCCCC
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAIDADG-------------TITKGGYSSYIVVHERYCYKIANDYP  154 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~g-------------~~~~g~~~~~~~~~~~~~~~~p~~~~  154 (299)
                      |+|...+. .+|++|.+|++++++.|.+.... ..|...+|             ....|+|+||+.++++.++++|++++
T Consensus        82 drV~~~~~-~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~  160 (368)
T cd08300          82 DHVIPLYT-PECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP  160 (368)
T ss_pred             CEEEEcCC-CCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence            99987544 59999999999999999875321 01111111             01247999999999999999999999


Q ss_pred             cccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC
Q 022313          155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       155 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                      +++++.+++++.|+|+++.....++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++.
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~lGa~~~i~~~  239 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKFGATDCVNPK  239 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCCEEEccc
Confidence            999999999999999988666667999999999999999999999999999 799999999998888 789999999876


Q ss_pred             CH-----HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-C--ceeeChhhhhcCCeeeeee
Q 022313          234 DL-----EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-S--KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       234 ~~-----~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.     +.+.++. +++|+|||++|+...+..++++++++ |+++.+|.. .  ...+++..+. ++.++.|+
T Consensus       240 ~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~  312 (368)
T cd08300         240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGT  312 (368)
T ss_pred             ccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEE
Confidence            53     1233332 48999999999876689999999886 999999987 2  2344444444 33455553

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.1e-40  Score=302.16  Aligned_cols=268  Identities=24%  Similarity=0.268  Sum_probs=214.4

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC---CCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD---SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      .+++++++.|++.++||||||+++++|++|++.+.|.++.   ...|.++|||++|+|+++|++ ++|++||+|++.+. 
T Consensus        12 ~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~-   89 (355)
T cd08230          12 GVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTVR-   89 (355)
T ss_pred             CCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEeccc-
Confidence            3899999999999999999999999999999999886532   235789999999999999999 89999999987654 


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhc--
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRH--  175 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~--  175 (299)
                      ..|+.|.+|+.++++.|.+..+...|..    ...|+|+||+.++++.++++|++++  +++.+.+++.++++++...  
T Consensus        90 ~~cg~C~~c~~g~~~~c~~~~~~~~g~~----~~~G~~aey~~~~~~~~~~~P~~~~--~~a~~~~p~~~~~~a~~~~~~  163 (355)
T cd08230          90 RPPGKCLNCRIGRPDFCETGEYTERGIK----GLHGFMREYFVDDPEYLVKVPPSLA--DVGVLLEPLSVVEKAIEQAEA  163 (355)
T ss_pred             cCCCcChhhhCcCcccCCCcceeccCcC----CCCccceeEEEeccccEEECCCCCC--cceeecchHHHHHHHHHHHhh
Confidence            4799999999999999987543222211    2469999999999999999999998  3444555665555544322  


Q ss_pred             ----cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeC---CchHHHHHHHhcCCCEEEeCCCHHHH-HHhcCCccE
Q 022313          176 ----KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLST---STSKKEEALSLLGADKFVVSSDLEQM-KALGKSLDF  247 (299)
Q Consensus       176 ----~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~---~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~d~  247 (299)
                          ...+++++|+|+|+|++|++++|+|+..|++|+++++   ++++.+.+ +++|++.+ +..+.+.. .....++|+
T Consensus       164 ~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~-~~~Ga~~v-~~~~~~~~~~~~~~~~d~  241 (355)
T cd08230         164 VQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV-EELGATYV-NSSKTPVAEVKLVGEFDL  241 (355)
T ss_pred             hhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEe-cCCccchhhhhhcCCCCE
Confidence                1236899999999999999999999999999999987   46666666 78999874 44432211 122468999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC-C--ceeeC----hhhhhcCCeeeeeec
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S--KVKFS----PASLNIGNAPLFRFK  298 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~--~~~~~----~~~l~~~~~~~~g~~  298 (299)
                      |||++|....+..+++.++++|+++.+|.. .  ..+++    ...++.|++++.|+.
T Consensus       242 vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~  299 (355)
T cd08230         242 IIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSV  299 (355)
T ss_pred             EEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEec
Confidence            999999876689999999999999999987 3  44555    356788999999863

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=2e-40  Score=303.57  Aligned_cols=260  Identities=22%  Similarity=0.283  Sum_probs=207.8

Q ss_pred             EEeeeCCCCcccceeeecCCCC-------CCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313           12 GWAARDPSGVLSPYSFNRRAVG-------SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~-------~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      ++.+ ..++++++++++.|+++       ++||||||++++||++|++++.|... ...|.++|||++|+|+++|+++.+
T Consensus         5 a~v~-~~~~~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~V~~   82 (393)
T TIGR02819         5 GVVY-LGPGKVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRDVEF   82 (393)
T ss_pred             EEEE-ecCCceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCcccc
Confidence            4444 35667999999999874       68999999999999999999987653 356899999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccc----cccccCCCCccCCcceeeEEeecc--eEEEcCCCCCc---
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT----FNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPL---  155 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~---  155 (299)
                      |++||||++.+. .+|+.|.+|++|++++|.+....    +.|....+ ...|+|+||+.+|+.  +++++|++++.   
T Consensus        83 ~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~-~~~G~~aey~~v~~~~~~l~~vP~~~~~~~~  160 (393)
T TIGR02819        83 IKIGDIVSVPFN-IACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG-GWVGGQSEYVMVPYADFNLLKFPDRDQALEK  160 (393)
T ss_pred             ccCCCEEEEecc-cCCCCChHHHCcCcccCcCCCCCCccceecccccC-CCCCceEEEEEechhhCceEECCCccccccc
Confidence            999999988765 48999999999999999975321    11110001 136999999999964  79999998754   


Q ss_pred             -ccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEE-EeCCchHHHHHHHhcCCCEEEeCC
Q 022313          156 -ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV-LSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       156 -~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~-~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                       ..++.+.+++.++|+++... .++++++|+|.|+|++|++++|+|+..|+++++ +++++++++.+ +++|++.+.+..
T Consensus       161 ~~~~a~l~~~~~ta~~a~~~~-~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a-~~~Ga~~v~~~~  238 (393)
T TIGR02819       161 IRDLTMLSDIFPTGYHGAVTA-GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQA-RSFGCETVDLSK  238 (393)
T ss_pred             ccceeeeccHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH-HHcCCeEEecCC
Confidence             35678888999999998764 459999999998999999999999999996544 45666677777 689997544333


Q ss_pred             CH---HHHHHhc--CCccEEEEcCCCc--------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          234 DL---EQMKALG--KSLDFIIDTASGD--------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       234 ~~---~~~~~~~--~~~d~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.   +.+.++.  .++|++||++|.+              .+++.++++++++|+++.+|..
T Consensus       239 ~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       239 DATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             cccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            22   3344443  4799999999986              3699999999999999999986

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=7.7e-40  Score=296.03  Aligned_cols=267  Identities=27%  Similarity=0.421  Sum_probs=226.9

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccC-CCCCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNK-HGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~-~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      +.+++++.+.|++.++||+|||+++++|++|++.+.+. ......|.++|||++|+|+++|+++..+ +||+|++.+.. 
T Consensus         9 ~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~-   86 (349)
T TIGR03201         9 KPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVI-   86 (349)
T ss_pred             CCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCC-
Confidence            34888999999999999999999999999999877443 3233568899999999999999999877 99999876664 


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCC------CCCcccccccchhhHHHHHHh
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN------DYPLALAAPLLCAGITVYTPM  172 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~------~~~~~~aa~~~~~~~ta~~al  172 (299)
                      +|++|.+|+.+++++|....+  .     |....|+|+||+.+|++.++++|+      ++++++++.+.+++.++|+++
T Consensus        87 ~cg~c~~c~~g~~~~c~~~~~--~-----g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~  159 (349)
T TIGR03201        87 PCGECELCKTGRGTICRAQKM--P-----GNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAA  159 (349)
T ss_pred             CCCCChhhhCcCcccCCCCCc--c-----CcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHH
Confidence            999999999999999976432  1     223469999999999999999999      899999999999999999998


Q ss_pred             hhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH---HH---HHHhc--CC
Q 022313          173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL---EQ---MKALG--KS  244 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~---~~~~~--~~  244 (299)
                      ... .++++++|+|+|+|++|++++|+|+..|++|+++++++++++.+ +++|++++++..+.   +.   +.+++  .+
T Consensus       160 ~~~-~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g  237 (349)
T TIGR03201       160 VQA-GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM-KGFGADLTLNPKDKSAREVKKLIKAFAKARG  237 (349)
T ss_pred             Hhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceEecCccccHHHHHHHHHhhcccCC
Confidence            764 45999999999999999999999999999999999999998888 68999998886542   12   22332  46


Q ss_pred             cc----EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          245 LD----FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       245 ~d----~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|    ++||++|+......++++++++|+++.+|.. ...++++.+++.+++++.|.
T Consensus       238 ~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~  295 (349)
T TIGR03201       238 LRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGN  295 (349)
T ss_pred             CCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEE
Confidence            65    8999999987788899999999999999988 55678888888888888874

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=4.1e-39  Score=289.50  Aligned_cols=278  Identities=32%  Similarity=0.592  Sum_probs=241.4

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+..+.+.+++++++.|++.++||+||+.++++|++|.+.+.|..+....|.++|||++|+|+++|+++.++++||+
T Consensus         2 ~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   81 (333)
T cd08296           2 KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGDR   81 (333)
T ss_pred             eEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCCE
Confidence            45666555467999999999999999999999999999999988886643456889999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |++.+....|+.|++|..++++.|....+.       |....|++++|+.++.+.++++|+++++.+++.+++++.++|+
T Consensus        82 V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~-------~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  154 (333)
T cd08296          82 VGVGWHGGHCGTCDACRRGDFVHCENGKVT-------GVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFN  154 (333)
T ss_pred             EEeccccCCCCCChhhhCcCcccCCCCCcc-------CcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHH
Confidence            988766678999999999999999976532       2223589999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhcCCccE
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALGKSLDF  247 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~d~  247 (299)
                      ++... .++++++|+|+|+|.+|++++++|+..|++|+++++++++++.+ +++|++++++....+.   +.+. +++|+
T Consensus       155 ~~~~~-~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~-~~~d~  231 (333)
T cd08296         155 ALRNS-GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLA-RKLGAHHYIDTSKEDVAEALQEL-GGAKL  231 (333)
T ss_pred             HHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-HHcCCcEEecCCCccHHHHHHhc-CCCCE
Confidence            98776 66999999999999999999999999999999999998888888 7899999988765433   2223 57999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++|++|....+..++++++++|+++.+|.. ...+++...++.+++++.|+.
T Consensus       232 vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  283 (333)
T cd08296         232 ILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWP  283 (333)
T ss_pred             EEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeC
Confidence            999997666689999999999999999988 667788888889999999863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.7e-39  Score=292.75  Aligned_cols=268  Identities=15%  Similarity=0.153  Sum_probs=211.9

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC----CCCCccccccccEEEEEecCCCC
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~----~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      |+.+++.+ ..++.+++++.+.|+ +++||+|||+++|||++|++.+.|.+..    ..+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRL-VRPKFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEE-eccceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            34555666 366789999999995 9999999999999999999999886532    357999999999999998764  


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      .|++||+|.+.+.. +|+ |..|.  ..+.|.+..+.       |....|+|+||+.+|++.++++|+++++++|+ +..
T Consensus        77 ~~~vGdrV~~~~~~-~~~-~~~~~--~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~  144 (341)
T cd08237          77 TYKVGTKVVMVPNT-PVE-KDEII--PENYLPSSRFR-------SSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTE  144 (341)
T ss_pred             ccCCCCEEEECCCC-Cch-hcccc--hhccCCCccee-------EecCCCceEEEEEEchHHeEECCCCCChHHhh-hhc
Confidence            69999999886654 476 44553  45667654321       12245999999999999999999999998876 445


Q ss_pred             hhHHHHHHhhhcc--CCCCCCEEEEEcCChHHHHHHHHHHH-CC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH
Q 022313          164 AGITVYTPMMRHK--MNQPGKSLGVIGLGGLGHMAVKFGKA-FG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK  239 (299)
Q Consensus       164 ~~~ta~~al~~~~--~~~~g~~vlI~G~g~~G~~a~~~a~~-~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  239 (299)
                      ++.++|+++....  .++++++|+|+|+|++|++++|+++. .| .+|+++++++++++.+ ++.+.+..++    +...
T Consensus       145 ~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a-~~~~~~~~~~----~~~~  219 (341)
T cd08237         145 LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF-SFADETYLID----DIPE  219 (341)
T ss_pred             hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH-hhcCceeehh----hhhh
Confidence            8888899886432  34889999999999999999999986 55 4899999998888887 4566554321    1111


Q ss_pred             HhcCCccEEEEcCCC---chhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          240 ALGKSLDFIIDTASG---DHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       240 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                        ..++|+|||++|+   ..++..++++++++|+++.+|.. ...++++..++.|+++++|+.
T Consensus       220 --~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~  280 (341)
T cd08237         220 --DLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSS  280 (341)
T ss_pred             --ccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEec
Confidence              1369999999995   34688999999999999999987 566788888999999999863

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=2.4e-38  Score=287.53  Aligned_cols=284  Identities=26%  Similarity=0.361  Sum_probs=237.4

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC------
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR------   84 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~------   84 (299)
                      +++.+.+..+.+++++++.|+++++||+|||.++++|++|.+.+.|.++....|.++|||++|+|+++|+++..      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            45566555558999999999999999999999999999999988887653457889999999999999999986      


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCC--CCccCCcceeeEEeecc-eEEEcCCCCCccccccc
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDAD--GTITKGGYSSYIVVHER-YCYKIANDYPLALAAPL  161 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~  161 (299)
                      |++||+|...+.. +|+.|.+|+.+.++.|....+.  |...+  +....|+|++|+.++++ .++++|++++...++.+
T Consensus        82 ~~~Gd~V~~~~~~-~~~~c~~~~~~~~~~c~~~~~~--~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~  158 (361)
T cd08231          82 LKVGDRVTWSVGA-PCGRCYRCLVGDPTKCENRKKY--GHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPA  158 (361)
T ss_pred             cCCCCEEEEcccC-CCCCChhHhCcCccccccchhc--cccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHh
Confidence            9999999876554 8999999999999999876432  22110  11236999999999986 79999999999999988


Q ss_pred             chhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH----
Q 022313          162 LCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE----  236 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~----  236 (299)
                      ++++.|+|+++......+++++|||+|+|++|++++++|+..|+ +|+++++++++.+.+ +++|++++++.++..    
T Consensus       159 ~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~  237 (361)
T cd08231         159 NCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA-REFGADATIDIDELPDPQR  237 (361)
T ss_pred             cCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCCeEEcCcccccHHH
Confidence            89999999999888776799999999999999999999999999 999999888888877 689999988766421    


Q ss_pred             --HHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeeec
Q 022313          237 --QMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       237 --~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~~  298 (299)
                        .+.+..  +++|++||++|+...+..++++++++|+++.+|..   ...+++...++.+++++.++.
T Consensus       238 ~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (361)
T cd08231         238 RAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVH  306 (361)
T ss_pred             HHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcc
Confidence              233333  57999999999866689999999999999999976   245566666788999998863

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-38  Score=287.66  Aligned_cols=274  Identities=22%  Similarity=0.363  Sum_probs=222.3

Q ss_pred             EEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           12 GWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      ++.+. .++.+++++.+.|++ .++||+|||+++++|++|++.+.+... ...|.++|||++|+|+++|+++++|++||+
T Consensus         3 a~~~~-~~~~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~   80 (347)
T PRK10309          3 SVVND-TDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPGDA   80 (347)
T ss_pred             eEEEe-CCCceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCCCE
Confidence            44443 355789999999998 589999999999999999875322111 235789999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |.+.+.. +|+.|.+|+.+.++.|....+.       |....|+|+||+.++++.++++|+++++++++.+. .+.++|+
T Consensus        81 V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~  151 (347)
T PRK10309         81 VACVPLL-PCFTCPECLRGFYSLCAKYDFI-------GSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLH  151 (347)
T ss_pred             EEECCCc-CCCCCcchhCcCcccCCCccee-------ccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHH
Confidence            9887665 7999999999999999864332       22356999999999999999999999999988764 4566788


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHhc--CCc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKALG--KSL  245 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~--~~~  245 (299)
                      ++... .++++++|+|+|+|++|++++|+|+..|++ |+++++++++++.+ +++|++++++.++.  +.+.+..  .++
T Consensus       152 ~~~~~-~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        152 AFHLA-QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA-KSLGAMQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             HHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcCCceEecCcccCHHHHHHHhcCCCC
Confidence            76544 458999999999999999999999999996 78888888888877 78999999886643  2233332  478


Q ss_pred             c-EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeCh---hhhhcCCeeeeeec
Q 022313          246 D-FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSP---ASLNIGNAPLFRFK  298 (299)
Q Consensus       246 d-~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~---~~l~~~~~~~~g~~  298 (299)
                      | ++|||+|+...+..++++++++|+++.+|.. ...+++.   ..++.|++++.|+.
T Consensus       230 d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~  287 (347)
T PRK10309        230 DQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSW  287 (347)
T ss_pred             CeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEe
Confidence            8 9999999877789999999999999999987 4333432   46788999999863

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3.8e-38  Score=283.65  Aligned_cols=284  Identities=55%  Similarity=0.914  Sum_probs=247.6

Q ss_pred             EEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEE
Q 022313           12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V   91 (299)
                      +|+.+...+.+++++++.|++.++|++||+.++++|++|++.+.|.+.....|.++|||++|+|+++|+++..|++||+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V   81 (337)
T cd05283           2 GYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRV   81 (337)
T ss_pred             ceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCEE
Confidence            45666777889999999999999999999999999999999988876545568899999999999999999999999999


Q ss_pred             EEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHH
Q 022313           92 GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTP  171 (299)
Q Consensus        92 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~a  171 (299)
                      .+.+...+|++|.+|.++..++|+...+.+.|....+....|+|++|+.++.+.++++|+++++++++.+.+.+.++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  161 (337)
T cd05283          82 GVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSP  161 (337)
T ss_pred             EEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHH
Confidence            76666679999999999999999887655444443344557999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEc
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      ++... ++++++++|.|+|.+|++++++|+..|++++++++++++.+.+ +++|++++++...........+++|++||+
T Consensus       162 ~~~~~-~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~  239 (337)
T cd05283         162 LKRNG-VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDA-LKLGADEFIATKDPEAMKKAAGSLDLIIDT  239 (337)
T ss_pred             HHhcC-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence            87776 5999999998889999999999999999999999998888888 689999998877654444556789999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +++......++++++++|+++.+|.. ....+++..++.+++++.|+
T Consensus       240 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~  286 (337)
T cd05283         240 VSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGS  286 (337)
T ss_pred             CCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEe
Confidence            99875588999999999999999988 44467778888899999885

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.5e-39  Score=263.10  Aligned_cols=251  Identities=24%  Similarity=0.332  Sum_probs=225.9

Q ss_pred             cccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcc
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      +.+...+.-.++.+.+++++.+.|+|+|+|++||-.++|+|..|.++++|.+...+.|+++|-|++|+|+++|+++++++
T Consensus         8 ~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvtdrk   87 (336)
T KOG1197|consen    8 LLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVTDRK   87 (336)
T ss_pred             hheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCccccc
Confidence            44455555556788899999999999999999999999999999999999997788999999999999999999999999


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||||+..                                   ...|.|+|+..+|...+.++|++++++.||++...++
T Consensus        88 vGDrVayl-----------------------------------~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~l  132 (336)
T KOG1197|consen   88 VGDRVAYL-----------------------------------NPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGL  132 (336)
T ss_pred             cccEEEEe-----------------------------------ccchhhheeccccceeeccCCcccCHHHHHHHHHHHH
Confidence            99999753                                   2459999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh----
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL----  241 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----  241 (299)
                      |||..+++...+++|++|||+.+ |++|+++.|+++..|+++|.+..+.++.+.+ ++-|+++.++++.++.++++    
T Consensus       133 TAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~a-kenG~~h~I~y~~eD~v~~V~kiT  211 (336)
T KOG1197|consen  133 TAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIA-KENGAEHPIDYSTEDYVDEVKKIT  211 (336)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHH-HhcCCcceeeccchhHHHHHHhcc
Confidence            99999999999999999999976 9999999999999999999999999999988 68999999999998877665    


Q ss_pred             -cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeee
Q 022313          242 -GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPL  294 (299)
Q Consensus       242 -~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~  294 (299)
                       ++|+|+++|.+|... +..++.+|++.|+++.+|+.  ...++++..|-.|.+++
T Consensus       212 ngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~l  266 (336)
T KOG1197|consen  212 NGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQL  266 (336)
T ss_pred             CCCCceeeeccccchh-hHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhh
Confidence             379999999999986 99999999999999999988  45666666666666554

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=6.3e-38  Score=285.87  Aligned_cols=288  Identities=25%  Similarity=0.357  Sum_probs=234.9

Q ss_pred             ccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCc
Q 022313            6 ASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      +..+++++.+..+++.++++++|.|++.++||+|||+++++|++|++.+.|.+. ..+|.++|||++|+|+++|++++.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   82 (373)
T cd08299           4 KVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTV   82 (373)
T ss_pred             ccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccC
Confidence            445567777777778899999999999999999999999999999999888653 3568899999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCcccccccccc-ccccC--------CC-----CccCCcceeeEEeecceEEEcCC
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDA--------DG-----TITKGGYSSYIVVHERYCYKIAN  151 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~~--------~g-----~~~~g~~~~~~~~~~~~~~~~p~  151 (299)
                      ++||+|.+.+ ..+|++|.+|+.++++.|......- .++..        +|     ....|+|+||+.++++.++++|+
T Consensus        83 ~~Gd~V~~~~-~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~  161 (373)
T cd08299          83 KPGDKVIPLF-VPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA  161 (373)
T ss_pred             CCCCEEEECC-CCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence            9999998765 4599999999999999998753210 11110        01     01358999999999999999999


Q ss_pred             CCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEE
Q 022313          152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFV  230 (299)
Q Consensus       152 ~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~  230 (299)
                      ++++++++.+.+++.++|+++.....++++++|+|+|+|++|++++++|+..|+ +|+++++++++++.+ +++|+++++
T Consensus       162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~lGa~~~i  240 (373)
T cd08299         162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KELGATECI  240 (373)
T ss_pred             CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceEe
Confidence            999999999999999999987666677999999999989999999999999999 899999999999888 689999998


Q ss_pred             eCCCH-----HHHHHh-cCCccEEEEcCCCchhHHHHHHhc-ccCcEEEEEcCC-C--ceeeChhhhhcCCeeeeee
Q 022313          231 VSSDL-----EQMKAL-GKSLDFIIDTASGDHPFDAYMSLL-KVAGVYVLVGFP-S--KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       231 ~~~~~-----~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~  297 (299)
                      +..+.     +.+.++ .+++|+++|++|+...+..++..+ +++|+++.+|.. .  ..++++.. +.+++++.|+
T Consensus       241 ~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~  316 (373)
T cd08299         241 NPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPML-LLTGRTWKGA  316 (373)
T ss_pred             cccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHH-HhcCCeEEEE
Confidence            76542     122222 357999999999866677766655 679999999987 3  34454442 3467787775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1e-37  Score=282.34  Aligned_cols=277  Identities=25%  Similarity=0.367  Sum_probs=230.6

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC-C----------CCCCCccccccccEEEEEec
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH-G----------DSKYPLVPGHEIVGIVKEVG   79 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~-~----------~~~~p~~lG~e~~G~V~~vG   79 (299)
                      +++.+. .++.+++++++.|++.++||+||+.++++|++|++.+.+.. .          ....|.++|||++|+|+++|
T Consensus         2 ka~~~~-~~~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG   80 (351)
T cd08233           2 KAARYH-GRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVG   80 (351)
T ss_pred             ceEEEe-cCCceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeC
Confidence            345553 45679999999999999999999999999999987664321 1          11368899999999999999


Q ss_pred             CCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccc
Q 022313           80 HNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAA  159 (299)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa  159 (299)
                      +++++|++||+|...+. .+|++|.+|+++.+..|....+.  +..    ...|+|++|+.++.+.++++|+++++++++
T Consensus        81 ~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa  153 (351)
T cd08233          81 SGVTGFKVGDRVVVEPT-IKCGTCGACKRGLYNLCDSLGFI--GLG----GGGGGFAEYVVVPAYHVHKLPDNVPLEEAA  153 (351)
T ss_pred             CCCCCCCCCCEEEECCC-CCCCCChHHhCcCcccCCCCcee--ccC----CCCCceeeEEEechHHeEECcCCCCHHHhh
Confidence            99999999999987654 48999999999999999865421  110    125899999999999999999999999887


Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH-
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ-  237 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-  237 (299)
                      .+ .++.++|+++. ...++++++|+|+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|++.++++++.+. 
T Consensus       154 ~~-~~~~ta~~~l~-~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~ga~~~i~~~~~~~~  230 (351)
T cd08233         154 LV-EPLAVAWHAVR-RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA-EELGATIVLDPTEVDVV  230 (351)
T ss_pred             hc-cHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEECCCccCHH
Confidence            66 57789999984 4456999999999999999999999999999 899998888888877 6799999998776433 


Q ss_pred             --HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          238 --MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       238 --~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                        +.+..  +++|+++|++|+...++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       231 ~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~  296 (351)
T cd08233         231 AEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSI  296 (351)
T ss_pred             HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEe
Confidence              33332  46999999999766689999999999999999988 667788888999999999863

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=8.1e-37  Score=277.92  Aligned_cols=286  Identities=27%  Similarity=0.447  Sum_probs=237.5

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |+|+++.+.+.++.+++.+.+.|++.++||+|||.++++|++|++.+.|.++ ...|.++|||++|+|+++|+++.++++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            4667777765556788999999999999999999999999999999888664 346789999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccc-cccccCCC---------------CccCCcceeeEEeecceEEEcCC
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAIDADG---------------TITKGGYSSYIVVHERYCYKIAN  151 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~g---------------~~~~g~~~~~~~~~~~~~~~~p~  151 (299)
                      ||+|.+.+  .+|+.|.+|+.+..++|...... +.+...+|               ....|+|++|+.++++.++++|+
T Consensus        80 Gd~V~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          80 GDHVVLSF--ASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCEEEEcc--cCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            99998754  38999999999999999864321 11111111               12358999999999999999999


Q ss_pred             CCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEE
Q 022313          152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFV  230 (299)
Q Consensus       152 ~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~  230 (299)
                      ++++++++.+++++.|++.++.....++++++|+|+|+|++|++++|+|+..|+ .++++++++++.+.+ +++|+++++
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~-~~~g~~~~i  236 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELA-KELGATHVI  236 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCcEEe
Confidence            999999999999999999988776677999999999889999999999999999 588888888777766 789999998


Q ss_pred             eCCCHH---HHHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          231 VSSDLE---QMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       231 ~~~~~~---~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +..+..   .+.+. .+++|+++|++|+...+..++++++++|+++.+|..   ....+++..++.+++++.++
T Consensus       237 ~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  310 (365)
T cd08278         237 NPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGV  310 (365)
T ss_pred             cCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEe
Confidence            876532   23222 468999999999866689999999999999999975   34567777776888888775

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=3.2e-36  Score=274.00  Aligned_cols=282  Identities=24%  Similarity=0.361  Sum_probs=233.8

Q ss_pred             EEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEE
Q 022313           12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V   91 (299)
                      ++.+...++++++++++.|++.++||+|++.++++|++|++.+.+.+. ...|.++|||++|+|+++|+++..+++||+|
T Consensus         3 a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~V   81 (365)
T cd05279           3 AAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGDKV   81 (365)
T ss_pred             eeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCCEE
Confidence            455555667899999999999999999999999999999998887654 3457799999999999999999999999999


Q ss_pred             EEeccccCCCCCccccCCCCccccccccc-cccccCCC-------------CccCCcceeeEEeecceEEEcCCCCCccc
Q 022313           92 GVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAIDADG-------------TITKGGYSSYIVVHERYCYKIANDYPLAL  157 (299)
Q Consensus        92 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~g-------------~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  157 (299)
                      .+.+. .+|++|.+|..+++++|....+. ..|...+|             ....|+|++|+.++++.++++|+++++++
T Consensus        82 v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~  160 (365)
T cd05279          82 IPLFG-PQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEK  160 (365)
T ss_pred             EEcCC-CCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHHH
Confidence            87654 48999999999999999876543 11111111             11247999999999999999999999999


Q ss_pred             ccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCH-
Q 022313          158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDL-  235 (299)
Q Consensus       158 aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-  235 (299)
                      ++.+.+++.++|+++.....++++++|||+|+|++|++++++|+..|++ ++++++++++.+.+ +++|++++++..+. 
T Consensus       161 a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~  239 (365)
T cd05279         161 VCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKA-KQLGATECINPRDQD  239 (365)
T ss_pred             hhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCCeeccccccc
Confidence            9999999999999987777779999999998899999999999999995 67777788888877 78999998876654 


Q ss_pred             -HH---HHHh-cCCccEEEEcCCCchhHHHHHHhcc-cCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          236 -EQ---MKAL-GKSLDFIIDTASGDHPFDAYMSLLK-VAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       236 -~~---~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~-~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                       +.   +.+. .+++|+++|++|....+..++++++ ++|+++.+|..   ....++...+ .++.++.|+
T Consensus       240 ~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~  309 (365)
T cd05279         240 KPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGT  309 (365)
T ss_pred             chHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEE
Confidence             22   2222 4689999999987666899999999 99999999875   4567777777 677787764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=6.4e-37  Score=255.62  Aligned_cols=259  Identities=24%  Similarity=0.269  Sum_probs=224.8

Q ss_pred             ccccccceEEeeeCCC-CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCC
Q 022313            4 ETASKDCLGWAARDPS-GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      |+.+.++..+.-++.| +.+++++++.|+.+.++|+||..|+.||++|+..++|.++ .+++|.+-|.|++|+|+.+|+.
T Consensus        16 ~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~   95 (354)
T KOG0025|consen   16 MPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSN   95 (354)
T ss_pred             cccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCC
Confidence            4555566666665554 4578899999999888899999999999999999999998 5678999999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccccc
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPL  161 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  161 (299)
                      ++.|++||+|....                                  ...|+|++|.+.+++.+++++++++++.||++
T Consensus        96 vkgfk~Gd~VIp~~----------------------------------a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~  141 (354)
T KOG0025|consen   96 VKGFKPGDWVIPLS----------------------------------ANLGTWRTEAVFSESDLIKVDKDIPLASAATL  141 (354)
T ss_pred             cCccCCCCeEeecC----------------------------------CCCccceeeEeecccceEEcCCcCChhhhhee
Confidence            99999999997422                                  35799999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCEEEeCCCH--
Q 022313          162 LCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADKFVVSSDL--  235 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v~~~~~~--  235 (299)
                      ..+.+|||.+|...-.+++|++|+-.|+ +++|++.+|+|++.|.+-+-++|+....++++   +.+|+++|+...+.  
T Consensus       142 ~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~  221 (354)
T KOG0025|consen  142 SVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRD  221 (354)
T ss_pred             ccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcc
Confidence            9999999999999888899999988898 99999999999999999888888876665543   56799999854432  


Q ss_pred             -HHHHH--hcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          236 -EQMKA--LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       236 -~~~~~--~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                       +....  ...++.+.|||+|+.. .....+.|.++|+++++|.+  .++.++...+++|.|+++||
T Consensus       222 ~~~~k~~~~~~~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGf  287 (354)
T KOG0025|consen  222 RKMKKFKGDNPRPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGF  287 (354)
T ss_pred             hhhhhhhccCCCceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeee
Confidence             12211  1367899999999987 88899999999999999888  89999999999999999998

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.6e-36  Score=270.84  Aligned_cols=274  Identities=22%  Similarity=0.312  Sum_probs=222.2

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. .++.+++.+++.|++.++|++||+.++++|++|++.+.|..+..++|.++|||++|+|+++|+++..+++||+
T Consensus         2 ~a~~~~-~~~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~   80 (339)
T PRK10083          2 KSIVIE-KPNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGER   80 (339)
T ss_pred             eEEEEe-cCCeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCCE
Confidence            344443 4667999999999999999999999999999999988876654456889999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |.+.+.. +|+.|.+|..+++++|.+..+.       +....|+|++|+.++.+.++++|++++++.++ +..++.++|+
T Consensus        81 V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~  151 (339)
T PRK10083         81 VAVDPVI-SCGHCYPCSIGKPNVCTSLVVL-------GVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAAN  151 (339)
T ss_pred             EEEcccc-CCCCCccccCcCcccCCCCceE-------EEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHH
Confidence            9887665 7999999999999999865431       11235899999999999999999999998876 5567788886


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHH-CCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh---cCCc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKA-FGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL---GKSL  245 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~-~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~---~~~~  245 (299)
                      +.. ...++++++|+|+|+|++|++++|+|+. +|++ ++++++++++.+.+ +++|++++++.++....+.+   ..++
T Consensus       152 ~~~-~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~g~~~  229 (339)
T PRK10083        152 VTG-RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA-KESGADWVINNAQEPLGEALEEKGIKP  229 (339)
T ss_pred             HHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH-HHhCCcEEecCccccHHHHHhcCCCCC
Confidence            554 4456999999999999999999999996 5995 66677777777776 68999999987653332322   2346


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                      |++||++|+...+..++++++++|+++.+|.. ....++...+..+++++.+
T Consensus       230 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  281 (339)
T PRK10083        230 TLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFS  281 (339)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEE
Confidence            79999999766699999999999999999987 4444555555567777665

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=1.3e-36  Score=270.30  Aligned_cols=247  Identities=21%  Similarity=0.198  Sum_probs=195.8

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecc-cchhhhhccCCCC---CCCCccccccccEEEEEecCCCCCc
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVC-YADVIWTRNKHGD---SKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~-~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      ++++.+. .++.+++.+.+.|++.++||+|||+++++| ++|++.+.|.++.   ..+|.++|||++|+|+++|+++ +|
T Consensus         2 ~ka~~~~-~~~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~   79 (308)
T TIGR01202         2 TQAIVLS-GPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GF   79 (308)
T ss_pred             ceEEEEe-CCCeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CC
Confidence            4455553 567899999999999999999999999996 7999888886542   3569999999999999999998 69


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||+|++.     |..|..|..                     ...|+|+||+.+|++.++++|++++++. +.+ ..+
T Consensus        80 ~vGdrV~~~-----~~~c~~~~~---------------------~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~  131 (308)
T TIGR01202        80 RPGDRVFVP-----GSNCYEDVR---------------------GLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALA  131 (308)
T ss_pred             CCCCEEEEe-----Ccccccccc---------------------ccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHH
Confidence            999999752     333332211                     1248999999999999999999998864 444 457


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCC
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  244 (299)
                      .++|+++... . .++++++|+|+|++|++++|+|+..|++ |++++.++++++.+ .+   ..++++.+.     ...+
T Consensus       132 ~~a~~~~~~~-~-~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a-~~---~~~i~~~~~-----~~~g  200 (308)
T TIGR01202       132 ATARHAVAGA-E-VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA-TG---YEVLDPEKD-----PRRD  200 (308)
T ss_pred             HHHHHHHHhc-c-cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh-hh---ccccChhhc-----cCCC
Confidence            8999998764 3 4688999999999999999999999996 55556665565544 22   344444321     3468


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|++||++|+...++.++++++++|+++.+|.. ...++++..++.|+++++|.
T Consensus       201 ~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~  254 (308)
T TIGR01202       201 YRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIA  254 (308)
T ss_pred             CCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEe
Confidence            999999999977689999999999999999987 56678888888999999875

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=3.3e-36  Score=264.32  Aligned_cols=228  Identities=26%  Similarity=0.348  Sum_probs=193.2

Q ss_pred             cccccccEEEEEecCCCC------CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccC--CCCccCCccee
Q 022313           66 VPGHEIVGIVKEVGHNVS------RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA--DGTITKGGYSS  137 (299)
Q Consensus        66 ~lG~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~g~~~~  137 (299)
                      ++|||++|+|+++|++++      ++++||||.+.+. .+|+.|.+|+.+.+++|.+..+.  |...  .+....|+|+|
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~-~~cg~C~~C~~g~~~~C~~~~~~--g~~~~~~~~~~~G~~ae   77 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVT-VPCGRCFRCRRGLPQKCDSLRKY--GHEALDSGWPLSGGYAE   77 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCC-CCCCCChhhhCcCcccCCChhhc--CcccccCCcccccccee
Confidence            589999999999999998      8999999987665 48999999999999999875432  2211  12224699999


Q ss_pred             eEEeecc-eEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCch
Q 022313          138 YIVVHER-YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTS  215 (299)
Q Consensus       138 ~~~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~  215 (299)
                      |+.+|++ .++++|+++++++++++.+.+.|+|++++.... .++++|||+|+|++|++++|+|+..|++ |++++++++
T Consensus        78 y~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366        78 HCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             eEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            9999997 799999999999999999999999999987766 6999999999999999999999999996 888888888


Q ss_pred             HHHHHHHhcCCCEEEeCCCH-HHHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhc
Q 022313          216 KKEEALSLLGADKFVVSSDL-EQMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNI  289 (299)
Q Consensus       216 ~~~~~~~~~g~~~v~~~~~~-~~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~  289 (299)
                      +.+.+ +++|++.+++..+. +.+.++.  .++|++||++|....++.++++++++|+++.+|..   ...++++..++.
T Consensus       157 r~~~a-~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~  235 (280)
T TIGR03366       157 RRELA-LSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVR  235 (280)
T ss_pred             HHHHH-HHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHh
Confidence            87777 78999998876543 2233332  57999999999887789999999999999999975   346788899999


Q ss_pred             CCeeeeeec
Q 022313          290 GNAPLFRFK  298 (299)
Q Consensus       290 ~~~~~~g~~  298 (299)
                      |++++.|+.
T Consensus       236 ~~~~i~g~~  244 (280)
T TIGR03366       236 RWLTIRGVH  244 (280)
T ss_pred             CCcEEEecC
Confidence            999999864

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.1e-35  Score=269.02  Aligned_cols=278  Identities=20%  Similarity=0.252  Sum_probs=223.8

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. +++.+++.+.+.|.+.++||+|||+++++|++|++.+.+.+.....|.++|||++|+|+++|+++.++++||+
T Consensus         2 ka~~~~-~~~~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~   80 (351)
T cd08285           2 KAFAML-GIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGDR   80 (351)
T ss_pred             ceEEEc-cCCccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCCE
Confidence            345553 4456888899999999999999999999999999888776544456889999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcccccccchhhHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |...+. .+|+.|..|..+++..|.+..   .++.. +....|+|++|+.++.+  .++++|+++++++++.++..+.|+
T Consensus        81 V~~~~~-~~~~~c~~c~~g~~~~~~~~~---~~~~~-~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta  155 (351)
T cd08285          81 VIVPAI-TPDWRSVAAQRGYPSQSGGML---GGWKF-SNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTG  155 (351)
T ss_pred             EEEcCc-CCCCCCHHHHCcCcccCcCCC---CCccc-cCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhH
Confidence            987665 489999999999999998742   11111 22346999999999974  899999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--  242 (299)
                      |+++... .++++++|||+|+|++|++++|+|+..|+ .++++++++++.+.+ +++|++++++..+.+.   +..+.  
T Consensus       156 ~~~~~~~-~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~i~~~~~~  233 (351)
T cd08285         156 FHGAELA-NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELA-KEYGATDIVDYKNGDVVEQILKLTGG  233 (351)
T ss_pred             HHHHHcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCceEecCCCCCHHHHHHHHhCC
Confidence            9997544 55999999999889999999999999999 588888887777666 6899999988765332   33332  


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc--eeeCh--hhhhcCCeeeee
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK--VKFSP--ASLNIGNAPLFR  296 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~--~~~~~--~~l~~~~~~~~g  296 (299)
                      +++|+++|++|+...+..++++++++|+++.+|.. ..  .+++.  ..+..+.+++.+
T Consensus       234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  292 (351)
T cd08285         234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTING  292 (351)
T ss_pred             CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEE
Confidence            57999999999876689999999999999999987 32  33432  222345555554

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.6e-35  Score=266.62  Aligned_cols=278  Identities=30%  Similarity=0.458  Sum_probs=234.5

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCccc
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +++.+..+.+.+++.+.+.|++.++||+||+.++++|++|+..+.|.+.   ....|.++|+|++|+|+++|+++.+|++
T Consensus         2 ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~   81 (340)
T cd05284           2 KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKE   81 (340)
T ss_pred             eeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcC
Confidence            3555544446788889999999999999999999999999988877654   2345788999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|...+.. .|+.|..|+.+...+|.+..+.       |....|+|++|+.++++.++++|+++++++++.+++.+.|
T Consensus        82 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~t  153 (340)
T cd05284          82 GDPVVVHPPW-GCGTCRYCRRGEENYCENARFP-------GIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLT  153 (340)
T ss_pred             CCEEEEcCCC-CCCCChHHhCcCcccCCCCccc-------CccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHH
Confidence            9999876554 7999999999999999987653       2234699999999999999999999999999999999999


Q ss_pred             HHHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHhc-
Q 022313          168 VYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKALG-  242 (299)
Q Consensus       168 a~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~-  242 (299)
                      ||+++... ..+.++++|||+|+|.+|++++++|+..| .+|+++++++++.+.+ +++|.+++++.++.  +.+.++. 
T Consensus       154 a~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~~~  232 (340)
T cd05284         154 AYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA-ERLGADHVLNASDDVVEEVRELTG  232 (340)
T ss_pred             HHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH-HHhCCcEEEcCCccHHHHHHHHhC
Confidence            99999775 45688999999999889999999999999 7999999998888887 78999999887754  2233333 


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                       .++|+++|++|+......++++++++|+++.+|.....+++...++.+++++.++
T Consensus       233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~  288 (340)
T cd05284         233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGHGRLPTSDLVPTEISVIGS  288 (340)
T ss_pred             CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCCCccCHHHhhhcceEEEEE
Confidence             4799999999986668999999999999999997733555666656788888875

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=3e-35  Score=264.74  Aligned_cols=276  Identities=26%  Similarity=0.456  Sum_probs=230.9

Q ss_pred             eEEeeeCCCCccc-ceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLS-PYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+.. ++... +++++.|++.++||+|||+++++|++|++.+.|.++. ..|.++|||++|+|+++|+++.+|++||
T Consensus         2 ka~~~~~-~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          2 KAAVVNK-DHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             eEEEecC-CCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            3444433 34444 8899999999999999999999999999888776542 3367899999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|.+.+...+|+.|.+|..+....|....+  .     |....|++++|+.++.+.++++|+++++.+++.++..+.|+|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~  152 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN--A-----GYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTY  152 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc--c-----CccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHH
Confidence            999888888999999999999999987642  1     223469999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-H---HHHHHhcCC
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKA-FGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-L---EQMKALGKS  244 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~-~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~~~~  244 (299)
                      +++. ...++++++|||+|+|++|++++++|+. .|++|+++++++++.+.+ +++|++.+++.++ .   +.+.+..++
T Consensus       153 ~~~~-~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~v~~~~~~  230 (338)
T PRK09422        153 KAIK-VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALA-KEVGADLTINSKRVEDVAKIIQEKTGG  230 (338)
T ss_pred             HHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHcCCcEEecccccccHHHHHHHhcCC
Confidence            9984 4456999999999999999999999998 499999999999998888 7899999888753 2   233344457


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|+++++.++...+..++++++++|+++.+|.. ...+++...+..+++++.|+
T Consensus       231 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  284 (338)
T PRK09422        231 AHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGS  284 (338)
T ss_pred             CcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEe
Confidence            896655555556699999999999999999977 55667777788888888774

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=6.4e-35  Score=265.28  Aligned_cols=284  Identities=26%  Similarity=0.396  Sum_probs=235.1

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+....+.+++++++.|++.++||+|++.++++|+.|...+.|.++ ..+|.++|+|++|+|+++|+++..|++||+
T Consensus         2 ~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (363)
T cd08279           2 RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGDH   80 (363)
T ss_pred             eEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCCE
Confidence            4566655556789999999999999999999999999999998887665 356778999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccC--------CC-----CccCCcceeeEEeecceEEEcCCCCCccc
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA--------DG-----TITKGGYSSYIVVHERYCYKIANDYPLAL  157 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~--------~g-----~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  157 (299)
                      |...+. .+|++|.+|+++...+|.+..+..++...        +|     ....|+|++|+.++.+.++++|+++++++
T Consensus        81 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~  159 (363)
T cd08279          81 VVLSWI-PACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDR  159 (363)
T ss_pred             EEECCC-CCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHH
Confidence            987655 49999999999999999875432222111        11     12469999999999999999999999999


Q ss_pred             ccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH
Q 022313          158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE  236 (299)
Q Consensus       158 aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  236 (299)
                      ++.+++.+.++|.++.....+.++++|+|+|+|++|++++++|+..|++ |+++++++++.+.+ +++|++++++.+...
T Consensus       160 aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~-~~~g~~~vv~~~~~~  238 (363)
T cd08279         160 AALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELA-RRFGATHTVNASEDD  238 (363)
T ss_pred             eehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHhCCeEEeCCCCcc
Confidence            9999999999999987777779999999998899999999999999995 88988888888777 689999988776533


Q ss_pred             H---HHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          237 Q---MKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       237 ~---~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .   +.++  .+++|+++|++++......++++++++|+++.+|..   ....++..++..++..+.++
T Consensus       239 ~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  307 (363)
T cd08279         239 AVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGS  307 (363)
T ss_pred             HHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEE
Confidence            2   3333  367999999999766689999999999999999876   35567777777677776654

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=6.8e-35  Score=263.80  Aligned_cols=278  Identities=30%  Similarity=0.458  Sum_probs=231.8

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC------------CCCCCccccccccEEEEEe
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG------------DSKYPLVPGHEIVGIVKEV   78 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~------------~~~~p~~lG~e~~G~V~~v   78 (299)
                      +++.+......+++.+++.|++.++||+|++.++++|++|++.+.|.++            ....|.++|+|++|+|+++
T Consensus         2 ~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   81 (350)
T cd08240           2 KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAV   81 (350)
T ss_pred             eeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEee
Confidence            4555555556688999999999999999999999999999998877543            1234678999999999999


Q ss_pred             cCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc
Q 022313           79 GHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA  158 (299)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a  158 (299)
                      |+++..+++||+|...+.. .|+.|..|.++++.+|....+.       |....|++++|+.++.+.++++|+++++.++
T Consensus        82 G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~a  153 (350)
T cd08240          82 GPDAADVKVGDKVLVYPWI-GCGECPVCLAGDENLCAKGRAL-------GIFQDGGYAEYVIVPHSRYLVDPGGLDPALA  153 (350)
T ss_pred             CCCCCCCCCCCEEEECCcC-CCCCChHHHCcCcccCCCCCce-------eeeccCcceeeEEecHHHeeeCCCCCCHHHe
Confidence            9999999999999876654 8999999999999999765322       1124689999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      +.+.+.+.+||+++.....++++++|+|+|+|++|++++|+|+..|+ +|++++.++++.+.+ +++|++.+++.++.+.
T Consensus       154 a~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~  232 (350)
T cd08240         154 ATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAA-KAAGADVVVNGSDPDA  232 (350)
T ss_pred             ehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCcEEecCCCccH
Confidence            99999999999999888776789999999889999999999999999 788888888888877 7899988887765332


Q ss_pred             ---HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          238 ---MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       238 ---~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                         +.+. .+++|+++|++|.......++++++++|+++.+|.. ....++...+.++++++.++
T Consensus       233 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~  297 (350)
T cd08240         233 AKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGS  297 (350)
T ss_pred             HHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEc
Confidence               3333 247999999999766699999999999999999877 33344555556688888875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.3e-34  Score=261.41  Aligned_cols=278  Identities=27%  Similarity=0.417  Sum_probs=234.6

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+......+++++++.|.+.++||+||+.++++|++|+..+.|..+....|.++|+|++|.|+.+|+++..|++||+
T Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~   81 (345)
T cd08260           2 RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGDR   81 (345)
T ss_pred             eeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCCE
Confidence            55555444456888999999999999999999999999999888887654456788999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcccccccchhhHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |.. +....|++|.+|..+..+.|.+..+.       +....|+|++|+.+++.  .++++|+++++++++.++..+.++
T Consensus        82 V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta  153 (345)
T cd08260          82 VTV-PFVLGCGTCPYCRAGDSNVCEHQVQP-------GFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATA  153 (345)
T ss_pred             EEE-CCCCCCCCCccccCcCcccCCCCccc-------ccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHH
Confidence            977 44468999999999999999986321       11235899999999974  899999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-HHHH---HHh-cC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-LEQM---KAL-GK  243 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~---~~~-~~  243 (299)
                      |+++.....+.++++|+|+|+|++|++++++|+..|.+|+++++++++.+.+ +++|++++++.++ .+..   ..+ .+
T Consensus       154 ~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~  232 (345)
T cd08260         154 FRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA-RELGAVATVNASEVEDVAAAVRDLTGG  232 (345)
T ss_pred             HHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHhCCCEEEccccchhHHHHHHHHhCC
Confidence            9998766667899999999999999999999999999999999999988888 6799999998776 3322   222 24


Q ss_pred             CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--Cc--eeeChhhhhcCCeeeeee
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SK--VKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~--~~~~~~~l~~~~~~~~g~  297 (299)
                      ++|++||++|+......++++++++|+++.+|..  ..  ..+++..++.+++++.++
T Consensus       233 ~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (345)
T cd08260         233 GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGS  290 (345)
T ss_pred             CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeC
Confidence            7999999999755688999999999999999987  22  466766777888888875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=8e-35  Score=262.78  Aligned_cols=276  Identities=24%  Similarity=0.366  Sum_probs=231.1

Q ss_pred             EEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           12 GWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      ++.+. .++.+++++++.|++ .++||+||++++++|++|+..+.|.++..+.|.++|||++|+|+++|+++.++++||+
T Consensus         3 a~~~~-~~~~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~   81 (345)
T cd08286           3 ALVYH-GPGKISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDR   81 (345)
T ss_pred             eEEEe-cCCceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCCCE
Confidence            44443 455699999999986 8999999999999999999998887654455789999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcccccccchhhHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |++.+.. .|+.|.+|..+.+..|....+..      |....|+|++|+.++.+  .++++|++++..+++.+++.+.++
T Consensus        82 V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta  154 (345)
T cd08286          82 VLISCIS-SCGTCGYCRKGLYSHCESGGWIL------GNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTG  154 (345)
T ss_pred             EEECCcC-CCCCChHHHCcCcccCCCccccc------ccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHH
Confidence            9876554 79999999999999998764421      22346999999999987  899999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh--c
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL--G  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~--~  242 (299)
                      |.++.....+.++++|||.|+|.+|++++|+|+..| .+++++++++++.+.+ +++|++++++..+.+.   +.+.  .
T Consensus       155 ~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~i~~~~~~  233 (345)
T cd08286         155 YECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVA-KKLGATHTVNSAKGDAIEQVLELTDG  233 (345)
T ss_pred             HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCceeccccccHHHHHHHHhCC
Confidence            987666666799999999988999999999999999 6888887777776666 6899999988765332   2222  2


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                      +++|+++|++++......+++.++++|+++.+|.. ...++++..++.|++++.+
T Consensus       234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  288 (345)
T cd08286         234 RGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITT  288 (345)
T ss_pred             CCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEe
Confidence            57999999999876688899999999999999976 4566777777888988876

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.2e-34  Score=265.42  Aligned_cols=283  Identities=22%  Similarity=0.275  Sum_probs=228.6

Q ss_pred             eEEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+. .++.+++.+.+.|.+ ++++|+||+.++++|++|++.+.|.++..+.|.++|||++|+|+++|+++.++++||
T Consensus         2 ~a~~~~-~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   80 (386)
T cd08283           2 KALVWH-GKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVGD   80 (386)
T ss_pred             eeEEEe-cCCCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCCC
Confidence            345553 567899999999998 499999999999999999999988776555688999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCcccccccccc-----cccc---CCC-----CccCCcceeeEEeecc--eEEEcCCCCC
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-----NAID---ADG-----TITKGGYSSYIVVHER--YCYKIANDYP  154 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-----~~~~---~~g-----~~~~g~~~~~~~~~~~--~~~~~p~~~~  154 (299)
                      +|+..+.. .||+|.+|+.+.+++|++.....     .|+.   ..|     ....|+|++|+.++.+  .++++|++++
T Consensus        81 ~V~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~  159 (386)
T cd08283          81 RVVVPFTI-ACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLS  159 (386)
T ss_pred             EEEEcCcC-CCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCCCC
Confidence            99876554 79999999999999998753221     0000   001     1236999999999987  8999999999


Q ss_pred             cccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC
Q 022313          155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       155 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                      +++++.++..+.++|+++ ....++++++|||+|+|.+|++++++|+..|+ +++++++++++.+.+ ++++...+++..
T Consensus       160 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~-~~~~~~~vi~~~  237 (386)
T cd08283         160 DEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA-RSHLGAETINFE  237 (386)
T ss_pred             HHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCcEEEcCC
Confidence            999999999999999998 55566999999999889999999999999998 699999998888888 566434566655


Q ss_pred             CHH-H---HHHhc--CCccEEEEcCCCc---------------------hhHHHHHHhcccCcEEEEEcCC-C-ceeeCh
Q 022313          234 DLE-Q---MKALG--KSLDFIIDTASGD---------------------HPFDAYMSLLKVAGVYVLVGFP-S-KVKFSP  284 (299)
Q Consensus       234 ~~~-~---~~~~~--~~~d~v~d~~g~~---------------------~~~~~~~~~l~~~G~~v~~g~~-~-~~~~~~  284 (299)
                      ..+ .   +.++.  +++|++||++|+.                     ..++.++++++++|+++.+|.. . ...+++
T Consensus       238 ~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~  317 (386)
T cd08283         238 EVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPI  317 (386)
T ss_pred             cchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCH
Confidence            432 2   22332  4799999999853                     2478899999999999999987 2 345666


Q ss_pred             hhhhcCCeeeeee
Q 022313          285 ASLNIGNAPLFRF  297 (299)
Q Consensus       285 ~~l~~~~~~~~g~  297 (299)
                      ..++.|++++.+.
T Consensus       318 ~~~~~~~~~i~~~  330 (386)
T cd08283         318 GAAMNKGLTLRMG  330 (386)
T ss_pred             HHHHhCCcEEEec
Confidence            6678888888774

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=8.3e-35  Score=261.42  Aligned_cols=274  Identities=26%  Similarity=0.396  Sum_probs=229.3

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+.+.++.+++++++.|++.++|++||++++++|++|++...|.++..++|.++|||++|+|+++|+++..+++||+
T Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~   81 (334)
T PRK13771          2 KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGDR   81 (334)
T ss_pred             eeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCCE
Confidence            34555445555999999999999999999999999999999888876654456788999999999999999988999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |++.+. .+|+.|++|..+.++.|+...+.       |....|+|++|+.++.+.++++|+++++.+++.+.+.+.++|+
T Consensus        82 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~  153 (334)
T PRK13771         82 VASLLY-APDGTCEYCRSGEEAYCKNRLGY-------GEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYR  153 (334)
T ss_pred             EEECCC-CCCcCChhhcCCCcccCcccccc-------ccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHH
Confidence            987655 49999999999999999886432       2234699999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-HHHHHHhcCCccEE
Q 022313          171 PMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-LEQMKALGKSLDFI  248 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~v  248 (299)
                      ++... .++++++|+|+|+ |.+|++++++|+..|++++++++++++.+.+ +++ ++++++.++ .+.+.+. .++|++
T Consensus       154 ~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~v~~~-~~~d~~  229 (334)
T PRK13771        154 GLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV-SKY-ADYVIVGSKFSEEVKKI-GGADIV  229 (334)
T ss_pred             HHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHH-HHHhcCchhHHHHHHhc-CCCcEE
Confidence            98877 6699999999998 9999999999999999999999998888887 567 766665542 1223333 479999


Q ss_pred             EEcCCCchhHHHHHHhcccCcEEEEEcCC-Cce--eeChhhhhcCCeeeeee
Q 022313          249 IDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKV--KFSPASLNIGNAPLFRF  297 (299)
Q Consensus       249 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~--~~~~~~l~~~~~~~~g~  297 (299)
                      +|++|+.. ...++++++++|+++.+|.. ...  +++...++.+++++.++
T Consensus       230 ld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  280 (334)
T PRK13771        230 IETVGTPT-LEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGH  280 (334)
T ss_pred             EEcCChHH-HHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEe
Confidence            99999875 88999999999999999977 221  34455556788888774

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=1.4e-34  Score=261.22  Aligned_cols=277  Identities=22%  Similarity=0.340  Sum_probs=225.9

Q ss_pred             EEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           12 GWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      ++.+. .++.+++.+++.|++ .++||+||+.++++|++|++.+.|.++..+.|.++|+|++|+|+++|+++.++++||+
T Consensus         3 a~~~~-~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   81 (347)
T cd05278           3 ALVYL-GPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDR   81 (347)
T ss_pred             eEEEe-cCCceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCCCE
Confidence            45553 456688999999999 9999999999999999999988887765566889999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcccccccchhhHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |...+. +.||.|.+|..+...+|....+...    .+....|+|++|+.++++  .++++|+++++++++.+++++.||
T Consensus        82 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta  156 (347)
T cd05278          82 VSVPCI-TFCGRCRFCRRGYHAHCENGLWGWK----LGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTG  156 (347)
T ss_pred             EEecCC-CCCCCChhHhCcCcccCcCCCcccc----cccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhhe
Confidence            987644 5899999999999999987543321    122346999999999987  899999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--  242 (299)
                      |+++. ...++++++|||.|+|.+|++++|+|+..|. +++++++++++.+.+ +++|++++++.++.+.   +....  
T Consensus       157 ~~~~~-~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~i~~~~~~  234 (347)
T cd05278         157 FHGAE-LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLA-KEAGATDIINPKNGDIVEQILELTGG  234 (347)
T ss_pred             eehhh-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH-HHhCCcEEEcCCcchHHHHHHHHcCC
Confidence            99984 4566999999998889999999999999996 888887777777666 6899999988776433   22222  


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cceee-ChhhhhcCCeeeee
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKF-SPASLNIGNAPLFR  296 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~-~~~~l~~~~~~~~g  296 (299)
                      +++|++||++++...+..++++++++|+++.+|.. ..... .....+.+++++.+
T Consensus       235 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  290 (347)
T cd05278         235 RGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKT  290 (347)
T ss_pred             CCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEe
Confidence            57999999999855589999999999999999866 22211 11233456776665

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-34  Score=256.25  Aligned_cols=277  Identities=24%  Similarity=0.404  Sum_probs=228.4

Q ss_pred             EEeeeCC-CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           12 GWAARDP-SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      ++...+. ++.+++++++.|++.++||+|||.++++|++|.+...+.+.....|.++|+|++|+|+.+|+++..|++||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~   82 (306)
T cd08258           3 ALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVGDR   82 (306)
T ss_pred             eEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCCCE
Confidence            4444443 356899999999999999999999999999999888776533345778999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |...+..+.|+.|.+|..+.+..|+.....       |....|+|++|+.++...++++|+++++.+++ +...+.++|+
T Consensus        83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~  154 (306)
T cd08258          83 VVSETTFSTCGRCPYCRRGDYNLCPHRKGI-------GTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVH  154 (306)
T ss_pred             EEEccCcCCCCCCcchhCcCcccCCCCcee-------eecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHH
Confidence            988776779999999999999999864211       12345899999999999999999999999876 7778889999


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC-ch-HHHHHHHhcCCCEEEeCCCHHH---HHHh--cC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS-TS-KKEEALSLLGADKFVVSSDLEQ---MKAL--GK  243 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~-~~-~~~~~~~~~g~~~v~~~~~~~~---~~~~--~~  243 (299)
                      ++.....++++++|||.|+|.+|++++++|+..|++|+++..+ ++ +.+.+ +++|++++ +....+.   +...  .+
T Consensus       155 ~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~l~~~~~~~  232 (306)
T cd08258         155 AVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVA-KELGADAV-NGGEEDLAELVNEITDGD  232 (306)
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHH-HHhCCccc-CCCcCCHHHHHHHHcCCC
Confidence            9877777799999999888999999999999999998877433 33 44444 78998877 6654332   2222  25


Q ss_pred             CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++|+++|+.|+.......++.++++|+++.+|..  ....++...++.|+++++|+.
T Consensus       233 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~  289 (306)
T cd08258         233 GADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSR  289 (306)
T ss_pred             CCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEe
Confidence            7999999998766688999999999999999998  367778888889999999974

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.3e-34  Score=266.00  Aligned_cols=268  Identities=19%  Similarity=0.261  Sum_probs=221.8

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC----------CCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG----------DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~----------~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      .+++++++.|+++++||+||+.++++|++|++...+...          ....+.++|||++|+|+++|++++.+++||+
T Consensus        29 ~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~  108 (393)
T cd08246          29 AIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDE  108 (393)
T ss_pred             ceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCE
Confidence            578899999999999999999999999999887766411          0112347899999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |.+.+. ..|+.|..|..+.+.+|....  +.|..    ...|+|++|+.++...++++|+++++++++.+++++.|+|+
T Consensus       109 V~~~~~-~~~~~~~~c~~~~~~~~~~~~--~~g~~----~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~  181 (393)
T cd08246         109 VVVHCS-VWDGNDPERAGGDPMFDPSQR--IWGYE----TNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYR  181 (393)
T ss_pred             EEEecc-ccccCcccccccccccccccc--ccccc----CCCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHH
Confidence            987654 479999999999999998643  22221    24699999999999999999999999999999999999999


Q ss_pred             Hhhhc--cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH------------
Q 022313          171 PMMRH--KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL------------  235 (299)
Q Consensus       171 al~~~--~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~------------  235 (299)
                      ++...  ..++++++|+|+|+ |++|++++++|+..|++++++++++++.+.+ +++|++++++.++.            
T Consensus       182 al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~-~~~G~~~~i~~~~~~~~~~~~~~~~~  260 (393)
T cd08246         182 MLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC-RALGAEGVINRRDFDHWGVLPDVNSE  260 (393)
T ss_pred             HHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHcCCCEEEcccccccccccccccch
Confidence            98654  45689999999997 9999999999999999999999988888888 67999998876321            


Q ss_pred             -------------HHHHHhc--C-CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          236 -------------EQMKALG--K-SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       236 -------------~~~~~~~--~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                                   +.+.++.  . ++|+++|++|+.. +..++++++++|+++.+|..  ....++...++.++.++.|.
T Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~  339 (393)
T cd08246         261 AYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGS  339 (393)
T ss_pred             hhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEec
Confidence                         1122332  3 7999999999854 89999999999999999876  34556777777888888764

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=2.8e-34  Score=257.59  Aligned_cols=277  Identities=40%  Similarity=0.657  Sum_probs=233.5

Q ss_pred             EEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEE
Q 022313           12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV   91 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V   91 (299)
                      ++.+.+..+.+++.+++.|.+.+++++|++.++++|++|.+.+.|.+....+|.++|||++|+|+.+|+++.+|++||+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V   81 (330)
T cd08245           2 AAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRV   81 (330)
T ss_pred             eEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCEE
Confidence            34454454689999999999999999999999999999999888766444567789999999999999999999999999


Q ss_pred             EEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHH
Q 022313           92 GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTP  171 (299)
Q Consensus        92 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~a  171 (299)
                      ++.+...+|+.|.+|.++.++.|.+..+.       +....|+|++|+.++.+.++++|+++++.+++.+.+.+.++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~  154 (330)
T cd08245          82 GVGWLVGSCGRCEYCRRGLENLCQKAVNT-------GYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSA  154 (330)
T ss_pred             EEccccCCCCCChhhhCcCcccCcCcccc-------CcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHH
Confidence            88776678999999999999999986542       11245899999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEc
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +.. ..++++++|+|+|+|.+|++++++|+..|.+|+++++++++.+.+ +++|++.+++..+........+++|+++++
T Consensus       155 l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~  232 (330)
T cd08245         155 LRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA-RKLGADEVVDSGAELDEQAAAGGADVILVT  232 (330)
T ss_pred             HHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhCCcEEeccCCcchHHhccCCCCEEEEC
Confidence            876 456999999999988899999999999999999999999998888 678988888766543332234679999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++.......++++++++|+++.+|..  ....++..+++.+++++.++
T Consensus       233 ~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (330)
T cd08245         233 VVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGS  280 (330)
T ss_pred             CCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEe
Confidence            88766689999999999999999876  33333355677788887664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=4.2e-34  Score=257.59  Aligned_cols=270  Identities=32%  Similarity=0.554  Sum_probs=231.8

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      +..+++.+++.|.+.++|++||+.++++|++|...+.+.++. ...|.++|+|++|+|+++|+++..+++||+|...+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~   90 (341)
T cd08297          11 EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLY   90 (341)
T ss_pred             CCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCCCCEEEEecCC
Confidence            357899999999999999999999999999999888776542 2346678999999999999999999999999887777


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                      .+|+.|++|..++..+|.+..+.       |....|++++|+.++.+.++++|+++++.+++.++..+.|||+++... .
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~-~  162 (341)
T cd08297          91 DACGKCEYCRTGDETLCPNQKNS-------GYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKA-G  162 (341)
T ss_pred             CCCCCCccccCCCcccCCCcccc-------ccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhc-C
Confidence            89999999999999999875332       223468999999999999999999999999999999999999998775 5


Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh--cCCccEEEEc
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL--GKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~--~~~~d~v~d~  251 (299)
                      ++++++|||+|+ +.+|++++++|+..|++|+++++++++.+.+ +++|++++++..+.+.   +.+.  .+++|+++|+
T Consensus       163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~  241 (341)
T cd08297         163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA-KELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVT  241 (341)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEc
Confidence            699999999998 6799999999999999999999999888888 6899999988776433   3333  3679999998


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .++......++++++++|+++.+|..  ...+++...++.+++++.++
T Consensus       242 ~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  289 (341)
T cd08297         242 AVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGS  289 (341)
T ss_pred             CCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEe
Confidence            87766689999999999999999977  33467777777899998874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.2e-34  Score=258.66  Aligned_cols=277  Identities=18%  Similarity=0.297  Sum_probs=221.2

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC---------CCCCccccccccEEEEEecCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD---------SKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~---------~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      +++.+. .++.+++++.+.|++.++||+||++++++|++|++.+.|....         .+.|.++|||++|+|+++|++
T Consensus         2 ka~~~~-~~~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~   80 (350)
T cd08256           2 RAVVCH-GPQDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEG   80 (350)
T ss_pred             eeEEEe-cCCceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCC
Confidence            355554 4567999999999999999999999999999999888775310         145778999999999999999


Q ss_pred             CC--CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc-eEEEcCCCCCcccc
Q 022313           82 VS--RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER-YCYKIANDYPLALA  158 (299)
Q Consensus        82 v~--~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~~p~~~~~~~a  158 (299)
                      +.  +|++||+|...+. .+|+.|.+|+.+.+++|....  +.|...   ...|+|++|+.++++ .++++|++++++++
T Consensus        81 v~~~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~g~~~---~~~g~~~~~~~~~~~~~~~~lP~~~~~~~a  154 (350)
T cd08256          81 AEERGVKVGDRVISEQI-VPCWNCRFCNRGQYWMCQKHD--LYGFQN---NVNGGMAEYMRFPKEAIVHKVPDDIPPEDA  154 (350)
T ss_pred             cccCCCCCCCEEEECCc-CCCCCChHHhCcCcccCcCcc--ceeecc---CCCCcceeeEEcccccceEECCCCCCHHHH
Confidence            98  8999999987655 489999999999999997532  222110   146899999999988 57899999999999


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH-
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE-  236 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-  236 (299)
                      +.+ .++.++|+++ ....++++++|+|.|+|++|++++++|+.+|++ ++++++++++.+.+ +++|++++++....+ 
T Consensus       155 a~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~  231 (350)
T cd08256         155 ILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA-RKFGADVVLNPPEVDV  231 (350)
T ss_pred             hhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHH-HHcCCcEEecCCCcCH
Confidence            888 8899999998 445569999999977899999999999999985 66677777776655 789999888776432 


Q ss_pred             --HHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhh-hcCCeeeeee
Q 022313          237 --QMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASL-NIGNAPLFRF  297 (299)
Q Consensus       237 --~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l-~~~~~~~~g~  297 (299)
                        .+.++.  .++|+++|++|+...+..++++++++|+++.+|.. ....+++..+ ..+++++.|+
T Consensus       232 ~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~  298 (350)
T cd08256         232 VEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGS  298 (350)
T ss_pred             HHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEe
Confidence              233332  46999999999765688899999999999999877 4444555444 3567777664

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3e-34  Score=256.88  Aligned_cols=262  Identities=29%  Similarity=0.430  Sum_probs=220.5

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      +.+++.+.+.|+++++||+||+.++++|++|++.+.+ .....+|.++|||++|+|+.+|+++..|++||+|...+.. +
T Consensus        12 ~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~-~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-~   89 (325)
T cd08264          12 ENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINA-VKVKPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRV-F   89 (325)
T ss_pred             CceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhC-CCCCCCCeecccceeEEEEEECCCCCCCCCCCEEEECCCc-C
Confidence            5677888888889999999999999999999888764 2222357789999999999999999999999999877654 8


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                      |+.|.+|..+++++|.+..+.       |....|+|++|+.++++.++++|+++++++++.+++++.++|+++.. ..++
T Consensus        90 ~~~c~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~~  161 (325)
T cd08264          90 DGTCDMCLSGNEMLCRNGGII-------GVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGLG  161 (325)
T ss_pred             CCCChhhcCCCccccCcccee-------eccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCC
Confidence            999999999999999975432       22346899999999999999999999999999999999999999876 5669


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH-HHHHHhcCCccEEEEcCCCchh
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL-EQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      ++++|+|+|+ |++|++++++|+..|++|+++++    .+.+ +++|++++++.++. +.+.++.+++|++++++|+. .
T Consensus       162 ~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~-~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g~~-~  235 (325)
T cd08264         162 PGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWL-KEFGADEVVDYDEVEEKVKEITKMADVVINSLGSS-F  235 (325)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHH-HHhCCCeeecchHHHHHHHHHhCCCCEEEECCCHH-H
Confidence            9999999998 99999999999999999888863    3555 67999888876642 22333347899999999985 4


Q ss_pred             HHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          258 FDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ...++++++++|+++.+|..  ....+++..++.++.++.+.
T Consensus       236 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  277 (325)
T cd08264         236 WDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGS  277 (325)
T ss_pred             HHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEc
Confidence            89999999999999999975  34677777888888888774

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=2.2e-34  Score=265.64  Aligned_cols=268  Identities=18%  Similarity=0.296  Sum_probs=208.1

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhh-ccCCC-C-----CCCCccccccccEEEEEecC
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWT-RNKHG-D-----SKYPLVPGHEIVGIVKEVGH   80 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~-~g~~~-~-----~~~p~~lG~e~~G~V~~vG~   80 (299)
                      |+++++.+.+ ++.+++++++.|++.++||+|||+++++|++|++.+ .|... .     ...|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~-~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYG-KGDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEc-CCceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            5677877754 557999999999999999999999999999999876 44321 1     23688999999999999999


Q ss_pred             CCC-CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc----eEEEcCCCCCc
Q 022313           81 NVS-RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER----YCYKIANDYPL  155 (299)
Q Consensus        81 ~v~-~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~----~~~~~p~~~~~  155 (299)
                      +++ +|++||+|.+.+.. .|+.|.+|.        ..          |....|+|+||+.++++    .++++|+++++
T Consensus        80 ~v~~~~~vGdrV~~~~~~-~c~~~~~c~--------~~----------g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~  140 (410)
T cd08238          80 KWQGKYKPGQRFVIQPAL-ILPDGPSCP--------GY----------SYTYPGGLATYHIIPNEVMEQDCLLIYEGDGY  140 (410)
T ss_pred             CccCCCCCCCEEEEcCCc-CCCCCCCCC--------Cc----------cccCCCcceEEEEecHHhccCCeEECCCCCCH
Confidence            998 59999999876553 688887762        11          11246999999999987    68999999999


Q ss_pred             cccccc-c--hhhHHHHHHhh--------hccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCC---eEEEEeCCchHHHHH
Q 022313          156 ALAAPL-L--CAGITVYTPMM--------RHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGL---NVTVLSTSTSKKEEA  220 (299)
Q Consensus       156 ~~aa~~-~--~~~~ta~~al~--------~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~---~v~~~~~~~~~~~~~  220 (299)
                      ++++.+ +  +. .++++++.        ....++++++|+|+|+ |++|++++|+|+..|+   +|+++++++++++.+
T Consensus       141 ~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a  219 (410)
T cd08238         141 AEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARA  219 (410)
T ss_pred             HHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHH
Confidence            988744 2  22 22344432        2345689999999985 9999999999999754   799999999999988


Q ss_pred             HHhc--------CCC-EEEeCCC-H---HHHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--C--cee
Q 022313          221 LSLL--------GAD-KFVVSSD-L---EQMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--S--KVK  281 (299)
Q Consensus       221 ~~~~--------g~~-~v~~~~~-~---~~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~--~~~  281 (299)
                       +++        |++ .++++.+ .   +.+.++.  .++|++||++|....+..++++++++|+++.++..  .  ..+
T Consensus       220 -~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~  298 (410)
T cd08238         220 -QRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAP  298 (410)
T ss_pred             -HHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCcccc
Confidence             465        655 4666543 2   2233443  47999999999877799999999999988877543  2  357


Q ss_pred             eChhhhhcCCeeeeee
Q 022313          282 FSPASLNIGNAPLFRF  297 (299)
Q Consensus       282 ~~~~~l~~~~~~~~g~  297 (299)
                      +++..++.|+++++|.
T Consensus       299 ~~~~~~~~~~~~i~g~  314 (410)
T cd08238         299 LNFYNVHYNNTHYVGT  314 (410)
T ss_pred             ccHHHhhhcCcEEEEe
Confidence            8888999999999985

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=3.9e-34  Score=257.93  Aligned_cols=276  Identities=23%  Similarity=0.340  Sum_probs=223.6

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC---CCCCCCccccccccEEEEEecCCCCCccc
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH---GDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +++.+.+.++.+++.+++.|++.++||+||++++++|++|++++.+..   .....|.++|||++|+|+++|+++..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~   81 (341)
T PRK05396          2 KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKV   81 (341)
T ss_pred             ceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCC
Confidence            456665666779999999999999999999999999999998765532   12345778999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|...+. .+|+.|.+|..+.+++|....+.       +....|+|++|+.++.+.++++|+++++.+++.+ ..+.+
T Consensus        82 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~  152 (341)
T PRK05396         82 GDRVSGEGH-IVCGHCRNCRAGRRHLCRNTKGV-------GVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGN  152 (341)
T ss_pred             CCEEEECCC-CCCCCChhhhCcChhhCCCccee-------eecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHH
Confidence            999987655 48999999999999999865322       2234689999999999999999999999887744 45555


Q ss_pred             HHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc-
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG-  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~-  242 (299)
                      +++++.. . ..++++|+|.|+|++|++++|+|+..|+ +++++++++++.+.+ +++|++++++.++.+.   +.++. 
T Consensus       153 ~~~~~~~-~-~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~~~~~~~~  229 (341)
T PRK05396        153 AVHTALS-F-DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELA-RKMGATRAVNVAKEDLRDVMAELGM  229 (341)
T ss_pred             HHHHHHc-C-CCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHhCCcEEecCccccHHHHHHHhcC
Confidence            5555432 2 3689999998889999999999999999 688887777777666 7899999987765332   33332 


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                       +++|++|||.|+......++++++++|+++.+|.. ...++++..+..+++++.+|.
T Consensus       230 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~  287 (341)
T PRK05396        230 TEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIY  287 (341)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEE
Confidence             68999999999877789999999999999999977 445556677888999988863

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-33  Score=253.63  Aligned_cols=275  Identities=30%  Similarity=0.474  Sum_probs=228.9

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+...++.+.+++.+.|++.++||+|+++++++|++|++.+.|.++....|.++|||++|+|+++|+++..+++||+
T Consensus         2 ~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~   81 (332)
T cd08259           2 KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGDR   81 (332)
T ss_pred             eEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCCE
Confidence            35555444677888999999999999999999999999999998887655556789999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |+..... .|+.|.+|..+.+++|.+.  ...     |....|+|++|+.++.+.++++|+++++++++.+++++.++|+
T Consensus        82 V~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~  153 (332)
T cd08259          82 VILYYYI-PCGKCEYCLSGEENLCRNR--AEY-----GEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVH  153 (332)
T ss_pred             EEECCCC-CCcCChhhhCCCcccCCCc--ccc-----ccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHH
Confidence            9876543 7999999999999999875  222     2345699999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-HHHHHHhcCCccEE
Q 022313          171 PMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-LEQMKALGKSLDFI  248 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~v  248 (299)
                      +++. ..+.++++++|+|+ |.+|++++++++..|++++++++++++.+.+ ++++.+.+++..+ .+.+.+. .++|++
T Consensus       154 ~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~d~v  230 (332)
T cd08259         154 ALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL-KELGADYVIDGSKFSEDVKKL-GGADVV  230 (332)
T ss_pred             HHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHcCCcEEEecHHHHHHHHhc-cCCCEE
Confidence            9987 56699999999997 9999999999999999999999988888777 6788888776553 1222222 379999


Q ss_pred             EEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          249 IDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       249 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++|... ...++++++++|+++.+|..  ....++......+++++.++
T Consensus       231 ~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  280 (332)
T cd08259         231 IELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGS  280 (332)
T ss_pred             EECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEe
Confidence            99999876 88999999999999999876  22223444455677776654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.9e-34  Score=261.29  Aligned_cols=268  Identities=24%  Similarity=0.411  Sum_probs=219.4

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC------C-CCCCCccccccccEEEEEecCCCCCcccCCEEE
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH------G-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG   92 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~------~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~   92 (299)
                      ..+++++++.|+++++||+||++++++|++|++.+.+..      + ....|.++|||++|+|+++|+++.+|++||+|.
T Consensus        37 ~~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~  116 (384)
T cd08265          37 PELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVT  116 (384)
T ss_pred             CCEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEE
Confidence            359999999999999999999999999999998776321      1 134578999999999999999999999999998


Q ss_pred             EeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCC-------Ccccccccchhh
Q 022313           93 VGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDY-------PLALAAPLLCAG  165 (299)
Q Consensus        93 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~-------~~~~aa~~~~~~  165 (299)
                      +.+. .+|+.|..|..+++.+|....+  .     |....|+|++|+.++++.++++|+++       +.. ++.+..++
T Consensus       117 ~~~~-~~~~~~~~c~~~~~~~~~~~~~--~-----g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~  187 (384)
T cd08265         117 AEEM-MWCGMCRACRSGSPNHCKNLKE--L-----GFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPT  187 (384)
T ss_pred             ECCC-CCCCCChhhhCcCcccCCCcce--e-----eecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHH
Confidence            8766 4999999999999999986432  1     11236899999999999999999863       344 56677788


Q ss_pred             HHHHHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCH------HH
Q 022313          166 ITVYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDL------EQ  237 (299)
Q Consensus       166 ~ta~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~------~~  237 (299)
                      .++|+++... ..++++++|+|+|+|++|++++++|+..|+ +|+++++++++.+.+ +++|++++++.++.      +.
T Consensus       188 ~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~  266 (384)
T cd08265         188 SVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLA-KEMGADYVFNPTKMRDCLSGEK  266 (384)
T ss_pred             HHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEEcccccccccHHHH
Confidence            9999998655 567999999999889999999999999999 799988888766555 78999998876632      22


Q ss_pred             HHHhc--CCccEEEEcCCCc-hhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          238 MKALG--KSLDFIIDTASGD-HPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       238 ~~~~~--~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.++.  +++|+|+|+.|+. ..+..++++++++|+++.+|.. ...++++..+..+..++.|.
T Consensus       267 v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~  330 (384)
T cd08265         267 VMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGA  330 (384)
T ss_pred             HHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEe
Confidence            33332  5799999999974 3578899999999999999977 55566667777888888765

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=8.5e-34  Score=254.89  Aligned_cols=278  Identities=32%  Similarity=0.443  Sum_probs=234.2

Q ss_pred             eEEeeeCCCCc-ccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccC
Q 022313           11 LGWAARDPSGV-LSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      +++.+....+. +...+.+.|.+.+++|+|++.++++|+.|...+.|.+. ....|.++|+|++|+|+.+|+++..+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~G   81 (338)
T cd08254           2 KAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVG   81 (338)
T ss_pred             eeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCCC
Confidence            34444444444 67788899999999999999999999999998887664 33457789999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|...+. .+|+.|..|..+....|....+.       |....|+|++|+.++.+.++++|+++++.+++.++..+.++
T Consensus        82 d~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta  153 (338)
T cd08254          82 DRVAVPAV-IPCGACALCRRGRGNLCLNQGMP-------GLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTP  153 (338)
T ss_pred             CEEEECCC-CCCCCChhhhCcCcccCCCCCcc-------ccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHH
Confidence            99987665 48999999999999988654322       33456999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh-cCC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL-GKS  244 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~-~~~  244 (299)
                      |+++.....++++++|||.|+|.+|++++++|+..|++|+++++++++.+.+ +++|.+++++..+...   +... .++
T Consensus       154 ~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  232 (338)
T cd08254         154 YHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA-KELGADEVLNSLDDSPKDKKAAGLGGG  232 (338)
T ss_pred             HHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHhCCCEEEcCCCcCHHHHHHHhcCCC
Confidence            9999888778999999998889999999999999999999999999888888 6899988887664322   2112 367


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|+++|+++.....+.++++++++|+++.+|.. ....++...++.++.+++|+
T Consensus       233 ~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  286 (338)
T cd08254         233 FDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGS  286 (338)
T ss_pred             ceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEe
Confidence            999999999776789999999999999999987 55667778888888888864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=9.9e-34  Score=253.92  Aligned_cols=262  Identities=36%  Similarity=0.566  Sum_probs=222.6

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCC
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSC  100 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c  100 (299)
                      .+++.+.+.|.+.++||+||+.++++|++|++.+.|.++....|.++|||++|+|+++|+++.++++||+|.+.+...+|
T Consensus        16 ~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   95 (329)
T cd08298          16 PLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTC   95 (329)
T ss_pred             CceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCC
Confidence            67788888888999999999999999999999888876545568899999999999999999999999999887777899


Q ss_pred             CCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCC
Q 022313          101 RDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP  180 (299)
Q Consensus       101 ~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~  180 (299)
                      +.|.+|..+.+++|+...+.       |....|+|++|+.++.+.++++|+++++.+++.+++++.++|+++ ....+++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~  167 (329)
T cd08298          96 GECRYCRSGRENLCDNARFT-------GYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKP  167 (329)
T ss_pred             CCChhHhCcChhhCCCcccc-------ccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCC
Confidence            99999999999999876543       222358999999999999999999999999999999999999998 5666799


Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      +++++|+|+|++|++++++++..|++|+++++++++.+.+ +++|++.+++.+..     ..+++|+++++.+.....+.
T Consensus       168 ~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~-----~~~~vD~vi~~~~~~~~~~~  241 (329)
T cd08298         168 GQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELA-RELGADWAGDSDDL-----PPEPLDAAIIFAPVGALVPA  241 (329)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHH-HHhCCcEEeccCcc-----CCCcccEEEEcCCcHHHHHH
Confidence            9999999999999999999999999999999999888888 78999888766532     23579999998776667999


Q ss_pred             HHHhcccCcEEEEEcCC-C-ceeeChhhhhcCCeeeeee
Q 022313          261 YMSLLKVAGVYVLVGFP-S-KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       261 ~~~~l~~~G~~v~~g~~-~-~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++++++|+++.+|.. . ...+++.. +.++..+.++
T Consensus       242 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~  279 (329)
T cd08298         242 ALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSV  279 (329)
T ss_pred             HHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEe
Confidence            99999999999998865 2 22334333 3456666543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.4e-33  Score=256.89  Aligned_cols=284  Identities=26%  Similarity=0.445  Sum_probs=233.9

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC---ccc
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR---FKV   87 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~---~~~   87 (299)
                      +++.+......+++.+.+.|.+.++||+||+.++++|++|+..+.+.++. .+|.++|||++|+|+.+|+++.+   |++
T Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~~   80 (367)
T cd08263           2 KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLSV   80 (367)
T ss_pred             eeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCCC
Confidence            35666444456888999999999999999999999999999988876653 56789999999999999999988   999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCcccccccc-c-cccccCCC-------------CccCCcceeeEEeecceEEEcCCC
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVY-T-FNAIDADG-------------TITKGGYSSYIVVHERYCYKIAND  152 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~-~-~~~~~~~g-------------~~~~g~~~~~~~~~~~~~~~~p~~  152 (299)
                      ||+|...+ ..+|+.|.+|..+++++|.+..+ . ..+.+++|             ....|++++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~  159 (367)
T cd08263          81 GDRVVGSF-IMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPES  159 (367)
T ss_pred             CCEEEEcC-CCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECCCC
Confidence            99997643 34899999999999999998641 1 11111111             023689999999999999999999


Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +++.+++.++.++.|+|+++.....+.++++|||+|+|.+|++++++|+..|++ +++++.++++.+.+ +++|++++++
T Consensus       160 is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~-~~~g~~~v~~  238 (367)
T cd08263         160 LDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKA-KELGATHTVN  238 (367)
T ss_pred             CCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCceEec
Confidence            999999999999999999998777778999999998899999999999999997 88888888888777 6899999998


Q ss_pred             CCCHHH---HHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          232 SSDLEQ---MKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       232 ~~~~~~---~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+....   +...  ..++|+++|++++......++++++++|+++.+|..   ....+++..++.+++++.++
T Consensus       239 ~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  312 (367)
T cd08263         239 AAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGS  312 (367)
T ss_pred             CCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEec
Confidence            765433   2222  367999999999873488999999999999999876   24556767766788888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=1.2e-33  Score=259.98  Aligned_cols=285  Identities=19%  Similarity=0.259  Sum_probs=228.5

Q ss_pred             ccccccceEEee--eCC-CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC----------CCCCC-ccccc
Q 022313            4 ETASKDCLGWAA--RDP-SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG----------DSKYP-LVPGH   69 (299)
Q Consensus         4 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~----------~~~~p-~~lG~   69 (299)
                      +..+||+..+..  .+. ++.+++.+++.|.++++|++||+.++++|++|.+...+...          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            445566666643  333 35688999999999999999999999999999876654321          01223 27999


Q ss_pred             cccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEc
Q 022313           70 EIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI  149 (299)
Q Consensus        70 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  149 (299)
                      |++|+|+++|+++..+++||+|++.+. .+|++|.+|+.+++..|....+  .|..    ...|+|++|+.++.+.++++
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~g~~----~~~g~~ae~~~v~~~~~~~v  156 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCL-QVDLTAPDGRVGDPMLSSEQRI--WGYE----TNFGSFAEFALVKDYQLMPK  156 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccc-cccCCchhhccCcccccccccc--cccc----CCCccceEEEEechHHeEEC
Confidence            999999999999999999999987655 4899999999999999975432  1111    23689999999999999999


Q ss_pred             CCCCCcccccccchhhHHHHHHhhh--ccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC
Q 022313          150 ANDYPLALAAPLLCAGITVYTPMMR--HKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA  226 (299)
Q Consensus       150 p~~~~~~~aa~~~~~~~ta~~al~~--~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~  226 (299)
                      |+++++++++.+.+++.++|+++..  ...++++++|+|+|+ |.+|++++++|+..|++++++++++++.+.+ +++|+
T Consensus       157 P~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~-~~~g~  235 (398)
T TIGR01751       157 PKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYC-RELGA  235 (398)
T ss_pred             CCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHcCC
Confidence            9999999999999999999999865  355689999999998 9999999999999999999988888888877 57999


Q ss_pred             CEEEeCCCHH-------------------------HHHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--
Q 022313          227 DKFVVSSDLE-------------------------QMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--  277 (299)
Q Consensus       227 ~~v~~~~~~~-------------------------~~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--  277 (299)
                      +.+++.++..                         .+.++  .+++|++|||+|+.. +..++++++++|+++.+|..  
T Consensus       236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~  314 (398)
T TIGR01751       236 EAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FPTSVFVCRRGGMVVICGGTTG  314 (398)
T ss_pred             CEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHhhccCCEEEEEccccC
Confidence            9999865321                         11122  257999999999754 88999999999999999987  


Q ss_pred             CceeeChhhhhcCCeeeeee
Q 022313          278 SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       278 ~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ....++...++.++.++.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~  334 (398)
T TIGR01751       315 YNHDYDNRYLWMRQKRIQGS  334 (398)
T ss_pred             CCCCcCHHHHhhcccEEEcc
Confidence            33566677777777777664

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=6e-34  Score=254.98  Aligned_cols=241  Identities=20%  Similarity=0.252  Sum_probs=200.0

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCC-cccCCEEEEeccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSR-FKVGDHVGVGTYV   97 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~-~~~Gd~V~~~~~~   97 (299)
                      +.+++.+++.|.+.++||+||++++++|++|++.+.|.++. ...|.++|||++|+|+++|+++.+ |++||+|...+  
T Consensus        16 ~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~--   93 (324)
T cd08291          16 KELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLA--   93 (324)
T ss_pred             cEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecC--
Confidence            36788899999999999999999999999999988886542 356889999999999999999986 99999996411  


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                      ...|+|++|+.+|++.++++|+++++++++++++.+.|+|.++.. ..
T Consensus        94 --------------------------------~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~-~~  140 (324)
T cd08291          94 --------------------------------GSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLET-AR  140 (324)
T ss_pred             --------------------------------CCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHh-hc
Confidence                                            013899999999999999999999999999888888999865543 33


Q ss_pred             CCCCCEEEEE--cCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEE
Q 022313          178 NQPGKSLGVI--GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIID  250 (299)
Q Consensus       178 ~~~g~~vlI~--G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d  250 (299)
                       .++++++|+  |+|++|++++|+|+..|++|+++++++++.+.+ +++|++++++.++.+.   +.+..  +++|++||
T Consensus       141 -~~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid  218 (324)
T cd08291         141 -EEGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLL-KKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFD  218 (324)
T ss_pred             -cCCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEE
Confidence             355566665  459999999999999999999999999888888 6899999998776433   33332  57999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC--Cce-eeChhhhhcCCeeeeeec
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP--SKV-KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~-~~~~~~l~~~~~~~~g~~  298 (299)
                      ++|+.. ....+++++++|+++.+|..  ... .++...++.|++++.|+.
T Consensus       219 ~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (324)
T cd08291         219 AVGGGL-TGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFW  268 (324)
T ss_pred             CCCcHH-HHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEE
Confidence            999876 78889999999999999976  222 366778888999998863

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.3e-33  Score=250.53  Aligned_cols=266  Identities=20%  Similarity=0.293  Sum_probs=220.4

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. .++.+++++++.|+++++||+||++++++|++|...+.|.++   .|.++|||++|+|+++|++   +++||+
T Consensus         2 ~a~~~~-~~~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~~   74 (319)
T cd08242           2 KALVLD-GGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGKR   74 (319)
T ss_pred             eeEEEe-CCCcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCCe
Confidence            355554 356799999999999999999999999999999988877653   5778999999999999988   689999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |...+. .+|+.|.+|..+.+..|.+....  +.    ....|+|++|+.++.+.++++|++++.++++.+ ..+.++|.
T Consensus        75 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~  146 (319)
T cd08242          75 VVGEIN-IACGRCEYCRRGLYTHCPNRTVL--GI----VDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALE  146 (319)
T ss_pred             EEECCC-cCCCCChhhhCcCcccCCCCccc--Cc----cCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHH
Confidence            976555 47999999999999998875432  10    023589999999999999999999999887754 45556666


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEE
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      ++. ...++++++|+|+|+|.+|++++|+|+..|+++++++.++++.+.+ +++|++.+++..+.    .-.+++|+++|
T Consensus       147 ~~~-~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~~~~~~~----~~~~~~d~vid  220 (319)
T cd08242         147 ILE-QVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALA-RRLGVETVLPDEAE----SEGGGFDVVVE  220 (319)
T ss_pred             HHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHcCCcEEeCcccc----ccCCCCCEEEE
Confidence            654 4556999999999989999999999999999999999998888888 56999888776432    12367999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++|+...+..++++++++|+++..+.. ....++...+..++++++|.
T Consensus       221 ~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~  268 (319)
T cd08242         221 ATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGS  268 (319)
T ss_pred             CCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEE
Confidence            999866689999999999999998766 56677777888899998875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=3.7e-33  Score=251.59  Aligned_cols=275  Identities=25%  Similarity=0.381  Sum_probs=228.7

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. .++.+.+.+.+.|++.+++|+|+++++++|+.|+..+.|.+.....|.++|+|++|+|+++|+++..+++||+
T Consensus         2 ~~~~~~-~~~~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~   80 (343)
T cd08235           2 KAAVLH-GPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGDR   80 (343)
T ss_pred             eEEEEe-cCCceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCCE
Confidence            355553 4567889999999999999999999999999999988776543345678999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce-----EEEcCCCCCcccccccchhh
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY-----CYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-----~~~~p~~~~~~~aa~~~~~~  165 (299)
                      |...+ ..+|++|.+|.+++.+.|.+..+.       |....|+|++|+.++++.     ++++|+++++.+++.+ ..+
T Consensus        81 V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~  151 (343)
T cd08235          81 VFVAP-HVPCGECHYCLRGNENMCPNYKKF-------GNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPL  151 (343)
T ss_pred             EEEcc-CCCCCCChHHHCcCcccCCCccee-------ccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHH
Confidence            98754 458999999999999999876432       223469999999999988     9999999999998766 788


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL  241 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~  241 (299)
                      .++|+++... .++++++|+|+|+|.+|++++++|+..|++ ++++++++++.+.+ +++|.++++++++.+.   +.+.
T Consensus       152 ~~a~~~l~~~-~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~  229 (343)
T cd08235         152 ACCINAQRKA-GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA-KKLGADYTIDAAEEDLVEKVREL  229 (343)
T ss_pred             HHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCcEEecCCccCHHHHHHHH
Confidence            9999998766 579999999998899999999999999998 98888888888887 5899999888776433   2233


Q ss_pred             c--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          242 G--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       242 ~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .  +++|+++|++++......++++++++|+++.+|..   ....+++..+..+++++.++
T Consensus       230 ~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  290 (343)
T cd08235         230 TDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGS  290 (343)
T ss_pred             hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEE
Confidence            2  46999999999775688999999999999999876   23556666777788888765

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=3.6e-33  Score=251.93  Aligned_cols=275  Identities=22%  Similarity=0.310  Sum_probs=222.5

Q ss_pred             eEEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+. .++.+++++++.|.+ +++||+||+.++++|++|++.+.|.++ ...|.++|||++|+|+++|+++..+++||
T Consensus         2 ~~~~~~-~~~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (345)
T cd08287           2 RATVIH-GPGDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP-TRAPAPIGHEFVGVVEEVGSEVTSVKPGD   79 (345)
T ss_pred             ceeEEe-cCCceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC-CCCCcccccceEEEEEEeCCCCCccCCCC
Confidence            344453 456799999999996 899999999999999999888877664 24578899999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCccccc-----ccc
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAA-----PLL  162 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa-----~~~  162 (299)
                      +|... ....|+.|..|..+...+|.+..+.       +....|+|++|+.++.+  .++++|++++++.+.     ++.
T Consensus        80 ~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~  151 (345)
T cd08287          80 FVIAP-FAISDGTCPFCRAGFTTSCVHGGFW-------GAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALS  151 (345)
T ss_pred             EEEec-cccCCCCChhhhCcCcccCCCCCcc-------cCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhh
Confidence            99763 3457999999999999999975432       23466999999999975  899999999882211     233


Q ss_pred             hhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---H
Q 022313          163 CAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---M  238 (299)
Q Consensus       163 ~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~  238 (299)
                      +.+.++|++++. ..++++++|+|.|+|++|++++|+|+..|++ ++++++++++.+.+ +++|+++++++++.+.   +
T Consensus       152 ~~~~~a~~~~~~-~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~ga~~v~~~~~~~~~~~i  229 (345)
T cd08287         152 DVMGTGHHAAVS-AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALA-REFGATDIVAERGEEAVARV  229 (345)
T ss_pred             cHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCceEecCCcccHHHHH
Confidence            678889998864 4558999999988899999999999999995 77777776666655 7899999998876433   3


Q ss_pred             HHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          239 KALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       239 ~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+..  .++|+++|++|+...+..++++++++|+++.+|.. ....+++...+.+++++.+.
T Consensus       230 ~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  291 (345)
T cd08287         230 RELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGG  291 (345)
T ss_pred             HHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEe
Confidence            3332  47999999999876799999999999999999877 45566766677899988764

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=4.7e-33  Score=253.15  Aligned_cols=270  Identities=23%  Similarity=0.386  Sum_probs=215.9

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCcccCCEEEEe
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG   94 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~   94 (299)
                      .++.+++++.+.|++.++||+||++++++|++|++.+.+...   ....|.++|||++|+|+++|+++.+|++||+|...
T Consensus        25 ~~~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  104 (364)
T PLN02702         25 GVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALE  104 (364)
T ss_pred             cCCceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEc
Confidence            456788889999999999999999999999999988765321   12357789999999999999999999999999775


Q ss_pred             ccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhh
Q 022313           95 TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR  174 (299)
Q Consensus        95 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~  174 (299)
                      +. .+|+.|.+|..+.++.|+...+.  +.    ....|+|++|+.++.+.++++|+++++.+++.. .++.++|+++ .
T Consensus       105 ~~-~~~~~c~~c~~g~~~~c~~~~~~--~~----~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~  175 (364)
T PLN02702        105 PG-ISCWRCNLCKEGRYNLCPEMKFF--AT----PPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-R  175 (364)
T ss_pred             CC-CCCCCCcchhCcCcccCCCcccc--CC----CCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-H
Confidence            55 59999999999999999864321  10    123699999999999999999999999888752 3444577777 4


Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCC--CH---HHHHHh----cCC
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSS--DL---EQMKAL----GKS  244 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~--~~---~~~~~~----~~~  244 (299)
                      ...+.++++|+|+|+|++|++++++|+..|++ ++++++++++.+.+ +++|++.+++..  +.   +.+..+    .++
T Consensus       176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (364)
T PLN02702        176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVA-KQLGADEIVLVSTNIEDVESEVEEIQKAMGGG  254 (364)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEEecCcccccHHHHHHHHhhhcCCC
Confidence            44558999999999899999999999999995 66777776666665 789998877543  11   222222    357


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|++||++|+...+..++++++++|+++.+|.. ....+++..+..+++++.++
T Consensus       255 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~  308 (364)
T PLN02702        255 IDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGV  308 (364)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEe
Confidence            999999999766699999999999999999976 44455667788899999886

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=3.8e-33  Score=251.22  Aligned_cols=275  Identities=21%  Similarity=0.356  Sum_probs=222.7

Q ss_pred             CCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhc-cCCC--CCCCCccccccccEEEEEecCCCCCcccCCEEEE
Q 022313           17 DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTR-NKHG--DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGV   93 (299)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~-g~~~--~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~   93 (299)
                      .+++.+++.+.+.|+++++||+||+.++++|++|.+.+. +...  ....|.++|+|++|+|+++|+++.+|++||+|..
T Consensus         4 ~~~~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~   83 (339)
T cd08232           4 HAAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAV   83 (339)
T ss_pred             ccCCceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEE
Confidence            356789999999999999999999999999999987763 3221  1235678999999999999999999999999977


Q ss_pred             eccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhh
Q 022313           94 GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMM  173 (299)
Q Consensus        94 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~  173 (299)
                      .+. ++|+.|.+|..|...+|....+. +..... ....|+|++|+.++.+.++++|+++++++++. ..++.++|+++.
T Consensus        84 ~~~-~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~-~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~  159 (339)
T cd08232          84 NPS-RPCGTCDYCRAGRPNLCLNMRFL-GSAMRF-PHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVN  159 (339)
T ss_pred             ccC-CcCCCChHHhCcCcccCccccce-eecccc-CCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHH
Confidence            644 58999999999999999974321 100000 12469999999999999999999999998875 568889999998


Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh---cCCccEEE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL---GKSLDFII  249 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~---~~~~d~v~  249 (299)
                      ....+ ++++|||.|+|.+|++++|+|+..|+ +++++++++++.+.+ +++|.+++++.++.. +.+.   .+++|+++
T Consensus       160 ~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~-~~~g~~~vi~~~~~~-~~~~~~~~~~vd~vl  236 (339)
T cd08232         160 RAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVA-RAMGADETVNLARDP-LAAYAADKGDFDVVF  236 (339)
T ss_pred             hcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHcCCCEEEcCCchh-hhhhhccCCCccEEE
Confidence            87775 99999998889999999999999999 788888887777755 789999988876543 2222   24699999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      |+.++....+.++++|+++|+++.+|.. .....++..++.+++++.++.
T Consensus       237 d~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  286 (339)
T cd08232         237 EASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSF  286 (339)
T ss_pred             ECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEe
Confidence            9999765588999999999999999866 345555666677888887753

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=3.6e-33  Score=249.51  Aligned_cols=240  Identities=22%  Similarity=0.303  Sum_probs=206.5

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      .+++.+++.|.+.++||+|||+++++|++|++.+.|.++ ....|.++|||++|+|+++|+++.++++||+|...+    
T Consensus        15 ~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~----   90 (324)
T cd08292          15 VLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAP----   90 (324)
T ss_pred             eEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecc----
Confidence            478899999999999999999999999999998877654 334678999999999999999999999999997421    


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                                                     ..|+|++|+.++...++++|+++++++++.+++.+.++|+++.. ..++
T Consensus        91 -------------------------------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~  138 (324)
T cd08292          91 -------------------------------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVK  138 (324)
T ss_pred             -------------------------------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCC
Confidence                                           24899999999999999999999999999999899999998865 4569


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~g  253 (299)
                      ++++|||+|+ |.+|++++|+|+.+|++++++++++++.+.+ +++|.+++++.++.+.   +.+..  +++|++||++|
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  217 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL-RALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVG  217 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCC
Confidence            9999999987 9999999999999999999999999888888 4689999888776433   33333  57999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.. ...++++++++|+++.+|..  ...++++..++.+++++.++.
T Consensus       218 ~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  263 (324)
T cd08292         218 GKL-AGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFW  263 (324)
T ss_pred             Chh-HHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEE
Confidence            875 88999999999999999976  345667777778999988763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=8.6e-33  Score=252.35  Aligned_cols=279  Identities=23%  Similarity=0.250  Sum_probs=220.7

Q ss_pred             EEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           12 GWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      ++.+ ..++.+++++++.|++ .++||+|||+++++|++|++.+.|.++ ...|.++|||++|+|+++|+++..+++||+
T Consensus         3 ~~~~-~~~~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (375)
T cd08282           3 AVVY-GGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVGDR   80 (375)
T ss_pred             eEEE-ecCCceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCCCE
Confidence            4444 3567899999999996 799999999999999999999888765 346889999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCcccccccccccccc---CCCCccCCcceeeEEeecc--eEEEcCCCCCcc---cccccc
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID---ADGTITKGGYSSYIVVHER--YCYKIANDYPLA---LAAPLL  162 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~---~aa~~~  162 (299)
                      |...+ ..+|+.|.+|..++...|.+....+.+..   .......|+|++|+.++.+  .++++|+++++.   +++.+.
T Consensus        81 V~~~~-~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~  159 (375)
T cd08282          81 VVVPF-NVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLS  159 (375)
T ss_pred             EEEeC-CCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhheeeec
Confidence            97654 45899999999999999986432211100   0011235899999999976  899999999998   567888


Q ss_pred             hhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---H
Q 022313          163 CAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---M  238 (299)
Q Consensus       163 ~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~  238 (299)
                      +.+.++|+++ ....++++++|+|.|+|++|++++|+|+..|+ +++++++++++.+.+ +++|++ .++..+.+.   +
T Consensus       160 ~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~-~~~g~~-~v~~~~~~~~~~i  236 (375)
T cd08282         160 DIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLA-ESIGAI-PIDFSDGDPVEQI  236 (375)
T ss_pred             chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCe-EeccCcccHHHHH
Confidence            8999999998 45566899999999889999999999999998 798888887777766 689984 456554332   2


Q ss_pred             HHh-cCCccEEEEcCCCch-----------hHHHHHHhcccCcEEEEEcCC-C-------------ceeeChhhhhcCCe
Q 022313          239 KAL-GKSLDFIIDTASGDH-----------PFDAYMSLLKVAGVYVLVGFP-S-------------KVKFSPASLNIGNA  292 (299)
Q Consensus       239 ~~~-~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~G~~v~~g~~-~-------------~~~~~~~~l~~~~~  292 (299)
                      .++ .+++|+++|++|+..           .+..++++++++|+++.+|.. .             ...+++..++.++.
T Consensus       237 ~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (375)
T cd08282         237 LGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGL  316 (375)
T ss_pred             HHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCc
Confidence            333 257999999999762           478899999999999988864 1             13456666777777


Q ss_pred             eeee
Q 022313          293 PLFR  296 (299)
Q Consensus       293 ~~~g  296 (299)
                      .+.+
T Consensus       317 ~~~~  320 (375)
T cd08282         317 SFGT  320 (375)
T ss_pred             EEEE
Confidence            6644

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=5e-33  Score=250.87  Aligned_cols=276  Identities=25%  Similarity=0.328  Sum_probs=223.7

Q ss_pred             EEeeeCCCCcccceeeecCCCC-CCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           12 GWAARDPSGVLSPYSFNRRAVG-SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~-~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      ++.+. +++.+++++++.|++. ++||+|+++++++|+.|.+...|.+. ...|.++|+|++|+|+++|+++.++++||+
T Consensus         3 a~~~~-~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (344)
T cd08284           3 AVVFK-GPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVGDR   80 (344)
T ss_pred             eEEEe-cCCCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCCCE
Confidence            55553 4567999999999985 99999999999999999988877664 344778999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcccccccchhhHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |...+. .+|+.|.+|..+.+.+|....+.  |... ....+|+|++|+.++++  .++++|+++++++++.+++++.|+
T Consensus        81 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta  156 (344)
T cd08284          81 VVSPFT-IACGECFYCRRGQSGRCAKGGLF--GYAG-SPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTG  156 (344)
T ss_pred             EEEccc-CCCCCChHHhCcCcccCCCCccc--cccc-cCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHH
Confidence            987665 48999999999999999865321  1000 01236899999999965  999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCH---HHHHHhc--
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDL---EQMKALG--  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~--  242 (299)
                      |+++.. ..+.++++|+|+|+|.+|++++++|+..|+ +++++++++++.+.+ +++|++. ++.+..   ..+.++.  
T Consensus       157 ~~~~~~-~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~l~~~~~~  233 (344)
T cd08284         157 YFGAKR-AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERA-AALGAEP-INFEDAEPVERVREATEG  233 (344)
T ss_pred             HhhhHh-cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH-HHhCCeE-EecCCcCHHHHHHHHhCC
Confidence            999976 455899999999889999999999999997 899987777777666 6799753 444432   2233332  


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeee
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g  296 (299)
                      +++|++||++++......++++++++|+++.+|..  ....++...++.+++++.+
T Consensus       234 ~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  289 (344)
T cd08284         234 RGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRF  289 (344)
T ss_pred             CCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEE
Confidence            57999999999866689999999999999999977  3444556666777877754

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-32  Score=248.29  Aligned_cols=273  Identities=26%  Similarity=0.424  Sum_probs=223.5

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++... .++.+++.+++.|++.++|++|+|.++++|+.|...+.+..+....|.++|+|++|+|+.+|+++++|++||+
T Consensus         2 ~a~~~~-~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~   80 (337)
T cd08261           2 KALVCE-KPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGDR   80 (337)
T ss_pred             eEEEEe-CCCceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCCE
Confidence            344443 3467889999999999999999999999999999888776654455778999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |...+. .+|+.|..|+.++++.|......       +....|+|++|+.++++ ++++|+++++++++.+ ..+.++++
T Consensus        81 V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~  150 (337)
T cd08261          81 VVVDPY-ISCGECYACRKGRPNCCENLQVL-------GVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAH  150 (337)
T ss_pred             EEECCC-CCCCCChhhhCcCcccCCCCCee-------eecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHH
Confidence            976544 48999999999999999533211       11235899999999999 9999999999998876 56778888


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc--CCc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG--KSL  245 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~--~~~  245 (299)
                      ++ ....++++++|||+|+|.+|++++|+|+..|++|+++++++++.+.+ +++|++++++..+.+   .+.+..  +++
T Consensus       151 ~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~v  228 (337)
T cd08261         151 AV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFA-RELGADDTINVGDEDVAARLRELTDGEGA  228 (337)
T ss_pred             HH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHH-HHhCCCEEecCcccCHHHHHHHHhCCCCC
Confidence            87 45566999999999889999999999999999999999988888877 789999998877543   233332  569


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                      |+++|+.|+......++++++++|+++.+|.. ....++...+..+++++.+
T Consensus       229 d~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~  280 (337)
T cd08261         229 DVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILG  280 (337)
T ss_pred             CEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEE
Confidence            99999998866689999999999999999877 4455666666667777665

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=9e-33  Score=247.96  Aligned_cols=271  Identities=24%  Similarity=0.368  Sum_probs=226.1

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEecc
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY   96 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   96 (299)
                      .++.+++.+.+.|++.+++|+|++.++++|++|++.+.|... ....|.++|||++|+|+.+|+++..|++||+|.+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~   90 (342)
T cd08266          11 GPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPG   90 (342)
T ss_pred             CccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEccc
Confidence            445677778888889999999999999999999988877543 2345778999999999999999999999999987655


Q ss_pred             ccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhcc
Q 022313           97 VNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK  176 (299)
Q Consensus        97 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~  176 (299)
                      . +|+.|.+|..+.++.|++..+  .     |....|++++|+.++.+.++++|+++++++++.++.++.++|+++....
T Consensus        91 ~-~~~~~~~~~~~~~~~~~~~~~--~-----g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~  162 (342)
T cd08266          91 I-SCGRCEYCLAGRENLCAQYGI--L-----GEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRA  162 (342)
T ss_pred             c-ccccchhhccccccccccccc--c-----ccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhc
Confidence            4 899999999999999997532  1     3335689999999999999999999999999999999999999987766


Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHH---h--cCCccEEEE
Q 022313          177 MNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA---L--GKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~--~~~~d~v~d  250 (299)
                      .+.++++++|+|+ +.+|++++++++..|++++++++++++.+.+ +.++.+.+++..+.+....   .  .+++|++++
T Consensus       163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  241 (342)
T cd08266         163 RLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KELGADYVIDYRKEDFVREVRELTGKRGVDVVVE  241 (342)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEE
Confidence            7789999999998 7999999999999999999999998888877 5788777777665433222   2  257999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++|... +...+++++++|+++.+|..  ....++....+.+++++.++.
T Consensus       242 ~~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (342)
T cd08266         242 HVGAAT-WEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGST  290 (342)
T ss_pred             CCcHHH-HHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEe
Confidence            999865 88999999999999999877  334455555677888887753

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=6.3e-33  Score=250.29  Aligned_cols=270  Identities=26%  Similarity=0.397  Sum_probs=220.6

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccC-CC--CCCCCccccccccEEEEEecCCCCCcccCCEEEEe
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNK-HG--DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG   94 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~-~~--~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~   94 (299)
                      ++..+++.+.+.|.+.++||+|||.++++|+.|.+.+.+. .+  ....|.++|+|++|+|+++|+++.+|++||+|.+.
T Consensus         6 ~~~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   85 (343)
T cd05285           6 GPGDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIE   85 (343)
T ss_pred             cCCceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEEc
Confidence            4467889999999999999999999999999998876422 11  12356789999999999999999999999999876


Q ss_pred             ccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhh
Q 022313           95 TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR  174 (299)
Q Consensus        95 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~  174 (299)
                      +. .+|+.|.+|+.+.+..|++..+.  +    .....|+|++|+.++++.++++|+++++.+++.+ .++.++|+++ .
T Consensus        86 ~~-~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~  156 (343)
T cd05285          86 PG-VPCRTCEFCKSGRYNLCPDMRFA--A----TPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-R  156 (343)
T ss_pred             cc-cCCCCChhHhCcCcccCcCcccc--c----cccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-H
Confidence            55 49999999999999999864221  0    0123589999999999999999999999998876 5778888887 4


Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH------HHHHhc--CCc
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE------QMKALG--KSL  245 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~------~~~~~~--~~~  245 (299)
                      ...++++++|+|.|+|++|++++|+|+..|++ |+++++++++.+.+ +++|++++++.++..      .+.+..  +++
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA-KELGATHTVNVRTEDTPESAEKIAELLGGKGP  235 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence            55569999999998899999999999999997 88888888887777 678999998876533      233332  569


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      |+++|+.|+......++++++++|+++.+|.. ....+++..+..+++++.++
T Consensus       236 d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  288 (343)
T cd05285         236 DVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGV  288 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEe
Confidence            99999999875589999999999999999976 44455666677788887775

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=2e-32  Score=246.82  Aligned_cols=275  Identities=25%  Similarity=0.414  Sum_probs=225.1

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. +.+.+.+++.+.|+++++||+||+.++++|+.|...+.+.+. ...|.++|+|++|+|+.+|+++..|++||+
T Consensus         2 ~a~~~~-~~~~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~   79 (343)
T cd08236           2 KALVLT-GPGDLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGDR   79 (343)
T ss_pred             eeEEEe-cCCceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCCE
Confidence            344543 445788899999999999999999999999999988777552 345778999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |...+.. .|+.|.+|..+.+..|+.....       |....|+|++|+.++++.++++|+++++.+++.+ ..+.++|+
T Consensus        80 V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~  150 (343)
T cd08236          80 VAVNPLL-PCGKCEYCKKGEYSLCSNYDYI-------GSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALH  150 (343)
T ss_pred             EEEcCCC-CCCCChhHHCcChhhCCCcceE-------ecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHH
Confidence            9775554 7899999999999999875321       2235699999999999999999999999998877 57789999


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH--HHHHhc--CCc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE--QMKALG--KSL  245 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~--~~~  245 (299)
                      ++.. ..++++++|+|+|+|.+|++++|+|+..|++ ++++++++++.+.+ +++|.+.+++.++..  .+....  +++
T Consensus       151 ~l~~-~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~  228 (343)
T cd08236         151 AVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA-RELGADDTINPKEEDVEKVRELTEGRGA  228 (343)
T ss_pred             HHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEecCccccHHHHHHHhCCCCC
Confidence            9874 4568999999998899999999999999996 99999888888777 689998888876543  222222  469


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc---eeeChhhhhcCCeeeeeec
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK---VKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~---~~~~~~~l~~~~~~~~g~~  298 (299)
                      |+++|++|+......++++++++|+++.+|.. ..   ...++..++.+++++.|+.
T Consensus       229 d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (343)
T cd08236         229 DLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSW  285 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEe
Confidence            99999998766689999999999999999977 33   2233445567888888763

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.7e-32  Score=243.27  Aligned_cols=263  Identities=24%  Similarity=0.285  Sum_probs=206.0

Q ss_pred             EEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-----------CCCCCccccccccEEEEEecC
Q 022313           12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-----------DSKYPLVPGHEIVGIVKEVGH   80 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-----------~~~~p~~lG~e~~G~V~~vG~   80 (299)
                      ++.+..+  .+++++.+.|++.++||+|++.++++|+.|++.+.|...           ....|.++|+|++|+|+++|+
T Consensus         3 a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08262           3 AAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGP   80 (341)
T ss_pred             eEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCC
Confidence            4444333  788899999999999999999999999999988877321           123477899999999999999


Q ss_pred             CCCC-cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccc
Q 022313           81 NVSR-FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAA  159 (299)
Q Consensus        81 ~v~~-~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa  159 (299)
                      +++. |++||+|+..+. ..|+.|..|..+..                 ....|+|++|+.++.+.++++|+++++++++
T Consensus        81 ~v~~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~-----------------~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~  142 (341)
T cd08262          81 GTERKLKVGTRVTSLPL-LLCGQGASCGIGLS-----------------PEAPGGYAEYMLLSEALLLRVPDGLSMEDAA  142 (341)
T ss_pred             CCcCCCCCCCEEEecCC-cCCCCChhhhCCCC-----------------cCCCCceeeeEEechHHeEECCCCCCHHHhh
Confidence            9987 999999987666 48999999943211                 0235899999999999999999999998876


Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH--
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE--  236 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--  236 (299)
                       ++.++.++|+++ ....++++++|||+|+|++|.+++|+|+..|++ ++++++++++.+.+ +++|++++++.++..  
T Consensus       143 -~~~~~~~a~~~~-~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~  219 (341)
T cd08262         143 -LTEPLAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALA-LAMGADIVVDPAADSPF  219 (341)
T ss_pred             -hhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHcCCcEEEcCCCcCHH
Confidence             667888999986 445569999999998899999999999999996 55556666666655 789998888866431  


Q ss_pred             -H---HHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          237 -Q---MKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       237 -~---~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                       .   +...  .+++|+++|++|+......++++++++|+++.+|.. ...++.+.....+++++.++
T Consensus       220 ~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  287 (341)
T cd08262         220 AAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFS  287 (341)
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEE
Confidence             1   1112  357999999999854588899999999999999977 33334444344577776643

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.8e-32  Score=245.57  Aligned_cols=258  Identities=25%  Similarity=0.366  Sum_probs=206.1

Q ss_pred             Cccccee-eecCCCCCCcEEEEEceeecccchhhhhccCCC--------------------CCCCCccccccccEEEEEe
Q 022313           20 GVLSPYS-FNRRAVGSDDVSITITHCGVCYADVIWTRNKHG--------------------DSKYPLVPGHEIVGIVKEV   78 (299)
Q Consensus        20 ~~~~~~~-~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~--------------------~~~~p~~lG~e~~G~V~~v   78 (299)
                      ..+.+.+ .+.|++.+++|+|||.++++|++|++.+.|.+.                    ....|.++|||++|+|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~v   92 (350)
T cd08274          13 DKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAV   92 (350)
T ss_pred             cceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEe
Confidence            3455543 467778999999999999999999988876542                    2346789999999999999


Q ss_pred             cCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc
Q 022313           79 GHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA  158 (299)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a  158 (299)
                      |+++.+|++||+|+..+.. +|+.|..|..     |.   +  .     |....|++++|+.++.+.++++|+++++.++
T Consensus        93 G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~-----~~---~--~-----~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~  156 (350)
T cd08274          93 GEGVDTARIGERVLVDPSI-RDPPEDDPAD-----ID---Y--I-----GSERDGGFAEYTVVPAENAYPVNSPLSDVEL  156 (350)
T ss_pred             CCCCCCCCCCCEEEEecCc-CCCCcccccc-----cc---c--c-----CCCCCccceEEEEecHHHceeCCCCCCHHHH
Confidence            9999999999999875443 5666654321     11   0  0     2223589999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      +.+++++.|+|+++. ...++++++|||+|+ |++|++++++|+..|++++++++++ +.+.+ +++|++.+++..+...
T Consensus       157 a~l~~~~~ta~~~~~-~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~-~~~g~~~~~~~~~~~~  233 (350)
T cd08274         157 ATFPCSYSTAENMLE-RAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAV-RALGADTVILRDAPLL  233 (350)
T ss_pred             HhcccHHHHHHHHHh-hcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHH-HhcCCeEEEeCCCccH
Confidence            999999999999984 445699999999998 9999999999999999998888765 66666 6899876665543221


Q ss_pred             --HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc-eeeChhhhhcCCeeeeee
Q 022313          238 --MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK-VKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       238 --~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~-~~~~~~~l~~~~~~~~g~  297 (299)
                        .... .+++|++||++|+.. ...++++++++|+++.+|.. .. .++++..++.+++++.|+
T Consensus       234 ~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  297 (350)
T cd08274         234 ADAKALGGEPVDVVADVVGGPL-FPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGS  297 (350)
T ss_pred             HHHHhhCCCCCcEEEecCCHHH-HHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEe
Confidence              1111 367999999999865 89999999999999999977 33 577778888899998875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-32  Score=245.30  Aligned_cols=253  Identities=21%  Similarity=0.219  Sum_probs=199.6

Q ss_pred             cccceEEeeeCCC------Cccccee---eecC-CCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccc--cccEE
Q 022313            7 SKDCLGWAARDPS------GVLSPYS---FNRR-AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGH--EIVGI   74 (299)
Q Consensus         7 ~~~~~~~~~~~~~------~~~~~~~---~~~p-~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~--e~~G~   74 (299)
                      ++..+.+.+...+      .+|++.+   .+.| ++.++|||||+.++++|+.|...+.+.......|.++|+  |++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~   85 (348)
T PLN03154          6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGV   85 (348)
T ss_pred             cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEE
Confidence            3344555553332      4466655   3555 457999999999999999987654432222235889998  88999


Q ss_pred             EEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce--EEE--cC
Q 022313           75 VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY--CYK--IA  150 (299)
Q Consensus        75 V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~--~~~--~p  150 (299)
                      |..+|++++.|++||+|..                                      .|+|+||..++.+.  +++  +|
T Consensus        86 v~~vg~~v~~~~~Gd~V~~--------------------------------------~~~~aey~~v~~~~~~~~~~~~P  127 (348)
T PLN03154         86 SKVVDSDDPNFKPGDLISG--------------------------------------ITGWEEYSLIRSSDNQLRKIQLQ  127 (348)
T ss_pred             EEEEecCCCCCCCCCEEEe--------------------------------------cCCcEEEEEEeccccceEEccCc
Confidence            9999999999999999952                                      26799999998753  544  48


Q ss_pred             CCCCcc-cccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE
Q 022313          151 NDYPLA-LAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       151 ~~~~~~-~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      ++++++ +++.+++++.|+|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+++++|+++
T Consensus       128 ~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~  207 (348)
T PLN03154        128 DDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDE  207 (348)
T ss_pred             CCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCE
Confidence            999986 688999999999999977667799999999998 999999999999999999999998888888754799999


Q ss_pred             EEeCCCH----HHHHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-ce-----eeChhhhhcCCeeeee
Q 022313          229 FVVSSDL----EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-KV-----KFSPASLNIGNAPLFR  296 (299)
Q Consensus       229 v~~~~~~----~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~-----~~~~~~l~~~~~~~~g  296 (299)
                      ++++++.    +.+.+. .+++|++||++|+. .+..++++++++|+++.+|.. . ..     .+++..++.|++++.|
T Consensus       208 vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g  286 (348)
T PLN03154        208 AFNYKEEPDLDAALKRYFPEGIDIYFDNVGGD-MLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQG  286 (348)
T ss_pred             EEECCCcccHHHHHHHHCCCCcEEEEECCCHH-HHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEE
Confidence            9987642    223333 35799999999986 489999999999999999976 2 21     2356678899999998


Q ss_pred             ec
Q 022313          297 FK  298 (299)
Q Consensus       297 ~~  298 (299)
                      |.
T Consensus       287 ~~  288 (348)
T PLN03154        287 FL  288 (348)
T ss_pred             EE
Confidence            74

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=9.9e-32  Score=242.31  Aligned_cols=274  Identities=24%  Similarity=0.349  Sum_probs=215.6

Q ss_pred             EEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC---CCCCCCccccccccEEEEEecCCCCCcccC
Q 022313           12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH---GDSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      ++.....+..+++.+.+.|.+.++|++||+.++++|+.|+..+.+..   .....|.++|+|++|+|+.+|+++..+++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   82 (341)
T cd05281           3 AIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVG   82 (341)
T ss_pred             ceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCC
Confidence            45554444568899999999999999999999999999988754321   122356689999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|...+.. +|+.|.+|..+.+++|....  +.+     ....|+|++|+.++.+.++++|++++++.+ .+...+.++
T Consensus        83 d~V~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a  153 (341)
T cd05281          83 DYVSAETHI-VCGKCYQCRTGNYHVCQNTK--ILG-----VDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNA  153 (341)
T ss_pred             CEEEECCcc-CCCCChHHHCcCcccCcccc--eEe-----ccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHH
Confidence            999876554 89999999999999997542  222     234689999999999999999999988544 566677888


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH--HHHh--cC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ--MKAL--GK  243 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~--~~  243 (299)
                      ++++. . ..+++++|+|.|+|.+|++++++|+..|. +|+++++++++...+ +++|.+++++.+..+.  +.+.  .+
T Consensus       154 ~~~~~-~-~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  230 (341)
T cd05281         154 VHTVL-A-GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELA-KKMGADVVINPREEDVVEVKSVTDGT  230 (341)
T ss_pred             HHHHH-h-cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCcceeeCcccccHHHHHHHcCCC
Confidence            87765 2 33789999998889999999999999999 788887666666655 6899988887654322  3333  25


Q ss_pred             CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChh-hhhcCCeeeeee
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPA-SLNIGNAPLFRF  297 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~-~l~~~~~~~~g~  297 (299)
                      ++|++||++|+......++++++++|+++.+|.. ....+++. .+..+++++.++
T Consensus       231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  286 (341)
T cd05281         231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGI  286 (341)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEE
Confidence            8999999999876688999999999999999876 33333333 366677777765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=4.1e-32  Score=245.07  Aligned_cols=221  Identities=17%  Similarity=0.147  Sum_probs=181.8

Q ss_pred             CCcccceeeecCCCC-CCcEEEEEceeecccchhhhhc---cCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEe
Q 022313           19 SGVLSPYSFNRRAVG-SDDVSITITHCGVCYADVIWTR---NKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG   94 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~-~~evlv~v~~~~i~~~D~~~~~---g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~   94 (299)
                      ++.+++.+.+.|++. ++||||||+++++|+.|.....   +.....++|.++|||++|+|+++|+++++|++||+|.. 
T Consensus        20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~-   98 (345)
T cd08293          20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS-   98 (345)
T ss_pred             ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe-
Confidence            456778899999875 9999999999999998853332   11111345788999999999999999999999999962 


Q ss_pred             ccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccc----ccccchhhHHHHH
Q 022313           95 TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLAL----AAPLLCAGITVYT  170 (299)
Q Consensus        95 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~----aa~~~~~~~ta~~  170 (299)
                           |                               .++|+||+.++++.++++|+++++.+    +++++.++.|+|+
T Consensus        99 -----~-------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~  142 (345)
T cd08293          99 -----F-------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALI  142 (345)
T ss_pred             -----c-------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHH
Confidence                 1                               15699999999999999999865432    4567778999999


Q ss_pred             HhhhccCCCCC--CEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc-
Q 022313          171 PMMRHKMNQPG--KSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG-  242 (299)
Q Consensus       171 al~~~~~~~~g--~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~-  242 (299)
                      ++.....++++  ++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.+++++|+++++++.+.+   .+.++. 
T Consensus       143 al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~  222 (345)
T cd08293         143 GIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCP  222 (345)
T ss_pred             HHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCC
Confidence            98776666776  99999998 9999999999999999 8999999998888886569999999877533   233333 


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++|++||++|+.. ...++++++++|+++.+|..
T Consensus       223 ~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~  256 (345)
T cd08293         223 EGVDVYFDNVGGEI-SDTVISQMNENSHIILCGQI  256 (345)
T ss_pred             CCceEEEECCCcHH-HHHHHHHhccCCEEEEEeee
Confidence            68999999999976 79999999999999999854

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=6.6e-32  Score=243.18  Aligned_cols=241  Identities=21%  Similarity=0.224  Sum_probs=197.4

Q ss_pred             CCcccceeeec----CCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccc--cEEEEEecCCCCCcccCCEE
Q 022313           19 SGVLSPYSFNR----RAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEI--VGIVKEVGHNVSRFKVGDHV   91 (299)
Q Consensus        19 ~~~~~~~~~~~----p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~--~G~V~~vG~~v~~~~~Gd~V   91 (299)
                      ++.|++.+.+.    |+|+++||||||+++++|+.|.+.+.|.... ...|.++|++.  .|.+..+|+.+..|++||+|
T Consensus        18 ~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V   97 (338)
T cd08295          18 ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLV   97 (338)
T ss_pred             ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEE
Confidence            45688888888    8899999999999999999999888775432 34578899754  45666678888899999999


Q ss_pred             EEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeec-ceEEEcC-CCCCcc-cccccchhhHHH
Q 022313           92 GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE-RYCYKIA-NDYPLA-LAAPLLCAGITV  168 (299)
Q Consensus        92 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~-~~~~~~p-~~~~~~-~aa~~~~~~~ta  168 (299)
                      ..                                      .|+|+||+.+|+ ..++++| +++++. +++++++++.|+
T Consensus        98 ~~--------------------------------------~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA  139 (338)
T cd08295          98 WG--------------------------------------FTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTA  139 (338)
T ss_pred             Ee--------------------------------------cCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHH
Confidence            52                                      268999999999 7999995 578886 788999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH-H---HHHHh-c
Q 022313          169 YTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL-E---QMKAL-G  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-~---~~~~~-~  242 (299)
                      |+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+++++|+++++++.+. +   .+.+. .
T Consensus       140 ~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~  219 (338)
T cd08295         140 YAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFP  219 (338)
T ss_pred             HHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCC
Confidence            999977777799999999998 9999999999999999999999999888888544999999986432 2   22332 3


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-ce-----eeChhhhhcCCeeeeeec
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-KV-----KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~-----~~~~~~l~~~~~~~~g~~  298 (299)
                      +++|++||++|+.. +..++++++++|+++.+|.. . ..     .+++..++.+++++.||.
T Consensus       220 ~gvd~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  281 (338)
T cd08295         220 NGIDIYFDNVGGKM-LDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFL  281 (338)
T ss_pred             CCcEEEEECCCHHH-HHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEE
Confidence            68999999999854 89999999999999999976 2 11     134566778888888853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.2e-31  Score=232.89  Aligned_cols=250  Identities=30%  Similarity=0.439  Sum_probs=210.4

Q ss_pred             cEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccc
Q 022313           36 DVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHC  114 (299)
Q Consensus        36 evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~  114 (299)
                      ||+|+|.++++|+.|++.+.|..+ ....|.++|||++|+|+++|+++..|++||+|...+. ..|+.|.+|..    .|
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~----~~   75 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPN-LGCGTCELCRE----LC   75 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCC-CCCCCCHHHHh----hC
Confidence            689999999999999998887664 3456788999999999999999999999999987655 48999999997    66


Q ss_pred             cccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHH
Q 022313          115 ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGH  194 (299)
Q Consensus       115 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~  194 (299)
                      +...+.       +....|+|++|+.++.+.++++|+++++++++.+++++.++|+++.....++++++|||+|+|++|+
T Consensus        76 ~~~~~~-------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~  148 (271)
T cd05188          76 PGGGIL-------GEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGL  148 (271)
T ss_pred             CCCCEe-------ccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHH
Confidence            655432       3345799999999999999999999999999999999999999998888778999999999966999


Q ss_pred             HHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh----cCCccEEEEcCCCchhHHHHHHhcccCcE
Q 022313          195 MAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL----GKSLDFIIDTASGDHPFDAYMSLLKVAGV  270 (299)
Q Consensus       195 ~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----~~~~d~v~d~~g~~~~~~~~~~~l~~~G~  270 (299)
                      +++++++..|.+|+++++++++.+.+ +++|.+++++..+.+....+    .+++|++++++++......++++++++|+
T Consensus       149 ~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~  227 (271)
T cd05188         149 LAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGR  227 (271)
T ss_pred             HHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence            99999999999999999998888877 67888888876654333222    36899999999984458999999999999


Q ss_pred             EEEEcCC-Cce-eeChhhhhcCCeeeeeec
Q 022313          271 YVLVGFP-SKV-KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       271 ~v~~g~~-~~~-~~~~~~l~~~~~~~~g~~  298 (299)
                      ++.+|.. ... ......++.+++++.|+.
T Consensus       228 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (271)
T cd05188         228 IVVVGGTSGGPPLDDLRRLLFKELTIIGST  257 (271)
T ss_pred             EEEEccCCCCCCcccHHHHHhcceEEEEee
Confidence            9999987 222 223556788999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=2.5e-31  Score=238.74  Aligned_cols=274  Identities=27%  Similarity=0.428  Sum_probs=223.8

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. .++.+++.+++.|++.++||+||++++++|+.|.....|.++. .+|.++|+|++|+|+.+|+++.++++||+
T Consensus         2 ~a~~~~-~~~~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~   79 (334)
T cd08234           2 KALVYE-GPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGDR   79 (334)
T ss_pred             eeEEec-CCCceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCCE
Confidence            355553 4567899999999999999999999999999999988886652 36788999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      |...+.. .|+.|.+|..+++..|......       |....|+|++|+.++.+.++++|+++++.+++.+ ..+.++++
T Consensus        80 V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~  150 (334)
T cd08234          80 VAVDPNI-YCGECFYCRRGRPNLCENLTAV-------GVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVH  150 (334)
T ss_pred             EEEcCCc-CCCCCccccCcChhhCCCccee-------ccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHH
Confidence            9765543 6999999988888877765311       1124689999999999999999999999988766 67788888


Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH--HHh-cCCcc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQM--KAL-GKSLD  246 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~~-~~~~d  246 (299)
                      ++ ....++++++|+|+|+|.+|.+++++|+..|++ ++++++++++.+.+ +++|.+.+++..+.+..  ... .+++|
T Consensus       151 ~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~vd  228 (334)
T cd08234         151 GL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA-KKLGATETVDPSREDPEAQKEDNPYGFD  228 (334)
T ss_pred             HH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCeEEecCCCCCHHHHHHhcCCCCc
Confidence            88 445569999999998899999999999999997 88888888888877 68898888876643221  122 36799


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +++|+++.......++++++++|+++.+|..   ...+++...++.+++++.++
T Consensus       229 ~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  282 (334)
T cd08234         229 VVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGS  282 (334)
T ss_pred             EEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEe
Confidence            9999998766688999999999999999876   24455566666678887765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=6.3e-32  Score=242.03  Aligned_cols=235  Identities=16%  Similarity=0.159  Sum_probs=192.8

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      .++.+++.+.+.|+++++||||||+++++|+.+.   .|.+.....|.++|.|++|+|+++|+   .|++||+|..    
T Consensus        15 ~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~----   84 (325)
T TIGR02825        15 TDSDFELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLA----   84 (325)
T ss_pred             CCCceEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEE----
Confidence            4677888999999999999999999999999654   34333234578999999999999874   5999999962    


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEc----CCCCCcccc-cccchhhHHHHHHh
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI----ANDYPLALA-APLLCAGITVYTPM  172 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~----p~~~~~~~a-a~~~~~~~ta~~al  172 (299)
                                                        .++|++|+.++.+.++++    |++++++++ +++++++.|+|+++
T Consensus        85 ----------------------------------~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l  130 (325)
T TIGR02825        85 ----------------------------------SPGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGL  130 (325)
T ss_pred             ----------------------------------ecCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHH
Confidence                                              146899999998888777    899999987 68899999999998


Q ss_pred             hhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH----HHHHh-cCCcc
Q 022313          173 MRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE----QMKAL-GKSLD  246 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~~-~~~~d  246 (299)
                      .....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++.+    .+... .+++|
T Consensus       131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~gvd  209 (325)
T TIGR02825       131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKLGFDVAFNYKTVKSLEETLKKASPDGYD  209 (325)
T ss_pred             HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEeccccccHHHHHHHhCCCCeE
Confidence            77777799999999996 9999999999999999999999998888888 689999999877532    22223 25799


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc---eee----ChhhhhcCCeeeeeec
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK---VKF----SPASLNIGNAPLFRFK  298 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~---~~~----~~~~l~~~~~~~~g~~  298 (299)
                      ++||++|+.. +..++++++++|+++.+|.. ..   ..+    ....+..+++++.+|.
T Consensus       210 vv~d~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  268 (325)
T TIGR02825       210 CYFDNVGGEF-SNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFI  268 (325)
T ss_pred             EEEECCCHHH-HHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEE
Confidence            9999999876 89999999999999999975 11   112    2345667888888764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=3.4e-31  Score=238.74  Aligned_cols=269  Identities=24%  Similarity=0.333  Sum_probs=215.0

Q ss_pred             CCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC---CCCCCCccccccccEEEEEecCCCCCcccCCEEEE
Q 022313           17 DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH---GDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGV   93 (299)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~---~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~   93 (299)
                      ++...+++.+.+.|.+.++||+||+.++++|+.|...+.+..   ...+.|.++|+|++|+|+++|+++.+|++||+|..
T Consensus         6 ~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   85 (340)
T TIGR00692         6 KPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSV   85 (340)
T ss_pred             cCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEE
Confidence            355668889999999999999999999999999988765431   12234668999999999999999999999999976


Q ss_pred             eccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhh
Q 022313           94 GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMM  173 (299)
Q Consensus        94 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~  173 (299)
                      .+. +.|+.|..|..+.+..|+...+.  +.     ...|+|++|+.++++.++++|++++++.+ +++..+.++++++.
T Consensus        86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~~  156 (340)
T TIGR00692        86 ETH-IVCGKCYACRRGQYHVCQNTKIF--GV-----DTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTVL  156 (340)
T ss_pred             CCc-CCCCCChhhhCcChhhCcCcceE--ee-----cCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHHH
Confidence            554 48999999999999999986332  11     24589999999999999999999998654 56778888888762


Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh--cCCccE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL--GKSLDF  247 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~--~~~~d~  247 (299)
                        ..++++++|+|.|+|++|++++|+|+..|++ |+++.+++++.+.+ +++|.+.+++....+.   +.++  .+++|+
T Consensus       157 --~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~  233 (340)
T TIGR00692       157 --AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELA-KKMGATYVVNPFKEDVVKEVADLTDGEGVDV  233 (340)
T ss_pred             --ccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence              3347899999988899999999999999996 88886666666655 7899988887654332   3333  257999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChh-hhhcCCeeeeee
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPA-SLNIGNAPLFRF  297 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~-~l~~~~~~~~g~  297 (299)
                      ++|+.++.......+++++++|+++.+|.. ...++++. .++.+++++.++
T Consensus       234 vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  285 (340)
T TIGR00692       234 FLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGI  285 (340)
T ss_pred             EEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEE
Confidence            999999766688999999999999999976 43444444 566788888765

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.8e-31  Score=238.64  Aligned_cols=244  Identities=21%  Similarity=0.336  Sum_probs=200.1

Q ss_pred             CCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEecc
Q 022313           17 DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY   96 (299)
Q Consensus        17 ~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   96 (299)
                      +.++.++..+.|.|+++++||+|||+++++|+.|...+.+..+....|.++|+|++|+|+++|+++.+|++||+|.... 
T Consensus        12 ~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   90 (336)
T TIGR02817        12 TDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAG-   90 (336)
T ss_pred             CCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcC-
Confidence            3456788889999999999999999999999999988877654445678899999999999999999999999996311 


Q ss_pred             ccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhcc
Q 022313           97 VNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK  176 (299)
Q Consensus        97 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~  176 (299)
                                                     +....|+|++|+.++.+.++++|+++++++++.+++++.|+|+++....
T Consensus        91 -------------------------------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~  139 (336)
T TIGR02817        91 -------------------------------DIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRL  139 (336)
T ss_pred             -------------------------------CCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhc
Confidence                                           0013589999999999999999999999999999999999999987666


Q ss_pred             CCCC-----CCEEEEEcC-ChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHhc-CCcc
Q 022313          177 MNQP-----GKSLGVIGL-GGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKALG-KSLD  246 (299)
Q Consensus       177 ~~~~-----g~~vlI~G~-g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~-~~~d  246 (299)
                      .+++     +++|||+|+ |++|++++|+|+.. |++|+++++++++.+.+ +++|+++++++...  ..+.+.. +++|
T Consensus       140 ~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~vd  218 (336)
T TIGR02817       140 GINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWV-LELGAHHVIDHSKPLKAQLEKLGLEAVS  218 (336)
T ss_pred             CCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH-HHcCCCEEEECCCCHHHHHHHhcCCCCC
Confidence            6566     999999987 99999999999998 99999999998888888 68999999875431  2233333 5799


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeee
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF  295 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~  295 (299)
                      +++|++++......++++++++|+++.++..  ..+++..+..+++++.
T Consensus       219 ~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~--~~~~~~~~~~~~~~~~  265 (336)
T TIGR02817       219 YVFSLTHTDQHFKEIVELLAPQGRFALIDDP--AELDISPFKRKSISLH  265 (336)
T ss_pred             EEEEcCCcHHHHHHHHHHhccCCEEEEEccc--ccccchhhhhcceEEE
Confidence            9999987656689999999999999988643  2334444444545544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=2.7e-31  Score=239.31  Aligned_cols=252  Identities=23%  Similarity=0.233  Sum_probs=207.5

Q ss_pred             eEEeeeCCCC---cccceeeecCCCCC-CcEEEEEceeecccchhhhhccCCCCC-C----CCccccccccEEEEEecCC
Q 022313           11 LGWAARDPSG---VLSPYSFNRRAVGS-DDVSITITHCGVCYADVIWTRNKHGDS-K----YPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus        11 ~~~~~~~~~~---~~~~~~~~~p~~~~-~evlv~v~~~~i~~~D~~~~~g~~~~~-~----~p~~lG~e~~G~V~~vG~~   81 (299)
                      +++.+...+.   .+.+.+.+.|++.+ +||+||+.++++|++|...+.|..+.. .    .|.++|||++|+|+++|++
T Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~   81 (341)
T cd08290           2 KALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSG   81 (341)
T ss_pred             ceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCC
Confidence            3445543433   37889999998887 999999999999999999887765421 2    5678999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccccc
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPL  161 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  161 (299)
                      +..|++||+|....                                  ...|+|++|+.++++.++++|+++++++++.+
T Consensus        82 v~~~~~Gd~V~~~~----------------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~  127 (341)
T cd08290          82 VKSLKPGDWVIPLR----------------------------------PGLGTWRTHAVVPADDLIKVPNDVDPEQAATL  127 (341)
T ss_pred             CCCCCCCCEEEecC----------------------------------CCCccchheEeccHHHeEeCCCCCCHHHHHHh
Confidence            99999999997421                                  02489999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHhcCCCEEEeCCCH-
Q 022313          162 LCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST----SKKEEALSLLGADKFVVSSDL-  235 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~----~~~~~~~~~~g~~~v~~~~~~-  235 (299)
                      ++.+.|+|+++.....++++++|||+|+ |++|++++++|+..|++++++++++    ++.+.+ +++|++++++.+.. 
T Consensus       128 ~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  206 (341)
T cd08290         128 SVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERL-KALGADHVLTEEELR  206 (341)
T ss_pred             hccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHH-HhcCCCEEEeCcccc
Confidence            9999999999977667799999999987 9999999999999999999988876    556666 68999999877653 


Q ss_pred             --HH---HHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          236 --EQ---MKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       236 --~~---~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                        ..   +.... +++|+++|++|+.. ....+++++++|+++.+|..  ....+++..++.+++++.++.
T Consensus       207 ~~~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  276 (341)
T cd08290         207 SLLATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFW  276 (341)
T ss_pred             cccHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEe
Confidence              22   22222 37999999999876 77899999999999999866  344566666778898888753

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=6.1e-31  Score=235.67  Aligned_cols=232  Identities=17%  Similarity=0.189  Sum_probs=189.2

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      +.+++.+.+.|+|+++||+|||+++++|+.|.....+   ....|.++|+|++|+|++   .+..|++||+|..      
T Consensus        19 ~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~------   86 (329)
T cd08294          19 SDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KNSKFPVGTIVVA------   86 (329)
T ss_pred             cceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CCCCCCCCCEEEe------
Confidence            5578899999999999999999999999887542211   124588999999999996   4457999999962      


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc---eEEEcCCCCCc-----ccccccchhhHHHHHH
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER---YCYKIANDYPL-----ALAAPLLCAGITVYTP  171 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~---~~~~~p~~~~~-----~~aa~~~~~~~ta~~a  171 (299)
                                                      .++|++|+.++.+   .++++|++++.     ..++.+++++.|+|++
T Consensus        87 --------------------------------~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~a  134 (329)
T cd08294          87 --------------------------------SFGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFG  134 (329)
T ss_pred             --------------------------------eCCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHH
Confidence                                            1468899999999   99999999882     2234678899999999


Q ss_pred             hhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh-cCCcc
Q 022313          172 MMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL-GKSLD  246 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~-~~~~d  246 (299)
                      +.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++.+.   +.+. .+++|
T Consensus       135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l-~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd  213 (329)
T cd08294         135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL-KELGFDAVFNYKTVSLEEALKEAAPDGID  213 (329)
T ss_pred             HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence            977777799999999986 9999999999999999999999999888888 5799999998876433   3333 36799


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-c------eeeChhhhhcCCeeeeee
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-K------VKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~------~~~~~~~l~~~~~~~~g~  297 (299)
                      ++||++|+.. ...++++++++|+++.+|.. . .      .......++.+++++.+|
T Consensus       214 ~vld~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (329)
T cd08294         214 CYFDNVGGEF-SSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGF  271 (329)
T ss_pred             EEEECCCHHH-HHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEE
Confidence            9999999855 89999999999999999864 1 1      122344567788888886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.98  E-value=2e-30  Score=231.74  Aligned_cols=245  Identities=25%  Similarity=0.329  Sum_probs=201.7

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      .++++.+.+.|.+.++||+||+.++++|++|...+.|..+. ...|.++|||++|+|+++  +++.|++||+|.....  
T Consensus        13 ~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~~--   88 (325)
T cd05280          13 VSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTGY--   88 (325)
T ss_pred             CcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCCCCCEEEEccc--
Confidence            37899999999999999999999999999999988876532 235778999999999999  4567999999974210  


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCC
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN  178 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~  178 (299)
                                            +     .|....|+|++|+.++++.++++|+++++++++.+++.+.++|.++......
T Consensus        89 ----------------------~-----~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~  141 (325)
T cd05280          89 ----------------------D-----LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDN  141 (325)
T ss_pred             ----------------------c-----cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhc
Confidence                                  0     0222468999999999999999999999999999999999999988665432


Q ss_pred             --C-CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH--HHHHh-cCCccEEEEc
Q 022313          179 --Q-PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE--QMKAL-GKSLDFIIDT  251 (299)
Q Consensus       179 --~-~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~-~~~~d~v~d~  251 (299)
                        . ++++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|++++++.++..  ..+.. .+++|+++|+
T Consensus       142 ~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  220 (325)
T cd05280         142 GQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYL-KSLGASEVLDREDLLDESKKPLLKARWAGAIDT  220 (325)
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEEcchhHHHHHHHHhcCCCccEEEEC
Confidence              4 4579999998 9999999999999999999999999988888 689999988766532  12222 3579999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +++.. ...++++++++|+++.+|..  ....+++..++.+++++.+.
T Consensus       221 ~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (325)
T cd05280         221 VGGDV-LANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGI  267 (325)
T ss_pred             CchHH-HHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEE
Confidence            99865 99999999999999999977  33356666666788888874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.98  E-value=2.3e-30  Score=231.67  Aligned_cols=244  Identities=25%  Similarity=0.357  Sum_probs=198.2

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCC-CCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH-GDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~-~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      .+++++.+.|.+.++||+||+.++++|++|.....+.. .....|.++|||++|+|+++|  +.+|++||+|...+..  
T Consensus        14 ~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~~--   89 (326)
T cd08289          14 SVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSYD--   89 (326)
T ss_pred             eeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCCCCCEEEEcccc--
Confidence            57788999999999999999999999999986654221 122457889999999999964  5679999999753210  


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhcc---
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK---  176 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~---  176 (299)
                                                 .|....|+|++|+.++++.++++|+++++++++.+++.+.|+|.++....   
T Consensus        90 ---------------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~  142 (326)
T cd08289          90 ---------------------------LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENG  142 (326)
T ss_pred             ---------------------------cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence                                       02234699999999999999999999999999999999999998875432   


Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHh-cCCccEEEEcC
Q 022313          177 MNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKAL-GKSLDFIIDTA  252 (299)
Q Consensus       177 ~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~-~~~~d~v~d~~  252 (299)
                      ...++++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|++++++.++.  +.+.+. .+++|+++|++
T Consensus       143 ~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~  221 (326)
T cd08289         143 LTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL-KKLGAKEVIPREELQEESIKPLEKQRWAGAVDPV  221 (326)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HHcCCCEEEcchhHHHHHHHhhccCCcCEEEECC
Confidence            2345789999998 9999999999999999999999999998888 68999888877653  222223 35799999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      |+.. ...++++++++|+++.+|..  ...++++..++.+++++.++
T Consensus       222 g~~~-~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
T cd08289         222 GGKT-LAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGI  267 (326)
T ss_pred             cHHH-HHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEE
Confidence            9854 89999999999999999987  23445566777899998886

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=4.3e-30  Score=230.45  Aligned_cols=264  Identities=25%  Similarity=0.341  Sum_probs=214.3

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      .+.+++.+.+.|.++++|++|++.++++|++|++...|.++ ....|.++|||++|+|+++|+.+.++++||+|......
T Consensus        12 ~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~   91 (336)
T cd08276          12 LDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFP   91 (336)
T ss_pred             CcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEeccc
Confidence            36677888888888999999999999999999998877654 23467789999999999999999999999999764432


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                       .|+.+      .+..|...  .     ..|....|+|++|+.++.+.++++|+++++.+++.+.+.+.++|+++.....
T Consensus        92 -~~~~~------~~~~~~~~--~-----~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~  157 (336)
T cd08276          92 -NWLDG------PPTAEDEA--S-----ALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGP  157 (336)
T ss_pred             -ccccc------cccccccc--c-----ccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcC
Confidence             34332      22333221  1     1133457899999999999999999999999999999999999999887777


Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-H---HHHHHhc--CCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-L---EQMKALG--KSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~~--~~~d~v~d~  251 (299)
                      ++++++|+|+|+|++|++++++++..|++|+++++++++.+.+ +++|.+++++... .   ..+.+..  +++|+++|+
T Consensus       158 ~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  236 (336)
T cd08276         158 LKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERA-KALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEV  236 (336)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEEC
Confidence            7999999999889999999999999999999999998888888 4689998887654 2   2233333  589999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +++.. ...++++++++|+++.+|..  ....++...++.+++++.++.
T Consensus       237 ~~~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  284 (336)
T cd08276         237 GGPGT-LAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIA  284 (336)
T ss_pred             CChHH-HHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEe
Confidence            98765 88999999999999999987  233566677788999998763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.98  E-value=3.2e-30  Score=231.16  Aligned_cols=254  Identities=25%  Similarity=0.348  Sum_probs=207.5

Q ss_pred             cccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCc
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      |||+..+.-.+....+++.+.+.|++.++||+|||.++++|+.|.....+.++ ....|.++|||++|+|+++|+++..+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            34544444333334566777778888999999999999999999888877553 23346689999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||+|...                                   ...|+|++|+.++.+.++++|++++..+++.+.+++
T Consensus        81 ~~Gd~V~~~-----------------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~  125 (334)
T PTZ00354         81 KEGDRVMAL-----------------------------------LPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAF  125 (334)
T ss_pred             CCCCEEEEe-----------------------------------cCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHH
Confidence            999999631                                   124899999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH-H---HHH
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE-Q---MKA  240 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-~---~~~  240 (299)
                      .++|+++.....++++++|+|+|+ |.+|++++++|+..|++++++++++++.+.+ +++|.+++++....+ .   +..
T Consensus       126 ~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~  204 (334)
T PTZ00354        126 LTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC-KKLAAIILIRYPDEEGFAPKVKK  204 (334)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCChhHHHHHHHH
Confidence            999999887767799999999996 9999999999999999988889888888888 679998888876543 2   222


Q ss_pred             h--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCC--cee-eChhhhhcCCeeeeee
Q 022313          241 L--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS--KVK-FSPASLNIGNAPLFRF  297 (299)
Q Consensus       241 ~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~-~~~~~l~~~~~~~~g~  297 (299)
                      .  .+++|++++++++.. ...++++++++|+++.+|...  ... +++..++.+++++.+.
T Consensus       205 ~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (334)
T PTZ00354        205 LTGEKGVNLVLDCVGGSY-LSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFS  265 (334)
T ss_pred             HhCCCCceEEEECCchHH-HHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEee
Confidence            3  257999999998765 889999999999999999762  222 7777777777777763

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=5.5e-30  Score=228.81  Aligned_cols=244  Identities=23%  Similarity=0.303  Sum_probs=201.8

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCcccCCEEEEec
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT   95 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~   95 (299)
                      +..+++.+.+.|.+.++||+|++.++++|++|++...|..+   ....|.++|||++|+|+++|+++..+++||+|....
T Consensus        12 ~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~   91 (324)
T cd08244          12 PEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHT   91 (324)
T ss_pred             ccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence            34466667777778999999999999999999988877543   234567899999999999999999999999996421


Q ss_pred             cccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhc
Q 022313           96 YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRH  175 (299)
Q Consensus        96 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~  175 (299)
                      .                                 ...|+|++|+.++++.++++|+++++.+++.+++.+.|+|.. ...
T Consensus        92 ~---------------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~-~~~  137 (324)
T cd08244          92 G---------------------------------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL-LDL  137 (324)
T ss_pred             C---------------------------------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHH-HHh
Confidence            0                                 125899999999999999999999999999999999999644 444


Q ss_pred             cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEE
Q 022313          176 KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFII  249 (299)
Q Consensus       176 ~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~  249 (299)
                      ..++++++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|++.+++..+.+.   +.+..  +++|+++
T Consensus       138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl  216 (324)
T cd08244         138 ATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RALGADVAVDYTRPDWPDQVREALGGGGVTVVL  216 (324)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEecCCccHHHHHHHHcCCCCceEEE
Confidence            55699999999996 9999999999999999999999999888888 6899988887765433   22232  5799999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      |++|+.. ...++++++++|+++.+|..  ...++++..++.+++++.++.
T Consensus       217 ~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08244         217 DGVGGAI-GRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLL  266 (324)
T ss_pred             ECCChHh-HHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEee
Confidence            9999886 78999999999999999987  333566666778898888763

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.97  E-value=6.5e-30  Score=228.55  Aligned_cols=246  Identities=24%  Similarity=0.351  Sum_probs=201.9

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      +..+++++++.|.+.++||+||++++++|++|++.+.|.+.. ...|.++|||++|+|+.  .++..|++||+|...++.
T Consensus        11 ~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~   88 (323)
T TIGR02823        11 KVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTGYG   88 (323)
T ss_pred             CcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCCCCEEEEccCC
Confidence            346789999999999999999999999999999888776532 24578899999999998  556789999999753210


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                   .|....|++++|+.++++.++++|+++++.+++.+++.+.++|.+++....
T Consensus        89 -----------------------------~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~  139 (323)
T TIGR02823        89 -----------------------------LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALER  139 (323)
T ss_pred             -----------------------------CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhh
Confidence                                         012246899999999999999999999999999999999999887754332


Q ss_pred             --CCCCC-EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH-HHHh-cCCccEEEEc
Q 022313          178 --NQPGK-SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ-MKAL-GKSLDFIIDT  251 (299)
Q Consensus       178 --~~~g~-~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~-~~~~d~v~d~  251 (299)
                        +.+++ +|+|+|+ |.+|++++++|+..|++++++++++++.+.+ +++|++++++.++... +..+ .+++|+++|+
T Consensus       140 ~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~  218 (323)
T TIGR02823       140 NGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYL-KELGASEVIDREDLSPPGKPLEKERWAGAVDT  218 (323)
T ss_pred             cCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HhcCCcEEEccccHHHHHHHhcCCCceEEEEC
Confidence              58888 9999998 9999999999999999999998888888777 7899988887765432 3333 2469999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|+.. ...++++++++|+++.+|..  ...++++..++.+++++.++
T Consensus       219 ~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
T TIGR02823       219 VGGHT-LANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGI  265 (323)
T ss_pred             ccHHH-HHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEE
Confidence            99875 89999999999999999987  34445556676889998884

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.97  E-value=4e-30  Score=230.34  Aligned_cols=234  Identities=23%  Similarity=0.326  Sum_probs=198.8

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |+...+.-.+.++.+++.+++.|.+.++||+||+.++++|++|++...|.++....|.++|||++|+|+.+|+++.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (327)
T PRK10754          2 AKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIKV   81 (327)
T ss_pred             ceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCCC
Confidence            45555544444567889999999999999999999999999999888776654456778999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|....                                  ...|+|++|+.++.+.++++|+++++++++.+++.+.+
T Consensus        82 Gd~V~~~~----------------------------------~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~t  127 (327)
T PRK10754         82 GDRVVYAQ----------------------------------SALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLT  127 (327)
T ss_pred             CCEEEECC----------------------------------CCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHH
Confidence            99996310                                  12378999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh--
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL--  241 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~--  241 (299)
                      +|.++.....++++++|+|+|+ |.+|++++++|+..|++++.+++++++.+.+ +++|++++++.++.+.   +.+.  
T Consensus       128 a~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  206 (327)
T PRK10754        128 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRA-KKAGAWQVINYREENIVERVKEITG  206 (327)
T ss_pred             HHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEEcCCCCcHHHHHHHHcC
Confidence            9999877777799999999976 9999999999999999999999998888888 6899988887665332   3333  


Q ss_pred             cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+++|+++|++++.. ...++++++++|+++.+|..
T Consensus       207 ~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~  241 (327)
T PRK10754        207 GKKVRVVYDSVGKDT-WEASLDCLQRRGLMVSFGNA  241 (327)
T ss_pred             CCCeEEEEECCcHHH-HHHHHHHhccCCEEEEEccC
Confidence            257999999999865 88899999999999999876

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.97  E-value=1.3e-29  Score=226.28  Aligned_cols=240  Identities=23%  Similarity=0.302  Sum_probs=204.9

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      .+++++.+.|++.++||+||++++++|+.|...+.+.+. ....|.++|||++|+|+.+|+++..+++||+|...+    
T Consensus        13 ~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~----   88 (323)
T cd05282          13 VLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG----   88 (323)
T ss_pred             eEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC----
Confidence            567778888999999999999999999999988876653 234577899999999999999999999999997421    


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                                                     ..|+|++|+.++...++++|+++++.+++.+++.+.++|+++.....+.
T Consensus        89 -------------------------------~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~  137 (323)
T cd05282          89 -------------------------------GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLP  137 (323)
T ss_pred             -------------------------------CCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCC
Confidence                                           1488999999999999999999999999999999999999987777779


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHH---h--cCCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA---L--GKSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---~--~~~~d~v~d~~g  253 (299)
                      ++++|+|+|+ |.+|++++++|+.+|++++++++++++.+.+ +++|++++++..+......   .  .+++|+++|++|
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g  216 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVG  216 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-HhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCC
Confidence            9999999987 8999999999999999999999999888888 6899999988776433332   2  257999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC-C-ceeeChhhhhcCCeeeeee
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP-S-KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~-~-~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.. ...++++++++|+++.+|.. . ...+++..+..+++++.++
T Consensus       217 ~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  261 (323)
T cd05282         217 GES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGF  261 (323)
T ss_pred             CHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEE
Confidence            976 77889999999999999887 3 3456666666688888775

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.97  E-value=2.2e-29  Score=225.68  Aligned_cols=239  Identities=26%  Similarity=0.349  Sum_probs=199.6

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      ++.+++++.+.|.+.++|++|||.++++|+.|++...|.+. ....|.++|||++|+|+.+|+++.++++||+|...   
T Consensus        15 ~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~---   91 (329)
T cd08250          15 REATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATM---   91 (329)
T ss_pred             ccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEe---
Confidence            56788999999999999999999999999999988877654 24578899999999999999999999999999641   


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                       ..|+|++|+.++.+.++++|++  ..+++.+++++.++|+++.....
T Consensus        92 ---------------------------------~~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~  136 (329)
T cd08250          92 ---------------------------------SFGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGE  136 (329)
T ss_pred             ---------------------------------cCcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcC
Confidence                                             2489999999999999999997  35677899999999999987777


Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh-cCCccEEEEcC
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL-GKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~-~~~~d~v~d~~  252 (299)
                      ++++++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|.+.+++.++.+.   +... .+++|+++|++
T Consensus       137 ~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~  215 (329)
T cd08250         137 MKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL-KSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESV  215 (329)
T ss_pred             CCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH-HHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECC
Confidence            799999999996 9999999999999999999999988888888 6899888887665322   2222 36799999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCC-Cc-----------eeeChhhhhcCCeeeeeec
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFP-SK-----------VKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~-~~-----------~~~~~~~l~~~~~~~~g~~  298 (299)
                      |+.. ...++++++++|+++.+|.. ..           ..++ ...+.+++++.++.
T Consensus       216 g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  271 (329)
T cd08250         216 GGEM-FDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFF  271 (329)
T ss_pred             cHHH-HHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEE
Confidence            9854 89999999999999999876 21           1222 23466788887763

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=1.3e-29  Score=224.74  Aligned_cols=233  Identities=23%  Similarity=0.338  Sum_probs=196.5

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      +..+++.+.+.|.+.++||+||+.++++|+.|.+...+.    ..|.++|||++|+|+++|+++..|++||+|...    
T Consensus        11 ~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~----   82 (305)
T cd08270          11 PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVGARVVGL----   82 (305)
T ss_pred             CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEe----
Confidence            556777899999999999999999999999998876521    235689999999999999999999999999631    


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCC
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN  178 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~  178 (299)
                                                     ...|+|++|+.++.+.++++|+++++++++.+++.+.++|+++..... 
T Consensus        83 -------------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~-  130 (305)
T cd08270          83 -------------------------------GAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGP-  130 (305)
T ss_pred             -------------------------------cCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCC-
Confidence                                           125899999999999999999999999999999999999999988776 


Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      .++++|+|+|+ |++|++++++++..|++++.+++++++.+.+ +++|++..++...  .  ...+++|+++|++|+.. 
T Consensus       131 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~--~--~~~~~~d~vl~~~g~~~-  204 (305)
T cd08270         131 LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGL-RELGAAEVVVGGS--E--LSGAPVDLVVDSVGGPQ-  204 (305)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEeccc--c--ccCCCceEEEECCCcHH-
Confidence            46999999998 9999999999999999999999988888888 5699876654332  1  11257999999999875 


Q ss_pred             HHHHHHhcccCcEEEEEcCC--CceeeChhhhhc--CCeeeeee
Q 022313          258 FDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNI--GNAPLFRF  297 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~--~~~~~~g~  297 (299)
                      ...++++++++|+++.+|..  ....+++..+..  ++.++.++
T Consensus       205 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (305)
T cd08270         205 LARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTF  248 (305)
T ss_pred             HHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEE
Confidence            89999999999999999976  345566666655  68888775

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=2.8e-29  Score=223.52  Aligned_cols=245  Identities=24%  Similarity=0.317  Sum_probs=198.5

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      ..+++.+.+.|++.++||+||++++++|+.|++...+..+....|.++|||++|+|+++|.  ..+++||+|......  
T Consensus        13 ~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~~~--   88 (320)
T cd08243          13 EVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAMGG--   88 (320)
T ss_pred             cceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCCCCEEEEecCC--
Confidence            3566677777888999999999999999999998887665455678899999999999995  579999999743110  


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                                              .   +....|+|++|+.+++..++++|+++++++++.+++++.++|+++.....++
T Consensus        89 ------------------------~---~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~  141 (320)
T cd08243          89 ------------------------M---GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQ  141 (320)
T ss_pred             ------------------------C---CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCC
Confidence                                    0   1124589999999999999999999999999999999999999998877779


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC--HHHHHHhcCCccEEEEcCCCch
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      ++++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|++++++...  .+.+.+..+++|+++|++++..
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~~~~~~  220 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL-KELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGTAT  220 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEEecCccHHHHHHHhCCCceEEEECCChHH
Confidence            9999999998 9999999999999999999999998888888 6899988875432  1223333568999999999864


Q ss_pred             hHHHHHHhcccCcEEEEEcCC-Cc---eeeChhhhh--cCCeeeeee
Q 022313          257 PFDAYMSLLKVAGVYVLVGFP-SK---VKFSPASLN--IGNAPLFRF  297 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g~~-~~---~~~~~~~l~--~~~~~~~g~  297 (299)
                       +..++++++++|+++.+|.. ..   .......+.  .+++++.++
T Consensus       221 -~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (320)
T cd08243         221 -LKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGS  266 (320)
T ss_pred             -HHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEec
Confidence             89999999999999999975 11   112223333  567777665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.97  E-value=5.2e-29  Score=223.78  Aligned_cols=241  Identities=25%  Similarity=0.345  Sum_probs=199.0

Q ss_pred             ccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCC
Q 022313           22 LSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCR  101 (299)
Q Consensus        22 ~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~  101 (299)
                      +...+++.|++.++||+|++.++++|++|++.+.+.++....|.++|||++|+|+++|+++..|++||+|.....     
T Consensus        18 ~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-----   92 (336)
T cd08252          18 LIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGD-----   92 (336)
T ss_pred             eeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCC-----
Confidence            566678888889999999999999999999887776543445778999999999999999999999999963100     


Q ss_pred             CCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCC-
Q 022313          102 DCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP-  180 (299)
Q Consensus       102 ~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~-  180 (299)
                                                 ....|+|++|+.++.+.++++|+++++++++.+++.+.++|.++.....+.+ 
T Consensus        93 ---------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~  145 (336)
T cd08252          93 ---------------------------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISED  145 (336)
T ss_pred             ---------------------------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCC
Confidence                                       0135899999999999999999999999999999999999999866666566 


Q ss_pred             ----CCEEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHhc-CCccEEEEc
Q 022313          181 ----GKSLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKALG-KSLDFIIDT  251 (299)
Q Consensus       181 ----g~~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~-~~~d~v~d~  251 (299)
                          +++|+|+|+ |++|++++++|+..| ++|+++++++++.+.+ +++|++++++..+.  ..+.... +++|+++|+
T Consensus       146 ~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~  224 (336)
T cd08252         146 AENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWV-KELGADHVINHHQDLAEQLEALGIEPVDYIFCL  224 (336)
T ss_pred             cCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHH-HhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEc
Confidence                999999986 999999999999999 8999999998888888 68999998877641  2222233 579999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g  296 (299)
                      +++......++++++++|+++.+|... ..++...+..+++++.+
T Consensus       225 ~~~~~~~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~  268 (336)
T cd08252         225 TDTDQHWDAMAELIAPQGHICLIVDPQ-EPLDLGPLKSKSASFHW  268 (336)
T ss_pred             cCcHHHHHHHHHHhcCCCEEEEecCCC-CcccchhhhcccceEEE
Confidence            997656899999999999999998662 33444455567777765

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4.7e-29  Score=221.65  Aligned_cols=239  Identities=21%  Similarity=0.277  Sum_probs=195.9

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhh-ccCCCC--CCCCccccccccEEEEEecCCCCCcccCCEEEEe
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWT-RNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG   94 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~-~g~~~~--~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~   94 (299)
                      +++.+++.+++.|++.++||+||+.++++|++|.+.+ .|....  +..|.++|+|++|+|+.+|+++.++++||+|+..
T Consensus         3 ~~~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   82 (312)
T cd08269           3 GPGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGL   82 (312)
T ss_pred             CCCeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEe
Confidence            4567899999999999999999999999999998877 665421  2247789999999999999999999999999742


Q ss_pred             ccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccc-hhhHHHHHHhh
Q 022313           95 TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLL-CAGITVYTPMM  173 (299)
Q Consensus        95 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~-~~~~ta~~al~  173 (299)
                                                          ..|+|++|+.++.+.++++|+++  .. +.++ .++.++++++.
T Consensus        83 ------------------------------------~~g~~~~~~~v~~~~~~~lP~~~--~~-~~~~~~~~~~a~~~~~  123 (312)
T cd08269          83 ------------------------------------SGGAFAEYDLADADHAVPLPSLL--DG-QAFPGEPLGCALNVFR  123 (312)
T ss_pred             ------------------------------------cCCcceeeEEEchhheEECCCch--hh-hHHhhhhHHHHHHHHH
Confidence                                                24889999999999999999988  22 2333 67888898887


Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc--CCccE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG--KSLDF  247 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~--~~~d~  247 (299)
                       ...++++++|+|+|+|.+|++++++|+..|++ ++++.+++++.+.+ +++|++++++.+..+   .+.+..  .++|+
T Consensus       124 -~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~  201 (312)
T cd08269         124 -RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALA-RELGATEVVTDDSEAIVERVRELTGGAGADV  201 (312)
T ss_pred             -hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCceEecCCCcCHHHHHHHHcCCCCCCE
Confidence             55569999999998899999999999999998 99988887777755 789998888765432   233332  57999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++|+.|+......++++++++|+++.+|..  ....+++..+..+++++.++
T Consensus       202 vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  253 (312)
T cd08269         202 VIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINA  253 (312)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEe
Confidence            999998776689999999999999999876  34555656667788887765

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.97  E-value=7.4e-29  Score=220.33  Aligned_cols=242  Identities=26%  Similarity=0.353  Sum_probs=204.7

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      ++.+++.+.+.|.+.++|++||+.++++|++|++.+.+.+. ....|.++|||++|+|+++|+++..+++||+|...   
T Consensus        12 ~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~---   88 (323)
T cd05276          12 PEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCAL---   88 (323)
T ss_pred             cccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEe---
Confidence            45577778888888999999999999999999988876553 23457789999999999999999999999999631   


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                      ...|+|++|+.++.+.++++|+++++.+++.+..++.++|+++.....
T Consensus        89 --------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~  136 (323)
T cd05276          89 --------------------------------LAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGG  136 (323)
T ss_pred             --------------------------------cCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcC
Confidence                                            124889999999999999999999999999999999999999877667


Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH---Hh--cCCccEEEEc
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK---AL--GKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~--~~~~d~v~d~  251 (299)
                      +.++++++|+|+ |++|++++++++..|++++++++++++.+.+ +++|.+.+++....+...   ..  .+++|+++++
T Consensus       137 ~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  215 (323)
T cd05276         137 LKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RALGADVAINYRTEDFAEEVKEATGGRGVDVILDM  215 (323)
T ss_pred             CCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEEC
Confidence            799999999997 8999999999999999999999988888888 678988888776543322   22  2579999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|+.. ....+++++++|+++.+|..  ....+++..++.+++++.++
T Consensus       216 ~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
T cd05276         216 VGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGS  262 (323)
T ss_pred             CchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEe
Confidence            99877 88899999999999999876  33456666677788888775

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.97  E-value=1.4e-28  Score=218.88  Aligned_cols=248  Identities=22%  Similarity=0.294  Sum_probs=205.3

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEecc
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY   96 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   96 (299)
                      .++.+++.+++.|.+.+++++|++.++++|++|+..+.|... ....|.++|||++|+|+.+|+++.+|++||+|...+.
T Consensus        11 ~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~   90 (325)
T cd08253          11 APDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNL   90 (325)
T ss_pred             CcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEecc
Confidence            345588889999999999999999999999999988877553 3456888999999999999999999999999975321


Q ss_pred             ccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhcc
Q 022313           97 VNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK  176 (299)
Q Consensus        97 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~  176 (299)
                                                +.    ....|++++|+.++++.++++|+++++.+++.+++++.++|+++....
T Consensus        91 --------------------------~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~  140 (325)
T cd08253          91 --------------------------GW----GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRA  140 (325)
T ss_pred             --------------------------cc----CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHh
Confidence                                      00    013588999999999999999999999999999999999999988766


Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh--cCCccEEEE
Q 022313          177 MNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL--GKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~--~~~~d~v~d  250 (299)
                      .+.++++++|+|+ |++|++++++++..|++|+++++++++.+.+ +++|.+++++....+.   +.+.  .+++|++++
T Consensus       141 ~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  219 (325)
T cd08253         141 GAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV-RQAGADAVFNYRAEDLADRILAATAGQGVDVIIE  219 (325)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEE
Confidence            7799999999997 9999999999999999999999998888888 5789888887665433   2232  258999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++.. ....+++++++|+++.+|.. ....+++..++.++.++.++
T Consensus       220 ~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (325)
T cd08253         220 VLANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGV  266 (325)
T ss_pred             CCchHH-HHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEee
Confidence            999876 88889999999999999875 33445555555667666654

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.97  E-value=6.2e-29  Score=223.95  Aligned_cols=229  Identities=23%  Similarity=0.290  Sum_probs=190.9

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      ++.+++.+++.|+++++||+|+++++++|++|++...+.. ....|.++|||++|+|+.+|+++..+++||+|...+.. 
T Consensus        11 ~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-   88 (339)
T cd08249          11 GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHG-   88 (339)
T ss_pred             CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEecc-
Confidence            4778999999999999999999999999999988775543 12346789999999999999999999999999753221 


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCC
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN  178 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~  178 (299)
                      .|+                          +....|+|++|+.++.+.++++|+++++.+++.+++.+.++|+++.....+
T Consensus        89 ~~~--------------------------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~  142 (339)
T cd08249          89 GNP--------------------------NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGL  142 (339)
T ss_pred             ccC--------------------------CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccC
Confidence            000                          123468999999999999999999999999999999999999998765433


Q ss_pred             ----------CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh-cC
Q 022313          179 ----------QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL-GK  243 (299)
Q Consensus       179 ----------~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~-~~  243 (299)
                                .++++|+|+|+ |.+|++++++|+..|++++.+. ++++.+.+ +++|++++++.++.+.   +.+. .+
T Consensus       143 ~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~-~~~g~~~v~~~~~~~~~~~l~~~~~~  220 (339)
T cd08249         143 PLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLV-KSLGADAVFDYHDPDVVEDIRAATGG  220 (339)
T ss_pred             CCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHH-HhcCCCEEEECCCchHHHHHHHhcCC
Confidence                      68999999997 8999999999999999998887 55777777 7899999988775433   3333 36


Q ss_pred             CccEEEEcCCCchhHHHHHHhccc--CcEEEEEcCC
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      ++|+++|++|++.....+++++++  +|+++.+|..
T Consensus       221 ~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~  256 (339)
T cd08249         221 KLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPV  256 (339)
T ss_pred             CeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCC
Confidence            799999999984559999999999  9999999866

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.97  E-value=1.2e-28  Score=222.82  Aligned_cols=221  Identities=27%  Similarity=0.379  Sum_probs=186.2

Q ss_pred             ccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCC---------------CCCCCccccccccEEEEEecCCCCCc
Q 022313           22 LSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHG---------------DSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus        22 ~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~---------------~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      +++.+.+.|+| .++||+|+++++++|++|.+.+.|...               ....|.++|||++|+|+++|+++.++
T Consensus        16 ~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~~   95 (350)
T cd08248          16 LLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSF   95 (350)
T ss_pred             eeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCcccC
Confidence            78889999999 499999999999999999988876421               23557899999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||+|...+..                                ...|+|++|+.++++.++++|+++++.+++.+++.+
T Consensus        96 ~~Gd~V~~~~~~--------------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~  143 (350)
T cd08248          96 EIGDEVWGAVPP--------------------------------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAG  143 (350)
T ss_pred             CCCCEEEEecCC--------------------------------CCCccceeEEEecHHHeecCCCCCCHHHHhhchhHH
Confidence            999999743210                                135899999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCC----CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHH
Q 022313          166 ITVYTPMMRHKMNQ----PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA  240 (299)
Q Consensus       166 ~ta~~al~~~~~~~----~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  240 (299)
                      .++|+++.....+.    ++++|+|+|+ |++|++++++|+..|++|+++.++ ++.+.+ +++|.+++++..+.+...+
T Consensus       144 ~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~  221 (350)
T cd08248         144 LTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLV-KSLGADDVIDYNNEDFEEE  221 (350)
T ss_pred             HHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHH-HHhCCceEEECCChhHHHH
Confidence            99999987766654    4999999996 999999999999999999888765 455544 7899988888776444433


Q ss_pred             h--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          241 L--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       241 ~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +  .+++|+++|++|+.. ...++++++++|+++.+|..
T Consensus       222 l~~~~~vd~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~  259 (350)
T cd08248         222 LTERGKFDVILDTVGGDT-EKWALKLLKKGGTYVTLVSP  259 (350)
T ss_pred             HHhcCCCCEEEECCChHH-HHHHHHHhccCCEEEEecCC
Confidence            3  267999999999884 99999999999999999855

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=9.9e-28  Score=212.82  Aligned_cols=240  Identities=28%  Similarity=0.360  Sum_probs=200.1

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      ..+.+.+.+.|.+.++|++|+|.++++|+.|++...+.++. ..|.++|||++|+|+.+|+++.++++||+|....    
T Consensus        12 ~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~----   86 (320)
T cd05286          12 EVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG----   86 (320)
T ss_pred             cceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCCCEEEEec----
Confidence            34566677777789999999999999999999888776542 4567899999999999999999999999996310    


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                                                     ..|++++|+.++.+.++++|++++..+++.+...+.++|.++.....++
T Consensus        87 -------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~  135 (320)
T cd05286          87 -------------------------------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVK  135 (320)
T ss_pred             -------------------------------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCC
Confidence                                           1488999999999999999999999999999999999999987777779


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~g  253 (299)
                      ++++|+|+|+ |++|++++++++..|++|+++++++++.+.+ +++|++++++..+...   +.+..  +++|+++++++
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~  214 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA-RAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVG  214 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCC
Confidence            9999999996 9999999999999999999999988888888 6899988887765333   23332  57999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.. ...++++++++|+++.+|..  ....+++..+..+++++.++
T Consensus       215 ~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  259 (320)
T cd05286         215 KDT-FEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRP  259 (320)
T ss_pred             cHh-HHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEE
Confidence            864 88999999999999999977  22345555555777777653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.96  E-value=1e-27  Score=214.36  Aligned_cols=245  Identities=21%  Similarity=0.332  Sum_probs=198.0

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      +.+++++.+.|++.++||+|++.++++|++|...+.|.+. ....|.++|||++|+|++  +++.++++||+|.....  
T Consensus        13 ~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~--   88 (324)
T cd08288          13 TSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTGW--   88 (324)
T ss_pred             cceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCCCCCEEEECCc--
Confidence            3688999999999999999999999999999988877543 123577899999999999  67778999999974210  


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhh---hc
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMM---RH  175 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~---~~  175 (299)
                                                 ..+....|+|++|+.++.+.++++|+++++++++.++..+.+++.+++   ..
T Consensus        89 ---------------------------~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~  141 (324)
T cd08288          89 ---------------------------GVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDH  141 (324)
T ss_pred             ---------------------------cCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhc
Confidence                                       001123589999999999999999999999999999999999887764   33


Q ss_pred             cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH-HHHh-cCCccEEEEcC
Q 022313          176 KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ-MKAL-GKSLDFIIDTA  252 (299)
Q Consensus       176 ~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~-~~~~d~v~d~~  252 (299)
                      ...+++++|+|+|+ |++|++++|+|+.+|+++++++.++++.+.+ +++|+++++++++... +..+ .+++|.++|++
T Consensus       142 ~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  220 (324)
T cd08288         142 GVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYL-RSLGASEIIDRAELSEPGRPLQKERWAGAVDTV  220 (324)
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HhcCCCEEEEcchhhHhhhhhccCcccEEEECC
Confidence            44236789999998 9999999999999999999999999888888 7899999988765332 2223 34689999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++.. ....+..++.+|+++.+|..  ...++++..++.+++++.|+
T Consensus       221 ~~~~-~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08288         221 GGHT-LANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGI  266 (324)
T ss_pred             cHHH-HHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEE
Confidence            9854 77888999999999999976  23345555666788988885

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.96  E-value=2.4e-28  Score=218.12  Aligned_cols=222  Identities=26%  Similarity=0.354  Sum_probs=179.9

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCC----CCCccccccccEE---EEEec-CCCCCcccCCE
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS----KYPLVPGHEIVGI---VKEVG-HNVSRFKVGDH   90 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~----~~p~~lG~e~~G~---V~~vG-~~v~~~~~Gd~   90 (299)
                      +......+.+.|.++++|++|++.++++|+.|+.++.|.....    .+|.+++.++.|.   +...| ..+..+..||.
T Consensus        17 ~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~   96 (347)
T KOG1198|consen   17 GEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDA   96 (347)
T ss_pred             cceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeE
Confidence            3444568899999999999999999999999999998877633    3564444444444   33444 23344666665


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYT  170 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~  170 (299)
                      +.                                   .....|+|+||.++|...++++|+++++++||.++.++.|||.
T Consensus        97 ~~-----------------------------------~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~  141 (347)
T KOG1198|consen   97 VV-----------------------------------AFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALS  141 (347)
T ss_pred             Ee-----------------------------------eccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHH
Confidence            53                                   1245699999999999999999999999999999999999999


Q ss_pred             Hhhhcc------CCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh--
Q 022313          171 PMMRHK------MNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL--  241 (299)
Q Consensus       171 al~~~~------~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~--  241 (299)
                      ++....      .+++|++|||+|+ |++|++++|+|++.++..++++++++..+.+ +++|+++++++++++.+++.  
T Consensus       142 al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~-k~lGAd~vvdy~~~~~~e~~kk  220 (347)
T KOG1198|consen  142 ALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELV-KKLGADEVVDYKDENVVELIKK  220 (347)
T ss_pred             HHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHH-HHcCCcEeecCCCHHHHHHHHh
Confidence            999888      7799999999987 8999999999999998777788888888888 79999999999997665554  


Q ss_pred             --cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          242 --GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 --~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        .++||+||||+|+.. ......++..+|+...++..
T Consensus       221 ~~~~~~DvVlD~vg~~~-~~~~~~~l~~~g~~~~i~~~  257 (347)
T KOG1198|consen  221 YTGKGVDVVLDCVGGST-LTKSLSCLLKGGGGAYIGLV  257 (347)
T ss_pred             hcCCCccEEEECCCCCc-cccchhhhccCCceEEEEec
Confidence              358999999999985 77888888888865444433

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.96  E-value=3.5e-27  Score=210.06  Aligned_cols=243  Identities=26%  Similarity=0.346  Sum_probs=202.1

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      +..+++.+.+.|++.+++++|++.++++|++|+....+.+.. ...|.++|||++|+|+.+|+++.++++||+|...   
T Consensus        12 ~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~---   88 (325)
T TIGR02824        12 PEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCAL---   88 (325)
T ss_pred             cccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEc---
Confidence            344566666667789999999999999999998887765532 2346789999999999999999999999999631   


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                      ...|++++|+.++...++++|+++++..++.++.++.++|+++.....
T Consensus        89 --------------------------------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~  136 (325)
T TIGR02824        89 --------------------------------VAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGG  136 (325)
T ss_pred             --------------------------------cCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcC
Confidence                                            123889999999999999999999999999999999999999877777


Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH---Hhc--CCccEEEEc
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK---ALG--KSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~--~~~d~v~d~  251 (299)
                      ++++++++|+|+ |++|++++++++..|++++++.+++++.+.+ +++|.+.+++....+...   ...  +++|+++++
T Consensus       137 ~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  215 (325)
T TIGR02824       137 LKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EALGADIAINYREEDFVEVVKAETGGKGVDVILDI  215 (325)
T ss_pred             CCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEEC
Confidence            799999999997 9999999999999999999999988888777 789988887766543322   222  479999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +++.. ...++++++++|+++.+|..  ....+++..++.|++++.++.
T Consensus       216 ~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  263 (325)
T TIGR02824       216 VGGSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGST  263 (325)
T ss_pred             CchHH-HHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEe
Confidence            99865 88899999999999999876  233667777778899888753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3.6e-27  Score=210.22  Aligned_cols=247  Identities=23%  Similarity=0.333  Sum_probs=202.4

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      +..+++.+.+.|++.+++++|+|.++++|+.|.....+.+. ....|.++|||++|+|+.+|+++.+|++||+|...+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~   91 (328)
T cd08268          12 PEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAA   91 (328)
T ss_pred             cceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEecccc
Confidence            34566777788889999999999999999999888776543 22346789999999999999999999999999742210


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                    +....|++++|+.++.+.++++|+++++.+++.+++++.++|.++.....
T Consensus        92 ------------------------------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~  141 (328)
T cd08268          92 ------------------------------DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAG  141 (328)
T ss_pred             ------------------------------ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcC
Confidence                                          11235889999999999999999999999999999999999999887777


Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEEc
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~  251 (299)
                      +.++++++|+|+ |.+|++++++++..|++++++++++++.+.+ +++|.+.+++.+....   +.+..  .++|+++++
T Consensus       142 ~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  220 (328)
T cd08268         142 LRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL-LALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDP  220 (328)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcCCCEEEecCCccHHHHHHHHhCCCCceEEEEC
Confidence            789999999997 9999999999999999999999998888887 6789888887665332   22222  479999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .++.. ...++++++++|+++.+|..  ....++....+.+++++.++
T Consensus       221 ~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (328)
T cd08268         221 VGGPQ-FAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGY  267 (328)
T ss_pred             CchHh-HHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEE
Confidence            99965 88899999999999999876  23344544456778877765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.96  E-value=3.6e-27  Score=211.21  Aligned_cols=238  Identities=20%  Similarity=0.196  Sum_probs=192.5

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC---CCCCccccccccEEEEEecCCCCCcccCCEEEEec
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD---SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT   95 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~---~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~   95 (299)
                      ++.+++++.+.|++.++||+||+.++++|+.|.....+....   ...+.++|+|++|+|+++|++  ++++||+|..  
T Consensus        17 ~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~--   92 (329)
T cd05288          17 PDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSG--   92 (329)
T ss_pred             ccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEec--
Confidence            456888899999999999999999999999876555443211   112457899999999999964  7999999952  


Q ss_pred             cccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeec-ceEEEcCCCCC--cccccc-cchhhHHHHHH
Q 022313           96 YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE-RYCYKIANDYP--LALAAP-LLCAGITVYTP  171 (299)
Q Consensus        96 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~-~~~~~~p~~~~--~~~aa~-~~~~~~ta~~a  171 (299)
                                                          .++|++|+.++. +.++++|++++  +..++. +++++.++|++
T Consensus        93 ------------------------------------~~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~  136 (329)
T cd05288          93 ------------------------------------FLGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFG  136 (329)
T ss_pred             ------------------------------------ccceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHH
Confidence                                                247999999999 99999999985  444544 88999999999


Q ss_pred             hhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH---HHh-cCCcc
Q 022313          172 MMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM---KAL-GKSLD  246 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~~~-~~~~d  246 (299)
                      +.....+.++++|||+|+ |.+|++++++|+..|++|+++++++++.+.+++.+|++++++.++.+..   .+. .+++|
T Consensus       137 l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d  216 (329)
T cd05288         137 LTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGID  216 (329)
T ss_pred             HHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCce
Confidence            877777789999999996 9999999999999999999999998888888544999999887764332   222 36799


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-ce-----eeChhhhhcCCeeeeee
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-KV-----KFSPASLNIGNAPLFRF  297 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~-----~~~~~~l~~~~~~~~g~  297 (299)
                      +++|++|+.. +..++++++++|+++.+|.. . ..     .++...++.+++++.++
T Consensus       217 ~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (329)
T cd05288         217 VYFDNVGGEI-LDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGF  273 (329)
T ss_pred             EEEEcchHHH-HHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEee
Confidence            9999999864 99999999999999999876 2 11     13455677888888875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=201.83  Aligned_cols=237  Identities=18%  Similarity=0.163  Sum_probs=193.8

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEec--CCCCCcccCCEEEE
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVG--HNVSRFKVGDHVGV   93 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG--~~v~~~~~Gd~V~~   93 (299)
                      +++|++++.++|+|+++|||+|..|.++++.    ++|+..   .--.|+-+|-..+|.++...  +....|++||.|. 
T Consensus        24 ~d~F~lee~~vp~p~~GqvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~-   98 (340)
T COG2130          24 PDDFRLEEVDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVV-   98 (340)
T ss_pred             CCCceeEeccCCCCCcCceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEE-
Confidence            4669999999999999999999999999873    333332   22346777777766665544  4567799999995 


Q ss_pred             eccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccc--ccccchhhHHHHHH
Q 022313           94 GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLAL--AAPLLCAGITVYTP  171 (299)
Q Consensus        94 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~--aa~~~~~~~ta~~a  171 (299)
                                                           ...+|++|..++.+.+.++.+..-+..  ...+..+..|||.+
T Consensus        99 -------------------------------------~~~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~g  141 (340)
T COG2130          99 -------------------------------------GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFG  141 (340)
T ss_pred             -------------------------------------ecccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHH
Confidence                                                 235899999999999999976532222  34677789999999


Q ss_pred             hhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh----cCCcc
Q 022313          172 MMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL----GKSLD  246 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----~~~~d  246 (299)
                      |...+..++|++|+|.++ |++|..+.|+|+..|++|+.+..++++.+.+.+.+|.|.++|+++++..+.+    .+++|
T Consensus       142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GID  221 (340)
T COG2130         142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGID  221 (340)
T ss_pred             HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeE
Confidence            999999999999999987 9999999999999999999999999999999877999999999987544433    38999


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc----e---eeChhhhhcCCeeeeeec
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK----V---KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~----~---~~~~~~l~~~~~~~~g~~  298 (299)
                      +.||++|+.- +.+++..|+.++|+..+|.. +.    .   +-....++.|+++++||.
T Consensus       222 vyfeNVGg~v-~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfi  280 (340)
T COG2130         222 VYFENVGGEV-LDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFI  280 (340)
T ss_pred             EEEEcCCchH-HHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEE
Confidence            9999999986 99999999999999999988 11    1   122346778899999994

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=6.4e-27  Score=208.57  Aligned_cols=243  Identities=27%  Similarity=0.366  Sum_probs=195.5

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      +.+++++.+.|++.++||+|+++++++|++|.....+... ....|.++|||++|+|+.+|+++.+|++||+|.....  
T Consensus        13 ~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--   90 (326)
T cd08272          13 EVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAG--   90 (326)
T ss_pred             hheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccC--
Confidence            3477778888889999999999999999999988776543 2335778999999999999999999999999963210  


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCC
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN  178 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~  178 (299)
                                              +..    ...|++++|+.++.+.++++|+++++..++.++..+.++|+++.....+
T Consensus        91 ------------------------~~~----~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~  142 (326)
T cd08272          91 ------------------------GLG----GLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAV  142 (326)
T ss_pred             ------------------------CcC----CCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCC
Confidence                                    000    1358899999999999999999999999999999999999998777777


Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHhc--CCccEEEEcCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKALG--KSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~--~~~d~v~d~~g  253 (299)
                      +++++++|+|+ |.+|++++++++..|++|++++++ ++.+.+ +++|.+.+++....  ..+.+..  +++|+++|+++
T Consensus       143 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~  220 (326)
T cd08272         143 QAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFA-RSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVG  220 (326)
T ss_pred             CCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHH-HHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCC
Confidence            99999999986 999999999999999999999987 777777 67999888876643  1222222  47999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.. ...++++++++|+++.+|...  +.++..+..+++++.++
T Consensus       221 ~~~-~~~~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~  261 (326)
T cd08272         221 GET-LDASFEAVALYGRVVSILGGA--THDLAPLSFRNATYSGV  261 (326)
T ss_pred             hHH-HHHHHHHhccCCEEEEEecCC--ccchhhHhhhcceEEEE
Confidence            865 888999999999999997653  22333333566665543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=5.8e-27  Score=209.97  Aligned_cols=221  Identities=24%  Similarity=0.362  Sum_probs=187.4

Q ss_pred             CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCCEEEEecc
Q 022313           18 PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY   96 (299)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   96 (299)
                      .+..+++.+.+.|.+.++||+|++.++++|++|...+.|.... ..+|.++|||++|+|+.+|+++..|++||+|...+ 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~-   89 (331)
T cd08273          11 GPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALT-   89 (331)
T ss_pred             CcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCCCCEEEEeC-
Confidence            3456888899999999999999999999999999888776542 34677899999999999999999999999997421 


Q ss_pred             ccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhcc
Q 022313           97 VNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK  176 (299)
Q Consensus        97 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~  176 (299)
                                                        ..|+|++|+.++.+.++++|+++++.+++.+++++.++|+++....
T Consensus        90 ----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~  135 (331)
T cd08273          90 ----------------------------------RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAA  135 (331)
T ss_pred             ----------------------------------CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhc
Confidence                                              1388999999999999999999999999999999999999987776


Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH-Hh-cCCccEEEEcCC
Q 022313          177 MNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK-AL-GKSLDFIIDTAS  253 (299)
Q Consensus       177 ~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~-~~~~d~v~d~~g  253 (299)
                      .+.++++|+|+|+ |++|++++++|+..|++|++++. +++.+.+ +++|++.+ +....+... .. .+++|+++++++
T Consensus       136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~d~vl~~~~  212 (331)
T cd08273         136 KVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAAL-RELGATPI-DYRTKDWLPAMLTPGGVDVVFDGVG  212 (331)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHH-HHcCCeEE-cCCCcchhhhhccCCCceEEEECCc
Confidence            7799999999997 99999999999999999999987 6666666 67886544 333221111 12 367999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.. ...++++++++|+++.+|..
T Consensus       213 ~~~-~~~~~~~l~~~g~~v~~g~~  235 (331)
T cd08273         213 GES-YEESYAALAPGGTLVCYGGN  235 (331)
T ss_pred             hHH-HHHHHHHhcCCCEEEEEccC
Confidence            987 88999999999999999877

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.4e-26  Score=206.48  Aligned_cols=232  Identities=27%  Similarity=0.426  Sum_probs=192.3

Q ss_pred             eEEeeeCCC--CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccC
Q 022313           11 LGWAARDPS--GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        11 ~~~~~~~~~--~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      +++.+.++.  .++++.+++.|++.+++|+||+.++++|++|+..+.+.......|.++|||++|+|+.+|+++.++++|
T Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G   81 (325)
T cd08271           2 KAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKVG   81 (325)
T ss_pred             eeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCCC
Confidence            445553333  379999999999999999999999999999988876655322346789999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|...+.                                ....|+|++|+.++.+.++++|++++..+++.+.+.+.++
T Consensus        82 d~V~~~~~--------------------------------~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a  129 (325)
T cd08271          82 DRVAYHAS--------------------------------LARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTA  129 (325)
T ss_pred             CEEEeccC--------------------------------CCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHH
Confidence            99974221                                0135889999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHh--c
Q 022313          169 YTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKAL--G  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~--~  242 (299)
                      ++++.....++++++++|+|+ |.+|++++++++..|++++++. ++++.+.+ +++|.+.+++......   +...  .
T Consensus       130 ~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  207 (325)
T cd08271         130 YQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYV-KSLGADHVIDYNDEDVCERIKEITGG  207 (325)
T ss_pred             HHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHH-HHcCCcEEecCCCccHHHHHHHHcCC
Confidence            999987777799999999998 8999999999999999988877 56666666 6899988887665332   3333  2


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++|++++++++.. ....+++++++|+++.+|..
T Consensus       208 ~~~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~  241 (325)
T cd08271         208 RGVDAVLDTVGGET-AAALAPTLAFNGHLVCIQGR  241 (325)
T ss_pred             CCCcEEEECCCcHh-HHHHHHhhccCCEEEEEcCC
Confidence            57999999999876 67789999999999998755

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.95  E-value=1e-26  Score=210.50  Aligned_cols=232  Identities=21%  Similarity=0.241  Sum_probs=182.1

Q ss_pred             EEeeeCCCCcccceeeecCCC---CCCcEEEEEceeecccchhhhhccCCCCCC-CCccccccccEEEEEecCCCC-Ccc
Q 022313           12 GWAARDPSGVLSPYSFNRRAV---GSDDVSITITHCGVCYADVIWTRNKHGDSK-YPLVPGHEIVGIVKEVGHNVS-RFK   86 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~---~~~evlv~v~~~~i~~~D~~~~~g~~~~~~-~p~~lG~e~~G~V~~vG~~v~-~~~   86 (299)
                      ++.+.+..+.+++++.+.|.|   .++||+||+.++++|++|+..+.+...... .|.++|+|++|+|+++|+++. .|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~   82 (352)
T cd08247           3 ALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEWK   82 (352)
T ss_pred             eEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCCC
Confidence            445545545566666666654   899999999999999999887754322112 367899999999999999998 899


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc----eEEEcCCCCCcccccccc
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER----YCYKIANDYPLALAAPLL  162 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~----~~~~~p~~~~~~~aa~~~  162 (299)
                      +||+|.....    +.                          ....|+|++|+.++..    .++++|+++++.+++.++
T Consensus        83 ~Gd~V~~~~~----~~--------------------------~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~  132 (352)
T cd08247          83 VGDEVCGIYP----HP--------------------------YGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWP  132 (352)
T ss_pred             CCCEEEEeec----CC--------------------------CCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhH
Confidence            9999964211    00                          0135899999999987    799999999999999999


Q ss_pred             hhhHHHHHHhhhcc-CCCCCCEEEEEcC-ChHHHHHHHHHHHCC-C-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH--
Q 022313          163 CAGITVYTPMMRHK-MNQPGKSLGVIGL-GGLGHMAVKFGKAFG-L-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE--  236 (299)
Q Consensus       163 ~~~~ta~~al~~~~-~~~~g~~vlI~G~-g~~G~~a~~~a~~~g-~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--  236 (299)
                      .++.|+|+++.... .+++|++|+|+|+ |.+|++++++|+..+ . .++.+. ++++.+.+ +++|++++++.++..  
T Consensus       133 ~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~-~~~g~~~~i~~~~~~~~  210 (352)
T cd08247         133 LVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELN-KKLGADHFIDYDAHSGV  210 (352)
T ss_pred             HHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHH-HHhCCCEEEecCCCccc
Confidence            99999999998776 6799999999998 799999999999874 4 566665 45555555 789999988866433  


Q ss_pred             -H----HHHh--cCCccEEEEcCCCchhHHHHHHhcc---cCcEEEEEc
Q 022313          237 -Q----MKAL--GKSLDFIIDTASGDHPFDAYMSLLK---VAGVYVLVG  275 (299)
Q Consensus       237 -~----~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~---~~G~~v~~g  275 (299)
                       .    +...  .+++|+++|++|+......++++++   ++|+++.++
T Consensus       211 ~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         211 KLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             chHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEe
Confidence             2    2222  3689999999998555888999999   999999875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08251 polyketide_synthase polyketide synthase

Probab=99.95  E-value=3.4e-26  Score=201.81  Aligned_cols=213  Identities=25%  Similarity=0.379  Sum_probs=182.9

Q ss_pred             cCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCcccc
Q 022313           29 RRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCN  107 (299)
Q Consensus        29 ~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~  107 (299)
                      .|++.+++++|++.++++|++|+..+.+.+. ....|.++|+|++|+|+++|+++.++++||+|.....           
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-----------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-----------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence            5778899999999999999999988877654 2346788999999999999999999999999974211           


Q ss_pred             CCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEE
Q 022313          108 DGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                                            ...|+|++|+.++++.++++|+++++.+++.++..+.++|.+++ ...++++++++|+
T Consensus        71 ----------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~  127 (303)
T cd08251          71 ----------------------ESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQ  127 (303)
T ss_pred             ----------------------CCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEe
Confidence                                  13589999999999999999999999999999999999999986 4566999999998


Q ss_pred             cC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEEcCCCchhHHHH
Q 022313          188 GL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       188 G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~  261 (299)
                      |+ |.+|++++++++..|++++++++++++.+.+ +++|.+++++....+.   +....  +++|+++|++++.. ...+
T Consensus       128 ~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~  205 (303)
T cd08251         128 TATGGTGLMAVQLARLKGAEIYATASSDDKLEYL-KQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEA-IQKG  205 (303)
T ss_pred             cCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHH-HHHH
Confidence            76 9999999999999999999999998888888 6899999887765433   22332  57999999998755 8899


Q ss_pred             HHhcccCcEEEEEcCC
Q 022313          262 MSLLKVAGVYVLVGFP  277 (299)
Q Consensus       262 ~~~l~~~G~~v~~g~~  277 (299)
                      +++++++|+++.+|..
T Consensus       206 ~~~l~~~g~~v~~~~~  221 (303)
T cd08251         206 LNCLAPGGRYVEIAMT  221 (303)
T ss_pred             HHHhccCcEEEEEecc
Confidence            9999999999999865

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.95  E-value=3.2e-26  Score=202.43  Aligned_cols=222  Identities=27%  Similarity=0.394  Sum_probs=186.6

Q ss_pred             cccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccc
Q 022313           21 VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYV   97 (299)
Q Consensus        21 ~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   97 (299)
                      .+++.+.+.|.+.++||+|++.++++|++|+..+.|...   ....|.++|||++|+|+.+|+++.++++||+|...+..
T Consensus        14 ~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~   93 (309)
T cd05289          14 VLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPF   93 (309)
T ss_pred             ceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEccCC
Confidence            355667777888999999999999999999988877542   23457789999999999999999999999999743210


Q ss_pred             cCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccC
Q 022313           98 NSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM  177 (299)
Q Consensus        98 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~  177 (299)
                                                      ...|+|++|+.++...++++|+++++..++.+++.+.++|+++.....
T Consensus        94 --------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~  141 (309)
T cd05289          94 --------------------------------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGG  141 (309)
T ss_pred             --------------------------------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcC
Confidence                                            124889999999999999999999999999999999999999988776


Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH-HhcCCccEEEEcCCCc
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK-ALGKSLDFIIDTASGD  255 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~~~d~v~d~~g~~  255 (299)
                      +.++++|+|+|+ |.+|++++++++..|++++++++++ +.+.+ +++|.+++++....+..+ ...+++|++++++++.
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~  219 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFL-RSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE  219 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHH-HHcCCCEEEeCCCCchhhccCCCCceEEEECCchH
Confidence            799999999997 9999999999999999999998776 66666 689988888766533222 1235799999999988


Q ss_pred             hhHHHHHHhcccCcEEEEEcCC
Q 022313          256 HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       256 ~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      . ...++++++++|+++.+|..
T Consensus       220 ~-~~~~~~~l~~~g~~v~~g~~  240 (309)
T cd05289         220 T-LARSLALVKPGGRLVSIAGP  240 (309)
T ss_pred             H-HHHHHHHHhcCcEEEEEcCC
Confidence            5 89999999999999999876

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=9.8e-26  Score=200.41  Aligned_cols=242  Identities=30%  Similarity=0.479  Sum_probs=197.7

Q ss_pred             CCcccceeeecCCCC-CCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEecc
Q 022313           19 SGVLSPYSFNRRAVG-SDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY   96 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~-~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~   96 (299)
                      ++.+++.+.+ |.+. ++|++|++.++++|++|++.+.|.+. ....|.++|||++|+|+.+|+++.++++||+|...+ 
T Consensus        12 ~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~-   89 (323)
T cd08241          12 PEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT-   89 (323)
T ss_pred             cceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec-
Confidence            3456666666 6665 59999999999999999988777653 233466899999999999999999999999997421 


Q ss_pred             ccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhcc
Q 022313           97 VNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK  176 (299)
Q Consensus        97 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~  176 (299)
                                                        ..|++++|+.++.+.++++|++++..+++.+...+.++|.++....
T Consensus        90 ----------------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~  135 (323)
T cd08241          90 ----------------------------------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRA  135 (323)
T ss_pred             ----------------------------------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhc
Confidence                                              1488999999999999999999999999889999999999987666


Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEE
Q 022313          177 MNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d  250 (299)
                      .++++++|+|+|+ |.+|++++++++..|++|+++++++++.+.+ +++|.+.+++....+.   +....  +++|++++
T Consensus       136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~  214 (323)
T cd08241         136 RLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA-RALGADHVIDYRDPDLRERVKALTGGRGVDVVYD  214 (323)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH-HHcCCceeeecCCccHHHHHHHHcCCCCcEEEEE
Confidence            7789999999998 9999999999999999999999998888887 5789888887665333   23332  57999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC-Ccee-eChhhhhcCCeeeeeec
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP-SKVK-FSPASLNIGNAPLFRFK  298 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~-~~~~~l~~~~~~~~g~~  298 (299)
                      ++|+.. ...++++++++|+++.+|.. .... +++...+.+++++.++.
T Consensus       215 ~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
T cd08241         215 PVGGDV-FEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVY  263 (323)
T ss_pred             CccHHH-HHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEe
Confidence            999855 88899999999999999876 2222 44445667888887753

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.5e-25  Score=199.38  Aligned_cols=221  Identities=27%  Similarity=0.340  Sum_probs=182.3

Q ss_pred             cceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccC
Q 022313           23 SPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNS   99 (299)
Q Consensus        23 ~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   99 (299)
                      ++.+.+.|++.++||+|+++++++|++|.+.+.|.+.   ....|.++|||++|+|+++|+++.++++||+|......  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            7788999999999999999999999999988877552   12346689999999999999999999999999743210  


Q ss_pred             CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCC
Q 022313          100 CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       100 c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~  179 (299)
                                                    ...|+|++|+.++.+.++++|+++++.+++.+++++.++|+++.....++
T Consensus        93 ------------------------------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  142 (319)
T cd08267          93 ------------------------------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVK  142 (319)
T ss_pred             ------------------------------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCC
Confidence                                          12488999999999999999999999999999999999999998887779


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh--cCCccEEEEcCCCch
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL--GKSLDFIIDTASGDH  256 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~--~~~~d~v~d~~g~~~  256 (299)
                      ++++|+|+|+ |++|++++++|+..|++|++++++ ++.+.+ +++|.+++++....+.....  .+++|++++++++..
T Consensus       143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  220 (319)
T cd08267         143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELV-RSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSP  220 (319)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHH-HHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchH
Confidence            9999999998 999999999999999999998865 666666 78998888876543221222  367999999999532


Q ss_pred             -hHHHHHHhcccCcEEEEEcCC
Q 022313          257 -PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 -~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       .....+..++++|+++.+|..
T Consensus       221 ~~~~~~~~~l~~~g~~i~~g~~  242 (319)
T cd08267         221 FSLYRASLALKPGGRYVSVGGG  242 (319)
T ss_pred             HHHHHhhhccCCCCEEEEeccc
Confidence             233444459999999999977

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=5e-25  Score=197.50  Aligned_cols=240  Identities=28%  Similarity=0.398  Sum_probs=190.8

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      +.+++.+.+.|++.++||+|++.++++|++|...+.|.+. ....|.++|||++|+|+.+|+++.++++||+|....   
T Consensus        12 ~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~---   88 (337)
T cd08275          12 DKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT---   88 (337)
T ss_pred             cceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec---
Confidence            3566777777888999999999999999999988877653 234577899999999999999999999999997421   


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCC
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN  178 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~  178 (299)
                                                      ..|+|++|+.++.+.++++|+++++.+++.+.+++.++|+++.....+
T Consensus        89 --------------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~  136 (337)
T cd08275          89 --------------------------------RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNL  136 (337)
T ss_pred             --------------------------------CCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCC
Confidence                                            238899999999999999999999999999999999999998777777


Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhcCCCEEEeCCCHH---HHHHh-cCCccEEEEcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLLGADKFVVSSDLE---QMKAL-GKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~-~~~~d~v~d~~  252 (299)
                      +++++|+|+|+ |.+|++++++|+.. ..+.++.. .+++.+.+ +++|.+.+++.....   .+.+. .+++|+++|++
T Consensus       137 ~~~~~vli~g~~g~~g~~~~~~a~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~  214 (337)
T cd08275         137 RPGQSVLVHSAAGGVGLAAGQLCKTV-PNVTVVGTASASKHEAL-KENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDAL  214 (337)
T ss_pred             CCCCEEEEEcCcchHHHHHHHHHHHc-cCcEEEEeCCHHHHHHH-HHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECC
Confidence            99999999998 99999999999998 32233322 33456666 678988888766432   22222 36799999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCCC---cee---------------eChhhhhcCCeeeeee
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFPS---KVK---------------FSPASLNIGNAPLFRF  297 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~---------------~~~~~l~~~~~~~~g~  297 (299)
                      |+.. ...++++++++|+++.+|...   ...               +....++.+++++.++
T Consensus       215 g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (337)
T cd08275         215 GGED-TRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGF  276 (337)
T ss_pred             cHHH-HHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEe
Confidence            9875 888999999999999998761   111               2224556777777765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.94  E-value=3.1e-25  Score=194.00  Aligned_cols=203  Identities=28%  Similarity=0.391  Sum_probs=175.9

Q ss_pred             CcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccc
Q 022313           35 DDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHC  114 (299)
Q Consensus        35 ~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~  114 (299)
                      +|++||+.++++|++|++...|.+  ...|.++|||++|+|+++|+++..+++||+|...                    
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~--------------------   58 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL--------------------   58 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEE--------------------
Confidence            589999999999999999887765  2457789999999999999999999999999642                    


Q ss_pred             cccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHH
Q 022313          115 ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLG  193 (299)
Q Consensus       115 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G  193 (299)
                                      ..|+|++|+.++.+.++++|+++++.+++.+++++.++|.++.....++++++|+|+|+ |.+|
T Consensus        59 ----------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g  122 (293)
T cd05195          59 ----------------APGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVG  122 (293)
T ss_pred             ----------------ecCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHH
Confidence                            24889999999999999999999999999999999999999877667799999999975 9999


Q ss_pred             HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC--CCEEEeCCCHHH---HHHh--cCCccEEEEcCCCchhHHHHHHhcc
Q 022313          194 HMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG--ADKFVVSSDLEQ---MKAL--GKSLDFIIDTASGDHPFDAYMSLLK  266 (299)
Q Consensus       194 ~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~---~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~  266 (299)
                      ++++++++..|++++++++++++.+.+ ++++  ++.+++..+.+.   +.+.  .+++|++++++++. ....++++++
T Consensus       123 ~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~  200 (293)
T cd05195         123 QAAIQLAQHLGAEVFATVGSEEKREFL-RELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGE-LLRASWRCLA  200 (293)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHHHHHHH-HHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCch-HHHHHHHhcc
Confidence            999999999999999999988888887 4666  677777665433   2233  25799999999988 4999999999


Q ss_pred             cCcEEEEEcCC
Q 022313          267 VAGVYVLVGFP  277 (299)
Q Consensus       267 ~~G~~v~~g~~  277 (299)
                      ++|+++.+|..
T Consensus       201 ~~g~~v~~g~~  211 (293)
T cd05195         201 PFGRFVEIGKR  211 (293)
T ss_pred             cCceEEEeecc
Confidence            99999999876

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.94  E-value=7.5e-25  Score=191.44  Aligned_cols=217  Identities=23%  Similarity=0.360  Sum_probs=179.6

Q ss_pred             EEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccc
Q 022313           39 ITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSV  118 (299)
Q Consensus        39 v~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~  118 (299)
                      ||+.++++|++|++.+.|.++   .|.++|||++|+|+++|+++..|++||+|...                        
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~------------------------   54 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL------------------------   54 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE------------------------
Confidence            789999999999998877553   36789999999999999999999999999642                        


Q ss_pred             cccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHH
Q 022313          119 YTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAV  197 (299)
Q Consensus       119 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~  197 (299)
                                  ..|+|++|+.++.+.++++|+++++.+++.+.+.+.++|.++.....++++++|+|+|+ |.+|++++
T Consensus        55 ------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~  122 (288)
T smart00829       55 ------------APGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAI  122 (288)
T ss_pred             ------------cCCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHH
Confidence                        24889999999999999999999999999999999999999866666799999999986 99999999


Q ss_pred             HHHHHCCCeEEEEeCCchHHHHHHHhcCC--CEEEeCCCHHH---HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcE
Q 022313          198 KFGKAFGLNVTVLSTSTSKKEEALSLLGA--DKFVVSSDLEQ---MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGV  270 (299)
Q Consensus       198 ~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~  270 (299)
                      ++++..|++|+++++++++.+.+ +++|.  +.+++..+.+.   +.+..  +++|+++|++++. ....++++++++|+
T Consensus       123 ~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~  200 (288)
T smart00829      123 QLAQHLGAEVFATAGSPEKRDFL-RELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGE-FLDASLRCLAPGGR  200 (288)
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHH-HHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHH-HHHHHHHhccCCcE
Confidence            99999999999999999988888 68997  77777665433   22222  4799999999975 48889999999999


Q ss_pred             EEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          271 YVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       271 ~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++.+|..   ....+++.. +.+++++.++
T Consensus       201 ~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~  229 (288)
T smart00829      201 FVEIGKRDIRDNSQLGMAP-FRRNVSYHAV  229 (288)
T ss_pred             EEEEcCcCCccccccchhh-hcCCceEEEE
Confidence            9999876   223344333 3455555543

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.90  E-value=1.9e-22  Score=176.43  Aligned_cols=193  Identities=27%  Similarity=0.372  Sum_probs=156.2

Q ss_pred             CCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEE
Q 022313           61 SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIV  140 (299)
Q Consensus        61 ~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  140 (299)
                      .++|.++|||++|+|+++|+++++|++||+|..                                      .+.|++|+.
T Consensus        18 ~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~--------------------------------------~~~~~~~~~   59 (277)
T cd08255          18 LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFC--------------------------------------FGPHAERVV   59 (277)
T ss_pred             CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEe--------------------------------------cCCcceEEE
Confidence            558899999999999999999999999999963                                      135899999


Q ss_pred             eecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHH
Q 022313          141 VHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEE  219 (299)
Q Consensus       141 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~  219 (299)
                      ++.+.++++|+++++.+++.+ +.+.++|+++.. ..++++++++|+|+|.+|++++++|+..|++ |+++++++++.+.
T Consensus        60 v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~~-~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~  137 (277)
T cd08255          60 VPANLLVPLPDGLPPERAALT-ALAATALNGVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARREL  137 (277)
T ss_pred             cCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHH
Confidence            999999999999999998888 789999999874 5569999999998899999999999999998 9999998888885


Q ss_pred             HHHhcC-CCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          220 ALSLLG-ADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       220 ~~~~~g-~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      + +++| .+++++..+..   ...+++|++||+++........+++++++|+++.+|.. .........+..+.+++.++
T Consensus       138 ~-~~~g~~~~~~~~~~~~---~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  213 (277)
T cd08255         138 A-EALGPADPVAADTADE---IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRSS  213 (277)
T ss_pred             H-HHcCCCccccccchhh---hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEee
Confidence            5 7888 56665443211   12367999999998766688999999999999999987 33111122344455555543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.89  E-value=3.6e-23  Score=155.78  Aligned_cols=108  Identities=34%  Similarity=0.659  Sum_probs=93.1

Q ss_pred             CCcEEEEEceeecccchhhhhcc-CCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCc
Q 022313           34 SDDVSITITHCGVCYADVIWTRN-KHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEV  112 (299)
Q Consensus        34 ~~evlv~v~~~~i~~~D~~~~~g-~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~  112 (299)
                      |+||||||++++||++|++.+.| .......|.++|||++|+|+++|+++++|++||+|++.+.. .|+.|.+|+.+.+.
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~c~~~~~~   79 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNI-GCGECEYCLSGRPN   79 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEE-ETSSSHHHHTTTGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeeccc-CccCchhhcCCccc
Confidence            68999999999999999999988 34457889999999999999999999999999999987765 59999999999999


Q ss_pred             cccccccccccccCCCCccCCcceeeEEeecceEEEc
Q 022313          113 HCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI  149 (299)
Q Consensus       113 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  149 (299)
                      +|+.....       |....|+|+||+.+|+++++++
T Consensus        80 ~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   80 LCPNPEVL-------GLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GTTTBEET-------TTSSTCSSBSEEEEEGGGEEEE
T ss_pred             cCCCCCEe-------EcCCCCcccCeEEEehHHEEEC
Confidence            99876544       3346799999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.88  E-value=8.5e-21  Score=160.16  Aligned_cols=228  Identities=20%  Similarity=0.237  Sum_probs=175.3

Q ss_pred             CCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccc----cccEEEEEecCCCCCcccCCEEEEeccccCCCCCc
Q 022313           30 RAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGH----EIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCE  104 (299)
Q Consensus        30 p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~----e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~  104 (299)
                      .++.+++||||..|.+..+.-...++...+. --.|+.+|-    .++|+|++.  +..++++||.|..           
T Consensus        33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g-----------   99 (343)
T KOG1196|consen   33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG-----------   99 (343)
T ss_pred             CCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE-----------
Confidence            4678899999999999976554322211110 112333332    678999995  5578999999952           


Q ss_pred             cccCCCCccccccccccccccCCCCccCCcceeeEEeecce--EEEcCC--CCCcccc-cccchhhHHHHHHhhhccCCC
Q 022313          105 YCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY--CYKIAN--DYPLALA-APLLCAGITVYTPMMRHKMNQ  179 (299)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~--~~~~p~--~~~~~~a-a~~~~~~~ta~~al~~~~~~~  179 (299)
                                                 --+|.||..+++..  .++++.  ++++... ..+..+.+|||-.+......+
T Consensus       100 ---------------------------~~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk  152 (343)
T KOG1196|consen  100 ---------------------------IVGWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPK  152 (343)
T ss_pred             ---------------------------eccceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCC
Confidence                                       12799999997653  444443  4444433 356778899999988777779


Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-----cCCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-----~~~~d~v~d~~g  253 (299)
                      +|++|+|.|| |++|+++.|+|+.+|++|+.++.++++...+++++|.+..+|+.++..+.+.     .+++|+.||++|
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVG  232 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVG  232 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccC
Confidence            9999999987 9999999999999999999999999999999999999999999987433332     379999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCCC----cee---eChhhhhcCCeeeeeec
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFPS----KVK---FSPASLNIGNAPLFRFK  298 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~~----~~~---~~~~~l~~~~~~~~g~~  298 (299)
                      +.. +.+++..|+.+|+++.+|+.+    ..+   -++.+.+.|++++.||.
T Consensus       233 G~~-lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgfl  283 (343)
T KOG1196|consen  233 GKM-LDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFL  283 (343)
T ss_pred             cHH-HHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEE
Confidence            987 999999999999999999881    222   22357789999999985

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.86  E-value=2.2e-21  Score=186.32  Aligned_cols=221  Identities=15%  Similarity=0.217  Sum_probs=183.9

Q ss_pred             CCCCCcEEEEEceeecccchhhhhccCCCCCCC-------CccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCC
Q 022313           31 AVGSDDVSITITHCGVCYADVIWTRNKHGDSKY-------PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDC  103 (299)
Q Consensus        31 ~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~-------p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c  103 (299)
                      +..++.=+-.|-|+.+|.+|+.+..|..+....       ..+||-|++|+          .+-|.||+..         
T Consensus      1441 ~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRvM~m--------- 1501 (2376)
T KOG1202|consen 1441 PTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRVMGM--------- 1501 (2376)
T ss_pred             CCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEEEEe---------
Confidence            346666789999999999999999888753222       35789999998          4559999743         


Q ss_pred             ccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCE
Q 022313          104 EYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKS  183 (299)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~  183 (299)
                                                ...-++++.+.++.+.+|.+|++..+++|++.|+.+.|+|+|+-..+..++|++
T Consensus      1502 --------------------------vpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGek 1555 (2376)
T KOG1202|consen 1502 --------------------------VPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEK 1555 (2376)
T ss_pred             --------------------------eehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcE
Confidence                                      334678888888999999999999999999999999999999988888899999


Q ss_pred             EEEEc-CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CCEEEeCCCHHH---HHHh--cCCccEEEEcCCC
Q 022313          184 LGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---ADKFVVSSDLEQ---MKAL--GKSLDFIIDTASG  254 (299)
Q Consensus       184 vlI~G-~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~---~~~~--~~~~d~v~d~~g~  254 (299)
                      +||++ +|++|++|+.+|...|++|+.++.+.++++.+++.|+   ..++-|.++-+.   +.+-  ++|+|+|++....
T Consensus      1556 iLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLae 1635 (2376)
T KOG1202|consen 1556 ILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAE 1635 (2376)
T ss_pred             EEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhH
Confidence            99995 5999999999999999999999999999999988888   456667666322   2222  4799999999999


Q ss_pred             chhHHHHHHhcccCcEEEEEcCC-CceeeCh-hhhhcCCeeeeee
Q 022313          255 DHPFDAYMSLLKVAGVYVLVGFP-SKVKFSP-ASLNIGNAPLFRF  297 (299)
Q Consensus       255 ~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~-~~l~~~~~~~~g~  297 (299)
                      .. ++++++||+.+|||..+|.. -+.+-|+ +..+.|+.+++|-
T Consensus      1636 Ek-LQASiRCLa~~GRFLEIGKfDLSqNspLGMavfLkNvsfHGi 1679 (2376)
T KOG1202|consen 1636 EK-LQASIRCLALHGRFLEIGKFDLSQNSPLGMAVFLKNVSFHGI 1679 (2376)
T ss_pred             HH-HHHHHHHHHhcCeeeeecceecccCCcchhhhhhcccceeee
Confidence            88 99999999999999999998 2333333 4567899999885

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.59  E-value=1.6e-14  Score=111.96  Aligned_cols=107  Identities=29%  Similarity=0.417  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc--CCccEEEEcCCCchhHHHHHHhc
Q 022313          191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG--KSLDFIIDTASGDHPFDAYMSLL  265 (299)
Q Consensus       191 ~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l  265 (299)
                      ++|++++|+|+..|++|+++++++++++.+ +++|+++++++++.+   .+.++.  +++|+||||+|....++.+++++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~-~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELA-KELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHH-HhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence            589999999999999999999999998888 799999999988754   444444  37999999999777899999999


Q ss_pred             ccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          266 KVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       266 ~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +++|+++.+|..  ...+++...++.|++++.|+.
T Consensus        80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~  114 (130)
T PF00107_consen   80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSW  114 (130)
T ss_dssp             EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEES
T ss_pred             ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEc
Confidence            999999999999  699999999999999999975

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.27  E-value=8.9e-11  Score=109.66  Aligned_cols=119  Identities=19%  Similarity=0.207  Sum_probs=94.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCH-------------HH---H---
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDL-------------EQ---M---  238 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~-------------~~---~---  238 (299)
                      .++++|+|+|+|.+|+.+++.|+.+|++|++++.++++++++ +++|++.+ ++..+.             +.   .   
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a-eslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV-ESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            689999999999999999999999999999999999999988 68999854 444221             10   0   


Q ss_pred             -HHhcCCccEEEEcCCCc-----hh-HHHHHHhcccCcEEEEEcCC--C--ceeeChhhhhc-CCeeeeeec
Q 022313          239 -KALGKSLDFIIDTASGD-----HP-FDAYMSLLKVAGVYVLVGFP--S--KVKFSPASLNI-GNAPLFRFK  298 (299)
Q Consensus       239 -~~~~~~~d~v~d~~g~~-----~~-~~~~~~~l~~~G~~v~~g~~--~--~~~~~~~~l~~-~~~~~~g~~  298 (299)
                       .+..+++|+||+|++.+     .. .+.+++.++++|+++++|..  .  ..+++...++. +++++.|+.
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~  313 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT  313 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeC
Confidence             11125799999999963     24 49999999999999999985  3  35555566776 899999853

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.13  E-value=1.3e-09  Score=99.49  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             HHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccE
Q 022313          169 YTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       169 ~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      |.++.+. ....+|++|+|+|.|.+|+.+++.++..|++|++++.++.+.+.+ +++|++.+ +.      .+...++|+
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-~~~G~~~~-~~------~e~v~~aDV  260 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-AMEGYEVM-TM------EEAVKEGDI  260 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-HhcCCEEc-cH------HHHHcCCCE
Confidence            4555443 444789999999999999999999999999999999998888887 68898543 21      123367899


Q ss_pred             EEEcCCCchhHHHH-HHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          248 IIDTASGDHPFDAY-MSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       248 v~d~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ||+++|....+... ++.++++|+++.+|.. ...+++..+..+++++.|-
T Consensus       261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~-~~eId~~~L~~~el~i~g~  310 (413)
T cd00401         261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHF-DVEIDVKGLKENAVEVVNI  310 (413)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEeCCC-CCccCHHHHHhhccEEEEc
Confidence            99999998877765 9999999999999966 5678888899888888764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.68  E-value=1.3e-06  Score=77.18  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEE
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      +++.....-.+++++|+|.|.+|+.+++.++.+|++|++++++.++.+++ +++|.+.+ .   .+.+.+...++|+||+
T Consensus       142 a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-~~~G~~~~-~---~~~l~~~l~~aDiVI~  216 (296)
T PRK08306        142 AIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-TEMGLSPF-H---LSELAEEVGKIDIIFN  216 (296)
T ss_pred             HHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCeee-c---HHHHHHHhCCCCEEEE
Confidence            44433332468999999999999999999999999999999998887777 57886533 1   1233444578999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                      +++.....+..++.+++++.+++++.. ...++  ...-.++++..+
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~  261 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALL  261 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEE
Confidence            998765566778899999999999887 44444  233344555543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.64  E-value=4.2e-07  Score=85.07  Aligned_cols=98  Identities=26%  Similarity=0.274  Sum_probs=77.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCC-------------HHH-------
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSD-------------LEQ-------  237 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~-------------~~~-------  237 (299)
                      .++++|+|+|+|.+|+.+++.++.+|++|+++++++++++.+ +++|++.+. +..+             .+.       
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            467999999999999999999999999999999999988888 679976533 2211             011       


Q ss_pred             HHHhcCCccEEEEcC---CCch---hHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTA---SGDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~---g~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..+..+++|++|+++   |.+.   ..+..++.+++++.+++++..
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence            222347899999999   5432   678889999999999999766

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.59  E-value=1.2e-06  Score=80.49  Aligned_cols=110  Identities=15%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             HHHHHHhhhccC-CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCC
Q 022313          166 ITVYTPMMRHKM-NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       166 ~ta~~al~~~~~-~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  244 (299)
                      ..+|+++.+... .-+|++|+|+|.|.+|..+++.++..|++|+++++++.+..++ ...|++ +.+      +.+...+
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-~~~G~~-v~~------l~eal~~  267 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-AMDGFR-VMT------MEEAAEL  267 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-HhcCCE-ecC------HHHHHhC
Confidence            445677666633 3489999999999999999999999999999999988776666 345654 221      2233468


Q ss_pred             ccEEEEcCCCchhHH-HHHHhcccCcEEEEEcCC-CceeeC
Q 022313          245 LDFIIDTASGDHPFD-AYMSLLKVAGVYVLVGFP-SKVKFS  283 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~-~~~~~~  283 (299)
                      +|+|++++|....+. ..+..+++++.++.+|.. ...+++
T Consensus       268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~  308 (425)
T PRK05476        268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVA  308 (425)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChH
Confidence            999999999877665 688999999999999987 444433

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.40  E-value=4.1e-06  Score=76.30  Aligned_cols=98  Identities=19%  Similarity=0.248  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCC---C--
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTAS---G--  254 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g---~--  254 (299)
                      ++.+|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.++........+.+.+.+....+|++|++++   .  
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~  245 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA  245 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence            45669999999999999999999999999999998888887666765433333444555555578999999973   2  


Q ss_pred             ch-hHHHHHHhcccCcEEEEEcCC
Q 022313          255 DH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 ~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +. .....++.+++++.+++++..
T Consensus       246 p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       246 PKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             CcCcCHHHHhcCCCCCEEEEEecC
Confidence            11 247788889999999999866

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.36  E-value=6.2e-06  Score=75.37  Aligned_cols=102  Identities=18%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             HHHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          168 VYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       168 a~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      .+.++.+. ....+|++|+|+|.|.+|+..++.++..|++|++++.++.+..++ ...|+. +.+.      .+...+.|
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~~~G~~-v~~l------eeal~~aD  252 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-AMDGFR-VMTM------EEAAKIGD  252 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-HhcCCE-eCCH------HHHHhcCC
Confidence            34555444 334789999999999999999999999999999999888776665 455653 3221      22335789


Q ss_pred             EEEEcCCCchhHHH-HHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGDHPFDA-YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~~~~~-~~~~l~~~G~~v~~g~~  277 (299)
                      ++|+++|....+.. .+..+++++.++.+|..
T Consensus       253 VVItaTG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       253 IFITATGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             EEEECCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999886664 88999999999999887

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.34  E-value=1.4e-07  Score=87.22  Aligned_cols=184  Identities=15%  Similarity=0.184  Sum_probs=115.5

Q ss_pred             cccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce
Q 022313           66 VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY  145 (299)
Q Consensus        66 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~  145 (299)
                      .-|.|+++.+.+|+.+++..-+|+--       -||+|.+|    +..|......       |...++.|++++.+++ .
T Consensus        89 ~~~~~a~~hl~~Va~GldS~V~GE~q-------I~gQvk~a----~~~a~~~~~~-------g~~l~~lf~~a~~~~k-~  149 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDSMVVGETQ-------ILGQVKNA----YKVAQEEKTV-------GKVLERLFQKAFSVGK-R  149 (417)
T ss_pred             cCchHHHHHHHHHHhhhhhhhcCChH-------HHHHHHHH----HHHHHHcCCc-------hHHHHHHHHHHHHHhh-h
Confidence            36889999999999988764444432       27777777    4455544332       4456788999988876 3


Q ss_pred             EEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhc
Q 022313          146 CYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLL  224 (299)
Q Consensus       146 ~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~  224 (299)
                      +..- ..++.   ..++.+..+.-.+...... .++++|+|+|+|.+|..+++.+...| .+|+++.++.++.+.+.+++
T Consensus       150 vr~~-t~i~~---~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~  224 (417)
T TIGR01035       150 VRTE-TDISA---GAVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL  224 (417)
T ss_pred             hhhh-cCCCC---CCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            3321 11111   1112222221122233333 67899999999999999999999999 48999999988877676778


Q ss_pred             CCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH---HHHHHhcccC---cEEEEEcCC
Q 022313          225 GADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF---DAYMSLLKVA---GVYVLVGFP  277 (299)
Q Consensus       225 g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~---~~~~~~l~~~---G~~v~~g~~  277 (299)
                      |... +..   +...+...++|+||.|++.+..+   ......+...   -.+++++.+
T Consensus       225 g~~~-i~~---~~l~~~l~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~P  279 (417)
T TIGR01035       225 GGEA-VKF---EDLEEYLAEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVP  279 (417)
T ss_pred             CCeE-eeH---HHHHHHHhhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7642 222   23334446899999999875422   2222222221   267788766

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02494 adenosylhomocysteinase

Probab=98.24  E-value=1.2e-05  Score=74.32  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             HHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccE
Q 022313          169 YTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       169 ~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      +.++.+. ...-.|++|+|+|.|.+|...++.++..|++|+++.+++.+..++ ...|...+ +      +.+.....|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv-~------leEal~~ADV  312 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVL-T------LEDVVSEADI  312 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeec-c------HHHHHhhCCE
Confidence            4555444 334689999999999999999999999999999999888766555 35666432 1      2233356899


Q ss_pred             EEEcCCCchh-HHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGDHP-FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++.|.... ....++.|++++.++.+|..
T Consensus       313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             EEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence            9999998774 47899999999999999985

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.24  E-value=5.2e-05  Score=66.63  Aligned_cols=99  Identities=20%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.+++++|+|.|.+|..+++.++..|++|+++.+++++.+++ .++|...+ .   .+.+.+...++|+|++++.....-
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-~~~g~~~~-~---~~~l~~~l~~aDiVint~P~~ii~  223 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-TEMGLIPF-P---LNKLEEKVAEIDIVINTIPALVLT  223 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeee-c---HHHHHHHhccCCEEEECCChHHhC
Confidence            467999999999999999999999999999999998877766 45665322 1   223444557899999999765433


Q ss_pred             HHHHHhcccCcEEEEEcCC-Cceee
Q 022313          259 DAYMSLLKVAGVYVLVGFP-SKVKF  282 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~-~~~~~  282 (299)
                      ...++.++++..+++++.. ...+|
T Consensus       224 ~~~l~~~k~~aliIDlas~Pg~tdf  248 (287)
T TIGR02853       224 ADVLSKLPKHAVIIDLASKPGGTDF  248 (287)
T ss_pred             HHHHhcCCCCeEEEEeCcCCCCCCH
Confidence            5577889999999999876 45444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.22  E-value=6.9e-06  Score=73.17  Aligned_cols=128  Identities=20%  Similarity=0.210  Sum_probs=87.3

Q ss_pred             eEEEcCCCCCcccccccchhhHHHHHHhhhccCC---CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Q 022313          145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN---QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA  220 (299)
Q Consensus       145 ~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~---~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~  220 (299)
                      ..+++|+.+..+.++... +...++.+++.....   -++.+|+|+|+|.+|..+++.++..|+ +|+++.++.++.+.+
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            466778888777776543 445555565544331   478999999999999999999998775 899999998888777


Q ss_pred             HHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh---HHHHHHhcc-cCcEEEEEcCC
Q 022313          221 LSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP---FDAYMSLLK-VAGVYVLVGFP  277 (299)
Q Consensus       221 ~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~---~~~~~~~l~-~~G~~v~~g~~  277 (299)
                      ++++|.. +++.   +...+.-...|+||.+++.+..   ....+.... ++-.+++++.+
T Consensus       219 a~~~g~~-~~~~---~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         219 AKELGGN-AVPL---DELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             HHHcCCe-EEeH---HHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            7888873 3332   2233334668999999998874   222222222 12256677776

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.14  E-value=2.2e-06  Score=82.68  Aligned_cols=97  Identities=20%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC---------------------chHHHHHHHhcCCCEEEeCCC-H
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS---------------------TSKKEEALSLLGADKFVVSSD-L  235 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~---------------------~~~~~~~~~~~g~~~v~~~~~-~  235 (299)
                      .++|++|+|+|+|+.|+.+++.++..|++|++++..                     +.+++.+ +++|++..++... .
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~-~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRI-LDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHH-HHCCCEEEeCCEECC
Confidence            478999999999999999999999999999998853                     2344555 5789876665432 1


Q ss_pred             H-HHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEc
Q 022313          236 E-QMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       236 ~-~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      + ...+...++|+||+++|........+......|.+..++
T Consensus       213 ~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~  253 (564)
T PRK12771        213 DITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVD  253 (564)
T ss_pred             cCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHH
Confidence            1 122334579999999997643332333334444444433

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.07  E-value=7.1e-06  Score=63.84  Aligned_cols=96  Identities=19%  Similarity=0.273  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      -++++++|+|+|+.|.+++..+...|+ +++++.|+.++.+.+.++++..  .++...+..   +....+|+|+++++..
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~---~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE---EALQEADIVINATPSG   86 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC---HHHHTESEEEE-SSTT
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH---HHHhhCCeEEEecCCC
Confidence            478999999999999999999999999 5999999999999988888532  233443322   2336799999998875


Q ss_pred             h--hHHHHHHhccc-CcEEEEEcCC
Q 022313          256 H--PFDAYMSLLKV-AGVYVLVGFP  277 (299)
Q Consensus       256 ~--~~~~~~~~l~~-~G~~v~~g~~  277 (299)
                      .  .....+....+ -+.+++++.+
T Consensus        87 ~~~i~~~~~~~~~~~~~~v~Dla~P  111 (135)
T PF01488_consen   87 MPIITEEMLKKASKKLRLVIDLAVP  111 (135)
T ss_dssp             STSSTHHHHTTTCHHCSEEEES-SS
T ss_pred             CcccCHHHHHHHHhhhhceeccccC
Confidence            3  22333333322 2588888876

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.05  E-value=6.4e-05  Score=69.73  Aligned_cols=123  Identities=14%  Similarity=0.198  Sum_probs=86.0

Q ss_pred             EEEcCCCCCccccc-ccchhhHHHHHHhh-hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh
Q 022313          146 CYKIANDYPLALAA-PLLCAGITVYTPMM-RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL  223 (299)
Q Consensus       146 ~~~~p~~~~~~~aa-~~~~~~~ta~~al~-~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~  223 (299)
                      ++.+|+...-..+- .+.+ ..+.+.++. .....-.|++|+|+|.|.+|...++.++..|++|+++.+++.+...+ ..
T Consensus       218 V~nv~d~~tk~~aD~~~G~-~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-~~  295 (476)
T PTZ00075        218 AINVNDSVTKSKFDNIYGC-RHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-AM  295 (476)
T ss_pred             EEEeCCcchHHHHHHHHHH-HHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-Hh
Confidence            55566654333222 1222 222234433 33344689999999999999999999999999999998877665454 34


Q ss_pred             cCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH-HHHHhcccCcEEEEEcCC
Q 022313          224 LGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD-AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       224 ~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~  277 (299)
                      .|+..+       .+.++....|+|+.++|....+. ..+..|++++.++.+|..
T Consensus       296 ~G~~~~-------~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        296 EGYQVV-------TLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cCceec-------cHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence            565322       13344568999999999877664 799999999999999876

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.01  E-value=9.5e-05  Score=63.79  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=82.7

Q ss_pred             ceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          135 YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       135 ~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      |.++.. +...++.+++++++..+..-... . ....+...  +.++++||-+|+|. |..++.+++ .|+ +|++++.+
T Consensus        79 ~~~~~~-~~~~~i~i~p~~afgtg~h~tt~-~-~l~~l~~~--~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis  151 (250)
T PRK00517         79 WEDPPD-PDEINIELDPGMAFGTGTHPTTR-L-CLEALEKL--VLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDID  151 (250)
T ss_pred             CcCCCC-CCeEEEEECCCCccCCCCCHHHH-H-HHHHHHhh--cCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECC
Confidence            444433 55678889988887765422211 1 12222222  36889999999987 888876555 566 69999999


Q ss_pred             chHHHHHHHhc---CC-CEEEeCCCHHHHHHhcCCccEEEEcCCCch---hHHHHHHhcccCcEEEEEcCC
Q 022313          214 TSKKEEALSLL---GA-DKFVVSSDLEQMKALGKSLDFIIDTASGDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       214 ~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +...+.+.+.+   +. +.+....       ....||+|+.+.....   .+..+.+.|+++|+++..|..
T Consensus       152 ~~~l~~A~~n~~~~~~~~~~~~~~-------~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        152 PQAVEAARENAELNGVELNVYLPQ-------GDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             HHHHHHHHHHHHHcCCCceEEEcc-------CCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            88887764433   22 1111000       0116999997766432   356778899999999999876

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.93  E-value=8.7e-05  Score=64.29  Aligned_cols=98  Identities=20%  Similarity=0.232  Sum_probs=81.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCC------
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTAS------  253 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g------  253 (299)
                      +..+|.|+|.|.+|.-++.+|..+|++|++.+.+.+|++++...|+.....-+.++..+.+.-.+.|++|.++=      
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka  246 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA  246 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence            44567888999999999999999999999999999999999877886645567777788887789999987542      


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .....+...+.|++++.++++..-
T Consensus       247 PkLvt~e~vk~MkpGsVivDVAiD  270 (371)
T COG0686         247 PKLVTREMVKQMKPGSVIVDVAID  270 (371)
T ss_pred             ceehhHHHHHhcCCCcEEEEEEEc
Confidence            233678889999999999988643

>PRK08324 short chain dehydrogenase; Validated

Probab=97.92  E-value=0.0001  Score=72.73  Aligned_cols=131  Identities=21%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             cceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhc--cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE
Q 022313          134 GYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRH--KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL  210 (299)
Q Consensus       134 ~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~--~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~  210 (299)
                      ++.+|..+++..++.+ +.++.+++.            +...  ....+++++||.|+ |++|...++.+...|++|+++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~------------l~~~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~  452 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAK------------LQRMPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLA  452 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhh------------hhcCCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEE
Confidence            3455666665555555 444444442            1111  11146799999997 999999999999999999999


Q ss_pred             eCCchHHHHHHHhcCC--C---EEEeCCCHHHHHHh-------cCCccEEEEcCCCc-----------------------
Q 022313          211 STSTSKKEEALSLLGA--D---KFVVSSDLEQMKAL-------GKSLDFIIDTASGD-----------------------  255 (299)
Q Consensus       211 ~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~-------~~~~d~v~d~~g~~-----------------------  255 (299)
                      +++.++.+.+.++++.  .   ...|..+.+.+.++       .+++|++|+++|..                       
T Consensus       453 ~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g  532 (681)
T PRK08324        453 DLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATG  532 (681)
T ss_pred             eCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHH
Confidence            9998887776555543  1   12244444443322       25899999999831                       


Q ss_pred             --hhHHHHHHhccc---CcEEEEEcCC
Q 022313          256 --HPFDAYMSLLKV---AGVYVLVGFP  277 (299)
Q Consensus       256 --~~~~~~~~~l~~---~G~~v~~g~~  277 (299)
                        ...+.+++.++.   +|+++.++..
T Consensus       533 ~~~l~~~~~~~l~~~~~~g~iV~vsS~  559 (681)
T PRK08324        533 HFLVAREAVRIMKAQGLGGSIVFIASK  559 (681)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEECCc
Confidence              124445666665   6899999876

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.85  E-value=0.00013  Score=61.31  Aligned_cols=75  Identities=20%  Similarity=0.260  Sum_probs=60.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC----CEEEeCCCHHHHHH----h---cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA----DKFVVSSDLEQMKA----L---GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~----~---~~~~d~  247 (299)
                      +++.++|.|+ +++|.+.++.....|++|+++.|..+++++++.+++.    ...+|-.+.+.+..    +   -+.+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            4578899998 8999999999999999999999999999999999983    22345555544222    2   378999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++++.|-
T Consensus        85 LvNNAGl   91 (246)
T COG4221          85 LVNNAGL   91 (246)
T ss_pred             EEecCCC
Confidence            9999993

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00017  Score=59.50  Aligned_cols=119  Identities=23%  Similarity=0.274  Sum_probs=79.7

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHhcCCCEE
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA---LSLLGADKF  229 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v  229 (299)
                      ++....-.++.+...| .+++... ++++++||-+|+|+ |+.++-+++..+ +|+.+.+.++-.+.+   .+.+|.+.|
T Consensus        47 lpi~~gqtis~P~~vA-~m~~~L~-~~~g~~VLEIGtGs-GY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV  122 (209)
T COG2518          47 LPIGCGQTISAPHMVA-RMLQLLE-LKPGDRVLEIGTGS-GYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENV  122 (209)
T ss_pred             ccCCCCceecCcHHHH-HHHHHhC-CCCCCeEEEECCCc-hHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCce
Confidence            3333333444343333 2344444 49999999999975 999999999888 999999887754444   256776443


Q ss_pred             EeCCCHHHHHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEE-c
Q 022313          230 VVSSDLEQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLV-G  275 (299)
Q Consensus       230 ~~~~~~~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~-g  275 (299)
                      .........-+. ..+||.|+-+.+.+..-...+++|+++|+++.. |
T Consensus       123 ~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         123 TVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            322211111111 268999999988888778999999999999865 5

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.82  E-value=0.00014  Score=63.47  Aligned_cols=100  Identities=19%  Similarity=0.295  Sum_probs=68.8

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHh---cCCCEEE-eCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSL---LGADKFV-VSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++++||.+|+|. |..+.++++..+.  +|++++.+++.++.+++.   .+.+.+- ...+.+.+....+.||+|+.
T Consensus        74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            358999999999987 8888888887765  799999998888777432   3432221 11111111111357999986


Q ss_pred             cC------CCchhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TA------SGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~------g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..      .....++.+.+.|+++|+++..+..
T Consensus       153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            53      2234688999999999999987655

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.82  E-value=0.00033  Score=57.62  Aligned_cols=108  Identities=21%  Similarity=0.160  Sum_probs=80.3

Q ss_pred             CCCCEEEEEcC--ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-CCEEEeCCCHHHHHHh--------cCCccE
Q 022313          179 QPGKSLGVIGL--GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-ADKFVVSSDLEQMKAL--------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~--g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~--------~~~~d~  247 (299)
                      ...+.|||.|+  |++|.+.+.-..+.|+.|+++.|.-+...++..++| ...-++..+++.+.+.        .++.|+
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            45678999875  899999999999999999999999999999976888 3334455555554433        267899


Q ss_pred             EEEcCCCch--------------------------hHHHHHHhcccCcEEEEEcCC-CceeeChhh
Q 022313          248 IIDTASGDH--------------------------PFDAYMSLLKVAGVYVLVGFP-SKVKFSPAS  286 (299)
Q Consensus       248 v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~  286 (299)
                      .++++|.+-                          +-.-.....+..|+++.+|+. ..+++++..
T Consensus        85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~  150 (289)
T KOG1209|consen   85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGS  150 (289)
T ss_pred             EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhh
Confidence            999888431                          111123466788999999999 777777753

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.76  E-value=0.00065  Score=63.19  Aligned_cols=181  Identities=18%  Similarity=0.193  Sum_probs=108.8

Q ss_pred             cccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce
Q 022313           66 VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY  145 (299)
Q Consensus        66 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~  145 (299)
                      .-|+|+++.+.+|+.+++..-+|+.-+          |.+|+ ..+..|......       |...++.|++.+.+++  
T Consensus        91 ~~g~ea~~hl~~V~~GldS~V~GE~qI----------lgQvk-~a~~~a~~~g~~-------g~~l~~lf~~a~~~~k--  150 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDSMVLGEPQI----------LGQVK-DAYALAQEAGTV-------GTILNRLFQKAFSVAK--  150 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhcCChHH----------HHHHH-HHHHHHHHcCCc-------hHHHHHHHHHHHHHHh--
Confidence            369999999999999888755555421          23333 222233322211       3344566666554443  


Q ss_pred             EEEcCCCCCcccccccchhhHHHHHHhhhccC---CCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHH
Q 022313          146 CYKIANDYPLALAAPLLCAGITVYTPMMRHKM---NQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEAL  221 (299)
Q Consensus       146 ~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~---~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~  221 (299)
                            .+..+.+. ...+...++.+++....   -.++++|+|+|+|.+|.++++.++..|+ +|+++.++.++.+.+.
T Consensus       151 ------~v~~~t~i-~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la  223 (423)
T PRK00045        151 ------RVRTETGI-GAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELA  223 (423)
T ss_pred             ------hHhhhcCC-CCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence                  22211111 11123333444443321   1578999999999999999999999998 8999999988887776


Q ss_pred             HhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH---HHHHHhcc----cCcEEEEEcCC
Q 022313          222 SLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF---DAYMSLLK----VAGVYVLVGFP  277 (299)
Q Consensus       222 ~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~---~~~~~~l~----~~G~~v~~g~~  277 (299)
                      +++|.+ +++.   +...+...++|+||++++.+..+   ...-..++    ..-.+++++.+
T Consensus       224 ~~~g~~-~~~~---~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~P  282 (423)
T PRK00045        224 EEFGGE-AIPL---DELPEALAEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVP  282 (423)
T ss_pred             HHcCCc-EeeH---HHHHHHhccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence            788864 3332   23333346899999999975422   12222221    12356778776

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.65  E-value=0.00043  Score=62.82  Aligned_cols=96  Identities=25%  Similarity=0.292  Sum_probs=75.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC---CCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG---ADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      .+|||+|+|.+|+.+++.+.+.+ .+|++.+|+.++.+++....+   -...++-.+.+.+.++-+++|+||++......
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            47999999999999999988888 699999999999888854432   23455666777777777888999999998875


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...+-.|++.+=.++++...
T Consensus        82 ~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          82 LTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             HHHHHHHHHhCCCEEEcccC
Confidence            65555677777777777655

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.54  E-value=0.00095  Score=54.31  Aligned_cols=91  Identities=27%  Similarity=0.209  Sum_probs=68.2

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCC----chh
Q 022313          184 LGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASG----DHP  257 (299)
Q Consensus       184 vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~----~~~  257 (299)
                      |+|+|+ |.+|...++.+...|.+|++++|++++.+.   ..+.+.+. +..+.+.+.+.-.++|.||.+++.    ...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~   77 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDA   77 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccc
Confidence            689998 999999999999999999999999987765   33444332 455666677666799999999984    223


Q ss_pred             HHHHHHhcccCc--EEEEEcCC
Q 022313          258 FDAYMSLLKVAG--VYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G--~~v~~g~~  277 (299)
                      ....++.++..|  +++.++..
T Consensus        78 ~~~~~~a~~~~~~~~~v~~s~~   99 (183)
T PF13460_consen   78 AKNIIEAAKKAGVKRVVYLSSA   99 (183)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEET
T ss_pred             cccccccccccccccceeeecc
Confidence            556666665554  77777655

...

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.54  E-value=0.0021  Score=53.36  Aligned_cols=97  Identities=16%  Similarity=0.198  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHH---HhcC-CCE--EEeCCCHHHHHHhcCCccEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEAL---SLLG-ADK--FVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~---~~~g-~~~--v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .+.++++|+-+|+|. |..++.+++..+  .+|++++.+++..+.++   ++++ .+.  ++..+..+.+......+|.|
T Consensus        37 ~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         37 RLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence            348999999999987 888888888764  48999999988776553   3455 232  33333333344455789999


Q ss_pred             EEcCCC---chhHHHHHHhcccCcEEEEE
Q 022313          249 IDTASG---DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       249 ~d~~g~---~~~~~~~~~~l~~~G~~v~~  274 (299)
                      |...+.   ...+..+.+.|+++|+++..
T Consensus       116 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        116 FIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             EECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            986543   23477788899999999863

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.53  E-value=0.0014  Score=62.49  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--------CC-----CEE--EeCCCHHHHHHh
Q 022313          178 NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL--------GA-----DKF--VVSSDLEQMKAL  241 (299)
Q Consensus       178 ~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~--------g~-----~~v--~~~~~~~~~~~~  241 (299)
                      .+.++++||+|+ |.+|...++.+...|++|++++|+.++.+.+.+++        |.     ..+  .+..+.+.+.+.
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            478999999998 99999999999999999999999988776553321        21     112  245555566555


Q ss_pred             cCCccEEEEcCCCch---------------hHHHHHHhccc--CcEEEEEcCC
Q 022313          242 GKSLDFIIDTASGDH---------------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~~~---------------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      -+++|+||.++|...               ....+++.+..  .++||.++..
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi  209 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL  209 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence            578999999988531               12223344333  3689988776

>PRK12742 oxidoreductase; Provisional

Probab=97.53  E-value=0.0019  Score=54.71  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=66.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhcCCCEE-EeCCCHHHHHHh---cCCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLLGADKF-VVSSDLEQMKAL---GKSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~---~~~~d~v~d~~g  253 (299)
                      +++++||.|+ |++|...++.+...|++|+++.+ ++++.+++.++++...+ .|..+.+.+.+.   .+++|+++++.|
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag   84 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAG   84 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCC
Confidence            4689999998 99999999999999999888765 44555555455665433 244444443332   256899999987


Q ss_pred             Cch-------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          254 GDH-------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...                         ....+++.++.+|+++.++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  133 (237)
T PRK12742         85 IAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSV  133 (237)
T ss_pred             CCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            421                         012344556678899988776

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.53  E-value=0.0014  Score=55.59  Aligned_cols=98  Identities=27%  Similarity=0.333  Sum_probs=68.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.++.   +.-+.+  |..+.+.+.++       .+++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4689999998 89999999999999999999999988776653333   222222  33344333221       25689


Q ss_pred             EEEEcCCCch-----------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGDH-----------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~-----------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .++.+.+...                       ..+..++.++++|+++.++..
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            9999887421                       144555667778999998876

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.51  E-value=0.00096  Score=49.58  Aligned_cols=93  Identities=24%  Similarity=0.314  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-HCCCeEEEEeCCchHHHHHHHhc---C-CC--EEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGK-AFGLNVTVLSTSTSKKEEALSLL---G-AD--KFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~-~~g~~v~~~~~~~~~~~~~~~~~---g-~~--~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      |+++||-+|+|. |..++.+++ ..+++|+.++.+++-.+.+.+..   + .+  .++..+- ........+||+|+...
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence            678999999875 777778887 46889999999999888886666   2 12  2233222 22223346899999877


Q ss_pred             -CCc---------hhHHHHHHhcccCcEEEEE
Q 022313          253 -SGD---------HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       253 -g~~---------~~~~~~~~~l~~~G~~v~~  274 (299)
                       ...         ..++.+.+.|+|+|+++..
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence             221         1367888999999998753

...

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.46  E-value=0.0019  Score=52.03  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=67.9

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCCh-HHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGG-LGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~-~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ...||...++...++....--.+++++|+|+|. +|..++..++..|++|+++.++.+++..                  
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~------------------   83 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKE------------------   83 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHH------------------
Confidence            445555555555555554336889999999986 6998999999999999988887433222                  


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                         .-..+|+||.+++.+..+..  +.++++-.+++++.+
T Consensus        84 ---~l~~aDiVIsat~~~~ii~~--~~~~~~~viIDla~p  118 (168)
T cd01080          84 ---HTKQADIVIVAVGKPGLVKG--DMVKPGAVVIDVGIN  118 (168)
T ss_pred             ---HHhhCCEEEEcCCCCceecH--HHccCCeEEEEccCC
Confidence               22568888988888663333  356777778888877

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.44  E-value=0.0034  Score=51.83  Aligned_cols=99  Identities=20%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC----CCE-EEeCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG----ADK-FVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g----~~~-v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      -++.+++|+|+ |.+|..++..+...|++|+++.|+.++.+.+.+++.    ... ..+..+.+.+.+.-.+.|+||.++
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            46789999997 999999888888889999999999887777655442    221 223444455555557899999988


Q ss_pred             CCchhHHHHH-HhcccCcEEEEEcCC
Q 022313          253 SGDHPFDAYM-SLLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~~~~~~~~-~~l~~~G~~v~~g~~  277 (299)
                      .......... ...+++-.++++..+
T Consensus       106 ~~g~~~~~~~~~~~~~~~vv~D~~~~  131 (194)
T cd01078         106 AAGVELLEKLAWAPKPLAVAADVNAV  131 (194)
T ss_pred             CCCceechhhhcccCceeEEEEccCC
Confidence            7654111112 233333346666555

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.44  E-value=0.00088  Score=57.73  Aligned_cols=76  Identities=24%  Similarity=0.310  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-----EEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-----KFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-----~v~--~~~~~~~~~~~-------~~  243 (299)
                      ..+++++|.|+ +++|...+..+...|.+++++.|++++++++++++.-.     +++  |..+.+.+..+       ..
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            56789999998 89999999999999999999999999999887766521     233  33344443332       24


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      .+|+.++++|-
T Consensus        84 ~IdvLVNNAG~   94 (265)
T COG0300          84 PIDVLVNNAGF   94 (265)
T ss_pred             cccEEEECCCc
Confidence            79999999993

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.44  E-value=0.00089  Score=54.86  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC--CCEEEeCCCHHHHH----Hh---cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG--ADKFVVSSDLEQMK----AL---GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~----~~---~~~~d~v~  249 (299)
                      -|.+|||.|+ +++|+..++-...+|-+||+..|+++++++++....  ...+.+-.|.+..+    ++   ....++++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli   83 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLI   83 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheee
Confidence            4789999976 899999999999999999999999999999976665  34455555544333    33   24578888


Q ss_pred             EcCC
Q 022313          250 DTAS  253 (299)
Q Consensus       250 d~~g  253 (299)
                      +++|
T Consensus        84 NNAG   87 (245)
T COG3967          84 NNAG   87 (245)
T ss_pred             eccc
Confidence            8888

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.41  E-value=0.0015  Score=51.67  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=70.9

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHhcCCccE
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~  247 (299)
                      .+++....-.++++++|+|+|.+|...++.+...| .+|++++++.++.+.+.++++... .....   ...+..+++|+
T Consensus         8 ~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv   84 (155)
T cd01065           8 RALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL---DLEELLAEADL   84 (155)
T ss_pred             HHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec---chhhccccCCE
Confidence            34444332255788999999999999999988886 689999999888877766766431 01111   12233478999


Q ss_pred             EEEcCCCchh----HHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGDHP----FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~~----~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+.+++....    .......++++..+++++..
T Consensus        85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            9999887541    11223456788888888665

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.40  E-value=0.0024  Score=50.79  Aligned_cols=106  Identities=16%  Similarity=0.237  Sum_probs=70.4

Q ss_pred             HHHhh-hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccE
Q 022313          169 YTPMM-RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       169 ~~al~-~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      +.++. ....+-.|++++|+|-|-+|...++.++.+|++|++++.++-+.-++. .-|.+..       .+.+.....|+
T Consensus        10 ~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~v~-------~~~~a~~~adi   81 (162)
T PF00670_consen   10 VDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFEVM-------TLEEALRDADI   81 (162)
T ss_dssp             HHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-EEE--------HHHHTTT-SE
T ss_pred             HHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcEec-------CHHHHHhhCCE
Confidence            33443 334457899999999999999999999999999999999987776662 3454322       34455678999


Q ss_pred             EEEcCCCchh-HHHHHHhcccCcEEEEEcCC-Cceee
Q 022313          248 IIDTASGDHP-FDAYMSLLKVAGVYVLVGFP-SKVKF  282 (299)
Q Consensus       248 v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~-~~~~~  282 (299)
                      ++-++|.... ...-++.|+++..+..+|.. ...++
T Consensus        82 ~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~  118 (162)
T PF00670_consen   82 FVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDV  118 (162)
T ss_dssp             EEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred             EEECCCCccccCHHHHHHhcCCeEEeccCcCceeEee
Confidence            9999998774 45778899988888887766 44433

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.39  E-value=0.0006  Score=55.64  Aligned_cols=90  Identities=24%  Similarity=0.318  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCc---
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGD---  255 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~---  255 (299)
                      -.|++|.|+|.|.+|...++.++.+|.+|+++++........ ...+..    ..   .+.++-...|+|+.+....   
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~~----~~---~l~ell~~aDiv~~~~plt~~T  105 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGVE----YV---SLDELLAQADIVSLHLPLTPET  105 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTEE----ES---SHHHHHHH-SEEEE-SSSSTTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-ccccce----ee---ehhhhcchhhhhhhhhcccccc
Confidence            578999999999999999999999999999999998766533 344431    11   1222334467777766631   


Q ss_pred             --hhHHHHHHhcccCcEEEEEcC
Q 022313          256 --HPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       256 --~~~~~~~~~l~~~G~~v~~g~  276 (299)
                        ..-...+..|+++..+|.++-
T Consensus       106 ~~li~~~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  106 RGLINAEFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             TTSBSHHHHHTSTTTEEEEESSS
T ss_pred             ceeeeeeeeeccccceEEEeccc
Confidence              124456677777777776653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.38  E-value=0.0018  Score=56.83  Aligned_cols=77  Identities=22%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      .++++++|+|+|+.+.+++..+...|+ +++++.|+.++.+.+.++++.. .+......+.+......+|+|++++...
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            357899999999999999999999998 8999999999888887776532 1111111112223336799999998753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0043  Score=53.62  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=68.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      ++++++|.|+ |++|...++.+...|++|++++++.++.+++.++++.. .+  .|..+.+.+.++       .+.+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4679999998 89999999999999999999999988777776666532 12  244444443322       2578999


Q ss_pred             EEcCCCch------------------------hHHHHHHhc-ccCcEEEEEcCC
Q 022313          249 IDTASGDH------------------------PFDAYMSLL-KVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~------------------------~~~~~~~~l-~~~G~~v~~g~~  277 (299)
                      +.+.|...                        ..+.+++.+ +.+|+++.++..
T Consensus        85 v~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~  138 (261)
T PRK08265         85 VNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSI  138 (261)
T ss_pred             EECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECch
Confidence            99987410                        122333444 567899988765

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.35  E-value=0.0024  Score=55.72  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=73.8

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++....--.|++++|+|.| .+|.-++.++...|++|+++.+....                     
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~---------------------  194 (286)
T PRK14175        136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKD---------------------  194 (286)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh---------------------
Confidence            35677777777777766544689999999996 59999999999999999988764322                     


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.+..+.+|+||.++|.+..+..  +.++++..++++|..
T Consensus       195 l~~~~~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~  232 (286)
T PRK14175        195 MASYLKDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNT  232 (286)
T ss_pred             HHHHHhhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCC
Confidence            22334678999999998864544  468999999999987

>PRK06182 short chain dehydrogenase; Validated

Probab=97.32  E-value=0.0032  Score=54.73  Aligned_cols=74  Identities=23%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++++.+.+. ..+...+ .|..+.+.+.++       .+++|+++.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4678999998 89999999999989999999999988776663 3343322 355555444332       258999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9984

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.30  E-value=0.004  Score=57.56  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -++++++|+|+|.+|.+++..+...|+ +++++.|+.++.+.+.++++...++..   +.+.+.-..+|+||.|++.+..
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~---~~l~~~l~~aDiVI~aT~a~~~  255 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL---SELPQLIKKADIIIAAVNVLEY  255 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH---HHHHHHhccCCEEEECcCCCCe
Confidence            467899999999999999999999997 899999999888888777763223322   2333344679999999998763


Q ss_pred             HHHHHHhcccCc-EEEEEcCC
Q 022313          258 FDAYMSLLKVAG-VYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G-~~v~~g~~  277 (299)
                      +-. .+.++... .+++++.+
T Consensus       256 vi~-~~~~~~~~~~~iDLavP  275 (414)
T PRK13940        256 IVT-CKYVGDKPRVFIDISIP  275 (414)
T ss_pred             eEC-HHHhCCCCeEEEEeCCC
Confidence            211 12222222 46788887

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0057  Score=53.19  Aligned_cols=72  Identities=21%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEEEcC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFIIDTA  252 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~d~~  252 (299)
                      +++||.|+ |++|...++.+...|++|++++++.++.+.+ ...+...+ .|..+.+.+.++       .+++|+++++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL-AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            47899998 9999999999999999999999998777766 34454333 355555444332       25799999999


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      |.
T Consensus        81 g~   82 (274)
T PRK05693         81 GY   82 (274)
T ss_pred             CC
Confidence            83

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.28  E-value=0.0047  Score=54.44  Aligned_cols=96  Identities=18%  Similarity=0.222  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc---CCC-EEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL---GAD-KFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      +++++||-+|+|. |..++.+++ .|+ +|++++.++...+.+++..   +.. .+..... .......++||+|+.+..
T Consensus       158 ~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~~~~~~~~~fDlVvan~~  234 (288)
T TIGR00406       158 LKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-YLEQPIEGKADVIVANIL  234 (288)
T ss_pred             CCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-ccccccCCCceEEEEecC
Confidence            6789999999987 877777665 465 8999999988777664332   221 1111110 011112368999998665


Q ss_pred             Cc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          254 GD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..   ..+..+.+.|+++|.++..|..
T Consensus       235 ~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       235 AEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            43   2356677999999999998876

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0061  Score=53.18  Aligned_cols=73  Identities=19%  Similarity=0.275  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh--------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL--------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~--------~~~~d~v~  249 (299)
                      .+++++|.|+ |++|...++.+...|++|++++++++..+.+. +.+.+.+ .|..+.+.+..+        .+.+|+++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4678999998 99999999999889999999999988887773 4454333 344454433221        25789999


Q ss_pred             EcCC
Q 022313          250 DTAS  253 (299)
Q Consensus       250 d~~g  253 (299)
                      ++.|
T Consensus        82 ~~Ag   85 (277)
T PRK05993         82 NNGA   85 (277)
T ss_pred             ECCC
Confidence            9886

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.27  E-value=0.0073  Score=48.97  Aligned_cols=98  Identities=24%  Similarity=0.289  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHH---HHhcCCC--EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEA---LSLLGAD--KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~---~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +++++.++=+|+|. |..+++++... ..+|++++++++..+..   +++||.+  +++..+.++.+..+. .+|.+|--
T Consensus        32 ~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIG  109 (187)
T COG2242          32 PRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIG  109 (187)
T ss_pred             CCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEEC
Confidence            38888666678853 55666777433 34999999998876543   4678866  455555566555443 79999965


Q ss_pred             CCC--chhHHHHHHhcccCcEEEEEcCC
Q 022313          252 ASG--DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~--~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      -|+  ...++.++..|+++|++|.-...
T Consensus       110 Gg~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242         110 GGGNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             CCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            553  23688999999999999987766

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.25  E-value=0.0027  Score=55.19  Aligned_cols=107  Identities=19%  Similarity=0.193  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCE-EE----eCCCHHHHHH----h---c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADK-FV----VSSDLEQMKA----L---G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~-v~----~~~~~~~~~~----~---~  242 (299)
                      -.+++|+|.|+ +++|...+.-....|++++.+++..++++...   ++.+..+ ++    |-.+.+..+.    +   -
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            36789999998 89999988888889999888888877766552   2333222 22    3333333332    1   2


Q ss_pred             CCccEEEEcCCCc-------------------------hhHHHHHHhcccC--cEEEEEcCC-CceeeChh
Q 022313          243 KSLDFIIDTASGD-------------------------HPFDAYMSLLKVA--GVYVLVGFP-SKVKFSPA  285 (299)
Q Consensus       243 ~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~--G~~v~~g~~-~~~~~~~~  285 (299)
                      +++|+.+++.|-.                         .+.+.++..|++.  |+|+.+.+. +...+|..
T Consensus        90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~  160 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR  160 (282)
T ss_pred             CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc
Confidence            7899999999821                         2355666666665  999999888 55555554

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.24  E-value=0.0054  Score=56.13  Aligned_cols=95  Identities=25%  Similarity=0.365  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      -+++++||+|+|-+|..++..+...|. ++++..|+.++.+++++++|+..+ .   .+.+...-..+|+||-+++.+. 
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~-~---l~el~~~l~~~DvVissTsa~~~  251 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV-A---LEELLEALAEADVVISSTSAPHP  251 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee-c---HHHHHHhhhhCCEEEEecCCCcc
Confidence            478999999999999999999999996 999999999999999899995433 2   2233333478999999999765 


Q ss_pred             --hHHHHHHhcccCc--EEEEEcCC
Q 022313          257 --PFDAYMSLLKVAG--VYVLVGFP  277 (299)
Q Consensus       257 --~~~~~~~~l~~~G--~~v~~g~~  277 (299)
                        ......+.++..-  -+++++.+
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCC
Confidence              2334445554443  46788888

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.23  E-value=0.0036  Score=55.18  Aligned_cols=98  Identities=19%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCc---hHHHHHHHhcCC---C---EEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTST---SKKEEALSLLGA---D---KFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~---~~~~~~~~~~g~---~---~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++++|+|+|++|.+++..+...|+ +|+++.|+.   ++.+.+.+++..   .   ...+..+.+.+.+.-..+|++
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil  203 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL  203 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence            467899999999999999998888999 499999986   555555444421   1   112333333333333567999


Q ss_pred             EEcCCCch-----hHHH-HHHhcccCcEEEEEcC
Q 022313          249 IDTASGDH-----PFDA-YMSLLKVAGVYVLVGF  276 (299)
Q Consensus       249 ~d~~g~~~-----~~~~-~~~~l~~~G~~v~~g~  276 (299)
                      ++++.-..     .... ....+.++..++++-.
T Consensus       204 INaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY  237 (289)
T PRK12548        204 VNATLVGMKPNDGETNIKDTSVFRKDLVVADTVY  237 (289)
T ss_pred             EEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecC
Confidence            99885211     0000 1245666666666633

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.21  E-value=0.0019  Score=58.01  Aligned_cols=105  Identities=17%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             hhccCCCCCCEEEEEcCChHHHHHHHHHH-HCCC-eEEEEeCCchHHHHHHHhc----CCCEEEeCCCHHHHHHhcCCcc
Q 022313          173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGK-AFGL-NVTVLSTSTSKKEEALSLL----GADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~g~~G~~a~~~a~-~~g~-~v~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      +...+ +..++++|+|+|..|...+..+. ..+. +|.+..+++++.+.+.+++    +.+ +....+   ..+.....|
T Consensus       120 ~~la~-~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~~---~~~~~~~aD  194 (325)
T PRK08618        120 KYLAR-EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVNS---ADEAIEEAD  194 (325)
T ss_pred             HHhcC-CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeCC---HHHHHhcCC
Confidence            33444 56788999999999987775543 4566 8999999988887776544    432 222332   223336799


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeCh
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSP  284 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~  284 (299)
                      +|+.+++....+- . ..++++-.++.+|..  ....++.
T Consensus       195 iVi~aT~s~~p~i-~-~~l~~G~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        195 IIVTVTNAKTPVF-S-EKLKKGVHINAVGSFMPDMQELPS  232 (325)
T ss_pred             EEEEccCCCCcch-H-HhcCCCcEEEecCCCCcccccCCH
Confidence            9999999876333 3 899999999999987  4444554

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.21  E-value=0.0018  Score=56.85  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC----CCEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG----ADKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      .++++|+|+|+|+.|.+++..+...|+ +++++.|+.++.+.+.++++    ...+....+   +.+....+|+|++++.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~---~~~~~~~aDiVInaTp  201 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSD---LAAALAAADGLVHATP  201 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccc---hHhhhCCCCEEEECCc
Confidence            456899999999999999999999998 89999999998888766653    122222221   2222367999999954


Q ss_pred             Cc--hh--HHHHHHhcccCcEEEEEc
Q 022313          254 GD--HP--FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       254 ~~--~~--~~~~~~~l~~~G~~v~~g  275 (299)
                      ..  ..  ..-....++++..++++-
T Consensus       202 ~Gm~~~~~~~~~~~~l~~~~~v~Div  227 (284)
T PRK12549        202 TGMAKHPGLPLPAELLRPGLWVADIV  227 (284)
T ss_pred             CCCCCCCCCCCCHHHcCCCcEEEEee
Confidence            21  10  011124566666666553

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.19  E-value=0.001  Score=53.75  Aligned_cols=96  Identities=21%  Similarity=0.262  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC-------------------CC-HHHHH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS-------------------SD-LEQMK  239 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~-------------------~~-~~~~~  239 (299)
                      +..+|+|+|+|.+|+.|+.+++.+|+++++.+...++.++. +..+...+...                   .. ...+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL-ESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH-HHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh-hcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            44789999999999999999999999999999998888877 56665433321                   10 11222


Q ss_pred             HhcCCccEEEEcC--CC----chhHHHHHHhcccCcEEEEEcC
Q 022313          240 ALGKSLDFIIDTA--SG----DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       240 ~~~~~~d~v~d~~--g~----~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      +....+|+++.+.  .+    ....+..++.|+++..++++.-
T Consensus        98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence            2336789988522  12    2246778899999999998843

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0026  Score=55.60  Aligned_cols=103  Identities=20%  Similarity=0.260  Sum_probs=67.0

Q ss_pred             HHHHhhhcc--CCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCE----EEeCCCHHHHHH
Q 022313          168 VYTPMMRHK--MNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADK----FVVSSDLEQMKA  240 (299)
Q Consensus       168 a~~al~~~~--~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~----v~~~~~~~~~~~  240 (299)
                      .+.+|....  ...++++++|+|+|+.+.+++..+...|+ +++++.|+.++.+++++.++...    .....+.+   .
T Consensus       111 ~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~---~  187 (283)
T COG0169         111 FLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLE---G  187 (283)
T ss_pred             HHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccc---c
Confidence            344555432  23468999999999999999999999996 89999999999998877776321    11111111   1


Q ss_pred             hcCCccEEEEcCCCchhHH-----HHHHhcccCcEEEEE
Q 022313          241 LGKSLDFIIDTASGDHPFD-----AYMSLLKVAGVYVLV  274 (299)
Q Consensus       241 ~~~~~d~v~d~~g~~~~~~-----~~~~~l~~~G~~v~~  274 (299)
                      . ..+|++++++.-...-.     .....+++.-.+.++
T Consensus       188 ~-~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~  225 (283)
T COG0169         188 L-EEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDV  225 (283)
T ss_pred             c-cccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEe
Confidence            1 15899999877321000     014556666666555

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0038  Score=55.10  Aligned_cols=75  Identities=21%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--CEE---EeCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--DKF---VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~~v---~~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++.  ...   .|..+.+.+.++       .+++|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999998 8999999999999999999999998888877666652  111   344454443332       26799


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++++.|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99999984

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.17  E-value=0.0028  Score=55.56  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      ..+++++|+|+|++|.+++..+...| .+|+++.|+.++.+.+.++++....+... . ...+....+|+|++++.....
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~-~-~~~~~~~~~DivInaTp~g~~  198 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELD-L-ELQEELADFDLIINATSAGMS  198 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeec-c-cchhccccCCEEEECCcCCCC
Confidence            56788999999999999999999999 59999999999888876666532101110 0 111233679999999875320


Q ss_pred             -----HHHHHHhcccCcEEEEEcC
Q 022313          258 -----FDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       258 -----~~~~~~~l~~~G~~v~~g~  276 (299)
                           .......++++..++++-.
T Consensus       199 ~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        199 GELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEeec
Confidence                 0122356777777777743

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.17  E-value=0.00074  Score=63.69  Aligned_cols=77  Identities=18%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch---------------------HHHHHHHhcCCCEEEeCCCHH-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS---------------------KKEEALSLLGADKFVVSSDLE-  236 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~---------------------~~~~~~~~~g~~~v~~~~~~~-  236 (299)
                      ..+++|+|+|+|+.|+.++..++..|.+|+++...+.                     ..+.+ +++|.+..++..... 
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~-~~~Gv~~~~~~~v~~~  217 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIF-TAMGIEFHLNCEVGRD  217 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHH-HHCCCEEECCCEeCCc
Confidence            3678999999999999999999999999999886642                     23444 678876555432111 


Q ss_pred             -HHHHhcCCccEEEEcCCCch
Q 022313          237 -QMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       237 -~~~~~~~~~d~v~d~~g~~~  256 (299)
                       .+.....++|.||.++|...
T Consensus       218 ~~~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       218 ISLDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             cCHHHHHhcCCEEEEEeCCCC
Confidence             12223357999999999753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.008  Score=54.14  Aligned_cols=98  Identities=17%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++++.+.+.++   .|.+..   .|..+.+.+.++       .+++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            4678999998 9999999999999999999999998776655433   343221   244455444332       2579


Q ss_pred             cEEEEcCCCch-------------------------hHHHHHHhccc--CcEEEEEcCC
Q 022313          246 DFIIDTASGDH-------------------------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      |+++++.|...                         ..+.+++.+++  .|+++.++..
T Consensus        87 D~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~  145 (334)
T PRK07109         87 DTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSA  145 (334)
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            99999988421                         12234555544  5899998876

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.15  E-value=0.0071  Score=55.49  Aligned_cols=112  Identities=21%  Similarity=0.242  Sum_probs=75.2

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~  238 (299)
                      .+..+..+.+..+.....++++.+||-+|+| .|..+..+++..|++|+.++.+++..+.+.+......+ +...+   .
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D---~  222 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQD---Y  222 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECc---h
Confidence            4444455555555444455899999999986 47778888888899999999999988888554421111 11111   2


Q ss_pred             HHhcCCccEEEEc-----CCC---chhHHHHHHhcccCcEEEEEc
Q 022313          239 KALGKSLDFIIDT-----ASG---DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       239 ~~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .++.+.||.|+..     ++.   ...++.+.+.|+|+|+++...
T Consensus       223 ~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        223 RDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             hhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            2234679998643     333   234788889999999998753

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.14  E-value=0.0029  Score=58.19  Aligned_cols=92  Identities=22%  Similarity=0.175  Sum_probs=66.0

Q ss_pred             EEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcC----CCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLG----ADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      |+|+|+|.+|..+++.+....-  +|++.+++.++.+.+.+++.    ....++..+.+.+.++-++.|+|++|+|....
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~   80 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG   80 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh
Confidence            6889999999999999997764  89999999999888765432    12334666666777777888999999998754


Q ss_pred             HHHHHHhcccCcEEEEEc
Q 022313          258 FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g  275 (299)
                      ...+..|++.+-.+++..
T Consensus        81 ~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   81 EPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             HHHHHHHHHHT-EEEESS
T ss_pred             HHHHHHHHHhCCCeeccc
Confidence            556667788888888843

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0092  Score=51.69  Aligned_cols=98  Identities=15%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCC-EE--EeCCCHHHHHHh------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GAD-KF--VVSSDLEQMKAL------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~------~~~~  245 (299)
                      +++++||.|+ +++|.+.++.+...|++|+++++++++.+.+.+++    +.. ..  .|..+.+.+.++      .+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            5788999998 89999999999999999999999988776654443    321 12  244444433322      1578


Q ss_pred             cEEEEcCCCch-------------------------hHHHHHHhccc--CcEEEEEcCC
Q 022313          246 DFIIDTASGDH-------------------------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      |+++.+.|...                         ..+.+++.++.  .|+++.++..
T Consensus        87 D~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~  145 (263)
T PRK08339         87 DIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSV  145 (263)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence            99999987420                         13445555543  4899988776

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.14  E-value=0.005  Score=54.04  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC----CCEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG----ADKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      .++++++|+|+|+.+.+++..+...|+ +++++.|+.++.+.+.+++.    ...+. ..+.....+....+|+|++++.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhcCEEEEcCC
Confidence            457899999999999999999988998 89999999988888766553    11121 1121112222356899999876

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.12  E-value=0.014  Score=43.85  Aligned_cols=97  Identities=20%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHH---hcCCC--EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALS---LLGAD--KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +.++++|+-+|+|. |..+..+++..+ .+++.++.++...+.+.+   .++..  .++..+.........+.+|+|+..
T Consensus        17 ~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        17 LRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence            36778888899976 888888888765 599999999887766532   33432  222222111122233689999975


Q ss_pred             CCCc---hhHHHHHHhcccCcEEEEEc
Q 022313          252 ASGD---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       252 ~g~~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ....   ..++.+.+.|+++|+++...
T Consensus        96 ~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            5432   25788999999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.09  E-value=0.011  Score=55.37  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc--hHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST--SKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~--~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++..  +..+.+.++++...+ .|..+.+.+.++       .+++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            5789999998 9999999999999999999988743  344455455664332 355554443332       2478999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      |.+.|.
T Consensus       289 i~~AG~  294 (450)
T PRK08261        289 VHNAGI  294 (450)
T ss_pred             EECCCc
Confidence            999983

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0077  Score=51.33  Aligned_cols=75  Identities=21%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...+..+...|++|+++++++++.+.+.+++   +.. .+  .|..+.+.+.++       .+++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999998 99999999999999999999998877666553332   322 12  244454444332       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999985

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.08  E-value=0.0017  Score=54.37  Aligned_cols=95  Identities=28%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHH---hcCCCE--EEeCCCHHHHHHhcCCccEEEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALS---LLGADK--FVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      +++|++||-+|+|. |+.++-+++..|.  +|+.+.+.++-.+.+.+   +++.+.  ++..+....+. ...+||.|+-
T Consensus        70 l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~apfD~I~v  147 (209)
T PF01135_consen   70 LKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAPFDRIIV  147 (209)
T ss_dssp             C-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-SEEEEEE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCCcCEEEE
Confidence            59999999999874 8888888887775  68888888775555433   345432  22222111111 1368999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEE
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +.+-...-...+++|+++|+++..
T Consensus       148 ~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  148 TAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             SSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             eeccchHHHHHHHhcCCCcEEEEE
Confidence            888777678899999999999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0052  Score=52.26  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh---cCCccEEEEcCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL---GKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~---~~~~d~v~d~~g  253 (299)
                      .++++++|.|+ |.+|...++.+...|++|+++++++++.+++.++.+...+ .+..+.+.+.+.   .+++|++|.+.|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag   86 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG   86 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            35688999998 8999999999999999999999998877777555554332 344454444333   257899999987


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        87 ~   87 (245)
T PRK07060         87 I   87 (245)
T ss_pred             C
Confidence            4

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0046  Score=55.60  Aligned_cols=75  Identities=20%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE---EEeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK---FVVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~  244 (299)
                      -++++++|.|+ |++|...++.+...|++|+++++++++++++.++   .|.+.   ..|..+.+.+.++       .++
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            35689999998 8999999999999999999999998887665433   35332   2244455444432       267


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|++++++|
T Consensus        85 iD~lVnnAG   93 (330)
T PRK06139         85 IDVWVNNVG   93 (330)
T ss_pred             CCEEEECCC
Confidence            999999998

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0066  Score=52.18  Aligned_cols=75  Identities=21%  Similarity=0.190  Sum_probs=55.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++.+.+...++++...+ .|..+.+.+.++       .+++|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999998 9999999999999999999999988777666555554222 245554443332       257899999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        86 ~ag~   89 (255)
T PRK06057         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            8874

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.04  E-value=0.014  Score=48.47  Aligned_cols=49  Identities=27%  Similarity=0.333  Sum_probs=43.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD  227 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~  227 (299)
                      -+|++++|+|.|.+|..+++.+...|++|+++++++++.+.+.+.+++.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~   74 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT   74 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE
Confidence            4778999999999999999999999999999999988888876666653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK09186 flagellin modification protein A; Provisional

Probab=97.04  E-value=0.013  Score=50.17  Aligned_cols=74  Identities=22%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCC--E--EEeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GAD--K--FVVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~--~--v~~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ |.+|...+..+...|++|+++.+++++.+++.+++    +..  .  ..|..+.+.+.++       .+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999998 89999999999999999999999887776654444    221  1  2244454444332       25


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      ++|+++.+.+
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            6899999885

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0085  Score=50.70  Aligned_cols=75  Identities=23%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++++|+|+ |.+|...++.+...|++|+++++++++.+.+.+++..   -+.+  +..+.+.+.+.       .+++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4688999998 9999999998888899999999988777666555431   1222  33444433221       24799


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++|.+.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99998874

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.04  E-value=0.0062  Score=53.12  Aligned_cols=104  Identities=18%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEEEeCCCHHHHHHhcCCc
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~  245 (299)
                      ..++.......++++++|+|+|++|.+++..+...|++|+++.|+.++.+.+.+++..   .......   .  .....+
T Consensus       105 ~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~---~--~~~~~~  179 (270)
T TIGR00507       105 VSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMD---E--LPLHRV  179 (270)
T ss_pred             HHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechh---h--hcccCc
Confidence            3344433333567899999999999999998888899999999998887777655532   1222111   1  112568


Q ss_pred             cEEEEcCCCch--hH---HHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGDH--PF---DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~~--~~---~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+|+++++...  ..   ......++++..++++-..
T Consensus       180 DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~  216 (270)
T TIGR00507       180 DLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYN  216 (270)
T ss_pred             cEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccC
Confidence            99999998631  01   1123557777788877444

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.03  E-value=0.0084  Score=52.53  Aligned_cols=93  Identities=19%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             chhhHHHHHHhhhccCCCCCCEEEEEcCCh-HHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHH
Q 022313          162 LCAGITVYTPMMRHKMNQPGKSLGVIGLGG-LGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA  240 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlI~G~g~-~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  240 (299)
                      +|.-.+....++.....-.|++++|+|.|. +|...+.++...|++|++..+....+.                     +
T Consensus       140 p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~---------------------~  198 (283)
T PRK14192        140 SATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP---------------------E  198 (283)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH---------------------H
Confidence            333334444555544447889999999976 999999999999998888876322221                     1


Q ss_pred             hcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       241 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..+.+|+++.++|.+..+.  .+.++++-.++++|..
T Consensus       199 ~~~~aDIvI~AtG~~~~v~--~~~lk~gavViDvg~n  233 (283)
T PRK14192        199 LVKQADIIVGAVGKPELIK--KDWIKQGAVVVDAGFH  233 (283)
T ss_pred             HhccCCEEEEccCCCCcCC--HHHcCCCCEEEEEEEe
Confidence            2256899999998765332  3568999999998866

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.03  E-value=0.0089  Score=52.60  Aligned_cols=85  Identities=14%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch---HHHHHHHhcCCC-----EEEeCCCHHHHH
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS---KKEEALSLLGAD-----KFVVSSDLEQMK  239 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~---~~~~~~~~~g~~-----~v~~~~~~~~~~  239 (299)
                      ..+++....-.++++++|+|+|+.+.+++..+...|+ +++++.|+++   +.+.+.++++..     .+....+.+.+.
T Consensus       112 ~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~  191 (288)
T PRK12749        112 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA  191 (288)
T ss_pred             HHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhh
Confidence            3344433222467899999999889887777777887 8999999853   666665666421     122211111122


Q ss_pred             HhcCCccEEEEcCC
Q 022313          240 ALGKSLDFIIDTAS  253 (299)
Q Consensus       240 ~~~~~~d~v~d~~g  253 (299)
                      +....+|+|++++.
T Consensus       192 ~~~~~aDivINaTp  205 (288)
T PRK12749        192 EALASADILTNGTK  205 (288)
T ss_pred             hhcccCCEEEECCC
Confidence            23357899999875

>PRK06484 short chain dehydrogenase; Validated

Probab=97.02  E-value=0.014  Score=55.81  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE---EEeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK---FVVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  247 (299)
                      ..++++||.|+ +++|...++.+...|++|+++++++++.+.+.++++...   ..|..+.+.+.++       .+.+|+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~  346 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV  346 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46789999988 899999999999999999999999888887766666432   2244444443332       267999


Q ss_pred             EEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++.++|..                          ...+.++..++.+|+++.++..
T Consensus       347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~  402 (520)
T PRK06484        347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI  402 (520)
T ss_pred             EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99988742                          0133444556667999998776

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.99  E-value=0.013  Score=52.42  Aligned_cols=95  Identities=22%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHH---hcCCCEEEe-CCCH-HHHHHhcCCccEEEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALS---LLGADKFVV-SSDL-EQMKALGKSLDFIID  250 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~v~~-~~~~-~~~~~~~~~~d~v~d  250 (299)
                      ++++++||.+|+| .|..++.+++..+.  .|+.++.+++..+.+++   +.|.+.+.. ..+. +.... ...||+|+.
T Consensus        78 i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~  155 (322)
T PRK13943         78 LDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFV  155 (322)
T ss_pred             CCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEE
Confidence            4889999999998 49999999998764  69999999876655533   456543321 1221 11111 257999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEE
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +.+-.......++.++++|+++..
T Consensus       156 ~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        156 TVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCchHHhHHHHHHhcCCCCEEEEE
Confidence            888666567788999999998763

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.015  Score=50.08  Aligned_cols=73  Identities=22%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-C-CE--EEeCCCHHHHHH----h----cCCccEE
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-A-DK--FVVSSDLEQMKA----L----GKSLDFI  248 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-~-~~--v~~~~~~~~~~~----~----~~~~d~v  248 (299)
                      +++||.|+ |++|...++.+...|++|++++++.+..+++.+.++ . -+  ..|..+.+.+.+    .    .+++|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            57899988 999999999998899999999999888877755544 1 11  224444433322    1    3578999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.++|.
T Consensus        82 i~~ag~   87 (260)
T PRK08267         82 FNNAGI   87 (260)
T ss_pred             EECCCC
Confidence            999884

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0099  Score=50.71  Aligned_cols=98  Identities=26%  Similarity=0.272  Sum_probs=63.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHh---cCCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSL---LGAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~---~g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |.+|...+..+...|++|++++++.+ +.+.+.++   .+.. ..  .|..+.+.+..+       .++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4678999998 99999999999889999999888653 33333222   2322 12  244444443322       247


Q ss_pred             ccEEEEcCCCc-------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++.+.+..                   ..++.+.+.++.+|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~  136 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSH  136 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCc
Confidence            89999888642                   2345556666667888888664

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.98  E-value=0.0068  Score=52.85  Aligned_cols=77  Identities=13%  Similarity=0.265  Sum_probs=55.2

Q ss_pred             HHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      ...+++.... ..+++++|+|+|+.+.+++..+...|+ +++++.|+.++.+.+.+.++.+.    .  +..  ....+|
T Consensus       110 f~~~L~~~~~-~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~----~--~~~--~~~~~d  180 (272)
T PRK12550        110 IAKLLASYQV-PPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW----R--PDL--GGIEAD  180 (272)
T ss_pred             HHHHHHhcCC-CCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc----h--hhc--ccccCC
Confidence            3445544333 456789999999999999999999998 79999999998888876665211    0  011  114589


Q ss_pred             EEEEcCC
Q 022313          247 FIIDTAS  253 (299)
Q Consensus       247 ~v~d~~g  253 (299)
                      +|++|+.
T Consensus       181 lvINaTp  187 (272)
T PRK12550        181 ILVNVTP  187 (272)
T ss_pred             EEEECCc
Confidence            9999876

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.97  E-value=0.0069  Score=52.28  Aligned_cols=75  Identities=23%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ +++|...++.+...|++|+++++++++.+.+.++++.. ..+  |..+.+.+.++       .+.+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5688999988 89999999999999999999999988887776555531 222  33344333222       2578999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        85 i~~ag~   90 (263)
T PRK06200         85 VGNAGI   90 (263)
T ss_pred             EECCCC
Confidence            999883

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.96  E-value=0.016  Score=49.42  Aligned_cols=75  Identities=23%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC--CC-EE--EeCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG--AD-KF--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g--~~-~v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++||.|+ |.+|...++.+...|++|+++++++++.+.+.+.+.  .. .+  .|..+.+.+..+       .+++|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999998 999999999988889999999999887766544433  11 12  234444444332       25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.96  E-value=0.019  Score=50.12  Aligned_cols=98  Identities=19%  Similarity=0.212  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCCCEE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTST---SKKEEALSLLGADKF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~---~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+   +++|++.++.+...|++|+++.+++   ++.+.+.++++....  .|-.+.+.+.++       .+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999986   4899999999999999999998874   234444345553332  244454443322       267


Q ss_pred             ccEEEEcCCCc-----------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-----------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++++.|..                             ...+.++..++.+|+++.++..
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~  145 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYL  145 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecC
Confidence            99999998831                             0234556677778999988765

>PLN00203 glutamyl-tRNA reductase

Probab=96.96  E-value=0.0077  Score=57.25  Aligned_cols=97  Identities=21%  Similarity=0.335  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh-
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP-  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  257 (299)
                      .+.+|+|+|+|.+|.++++.+...|+ +|+++.++.++.+.+.++++...+ .....+...+.....|+||.+++.... 
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~~~~dl~~al~~aDVVIsAT~s~~pv  343 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYKPLDEMLACAAEADVVFTSTSSETPL  343 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-EeecHhhHHHHHhcCCEEEEccCCCCCe
Confidence            36889999999999999999999997 799999999998888777752211 111222333444789999999876442 


Q ss_pred             -HHHHHHhccc----Cc---EEEEEcCC
Q 022313          258 -FDAYMSLLKV----AG---VYVLVGFP  277 (299)
Q Consensus       258 -~~~~~~~l~~----~G---~~v~~g~~  277 (299)
                       ....++.+.+    .+   .+++++.+
T Consensus       344 I~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        344 FLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             eCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence             3333333322    12   57888888

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.94  E-value=0.0032  Score=61.81  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch---------------------HHHHHHHhcCCCEEEeCCC--HH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS---------------------KKEEALSLLGADKFVVSSD--LE  236 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~---------------------~~~~~~~~~g~~~v~~~~~--~~  236 (299)
                      .+++|+|+|+|+.|+.++..++..|.+|+++.+.+.                     +.+.+ +++|.+..++..-  ..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~-~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIF-TAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHH-HHCCeEEEcCCccCCcC
Confidence            489999999999999999999999999999987753                     33444 6788766555431  11


Q ss_pred             HHHHhcCCccEEEEcCCCc
Q 022313          237 QMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~  255 (299)
                      .+.++..++|.||.++|..
T Consensus       388 ~~~~l~~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGTY  406 (639)
T ss_pred             CHHHHHhcCCEEEEeCCCC
Confidence            2334456899999999964

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=96.94  E-value=0.0003  Score=53.71  Aligned_cols=50  Identities=36%  Similarity=0.442  Sum_probs=35.9

Q ss_pred             cCCCEEEeCCCHHHHHHhcCCccEEEEcCC--CchhHHHHHHhcccCcEEEEEcC
Q 022313          224 LGADKFVVSSDLEQMKALGKSLDFIIDTAS--GDHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       224 ~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      +|+++++++++.+.  .-.+++|+|||++|  +...+..++++| ++|+++.++.
T Consensus         1 LGAd~vidy~~~~~--~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~   52 (127)
T PF13602_consen    1 LGADEVIDYRDTDF--AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG   52 (127)
T ss_dssp             CT-SEEEETTCSHH--HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S
T ss_pred             CCcCEEecCCCccc--cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC
Confidence            58999999986544  33589999999999  555346677788 9999999974

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.90  E-value=0.0043  Score=53.89  Aligned_cols=109  Identities=22%  Similarity=0.308  Sum_probs=75.9

Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCCC-EEEeCCCHHHHHHh
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGAD-KFVVSSDLEQMKAL  241 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~  241 (299)
                      ..++..+.....+++|.+||=+|+|- |.+++.+|+..|++|+.++.+++..+.+.+   +.|.+ .+-.  .....+.+
T Consensus        58 ~~k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v--~l~d~rd~  134 (283)
T COG2230          58 RAKLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEV--RLQDYRDF  134 (283)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEE--Eecccccc
Confidence            44455555666679999999999974 778889999999999999999988776643   34533 1100  01223334


Q ss_pred             cCCccEEE-----EcCCC---chhHHHHHHhcccCcEEEEEcCC
Q 022313          242 GKSLDFII-----DTASG---DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+.||.|+     +.+|.   +..+..+-+.|+++|++++-...
T Consensus       135 ~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         135 EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence            45688884     45554   23588889999999999876554

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.89  E-value=0.0054  Score=58.21  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      +.++++|+|+|.|..|++++++++..|++|++++..+.+.+.+ ++.|...+...+..+.+    ..+|+|+.+.|-+.
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~~l----~~~D~VV~SpGi~~   82 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQQI----ADYALVVTSPGFRP   82 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHhHh----hcCCEEEECCCCCC
Confidence            3678899999999999999999999999999999776666655 56787443222222222    45799999988653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.89  E-value=0.011  Score=49.65  Aligned_cols=96  Identities=24%  Similarity=0.245  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHh---cCCC--EEEeCCCHHHHHHhcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSL---LGAD--KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .++++++||-+|+|. |..+..+++..+  .+|+.++.+++-.+.+.+.   .|..  .++..+..+... -..+||+|+
T Consensus        73 ~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-~~~~fD~I~  150 (212)
T PRK13942         73 DLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-ENAPYDRIY  150 (212)
T ss_pred             CCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-cCCCcCEEE
Confidence            348999999999874 667777777665  5999999998877666433   3432  222222111111 126799998


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEE
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      -............+.|+++|+++..
T Consensus       151 ~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        151 VTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ECCCcccchHHHHHhhCCCcEEEEE
Confidence            7665555578889999999998765

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0092  Score=51.36  Aligned_cols=77  Identities=19%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC--E--EEeCCCHHHHHHh-------cCCcc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD--K--FVVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~--~--v~~~~~~~~~~~~-------~~~~d  246 (299)
                      -+++++||.|+ |.+|...++.+...|++|++++++++..+.+.++.+..  .  ..+..+.+.+.+.       .+++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            57789999998 99999999999999999999999887776664444322  2  2244444443322       25899


Q ss_pred             EEEEcCCCc
Q 022313          247 FIIDTASGD  255 (299)
Q Consensus       247 ~v~d~~g~~  255 (299)
                      +|+.+.|..
T Consensus        89 ~vi~~ag~~   97 (264)
T PRK12829         89 VLVNNAGIA   97 (264)
T ss_pred             EEEECCCCC
Confidence            999988854

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0082  Score=51.57  Aligned_cols=73  Identities=26%  Similarity=0.247  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCE--EEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADK--FVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++. ..+..  .-+...  ..+..+.+.+.+.-+++|++++++|.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESN--DESPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhh--ccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            4678999998 89999999999999999999998762 22222  111112  23455555555555789999999984

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.87  E-value=0.011  Score=52.05  Aligned_cols=96  Identities=22%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++....--.|++|.|+|. +.+|.-.+.++...|++|++..+.....                    
T Consensus       137 ~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l--------------------  196 (301)
T PRK14194        137 VLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDA--------------------  196 (301)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCH--------------------
Confidence            3567776777766766554468999999998 5999999999999999999986654322                    


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       .+..+..|+|+-++|.+..+...+  ++++..++++|..
T Consensus       197 -~e~~~~ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin  233 (301)
T PRK14194        197 -KALCRQADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN  233 (301)
T ss_pred             -HHHHhcCCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence             233356899999999887666554  8999999999855

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.87  E-value=0.0064  Score=53.99  Aligned_cols=107  Identities=15%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .... ....+++|+|+|..|.+.+..+.. .+. +|.+..+++++.+.+.+++...  .+. ..   ...+.-.+.|+|+
T Consensus       119 ~La~-~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~---~~~~av~~aDiVi  193 (304)
T PRK07340        119 TLAP-APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PL---DGEAIPEAVDLVV  193 (304)
T ss_pred             HhCC-CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-EC---CHHHHhhcCCEEE
Confidence            3444 567899999999999998888864 565 8999999999888877776421  111 11   2233346899999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhh
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASL  287 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l  287 (299)
                      .++.....+-..  .++++-.+..+|..  ....++...+
T Consensus       194 taT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~~~  231 (304)
T PRK07340        194 TATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAPRTV  231 (304)
T ss_pred             EccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCHHHH
Confidence            999876533333  37899999999987  5566665533

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.011  Score=51.28  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHH-------hcCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKA-------LGKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~-------~~~~~d~v~  249 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++...+  .|..+.+.+.+       ..++.|+++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999998 9999999998888899999999998887776555552222  24445444322       236799999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+.|.
T Consensus        84 ~~ag~   88 (273)
T PRK07825         84 NNAGV   88 (273)
T ss_pred             ECCCc
Confidence            99884

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.82  E-value=0.0088  Score=50.23  Aligned_cols=97  Identities=18%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE----------------eCCCHHHHH-Hh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV----------------VSSDLEQMK-AL  241 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~----------------~~~~~~~~~-~~  241 (299)
                      .++.+||+.|+|. |.-++-+|. .|.+|++++.++...+.+.++.+.....                -..|...+. +.
T Consensus        33 ~~~~rvLd~GCG~-G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGK-SLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCc-hhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            5778999999974 778888875 6999999999999888865544432100                000000000 11


Q ss_pred             cCCccEEEEcCCC--------chhHHHHHHhcccCcEEEEEcCC
Q 022313          242 GKSLDFIIDTASG--------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+.||.|+|+..-        ...+..+.+.|+|+|+++.++..
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            2468999996541        22477889999999987766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06196 oxidoreductase; Provisional

Probab=96.81  E-value=0.0099  Score=52.95  Aligned_cols=75  Identities=28%  Similarity=0.369  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHHh-------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      .+++++|.|+ |++|...+..+...|++|++++|+.++.+.+.+++..-..  .|..+.+.++++       .+++|+++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li  104 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI  104 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            5689999998 8999999999988999999999998877665444431122  244444444332       25799999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .++|.
T Consensus       105 ~nAg~  109 (315)
T PRK06196        105 NNAGV  109 (315)
T ss_pred             ECCCC
Confidence            99873

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.81  E-value=0.011  Score=51.07  Aligned_cols=74  Identities=27%  Similarity=0.206  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHH----h---cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKA----L---GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~----~---~~~~d~v  248 (299)
                      ++++++|.|+ |++|...++.+...|++|++++++.++.+.+.+..+.. ..  .|..+.+.+.+    .   .+++|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            5789999998 89999999999999999999999888777775444421 11  24444333322    1   2678999


Q ss_pred             EEcCC
Q 022313          249 IDTAS  253 (299)
Q Consensus       249 ~d~~g  253 (299)
                      +.+.|
T Consensus        84 i~~Ag   88 (262)
T TIGR03325        84 IPNAG   88 (262)
T ss_pred             EECCC
Confidence            99987

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.012  Score=50.20  Aligned_cols=75  Identities=24%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EE--eCCCHHHHHH-------hcCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FV--VSSDLEQMKA-------LGKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~--~~~~~~~~~~-------~~~~~d~v  248 (299)
                      ++++++|.|+ |.+|...++.+...|++|++++++++..+.+.++++... .+  +..+.+.+..       ..+++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4678999998 999999999999999999999998877776656666432 22  3333333222       12579999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        85 i~~ag~   90 (249)
T PRK06500         85 FINAGV   90 (249)
T ss_pred             EECCCC
Confidence            998874

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.033  Score=48.36  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC--E--EEeCCCHHHHHHh-------cCCcc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD--K--FVVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~--v~~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++|.|+ |++|...++.+...|++|++++++++..+.+.++   .+..  .  ..|..+.+.+.++       .+++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            36899988 9999999999999999999999987765554333   2322  1  2355554443322       25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        81 ~lv~~ag~   88 (272)
T PRK07832         81 VVMNIAGI   88 (272)
T ss_pred             EEEECCCC
Confidence            99999984

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.78  E-value=0.017  Score=51.49  Aligned_cols=94  Identities=26%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCCch----
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASGDH----  256 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~~~----  256 (299)
                      +|+|+|+ |.+|...++.+...|.+|++++|+.++...+ +..+.+.+. |..+.+.+.+.-.++|+||.+++...    
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~   80 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLY   80 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCcc
Confidence            6899998 9999999999998999999999987655444 344544332 44456666665578999999876321    


Q ss_pred             --------hHHHHHHhcccCc--EEEEEcCC
Q 022313          257 --------PFDAYMSLLKVAG--VYVLVGFP  277 (299)
Q Consensus       257 --------~~~~~~~~l~~~G--~~v~~g~~  277 (299)
                              ....+++..+..|  +++.++..
T Consensus        81 ~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         81 NAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             chhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence                    1133445555444  78877664

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.78  E-value=0.019  Score=48.71  Aligned_cols=109  Identities=12%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe---EEEEeCC----chHH-------HHHHHhcCCCEE
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN---VTVLSTS----TSKK-------EEALSLLGADKF  229 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~---v~~~~~~----~~~~-------~~~~~~~g~~~v  229 (299)
                      .+.....+++....--++.+++|+|+|+.|..++..+...|.+   +++++++    .++.       +.+.++++... 
T Consensus         8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-   86 (226)
T cd05311           8 TLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-   86 (226)
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-
Confidence            3344455665544325678999999999999999999988974   9999988    3432       23334443221 


Q ss_pred             EeCCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          230 VVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       230 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .. .   .+.+.-.++|+++++++........++.+.++..++.+-.+
T Consensus        87 ~~-~---~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~lsnP  130 (226)
T cd05311          87 TG-G---TLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALANP  130 (226)
T ss_pred             cc-C---CHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeCCC
Confidence            11 1   12122245899999997433234667777777766655433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.77  E-value=0.036  Score=46.24  Aligned_cols=91  Identities=13%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      .|++|+|+|+|.+|...++.+...|++|++++.... ..+.+. +.|.-..+...-.   ...-.++|+|+-+++.+..-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~---~~dl~~~~lVi~at~d~~ln   83 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLA-EQGGITWLARCFD---ADILEGAFLVIAATDDEELN   83 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCC---HHHhCCcEEEEECCCCHHHH
Confidence            568999999999999999999999999999987643 344442 3342122221111   11126799999999998644


Q ss_pred             HHHHHhcccCcEEEEE
Q 022313          259 DAYMSLLKVAGVYVLV  274 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~  274 (299)
                      .......+..|..+.+
T Consensus        84 ~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        84 RRVAHAARARGVPVNV   99 (205)
T ss_pred             HHHHHHHHHcCCEEEE
Confidence            5556666666776654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.76  E-value=0.0088  Score=53.68  Aligned_cols=102  Identities=18%  Similarity=0.264  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHH-HCCC-eEEEEeCCchHHHHHHHhc----CCCEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGK-AFGL-NVTVLSTSTSKKEEALSLL----GADKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~-~~g~-~v~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      +..++++|+|+|..+.+.+..+. ..+. +|.+..|+.++.+.+.+++    |.+ +....+   +.+.-.+.|+|+.++
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~~~---~~~av~~aDiVvtaT  202 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAATD---PRAAMSGADIIVTTT  202 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEeCC---HHHHhccCCEEEEec
Confidence            45678999999999988888776 4665 8999999999888776655    432 222222   233336899999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCC--CceeeChh
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPA  285 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~  285 (299)
                      +....+ -..+.++++-.+..+|..  ....+++.
T Consensus       203 ~s~~p~-i~~~~l~~g~~i~~vg~~~p~~rEld~~  236 (326)
T TIGR02992       203 PSETPI-LHAEWLEPGQHVTAMGSDAEHKNEIDPA  236 (326)
T ss_pred             CCCCcE-ecHHHcCCCcEEEeeCCCCCCceecCHH
Confidence            875421 123468888888888876  34444443

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.0069  Score=53.45  Aligned_cols=75  Identities=24%  Similarity=0.321  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      .+++++|.|+ |++|...++.+...|++|++++++.++.+.+.+++   +.+ .+  .|..+.+.+.++       .+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999998 99999999999889999999999988776654433   322 12  233444443332       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK04457 spermidine synthase; Provisional

Probab=96.75  E-value=0.036  Score=48.13  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCC----C--EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGA----D--KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~----~--~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      .+.++||++|.|+ |..+..+++... .++++++.+++-.+.+.+.++.    +  +++..+..+.+....+.+|+|+-.
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4567899999875 777777877764 5999999999988888665652    1  334444344555555789999743


Q ss_pred             C-C-C--------chhHHHHHHhcccCcEEEEE
Q 022313          252 A-S-G--------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       252 ~-g-~--------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      . . .        ...++.+.+.|+++|.++..
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            2 1 1        24578889999999999873

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.74  E-value=0.014  Score=51.87  Aligned_cols=91  Identities=21%  Similarity=0.228  Sum_probs=64.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .+|.|+|.|.+|...+..++..|.  +|+++++++++.+.+ ++.|........    ..+.....|+|+.|+....   
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-~~~g~~~~~~~~----~~~~~~~aDvViiavp~~~~~~   81 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-RELGLGDRVTTS----AAEAVKGADLVILCVPVGASGA   81 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-HhCCCCceecCC----HHHHhcCCCEEEECCCHHHHHH
Confidence            579999999999999998888884  899999998888777 467742211111    1223367899999998754   


Q ss_pred             hHHHHHHhcccCcEEEEEcCC
Q 022313          257 PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+......++++..++++|..
T Consensus        82 v~~~l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         82 VAAEIAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             HHHHHHhhCCCCCEEEeCccc
Confidence            133344566777777777764

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.011  Score=50.85  Aligned_cols=75  Identities=23%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-----CCC-EE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-----GAD-KF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-----g~~-~v--~~~~~~~~~~~~-------~~  243 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++++.+.+.+++     +.. .+  .|..+.+.+.++       .+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688999998 89999999999999999999999888776654443     211 12  244444433322       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.+.|.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            79999999883

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.037  Score=48.09  Aligned_cols=74  Identities=18%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      ++++||.|+ |.+|...++.+...|++|++++++.+..+.+.+.++.. ..  .|..+.+.+.+.       .+++|.++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999998 99999999998888999999999988877665544422 12  233344333222       25789999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+.|.
T Consensus        83 ~~ag~   87 (275)
T PRK08263         83 NNAGY   87 (275)
T ss_pred             ECCCC
Confidence            99884

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.72  E-value=0.0076  Score=52.39  Aligned_cols=120  Identities=22%  Similarity=0.223  Sum_probs=83.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH-----------HH-------HHH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL-----------EQ-------MKA  240 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-----------~~-------~~~  240 (299)
                      .++.++++.|.|..|+.++..++..|+-|...+....+.++- +++|+.-.-..+++           +.       +.+
T Consensus       162 v~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv-~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~  240 (356)
T COG3288         162 VSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQV-ESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE  240 (356)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhh-hhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence            677889999999999999999999999999988888887776 56775332211111           11       112


Q ss_pred             hcCCccEEEEcCC--C----chhHHHHHHhcccCcEEEEEcCC--Ccee--eChhhhhcCCeeeeeecC
Q 022313          241 LGKSLDFIIDTAS--G----DHPFDAYMSLLKVAGVYVLVGFP--SKVK--FSPASLNIGNAPLFRFKS  299 (299)
Q Consensus       241 ~~~~~d~v~d~~g--~----~~~~~~~~~~l~~~G~~v~~g~~--~~~~--~~~~~l~~~~~~~~g~~~  299 (299)
                      ..+++|+||-+.-  +    ..........|+||+.++++..-  +...  -+-.....++.+|+|+.+
T Consensus       241 ~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~n  309 (356)
T COG3288         241 QAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTN  309 (356)
T ss_pred             HhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecC
Confidence            2479999998643  2    23567788999999999999655  2222  122334466888888864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.72  E-value=0.025  Score=47.11  Aligned_cols=92  Identities=11%  Similarity=0.058  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -.+++|+|+|+|.+|...++.+...|++|+++.+... +...+.++ +.-. .......  ...-.++|+||-+++.+. 
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~-~~i~-~~~~~~~--~~~l~~adlViaaT~d~e-   82 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEE-GKIR-WKQKEFE--PSDIVDAFLVIAATNDPR-   82 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhC-CCEE-EEecCCC--hhhcCCceEEEEcCCCHH-
Confidence            3678999999999999999988889999999876532 23333222 2111 1111100  111267899999999987 


Q ss_pred             HHHHHHhcccCcEEEEEc
Q 022313          258 FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g  275 (299)
                      .+..+...+..+.++.+.
T Consensus        83 lN~~i~~~a~~~~lvn~~  100 (202)
T PRK06718         83 VNEQVKEDLPENALFNVI  100 (202)
T ss_pred             HHHHHHHHHHhCCcEEEC
Confidence            555554444445555553

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.013  Score=50.52  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCE----EEeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADK----FVVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~----v~~~~~~~~~~~~-------~~  243 (299)
                      .+++++|.|+ +++|...++.+...|++|+++++++++.+...+++    +...    ..|..+.+.+.++       .+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5789999998 89999999999999999999999987766543332    2112    1244454443322       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.69  E-value=0.0072  Score=46.27  Aligned_cols=83  Identities=18%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      .+.-+|-|+|+|-+|......++..|..|..+. ++.+..+++.+.++...+.+.      .+.....|++|-++.+.. 
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~------~~~~~~aDlv~iavpDda-   80 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDL------EEILRDADLVFIAVPDDA-   80 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----T------TGGGCC-SEEEE-S-CCH-
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccc------ccccccCCEEEEEechHH-
Confidence            344678999999999999999999999887764 666666777555665444433      234578999999999987 


Q ss_pred             HHHHHHhcccC
Q 022313          258 FDAYMSLLKVA  268 (299)
Q Consensus       258 ~~~~~~~l~~~  268 (299)
                      +..+.+.|...
T Consensus        81 I~~va~~La~~   91 (127)
T PF10727_consen   81 IAEVAEQLAQY   91 (127)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHh
Confidence            77777777655

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.69  E-value=0.0032  Score=54.97  Aligned_cols=97  Identities=27%  Similarity=0.301  Sum_probs=58.9

Q ss_pred             hhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCCC--EEEeCCCHHHHHHhcCCccE
Q 022313          173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGAD--KFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~  247 (299)
                      -....+++|++||-+|+| -|-.+..+++..|++|+.++.+++..+.+.+   +.|..  .-+...+   ..++...||.
T Consensus        55 ~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D---~~~~~~~fD~  130 (273)
T PF02353_consen   55 CEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD---YRDLPGKFDR  130 (273)
T ss_dssp             HTTTT--TT-EEEEES-T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES----GGG---S-SE
T ss_pred             HHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee---ccccCCCCCE
Confidence            334456999999999997 5777888999889999999999988877643   33421  1121222   2233458999


Q ss_pred             EEE-----cCCCc---hhHHHHHHhcccCcEEEE
Q 022313          248 IID-----TASGD---HPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       248 v~d-----~~g~~---~~~~~~~~~l~~~G~~v~  273 (299)
                      |+.     .+|..   ..++.+.+.|+|+|+++.
T Consensus       131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l  164 (273)
T PF02353_consen  131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL  164 (273)
T ss_dssp             EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred             EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence            854     44432   347888899999999874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.011  Score=51.28  Aligned_cols=75  Identities=25%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+...+++   +.. .+  .|..+.+.+.++       .++
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            36789999998 89999999999999999999999877665443333   222 12  244444443332       257


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|+++.+.|
T Consensus        87 iD~vi~~ag   95 (264)
T PRK07576         87 IDVLVSGAA   95 (264)
T ss_pred             CCEEEECCC
Confidence            899998876

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.67  E-value=0.019  Score=48.42  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCCCEEEeCCC--HHHHHHhcCCccEEEE---
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGADKFVVSSD--LEQMKALGKSLDFIID---  250 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~~~v~~~~~--~~~~~~~~~~~d~v~d---  250 (299)
                      -+|.+||=+|+|+ |+++.-+|+ .|++|+.++-+++-.+.++.   +-|..  +++..  .+.+.+.++.||+|+.   
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEV  133 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEV  133 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhH
Confidence            4788888889854 566666666 58999999999988887741   22222  23332  2333333478999965   


Q ss_pred             --cCCCch-hHHHHHHhcccCcEEEEE
Q 022313          251 --TASGDH-PFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 --~~g~~~-~~~~~~~~l~~~G~~v~~  274 (299)
                        -+..+. .++.+.++++|+|.++.-
T Consensus       134 lEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         134 LEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             HHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence              344433 588899999999988764

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.035  Score=47.90  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--C-CCEE--EeCCCHHHHHHh------cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL--G-ADKF--VVSSDLEQMKAL------GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~--g-~~~v--~~~~~~~~~~~~------~~~~d~  247 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++  + ....  .|..+.+.+.++      .+++|.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            4678999987 99999999999999999999999988777664443  2 1112  233344333222      257899


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.++|.
T Consensus        84 lv~~ag~   90 (263)
T PRK09072         84 LINNAGV   90 (263)
T ss_pred             EEECCCC
Confidence            9999874

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.65  E-value=0.029  Score=46.81  Aligned_cols=95  Identities=23%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhcCCccEEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ++++++||=+|+|. |..+..+++..+  .+|+.++.+++-.+.+.+.   .+..   .++..+-.+.+. ..+.||+|+
T Consensus        70 ~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii  147 (205)
T PRK13944         70 PRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAII  147 (205)
T ss_pred             CCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEE
Confidence            47889999999864 777777777664  5899999998876655433   3432   233322211111 135899998


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEE
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      -+...........+.|+++|+++..
T Consensus       148 ~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        148 VTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             EccCcchhhHHHHHhcCcCcEEEEE
Confidence            7766555567888999999998764

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.022  Score=49.10  Aligned_cols=76  Identities=24%  Similarity=0.290  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcC-C-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cCCCEE--E--eCCCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-G-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LGADKF--V--VSSDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g~~~v--~--~~~~~~~~~~~-------  241 (299)
                      .++++++|.|+ | ++|...++.+...|++|+++++++++.+...++    ++...+  +  |..+.+.+.++       
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56789999987 6 799999999999999999999887766554332    443222  2  44444433322       


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      .+++|+++.+.|.
T Consensus        95 ~g~id~li~~ag~  107 (262)
T PRK07831         95 LGRLDVLVNNAGL  107 (262)
T ss_pred             cCCCCEEEECCCC
Confidence            2578999999984

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.014  Score=50.12  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-E--EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-K--FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++.++.++.+.+.+++   +.. .  ..|..+.+.+.++       .+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999998 89999999999999999999999887776654443   321 1  1244444443332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.64  E-value=0.016  Score=49.76  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |.+|...++.+...|++|+++++++++.+.+.+++   |... .  .|..+.+.+.++       .+++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999998 99999999999989999999999887665543333   3211 1  244444444332       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.013  Score=52.22  Aligned_cols=75  Identities=28%  Similarity=0.356  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----C-CC-EE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----G-AD-KF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g-~~-~v--~~~~~~~~~~~~-------~~  243 (299)
                      ++++++|.|+ +++|...++.+...|++|+++.|+.++.+.+.+++    + .. .+  .|..+.+.++++       .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5789999998 89999999999999999999999987766554333    2 11 11  244455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            78999998873

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.64  E-value=0.044  Score=47.04  Aligned_cols=97  Identities=15%  Similarity=0.104  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC--EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGLG---GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD--KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~g---~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      .+++++|.|++   ++|.+.++.+...|++|+++.+++...+.+ +++...  ..  .|-.+.+.++++       .+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL-QKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH-HhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999874   899999999999999999998874333333 343211  11  233344333322       2679


Q ss_pred             cEEEEcCCCc-----------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGD-----------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+++++.|..                             ...+.+++.++.+|+++.++..
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~  145 (252)
T PRK06079         85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYF  145 (252)
T ss_pred             CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEecc
Confidence            9999988731                             0123445667778898888765

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.014  Score=49.19  Aligned_cols=75  Identities=20%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE-EeCCCHHHHHHh-------cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF-VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v-~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +++++||.|+ |.+|..+++.+...|++|++++++.++.....+++   +.+.+ .|..+.+.+.++       .+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            4789999998 99999999999888999999999876644432222   22221 233444333221       257999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.+.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998874

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.63  E-value=0.022  Score=45.41  Aligned_cols=96  Identities=17%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+.+..++....--.|++++|+|. ..+|.-...++...++.|++.......+++.                 
T Consensus        14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~-----------------   76 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEI-----------------   76 (160)
T ss_dssp             SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHH-----------------
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccce-----------------
Confidence            4567777777777776654478999999998 6899999999999999999987665444333                 


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                          .+..|+|+-++|.+..+  -.+.++++..++++|..
T Consensus        77 ----~~~ADIVVsa~G~~~~i--~~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   77 ----TRRADIVVSAVGKPNLI--KADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             ----HTTSSEEEE-SSSTT-B---GGGS-TTEEEEE--CE
T ss_pred             ----eeeccEEeeeecccccc--ccccccCCcEEEecCCc
Confidence                25688999999887633  23578898888888866

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.63  E-value=0.034  Score=47.54  Aligned_cols=75  Identities=21%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-E--EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-K--FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |.+|...++.+...|++|+++++++++.+.+.+++   +.. +  ..|..+.+.+.++       .+++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999998888999999999987766553333   322 1  1244444443332       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+++.
T Consensus        83 d~vi~~a~~   91 (258)
T PRK12429         83 DILVNNAGI   91 (258)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06128 oxidoreductase; Provisional

Probab=96.63  E-value=0.058  Score=47.66  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=63.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch--HHHHH---HHhcCCCEE---EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS--KKEEA---LSLLGADKF---VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~--~~~~~---~~~~g~~~v---~~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ |++|...+..+...|++|+++.++.+  ..+..   .++.+....   .|..+.+.+.++       .+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            5689999988 99999999999999999988776532  12222   233443221   234444433322       25


Q ss_pred             CccEEEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|+++.+.|..                          ...+.+++.++.+|+++.++..
T Consensus       134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~  193 (300)
T PRK06128        134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSI  193 (300)
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCc
Confidence            799999998831                          1233445566778899988766

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.62  E-value=0.017  Score=48.06  Aligned_cols=96  Identities=18%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch-------------------HHHHHH---HhcCC-CEEE--e-C
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS-------------------KKEEAL---SLLGA-DKFV--V-S  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~-------------------~~~~~~---~~~g~-~~v~--~-~  232 (299)
                      ...+|+|+|+|++|..+++.+...|. ++++++.+.-                   +.+.++   +++.. ..+-  + .
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            45779999999999999999999998 8888886621                   111111   22221 1111  1 1


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcE-EEEEc
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGV-YVLVG  275 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~-~v~~g  275 (299)
                      -+.+.+.+.-+++|+|++|+.+........+.....++ ++..+
T Consensus       100 i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~  143 (202)
T TIGR02356       100 VTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA  143 (202)
T ss_pred             CCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            12233444557899999999887633333344344443 44433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02366 spermidine synthase

Probab=96.62  E-value=0.028  Score=49.89  Aligned_cols=96  Identities=16%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC---------CEEEeCCCHHHHHHh-cCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA---------DKFVVSSDLEQMKAL-GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~-~~~~d~  247 (299)
                      .+.++||++|+|. |..+..++++-+. +|.+++.+++-.+.+++.++.         -.++..+....+++. .+.||+
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            5678999998865 5566677777654 788888887766666443431         122222223344444 467999


Q ss_pred             EEEcCCCc----------hhHHHHHHhcccCcEEEEEc
Q 022313          248 IIDTASGD----------HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       248 v~d~~g~~----------~~~~~~~~~l~~~G~~v~~g  275 (299)
                      |+-....+          ..++.+.++|+++|.++.-+
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            98754431          24778899999999997643

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.60  E-value=0.019  Score=53.01  Aligned_cols=75  Identities=20%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC--CC-EEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG--AD-KFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g--~~-~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ++++++|.|+ |++|.+.++.+...|++|+++++++++.+...+..+  .. ...|..+.+.+.+.-+++|+++.+.|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi  255 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGI  255 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence            5789999998 999999999988899999999988766543322211  11 122455566666655789999998873

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.60  E-value=0.03  Score=46.03  Aligned_cols=96  Identities=20%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHH---HhcCCCE--EEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEAL---SLLGADK--FVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~---~~~g~~~--v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++.+||-+|+|. |..+..+++.. +++|+.++.+++..+.+.   ++.+.+.  ++.. +...... .+.||+|+-
T Consensus        42 ~l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~-d~~~~~~-~~~fDlV~~  118 (187)
T PRK00107         42 YLPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG-RAEEFGQ-EEKFDVVTS  118 (187)
T ss_pred             hcCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec-cHhhCCC-CCCccEEEE
Confidence            345688999998863 55555555544 569999999987665543   3445432  2222 2222222 457999997


Q ss_pred             cCCCc--hhHHHHHHhcccCcEEEEEc
Q 022313          251 TASGD--HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       251 ~~g~~--~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .....  ..++.+.+.|+++|+++.+-
T Consensus       119 ~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        119 RAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            54332  35778889999999999873

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.017  Score=49.83  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. ++  .+..+.+.+.++       .++
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35789999998 89999999999999999999999887766553332   321 22  244444443322       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus        88 id~vi~~Ag~   97 (263)
T PRK07814         88 LDIVVNNVGG   97 (263)
T ss_pred             CCEEEECCCC
Confidence            9999998873

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.60  E-value=0.026  Score=49.26  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++....--.|++|+|+|.| .+|.-.+.++...|+.|++.......+                    
T Consensus       135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l--------------------  194 (285)
T PRK14191        135 GFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDL--------------------  194 (285)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHH--------------------
Confidence            34677777777777655443579999999985 999999999999999998875432222                    


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       .+..+..|+|+-++|.+..+.  -+.++++..++++|..
T Consensus       195 -~~~~~~ADIvV~AvG~p~~i~--~~~vk~GavVIDvGi~  231 (285)
T PRK14191        195 -SFYTQNADIVCVGVGKPDLIK--ASMVKKGAVVVDIGIN  231 (285)
T ss_pred             -HHHHHhCCEEEEecCCCCcCC--HHHcCCCcEEEEeecc
Confidence             233366899999999877333  4577999999999964

>PRK05717 oxidoreductase; Validated

Probab=96.60  E-value=0.023  Score=48.80  Aligned_cols=76  Identities=22%  Similarity=0.237  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHH----h---cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKA----L---GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~----~---~~~~d~  247 (299)
                      .++++++|.|+ |.+|...+..+...|++|++++++.++.+.+.++++.. ..  .|..+.+.+.+    +   .+++|+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            45789999987 99999999999999999999988877666654555532 12  23334433322    2   256899


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        88 li~~ag~   94 (255)
T PRK05717         88 LVCNAAI   94 (255)
T ss_pred             EEECCCc
Confidence            9998884

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.58  E-value=0.04  Score=42.93  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=68.9

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .++|...+....++....--.|++|.|+|. ..+|.-.+.++...|++|++..+....+++.                  
T Consensus         7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~------------------   68 (140)
T cd05212           7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK------------------   68 (140)
T ss_pred             ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH------------------
Confidence            456666666666665544468999999997 7899999999999999999987654333322                  


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                         .+..|+|+-++|.+..+.  -+.++++-.++.+|..
T Consensus        69 ---v~~ADIVvsAtg~~~~i~--~~~ikpGa~Vidvg~~  102 (140)
T cd05212          69 ---VHDADVVVVGSPKPEKVP--TEWIKPGATVINCSPT  102 (140)
T ss_pred             ---HhhCCEEEEecCCCCccC--HHHcCCCCEEEEcCCC
Confidence               255788888888775333  4568888888887755

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.023  Score=48.70  Aligned_cols=76  Identities=24%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C-CCEEE--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G-ADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g-~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      .++++++|.|+ |.+|..++..+...|++|+++.+++++.+.+.+.+   + ...++  |..+.+.+.++       .++
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            45789999998 99999999999999999999999988776654332   2 11222  33344333332       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999983

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.017  Score=49.47  Aligned_cols=74  Identities=15%  Similarity=0.094  Sum_probs=52.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCCC-E--EEeCCCHHHHHHh-cCCccEEEEcC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGAD-K--FVVSSDLEQMKAL-GKSLDFIIDTA  252 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~-~~~~d~v~d~~  252 (299)
                      ++++||.|+ |.+|...++.+...|++|++++++++..+.+.+   ..+.. .  ..|..+.+.+... ..++|++|.+.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            457999998 999999999999999999999998766554422   22321 1  2245555555443 35899999998


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      |.
T Consensus        82 g~   83 (257)
T PRK09291         82 GI   83 (257)
T ss_pred             Cc
Confidence            73

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.57  E-value=0.025  Score=49.38  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=72.4

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      ..||...+.+..++....--.|++++|+|.| .+|.-.+.++...+++|++..+....+                     
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l---------------------  196 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNL---------------------  196 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCH---------------------
Confidence            4677777777777766543579999999985 699999999999999998886543222                     


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++..+.+|+++.++|.+..+..  +.++++..++++|..
T Consensus       197 ~~~~~~ADIvi~avG~p~~v~~--~~vk~gavVIDvGin  233 (285)
T PRK10792        197 RHHVRNADLLVVAVGKPGFIPG--EWIKPGAIVIDVGIN  233 (285)
T ss_pred             HHHHhhCCEEEEcCCCcccccH--HHcCCCcEEEEcccc
Confidence            2334678999999998874433  788999999999944

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.57  E-value=0.024  Score=48.33  Aligned_cols=74  Identities=24%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-E--EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-K--FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++.+.+.++   .+.. .  ..|..+.+.+.++       .+++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999998 9999999999999999999999988766555333   2332 1  2233343333221       2578


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |.+|.+.|
T Consensus        84 d~vi~~ag   91 (253)
T PRK08217         84 NGLINNAG   91 (253)
T ss_pred             CEEEECCC
Confidence            99999987

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.55  E-value=0.019  Score=46.36  Aligned_cols=98  Identities=20%  Similarity=0.218  Sum_probs=67.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      +|.|+|+ |-+|...++-|...|..|++++|++++.... +..-   ++  +.-+.+.+.+.-.++|+||++.+...   
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~---i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~   77 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVT---ILQKDIFDLTSLASDLAGHDAVISAFGAGASDN   77 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccce---eecccccChhhhHhhhcCCceEEEeccCCCCCh
Confidence            5789998 9999999999999999999999998887653 1111   11  11123344445589999999988641   


Q ss_pred             ------hHHHHHHhcccC--cEEEEEcCCCceeeCh
Q 022313          257 ------PFDAYMSLLKVA--GVYVLVGFPSKVKFSP  284 (299)
Q Consensus       257 ------~~~~~~~~l~~~--G~~v~~g~~~~~~~~~  284 (299)
                            ..+..+..|+..  -|++.+|.-++..+++
T Consensus        78 ~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~  113 (211)
T COG2910          78 DELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDE  113 (211)
T ss_pred             hHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcC
Confidence                  234466777774  4788887664444333

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.55  E-value=0.025  Score=47.46  Aligned_cols=95  Identities=26%  Similarity=0.295  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHH---hcCCCE--EEeCCCHHHHHHhcCCccEEEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALS---LLGADK--FVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      ++++++||-+|+|. |..++.+++..+.  +|+.++.+++..+.+++   +.|.+.  ++..+..+.. .....||+|+-
T Consensus        75 ~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii~  152 (215)
T TIGR00080        75 LKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIYV  152 (215)
T ss_pred             CCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEEE
Confidence            48999999999864 6677777776543  69999999887766543   334322  2222211111 11257999986


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEE
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ............+.|+++|+++..
T Consensus       153 ~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       153 TAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             cCCcccccHHHHHhcCcCcEEEEE
Confidence            655555577888999999998765

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.55  E-value=0.059  Score=46.46  Aligned_cols=98  Identities=12%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHhcC-CC-EE--EeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTS---TSKKEEALSLLG-AD-KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~---~~~~~~~~~~~g-~~-~v--~~~~~~~~~~~~-------~  242 (299)
                      .+++++|.|+   +++|.+.++.+...|++|+++.++   .++.+++.+++. .. ..  .|-.+.+.+.++       .
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            5788999986   599999999999999999998764   344555545542 11 11  244444443322       2


Q ss_pred             CCccEEEEcCCCc-------h----------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          243 KSLDFIIDTASGD-------H----------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       243 ~~~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++|+++++.|..       .                      ..+.+++.++++|+++.++..
T Consensus        86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~  149 (257)
T PRK08594         86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYL  149 (257)
T ss_pred             CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEccc
Confidence            6799999987621       0                      123445566778999988776

>PRK00811 spermidine synthase; Provisional

Probab=96.54  E-value=0.04  Score=48.42  Aligned_cols=95  Identities=20%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC-------C---EEEeCCCHHHHHHhcCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA-------D---KFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~-------~---~v~~~~~~~~~~~~~~~~d~  247 (299)
                      .+.++||++|+|. |..+..++++.+. +|.+++.+++-.+.+++.+..       +   +++..+....+....+.||+
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            4567899998865 6666677776554 899999998887777544431       1   23333333444444578999


Q ss_pred             EEEcCCCc----------hhHHHHHHhcccCcEEEEE
Q 022313          248 IIDTASGD----------HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       248 v~d~~g~~----------~~~~~~~~~l~~~G~~v~~  274 (299)
                      |+-....+          ..++.+.+.|+++|.++..
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            98754322          2356788999999999875

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.022  Score=49.69  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.+..+.. ..  .+..+.+.+.++       .+++|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            3578999998 99999999999989999999999988877764443321 11  244444443332       2578999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        83 v~~ag~   88 (277)
T PRK06180         83 VNNAGY   88 (277)
T ss_pred             EECCCc
Confidence            999885

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.53  E-value=0.024  Score=49.46  Aligned_cols=95  Identities=18%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++...---.|++|.|+|. +.+|.-.+.++...+++|++.......                     +
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~---------------------l  195 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRD---------------------L  195 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCC---------------------H
Confidence            467776776666766554468999999998 566999999999999999886543222                     2


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+..|+|+-++|.+..+..  ++++++..++++|..
T Consensus       196 ~~~~~~ADIVV~avG~~~~i~~--~~ik~gavVIDVGin  232 (285)
T PRK14189        196 AAHTRQADIVVAAVGKRNVLTA--DMVKPGATVIDVGMN  232 (285)
T ss_pred             HHHhhhCCEEEEcCCCcCccCH--HHcCCCCEEEEcccc
Confidence            2333668999999998774443  889999999999966

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.51  E-value=0.0053  Score=45.23  Aligned_cols=89  Identities=19%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -++++|||+|+|.+|..-++.+...|++|+++....   +.. +  +.-..... .   .++.-.++|+|+-+++.+..-
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~-~--~~i~~~~~-~---~~~~l~~~~lV~~at~d~~~n   74 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFS-E--GLIQLIRR-E---FEEDLDGADLVFAATDDPELN   74 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHH-H--TSCEEEES-S----GGGCTTESEEEE-SS-HHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhh-h--hHHHHHhh-h---HHHHHhhheEEEecCCCHHHH
Confidence            367899999999999999999999999999999886   222 1  21112211 1   112237799999999998855


Q ss_pred             HHHHHhcccCcEEEEEcCC
Q 022313          259 DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~  277 (299)
                      +...+..+..|..+.+...
T Consensus        75 ~~i~~~a~~~~i~vn~~D~   93 (103)
T PF13241_consen   75 EAIYADARARGILVNVVDD   93 (103)
T ss_dssp             HHHHHHHHHTTSEEEETT-
T ss_pred             HHHHHHHhhCCEEEEECCC
Confidence            5666666778888877654

>PRK06484 short chain dehydrogenase; Validated

Probab=96.51  E-value=0.021  Score=54.56  Aligned_cols=76  Identities=24%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE---EEeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK---FVVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  247 (299)
                      .+++++||.|+ +++|...++.+...|++|++++++.++.+.+.++++...   ..|..+.+.+.++       .+++|+
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            36789999998 899999999999999999999999888887767776432   2344454443332       267999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++++.|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999874

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.019  Score=49.20  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-EE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-FV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v~--~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.+. .+  |..+.+.+.++       .+++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999998 89999999999999999999999988776654433   3222 22  33444333322       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.02  Score=49.99  Aligned_cols=75  Identities=20%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...+..+...|++|++++++.++.+++.+++   +... .  .|..+.+.+.++       .+++
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999987 89999999999999999999999887766554443   3221 1  234444443332       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++++.|-
T Consensus        85 d~li~nAg~   93 (275)
T PRK05876         85 DVVFSNAGI   93 (275)
T ss_pred             CEEEECCCc
Confidence            999999883

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.50  E-value=0.013  Score=52.25  Aligned_cols=74  Identities=26%  Similarity=0.355  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---C-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---D-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...++.+...|++|++++++.++.+.+.+++..   . .+  .|..+.+.+.++       .+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            5788999988 9999999999888999999999998877666555531   1 12  244444443332       2469


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |++++++|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999987

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.017  Score=49.52  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +..   ...|..+.+.+..+       .++
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            35788999998 89999999999999999999999887766654443   221   12244444433221       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999998874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.50  E-value=0.018  Score=51.91  Aligned_cols=76  Identities=22%  Similarity=0.354  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch---------------------HH----HHHHHhcCCC-EE---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS---------------------KK----EEALSLLGAD-KF---  229 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~---------------------~~----~~~~~~~g~~-~v---  229 (299)
                      ...+|+|+|+|++|..++..+.+.|. ++++++.+.-                     +.    +.+ +++..+ .+   
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l-~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHL-RKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHH-HHHCCCcEEEEE
Confidence            44679999999999999999999998 7888877631                     11    122 333321 11   


Q ss_pred             EeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          230 VVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       230 ~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      ...-+.+.+.++-.++|+|+|++.+..
T Consensus       102 ~~~~~~~~~~~~~~~~DlVid~~D~~~  128 (338)
T PRK12475        102 VTDVTVEELEELVKEVDLIIDATDNFD  128 (338)
T ss_pred             eccCCHHHHHHHhcCCCEEEEcCCCHH
Confidence            111223455566688999999998866

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.03  Score=48.16  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=53.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC---EE--EeCCCHHHHHHh-------cCCccE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD---KF--VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v--~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +++++|.|+ |++|...++.+...|++|+++++++++.+.+.+++...   ..  .|..+.+.+.+.       .+.+|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            468999987 99999999999999999999999988877665544321   11  244444444332       256899


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        82 lv~~ag~   88 (257)
T PRK07024         82 VIANAGI   88 (257)
T ss_pred             EEECCCc
Confidence            9998873

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.49  E-value=0.018  Score=50.37  Aligned_cols=76  Identities=24%  Similarity=0.204  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE-------eCCCHHH----HHH---hc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV-------VSSDLEQ----MKA---LG  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~-------~~~~~~~----~~~---~~  242 (299)
                      ++...++|.|. .++|++.+..++..|+.|.++.|+.+++..++++++.. .+.       |..+-+.    +++   +.
T Consensus        31 k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~  110 (331)
T KOG1210|consen   31 KPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLE  110 (331)
T ss_pred             CccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhcc
Confidence            55578889876 89999999999999999999999999999998777621 111       1111111    122   23


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      ..+|.+|.|.|.
T Consensus       111 ~~~d~l~~cAG~  122 (331)
T KOG1210|consen  111 GPIDNLFCCAGV  122 (331)
T ss_pred             CCcceEEEecCc
Confidence            689999999994

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.49  E-value=0.025  Score=47.88  Aligned_cols=82  Identities=21%  Similarity=0.336  Sum_probs=63.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-hcCCCEE-EeCCCHHHHHHhc-CCccEEEEcCCCchhHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS-LLGADKF-VVSSDLEQMKALG-KSLDFIIDTASGDHPFD  259 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~  259 (299)
                      +++|+|+|.+|...++.+...|..|+++++++++.++... ++....+ .+..+.+.+.+++ ..+|+++-+++... .+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~-~N   80 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE-VN   80 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH-HH
Confidence            5889999999999999999999999999999999887433 3553333 3555677788875 88999999999866 44


Q ss_pred             HHHHhc
Q 022313          260 AYMSLL  265 (299)
Q Consensus       260 ~~~~~l  265 (299)
                      ..+-++
T Consensus        81 ~i~~~l   86 (225)
T COG0569          81 SVLALL   86 (225)
T ss_pred             HHHHHH
Confidence            444433

>PRK06194 hypothetical protein; Provisional

Probab=96.49  E-value=0.015  Score=50.78  Aligned_cols=75  Identities=25%  Similarity=0.381  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-EE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-FV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v~--~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.+..+...+++   +... ++  |..+.+.+.++       .+++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999987 99999999999989999999999877665554433   3221 12  33344444332       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999999985

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.47  E-value=0.025  Score=40.78  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=59.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC---CeEEEE-eCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG---LNVTVL-STSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g---~~v~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      +|.|+|+|.+|.+.++-....|   .+|+++ .+++++.+++.++++..... .+..+    ..+..|+||-++.... +
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~----~~~~advvilav~p~~-~   74 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA-DDNEE----AAQEADVVILAVKPQQ-L   74 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES-EEHHH----HHHHTSEEEE-S-GGG-H
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccccc-CChHH----hhccCCEEEEEECHHH-H
Confidence            4778899999999999999999   788855 99999999998888854332 11122    2236899999999877 5


Q ss_pred             HHHHHhc---ccCcEEEEE
Q 022313          259 DAYMSLL---KVAGVYVLV  274 (299)
Q Consensus       259 ~~~~~~l---~~~G~~v~~  274 (299)
                      ...++.+   .++..++.+
T Consensus        75 ~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   75 PEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHhhccCCCEEEEe
Confidence            5555443   444555544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK01581 speE spermidine synthase; Validated

Probab=96.47  E-value=0.055  Score=48.86  Aligned_cols=96  Identities=19%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC-------------CCEEEeCCCHHHHHHhcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG-------------ADKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g-------------~~~v~~~~~~~~~~~~~~~  244 (299)
                      ...++|||+|+| .|.++..+++..+ .+|++++.+++-.+.++ ++.             .-+++..+..+.+....+.
T Consensus       149 ~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr-~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        149 IDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMAR-NVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            455799999976 4666677777654 48999999888777774 321             0112223323444555578


Q ss_pred             ccEEEEcCCCc-----------hhHHHHHHhcccCcEEEEEcC
Q 022313          245 LDFIIDTASGD-----------HPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       245 ~d~v~d~~g~~-----------~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      ||+||-....+           ..++.+.+.|+++|.++.-..
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99998765432           246788899999999877643

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.47  E-value=0.028  Score=48.93  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGLG---GLGHMAVKFGKAFGLNVTVLSTSTSK---KEEALSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~g---~~G~~a~~~a~~~g~~v~~~~~~~~~---~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|++   ++|.+.++.+...|++|+++.++++.   .+.+.++.|....+  |-.+.+.+.++       .+.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            56889999984   89999999999999999998876532   23333344533222  44444444332       267


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        86 iD~lVnnAG~   95 (271)
T PRK06505         86 LDFVVHAIGF   95 (271)
T ss_pred             CCEEEECCcc
Confidence            9999999883

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.46  E-value=0.095  Score=39.08  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=63.6

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchh---H
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHP---F  258 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~---~  258 (299)
                      |+|.|.|.+|...++.++..+.+|++++.+++..+.+ ++.|...+. +..+.+.+++.. ..+|.++-+++....   .
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-REEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-HhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence            5788999999999999999666999999999998888 466643332 444566677665 789999988887552   2


Q ss_pred             HHHHHhcccCcEEEEE
Q 022313          259 DAYMSLLKVAGVYVLV  274 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~  274 (299)
                      ...++.+.+..+++..
T Consensus        80 ~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   80 ALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHCCCCeEEEE
Confidence            2233445556666654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.46  E-value=0.033  Score=49.03  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=72.2

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHHhcCCCEEEeCCCHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALSLLGADKFVVSSDLE  236 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~  236 (299)
                      ..+||...+.+..++....--.|++|.|+|. +.+|.-.+.++...|+.|++.. ++.+                     
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~---------------------  194 (296)
T PRK14188        136 ALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD---------------------  194 (296)
T ss_pred             CCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC---------------------
Confidence            3567777777766766544368999999995 8999999999999999999984 5431                     


Q ss_pred             HHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          237 QMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +.+..+..|+|+-++|.+..+...+  ++++..++++|..
T Consensus       195 -l~e~~~~ADIVIsavg~~~~v~~~~--lk~GavVIDvGin  232 (296)
T PRK14188        195 -LPAVCRRADILVAAVGRPEMVKGDW--IKPGATVIDVGIN  232 (296)
T ss_pred             -HHHHHhcCCEEEEecCChhhcchhe--ecCCCEEEEcCCc
Confidence             1233356899999999887565554  8999999999876

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.084  Score=44.84  Aligned_cols=72  Identities=17%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE--EEeCCCHHHHHHh----cCCccEEEEcCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK--FVVSSDLEQMKAL----GKSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~----~~~~d~v~d~~g  253 (299)
                      ++++|.|+ |++|...+..+...|++|+++++++++.+++.++.....  ..|-.+.+.+.++    ....|.++.+.|
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag   80 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG   80 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence            56899987 999999888888889999999999888777643322112  2344455544433    234677776665

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.019  Score=49.96  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C-C-CEEEeCCCHHHHHH-------hcCCc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G-A-DKFVVSSDLEQMKA-------LGKSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g-~-~~v~~~~~~~~~~~-------~~~~~  245 (299)
                      -+|+.|||.|+ +++|.+.++-....|+++++.+.+++..++-.++.   | + ....|-.+.+.+.+       -.+.+
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V  115 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV  115 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence            57899999988 69999888888888999999998877655543333   4 1 23445555444332       23789


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |++++++|
T Consensus       116 ~ILVNNAG  123 (300)
T KOG1201|consen  116 DILVNNAG  123 (300)
T ss_pred             eEEEeccc
Confidence            99999999

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.43  E-value=0.023  Score=47.94  Aligned_cols=94  Identities=17%  Similarity=0.051  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-----------------EeCCCHHHHHHh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-----------------VVSSDLEQMKAL  241 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-----------------~~~~~~~~~~~~  241 (299)
                      .++.+||+.|+|. |.-++-+|. .|++|++++.++...+.+.++.+....                 ...+-.+...+.
T Consensus        36 ~~~~rvL~~gCG~-G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGK-SLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCC-hHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            5678999999874 777777775 699999999999988876555443211                 000000000011


Q ss_pred             cCCccEEEEcCCC--------chhHHHHHHhcccCcEEEEE
Q 022313          242 GKSLDFIIDTASG--------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       242 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ...||.|+|..--        ...+..+.+.|+++|+++.+
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            2468999986531        22477888999999875543

>PLN02253 xanthoxin dehydrogenase

Probab=96.43  E-value=0.024  Score=49.38  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEE--EeCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKF--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      .++++||.|+ |++|...++.+...|++|++++++++..+.+.++++.   ...  .|..+.+.+.++       .+++|
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id   96 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD   96 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4688999987 8999999998888999999999887766655455432   112  244454444332       25799


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        97 ~li~~Ag~  104 (280)
T PLN02253         97 IMVNNAGL  104 (280)
T ss_pred             EEEECCCc
Confidence            99998874

>PRK07574 formate dehydrogenase; Provisional

Probab=96.41  E-value=0.029  Score=51.38  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH-
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF-  258 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-  258 (299)
                      .|++|.|+|.|.+|...++.++.+|.+|++++++....+.. +.++....      ..+.++....|+|+.++....-. 
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-~~~g~~~~------~~l~ell~~aDvV~l~lPlt~~T~  263 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-QELGLTYH------VSFDSLVSVCDVVTIHCPLHPETE  263 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-hhcCceec------CCHHHHhhcCCEEEEcCCCCHHHH
Confidence            56889999999999999999999999999999876333322 34443211      12334446678877777643211 


Q ss_pred             ----HHHHHhcccCcEEEEEc
Q 022313          259 ----DAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       259 ----~~~~~~l~~~G~~v~~g  275 (299)
                          ...+..|+++..+|.++
T Consensus       264 ~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        264 HLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             HHhCHHHHhcCCCCcEEEECC
Confidence                33566777777776665

>PLN03075 nicotianamine synthase; Provisional

Probab=96.39  E-value=0.042  Score=48.31  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCC----CEEE--eCCCHHHHHHhc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGA----DKFV--VSSDLEQMKALG  242 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~----~~v~--~~~~~~~~~~~~  242 (299)
                      .+..... .+.++|+-+|+|+.++.++.+++..  +.+++.++.+++..+.+++.+..    ..-+  ...+........
T Consensus       115 ~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l  193 (296)
T PLN03075        115 LLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL  193 (296)
T ss_pred             HHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc
Confidence            3433433 4779999999999999998888755  34899999999888877554422    1111  111111111113


Q ss_pred             CCccEEEEcC------CC-chhHHHHHHhcccCcEEEEEc
Q 022313          243 KSLDFIIDTA------SG-DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       243 ~~~d~v~d~~------g~-~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ++||+||-.+      .. ...++...+.|++||.++.-.
T Consensus       194 ~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        194 KEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            6899998874      11 235788899999999988663

>PRK08589 short chain dehydrogenase; Validated

Probab=96.39  E-value=0.028  Score=48.90  Aligned_cols=74  Identities=22%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-E--EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-K--FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ +++|...++.+...|++|++++++ ++.+...+++   +.. .  ..|..+.+.+.++       .+++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            5789999998 899999999998899999999998 5554443333   321 1  2244444433322       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR00417 speE spermidine synthase

Probab=96.39  E-value=0.057  Score=47.11  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC---------CEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA---------DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      +..++||++|+|. |..+..+++.... ++.+++.+++-.+.+.+.+..         -+++..+..+.++...+.||+|
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence            4456999998865 4455566665534 899999887776666443321         1222222233344445789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-....          ...++.+.+.|+++|.++...
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            764431          123567889999999998763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK08017 oxidoreductase; Provisional

Probab=96.38  E-value=0.035  Score=47.51  Aligned_cols=72  Identities=21%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHH----h----cCCccEEEEc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKA----L----GKSLDFIIDT  251 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~----~----~~~~d~v~d~  251 (299)
                      ++++|.|+ |.+|...++.+...|++|++++++.++.+.+ ++.+.+.+ .|..+.+.+..    .    .+++|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM-NSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH-HhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999998 9999999999999999999999998887776 45665433 24444433222    1    2568898888


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            773

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.026  Score=47.59  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh----cCCccEEEEcCC
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL----GKSLDFIIDTAS  253 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~----~~~~d~v~d~~g  253 (299)
                      +++|.|+ |++|...++.+...|++|+++++++++.+.+.++.+...+ .|..+.+.+.++    .+.+|+++++.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence            4889987 8999999999998999999999998887776556554332 244455444332    246899999865

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.35  E-value=0.04  Score=47.95  Aligned_cols=96  Identities=18%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+.+..++....--.|++|.|+|. ..+|.-.+.++...+++|++..+....++                   
T Consensus       130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------  190 (279)
T PRK14178        130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------  190 (279)
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------
Confidence            3467777777777766654468999999998 48999999999999999988876543332                   


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        +..+.+|+++.++|.+..+..  +.++++..++++|..
T Consensus       191 --~~~~~ADIvI~Avgk~~lv~~--~~vk~GavVIDVgi~  226 (279)
T PRK14178        191 --AELRQADILVSAAGKAGFITP--DMVKPGATVIDVGIN  226 (279)
T ss_pred             --HHHhhCCEEEECCCcccccCH--HHcCCCcEEEEeecc
Confidence              333668999999986654433  347999999999865

>PRK07985 oxidoreductase; Provisional

Probab=96.34  E-value=0.11  Score=45.82  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc--hHHHHHH---HhcCCCE-E--EeCCCHHHHHHh-------c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST--SKKEEAL---SLLGADK-F--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~--~~~~~~~---~~~g~~~-v--~~~~~~~~~~~~-------~  242 (299)
                      -+++++||.|+ |++|...++.+...|++|+++.++.  +..+.+.   ++.+... +  .|..+.+.+.++       .
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35678999998 8999999999999999999877543  2233331   2334221 1  244444433222       2


Q ss_pred             CCccEEEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          243 KSLDFIIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       243 ~~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++|+++.+.|..                          ...+.+++.++.+|+++.++..
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            6789999988731                          1233455556678999988766

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.34  E-value=0.042  Score=47.13  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~-------~~~~d~v  248 (299)
                      .++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++.. ..+  |-.+.+.+.++       .+++|++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999998 99999999999999999999999988877765555422 122  33343333222       2578999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        85 i~~ag~   90 (257)
T PRK07067         85 FNNAAL   90 (257)
T ss_pred             EECCCc
Confidence            998873

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.03  Score=47.08  Aligned_cols=72  Identities=21%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHHh-----cCCccEEEEcCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKAL-----GKSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~-----~~~~d~v~d~~g  253 (299)
                      ++++|.|+ |++|...+..+...|++|+++++++++.+.+ ++++...+  .|..+.+.++++     .+++|+++.+.|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL-QALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH-HhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            46899997 9999999988888999999999998777665 34432222  244444444332     247999998876


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            3

>PRK09242 tropinone reductase; Provisional

Probab=96.33  E-value=0.029  Score=48.18  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-----CCCE-E--EeCCCHHHHHH----h---cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-----GADK-F--VVSSDLEQMKA----L---GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~-v--~~~~~~~~~~~----~---~~  243 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.+..+++.+++     +.+. .  .|..+.+.+.+    +   .+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999998 89999999999999999999999987766654333     2111 1  23334433322    1   26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.+.|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.062  Score=46.85  Aligned_cols=96  Identities=24%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh------cCCccEE
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL------GKSLDFI  248 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~------~~~~d~v  248 (299)
                      +++++|.|+|++|...+..+. .|++|+++++++++.+.+.+++   +.+ .+  .|..+.+.+..+      .+++|++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l   80 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL   80 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence            357888899999999998885 7999999999877665543333   322 12  244444333222      2579999


Q ss_pred             EEcCCCch------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDH------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.++|...                  ..+.+.+.++.+|+++.+...
T Consensus        81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~  127 (275)
T PRK06940         81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQ  127 (275)
T ss_pred             EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence            99998421                  133444556667777777655

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.036  Score=47.41  Aligned_cols=74  Identities=27%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE--E--EeCCCHHHHHHh-------cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK--F--VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v--~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +++++||.|+ |.+|...++.+...|++|+++.++++..+.. ++.....  .  .|..+.+.+.++       .+++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVA-AQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999998 9999999999998999999999987654433 3332111  2  244444433322       257899


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999984

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.028  Score=48.11  Aligned_cols=74  Identities=24%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-CEEE--eCCCHHHHHHh-------cCCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-DKFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++|.|+ |++|...++.+...|++|+++++++++.+.+.+++   +. ..++  |..+.+.+.++       .+++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            468999988 89999999999999999999999887766553333   21 1222  33444443332       25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.30  E-value=0.1  Score=44.73  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE---EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK---FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++.. ..+.++   .+.+.   ..|..+.+.+.++       .+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999988 899999999999999999999987532 222222   23221   2244444333221       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999873

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.30  E-value=0.045  Score=46.30  Aligned_cols=74  Identities=23%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHH----h---cCCccEEEEc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKA----L---GKSLDFIIDT  251 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~----~---~~~~d~v~d~  251 (299)
                      ++++||.|+ +++|...++.+...|++|++++++++......++.+...+ .|..+.+.+.+    +   .+++|+++.+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~   81 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN   81 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence            468999998 8999999999999999999999887654333344553221 23333333322    1   2569999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      .|.
T Consensus        82 ag~   84 (236)
T PRK06483         82 ASD   84 (236)
T ss_pred             Ccc
Confidence            874

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.032  Score=47.23  Aligned_cols=74  Identities=11%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh-------cC-C
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK-F--VVSSDLEQMKAL-------GK-S  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~-~  244 (299)
                      ++++++|.|+ +++|...+..+...|++|+++.+++++.+.+.++   .+.+. .  .+..+.+.++++       -+ .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999998 7999999999999999999999998877665433   34221 1  233444444322       14 7


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|+++.+.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999986

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.029  Score=48.28  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCC-EE--EeCCCHHHHHHh---cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GAD-KF--VVSSDLEQMKAL---GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~---~~~~d~v  248 (299)
                      ++++++|.|+ +++|...++.+...|++|+++++++++.+.+.+++    +.. ..  .|..+.+.+.++   .+.+|++
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l   85 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL   85 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            4789999998 89999999999889999999999887766653333    221 22  233444444332   2679999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        86 v~~ag~   91 (259)
T PRK06125         86 VNNAGA   91 (259)
T ss_pred             EECCCC
Confidence            998873

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.035  Score=47.29  Aligned_cols=75  Identities=24%  Similarity=0.279  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-E--EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-K--FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~~  245 (299)
                      .+++++|.|+ |.+|...++.+...|++|++++++++..+.+.+++   +.. .  ..|..+.+.+.++       .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5678999998 99999999999989999999999876655443332   211 1  2244444433222       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (250)
T PRK07774         85 DYLVNNAAI   93 (250)
T ss_pred             CEEEECCCC
Confidence            999999883

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.24  E-value=0.045  Score=47.16  Aligned_cols=98  Identities=18%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGLG---GLGHMAVKFGKAFGLNVTVLSTSTSK---KEEALSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~g---~~G~~a~~~a~~~g~~v~~~~~~~~~---~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|++   ++|.+.++.+...|++|++++++++.   .+++.++++....+  |-.+.+.+.++       .+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            57899999863   89999999999999999999887543   34443444432222  33344433322       257


Q ss_pred             ccEEEEcCCCch-----------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGDH-----------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++++.|...                             ..+.++..++.+|+++.++..
T Consensus        89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~  150 (258)
T PRK07533         89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYY  150 (258)
T ss_pred             CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecc
Confidence            899999987310                             124455667777888887655

>PRK08643 acetoin reductase; Validated

Probab=96.24  E-value=0.031  Score=47.87  Aligned_cols=74  Identities=23%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|..+.+.+.++       .+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            568999988 89999999999999999999999887766554333   2221 1  234444433322       25799


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.23  E-value=0.028  Score=50.46  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-------CCC---EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-------GAD---KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-------g~~---~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      -+|.|+|+|.+|.+.+..+...|.+|.++.+++++.+.+.+..       |..   .+....+   ..+..+..|+|+.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~---~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTAD---PEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCC---HHHHHcCCCEEEEE
Confidence            4699999999999999999988999999999888777664221       210   0111112   22334678999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcC
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      +.... .+.+++.++++-.++.+..
T Consensus        82 v~~~~-~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         82 VPSKA-LRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             CchHH-HHHHHHhcCcCCEEEEEee
Confidence            99987 7888888888877776644

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.024  Score=48.38  Aligned_cols=75  Identities=23%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--CCC-EEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL--GAD-KFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~--g~~-~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++++|.|+ |.+|...++.+...|++|+++.++.+..+...+++  +.. .++  |..+.+.+.++       .+++|
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678999988 99999999988888999999999987766554443  221 222  44444444332       25899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        84 ~vi~~ag~   91 (252)
T PRK06138         84 VLVNNAGF   91 (252)
T ss_pred             EEEECCCC
Confidence            99999884

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.22  E-value=0.027  Score=44.86  Aligned_cols=84  Identities=17%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.|++|+|+|+|.+|..-++.+...|++|++++  ++..+++ ++++.-... .+..+  ..--.++|+|+-+++... .
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l-~~l~~i~~~-~~~~~--~~dl~~a~lViaaT~d~e-~   83 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEM-KELPYITWK-QKTFS--NDDIKDAHLIYAATNQHA-V   83 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHH-HhccCcEEE-ecccC--hhcCCCceEEEECCCCHH-H
Confidence            467899999999999999998888999999885  3344444 244422221 11100  111267899999999887 5


Q ss_pred             HHHHHhcccCc
Q 022313          259 DAYMSLLKVAG  269 (299)
Q Consensus       259 ~~~~~~l~~~G  269 (299)
                      +..+...+..+
T Consensus        84 N~~i~~~a~~~   94 (157)
T PRK06719         84 NMMVKQAAHDF   94 (157)
T ss_pred             HHHHHHHHHHC
Confidence            55554444333

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.21  E-value=0.048  Score=47.51  Aligned_cols=99  Identities=17%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCCCEE--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTST---SKKEEALSLLGADKF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~---~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~  243 (299)
                      -.++++||.|+   +++|++.++.+...|++|+++.+++   ++.+++.++++....  .|-.+.+.++++       .+
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   87 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWG   87 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcC
Confidence            45688999986   5899999999999999999887763   344445455553222  244444443332       25


Q ss_pred             CccEEEEcCCCc-----------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-----------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|+++++.|..                             ...+.+++.++.+|+++.++..
T Consensus        88 ~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~  150 (272)
T PRK08159         88 KLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYY  150 (272)
T ss_pred             CCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            789999998731                             1123334566677898888765

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.20  E-value=0.028  Score=45.00  Aligned_cols=89  Identities=22%  Similarity=0.282  Sum_probs=56.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      .+|-++|.|.+|...++-+...|.+|++.++++++.+.+. +.|+...   .+   ..++....|+|+-++.+....+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-~~g~~~~---~s---~~e~~~~~dvvi~~v~~~~~v~~v   74 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-EAGAEVA---DS---PAEAAEQADVVILCVPDDDAVEAV   74 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-HTTEEEE---SS---HHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-Hhhhhhh---hh---hhhHhhcccceEeecccchhhhhh
Confidence            3688999999999999999999999999999999988884 4463222   11   122223458888887775434443


Q ss_pred             H------HhcccCcEEEEEcCC
Q 022313          262 M------SLLKVAGVYVLVGFP  277 (299)
Q Consensus       262 ~------~~l~~~G~~v~~g~~  277 (299)
                      +      ..++++..+++.+..
T Consensus        75 ~~~~~i~~~l~~g~iiid~sT~   96 (163)
T PF03446_consen   75 LFGENILAGLRPGKIIIDMSTI   96 (163)
T ss_dssp             HHCTTHGGGS-TTEEEEE-SS-
T ss_pred             hhhhHHhhccccceEEEecCCc
Confidence            3      334555566665443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.20  E-value=0.041  Score=47.19  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |.+|...++.+...|++|+++++++++.+++.++   .+.+..   .|..+.+.+.++       .++.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999998 9999999999999999999999998766555433   343221   233444443322       2568


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999998874

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.036  Score=48.11  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC------CCEEE--eCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG------ADKFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g------~~~v~--~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ |.+|...++.+...|++|+++.++.++.+...+++.      .-.++  |..+.+.+..+       .+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999998 899999999999999999999998776554433321      11222  33344333222       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.+.|.
T Consensus        86 ~~d~li~~ag~   96 (276)
T PRK05875         86 RLHGVVHCAGG   96 (276)
T ss_pred             CCCEEEECCCc
Confidence            78999999873

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.041  Score=47.05  Aligned_cols=75  Identities=25%  Similarity=0.352  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...++.+...|++|++++++.++.+.+.+++   +.. ..+  +..+.+.+.++       .+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999987 89999999999999999999999877766554443   321 222  33343333221       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.+.
T Consensus        87 d~li~~ag~   95 (252)
T PRK07035         87 DILVNNAAA   95 (252)
T ss_pred             CEEEECCCc
Confidence            999998873

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.17  E-value=0.056  Score=45.77  Aligned_cols=70  Identities=24%  Similarity=0.274  Sum_probs=54.2

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCC
Q 022313          184 LGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK--KEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       184 vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~--~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      |+|+|+ |.+|...++.+...+.+|.+++|+...  ...+ +..|++.+. +..+.+.+.+.-+++|.||.+++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l-~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQL-QALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHH-HHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhh-hcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            689998 999999999999988899999998743  3444 567875543 455667777666899999999993

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.15  E-value=0.035  Score=49.99  Aligned_cols=88  Identities=23%  Similarity=0.390  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|++|.|+|.|.+|...++.++..|.+|++++++..... . +.++...    .   .+.++-...|+|+.++....   
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~~~~~~~----~---~l~ell~~aDiV~l~lP~t~~T~  219 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-KELGAEY----R---PLEELLRESDFVSLHVPLTKETY  219 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-HHcCCEe----c---CHHHHHhhCCEEEEeCCCChHHh
Confidence            678999999999999999999999999999998754432 2 3444321    1   22333355677777776432   


Q ss_pred             --hHHHHHHhcccCcEEEEEcC
Q 022313          257 --PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g~  276 (299)
                        .-...+..++++..++.++-
T Consensus       220 ~~i~~~~~~~mk~ga~lIN~aR  241 (333)
T PRK13243        220 HMINEERLKLMKPTAILVNTAR  241 (333)
T ss_pred             hccCHHHHhcCCCCeEEEECcC
Confidence              12345667777777776653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.15  E-value=0.048  Score=46.20  Aligned_cols=75  Identities=29%  Similarity=0.374  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |.+|...++.+...|+.|++..++.++.+.+.+..+.. .+  .+-.+.+.++++       .+++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999998 99999999999889999998888877777664555422 12  233344443332       2579999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        85 i~~ag~   90 (245)
T PRK12936         85 VNNAGI   90 (245)
T ss_pred             EECCCC
Confidence            999884

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.15  E-value=0.032  Score=50.04  Aligned_cols=107  Identities=15%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             hhccCCCCCCEEEEEcCChHHHHHHHHHHHC-CC-eEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHhcCCccE
Q 022313          173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF-GL-NVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      +...+ +...++.|+|+|..|.+-+..+... .. +|.+.+++.++.+.+.+++   |.. +....   ...+..++.|+
T Consensus       121 ~~La~-~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~-v~~~~---~~~eav~~aDi  195 (325)
T TIGR02371       121 KYLAR-KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP-VRAAT---DPREAVEGCDI  195 (325)
T ss_pred             HHhCC-CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc-EEEeC---CHHHHhccCCE
Confidence            33444 5668899999999998766555433 33 8999999999887765543   322 11122   22344478999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChh
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPA  285 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~  285 (299)
                      |+-|+.....+ -....++++-.+..+|..  ....++..
T Consensus       196 VitaT~s~~P~-~~~~~l~~g~~v~~vGs~~p~~~Eld~~  234 (325)
T TIGR02371       196 LVTTTPSRKPV-VKADWVSEGTHINAIGADAPGKQELDPE  234 (325)
T ss_pred             EEEecCCCCcE-ecHHHcCCCCEEEecCCCCcccccCCHH
Confidence            99988764411 234578999999999976  44555544

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.15  E-value=0.041  Score=47.36  Aligned_cols=72  Identities=25%  Similarity=0.213  Sum_probs=51.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEEE--eCCCHHHHHHh-------cCCccEEE
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKFV--VSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v~--~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      ++||.|+ +++|...++.+...|++|+++++++++.+.+.+++   +....+  |..+.+.+.++       .+++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899987 89999999999889999999999987766554443   322222  33344443322       26799999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+.|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            99874

>PRK08317 hypothetical protein; Provisional

Probab=96.15  E-value=0.056  Score=45.64  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---CC-CEEEeCCCHHHHHHhcCCccEEE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---GA-DKFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ..+.++.+||-+|+|. |..+..+++..+  .+++.++.+++..+.+.+..   +. ..+... +........+.||+|+
T Consensus        15 ~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~v~   92 (241)
T PRK08317         15 LAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG-DADGLPFPDGSFDAVR   92 (241)
T ss_pred             cCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec-ccccCCCCCCCceEEE
Confidence            3448889999999976 888888888763  58999999988877774431   11 122221 1111111235789887


Q ss_pred             EcC-----CC-chhHHHHHHhcccCcEEEEEcC
Q 022313          250 DTA-----SG-DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       250 d~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      ...     .. ...+..+.++|+++|.++....
T Consensus        93 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         93 SDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             EechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            532     22 2357889999999999987653

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.029  Score=49.67  Aligned_cols=75  Identities=25%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----C-CC-EE--EeCCCHHHHHHh-------c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----G-AD-KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g-~~-~v--~~~~~~~~~~~~-------~  242 (299)
                      ..+++++|.|+ |++|..+++.+...|++|+++.++.++.+.+.+++    + .. .+  .|..+.+.+.++       .
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            46789999998 99999999988888999999999877655433222    1 11 12  244444443332       2


Q ss_pred             CCccEEEEcCC
Q 022313          243 KSLDFIIDTAS  253 (299)
Q Consensus       243 ~~~d~v~d~~g  253 (299)
                      +++|+++.++|
T Consensus        94 ~~iD~li~nAg  104 (306)
T PRK06197         94 PRIDLLINNAG  104 (306)
T ss_pred             CCCCEEEECCc
Confidence            57899999987

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.14  E-value=0.062  Score=46.06  Aligned_cols=75  Identities=16%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCE---EEeCCCHHHHHHh-------cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADK---FVVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +++++||.|+ +++|.+.++.+...|++|+++.++.. +.....++.+...   ..|..+.+.+.++       .+++|+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~   86 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI   86 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999998 89999999999999999998887542 2222223445322   1244444443332       267999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        87 lv~~ag~   93 (251)
T PRK12481         87 LINNAGI   93 (251)
T ss_pred             EEECCCc
Confidence            9999873

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.13  E-value=0.039  Score=47.26  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|-.+.+.+.++       .+++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            5778999998 89999999999999999999999877766554333   2211 1  233444433322       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.041  Score=47.08  Aligned_cols=75  Identities=27%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++++.+.+.+.   .+.. ..  .+..+.+.+.++       .+++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999998 8999999998888999999999988765544332   3322 12  233344333322       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.12  E-value=0.045  Score=47.01  Aligned_cols=75  Identities=25%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |.+|...++.+...|++|++++++.++.+.+.+.+   +.. .+  .|..+.+.+.++       .+++
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i   90 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV   90 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999997 99999999999999999999999887766553332   221 12  244454444321       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |.++.+.|.
T Consensus        91 d~vi~~ag~   99 (259)
T PRK08213         91 DILVNNAGA   99 (259)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.11  E-value=0.039  Score=49.14  Aligned_cols=89  Identities=16%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP-  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  257 (299)
                      -.+++|.|+|.|.+|...++.++.+|.+|++++++.+...      +.+.+.   ....+.++-...|+|+.++..... 
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~------~~~~~~---~~~~l~e~l~~aDvvv~~lPlt~~T  204 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP------GVQSFA---GREELSAFLSQTRVLINLLPNTPET  204 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC------Cceeec---ccccHHHHHhcCCEEEECCCCCHHH
Confidence            4678999999999999999999999999999987643321      112211   112344455667888887775431 


Q ss_pred             ----HHHHHHhcccCcEEEEEcC
Q 022313          258 ----FDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       258 ----~~~~~~~l~~~G~~v~~g~  276 (299)
                          -...++.|+++..++.+|-
T Consensus       205 ~~li~~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        205 VGIINQQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             HHHhHHHHHhcCCCCcEEEECCC
Confidence                2345677888877777763

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.11  E-value=0.04  Score=46.24  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch------------------HHHHHH---HhcCC-CEEE--e-CC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS------------------KKEEAL---SLLGA-DKFV--V-SS  233 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~------------------~~~~~~---~~~g~-~~v~--~-~~  233 (299)
                      +..+|+|+|+|++|...++.+.+.|. ++++++.+.-                  +.+.++   ++++. ..+.  + .-
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i  106 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI  106 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence            44679999999999999999999998 6888876621                  111111   22221 1111  1 11


Q ss_pred             CHHHHHHhcCCccEEEEcCCCchhHHHHHHhccc
Q 022313          234 DLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKV  267 (299)
Q Consensus       234 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  267 (299)
                      +.+...++-+++|+|++|+..........+....
T Consensus       107 ~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~  140 (212)
T PRK08644        107 DEDNIEELFKDCDIVVEAFDNAETKAMLVETVLE  140 (212)
T ss_pred             CHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence            1233334447899999998887633333333333

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.11  E-value=0.034  Score=49.97  Aligned_cols=101  Identities=22%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhc----CCCEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLL----GADKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      +..++++|+|+|..|.+.+..+.. .+. +|.+..+++++.+.+.+++    |.. +....+   +.+.-.+.|+|+.++
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~~d---~~~al~~aDiVi~aT  205 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVARD---VHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEeCC---HHHHHccCCEEEEee
Confidence            455789999999999887776664 455 8999999999888876654    332 222232   223335689999998


Q ss_pred             CCchh-HHHHHHhcccCcEEEEEcCC--CceeeChh
Q 022313          253 SGDHP-FDAYMSLLKVAGVYVLVGFP--SKVKFSPA  285 (299)
Q Consensus       253 g~~~~-~~~~~~~l~~~G~~v~~g~~--~~~~~~~~  285 (299)
                      ..... +..  ..++++-.+..+|..  ....+++.
T Consensus       206 ~s~~p~i~~--~~l~~g~~v~~vg~d~~~~rEld~~  239 (330)
T PRK08291        206 PSEEPILKA--EWLHPGLHVTAMGSDAEHKNEIAPA  239 (330)
T ss_pred             CCCCcEecH--HHcCCCceEEeeCCCCCCcccCCHH
Confidence            87542 222  347788788888876  34444443

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.10  E-value=0.048  Score=47.60  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=71.0

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++....--.|+++.|+|. +.+|.-.+.++...|++|++.-....                     .+
T Consensus       137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~---------------------~l  195 (284)
T PRK14179        137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR---------------------NL  195 (284)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC---------------------CH
Confidence            456666666666665544468999999998 89999999999999999988732211                     12


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+..|+|+-++|.+..+...  .++++..++++|..
T Consensus       196 ~~~~~~ADIVI~avg~~~~v~~~--~ik~GavVIDvgin  232 (284)
T PRK14179        196 AEVARKADILVVAIGRGHFVTKE--FVKEGAVVIDVGMN  232 (284)
T ss_pred             HHHHhhCCEEEEecCccccCCHH--HccCCcEEEEecce
Confidence            23346689999999988766554  49999999999866

>PLN03139 formate dehydrogenase; Provisional

Probab=96.10  E-value=0.034  Score=50.88  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP-  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  257 (299)
                      -.|++|.|+|.|.+|...++.++.+|.+|++++++....+.. ++.|...+      +.+.++....|+|+.++....- 
T Consensus       197 L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-~~~g~~~~------~~l~ell~~sDvV~l~lPlt~~T  269 (386)
T PLN03139        197 LEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-KETGAKFE------EDLDAMLPKCDVVVINTPLTEKT  269 (386)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-hhcCceec------CCHHHHHhhCCEEEEeCCCCHHH
Confidence            367899999999999999999999999999998875333333 34453221      1233343556777776664221 


Q ss_pred             ----HHHHHHhcccCcEEEEEc
Q 022313          258 ----FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ----~~~~~~~l~~~G~~v~~g  275 (299)
                          -...+..|+++..+|.++
T Consensus       270 ~~li~~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        270 RGMFNKERIAKMKKGVLIVNNA  291 (386)
T ss_pred             HHHhCHHHHhhCCCCeEEEECC
Confidence                123556777777666665

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.064  Score=45.97  Aligned_cols=74  Identities=20%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC--E--EEeCCCHHHHHHh-------cCCccEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD--K--FVVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~--~--v~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      ++++||.|+ |.+|...+..+...|++|++++++.++.+.+.+++...  +  ..+..+.+.+...       .+++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999998 89999999988888999999999988777665544311  1  2244444444322       1468999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        82 i~~ag~   87 (257)
T PRK07074         82 VANAGA   87 (257)
T ss_pred             EECCCC
Confidence            999974

>PRK04148 hypothetical protein; Provisional

Probab=96.09  E-value=0.083  Score=40.72  Aligned_cols=88  Identities=20%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      .++.+++++|.| .|...+..+...|..|++++.+++..+.+ ++.+...+.+.--... .++-+++|+++..-..+...
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a-~~~~~~~v~dDlf~p~-~~~y~~a~liysirpp~el~   91 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA-KKLGLNAFVDDLFNPN-LEIYKNAKLIYSIRPPRDLQ   91 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH-HHhCCeEEECcCCCCC-HHHHhcCCEEEEeCCCHHHH
Confidence            456889999999 78755555557899999999999998888 4556543332111000 12336788888877776644


Q ss_pred             HHHHHhcccCc
Q 022313          259 DAYMSLLKVAG  269 (299)
Q Consensus       259 ~~~~~~l~~~G  269 (299)
                      ...++..+.-+
T Consensus        92 ~~~~~la~~~~  102 (134)
T PRK04148         92 PFILELAKKIN  102 (134)
T ss_pred             HHHHHHHHHcC
Confidence            44444444433

>PLN02928 oxidoreductase family protein

Probab=96.09  E-value=0.034  Score=50.33  Aligned_cols=95  Identities=20%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-----CCEEEe-CCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-----ADKFVV-SSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-----~~~v~~-~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      -.|+++.|+|.|.+|..+++.++.+|.+|++++++.......  .++     ...... ......+.++-...|+|+.++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPED--GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhh--hhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            467899999999999999999999999999998874322111  110     000000 001223445556678888877


Q ss_pred             CCch-----hHHHHHHhcccCcEEEEEc
Q 022313          253 SGDH-----PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       253 g~~~-----~~~~~~~~l~~~G~~v~~g  275 (299)
                      ....     .-...+..|+++..+|.+|
T Consensus       235 Plt~~T~~li~~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        235 TLTKETAGIVNDEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CCChHhhcccCHHHHhcCCCCeEEEECC
Confidence            6422     2345677888888887775

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.066  Score=46.48  Aligned_cols=73  Identities=16%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEEEE
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++||.|+ |.+|...++.+...|++|++++++++..+.+.+..+.. .+  .|..+.+.+.++       .+++|++|.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57999987 99999999998889999999999988777765444422 11  244444433321       257899999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        83 ~ag~   86 (276)
T PRK06482         83 NAGY   86 (276)
T ss_pred             CCCC
Confidence            9874

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.08  E-value=0.048  Score=46.59  Aligned_cols=72  Identities=15%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccEEEEc
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDFIIDT  251 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~v~d~  251 (299)
                      +++|.|+ |++|...+..+...|++|+++++++++.+.+.+.++... .  .|-.+.+.+.+.       .++.|.++.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6889987 999999999999999999999999887777655555321 1  234444433322       2579999998


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      +|.
T Consensus        82 ag~   84 (248)
T PRK10538         82 AGL   84 (248)
T ss_pred             CCc
Confidence            874

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.06  E-value=0.068  Score=46.71  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ...||...+....++....--.|++++|+|. ..+|.-.+.++...+++|++.......+                    
T Consensus       142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l--------------------  201 (287)
T PRK14176        142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDL--------------------  201 (287)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCH--------------------
Confidence            3567777777777766654358999999998 4699999999999999998877443222                    


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       ++..+.+|+++.++|-+..+  -.+.++++..++++|..
T Consensus       202 -~~~~~~ADIvv~AvG~p~~i--~~~~vk~gavVIDvGin  238 (287)
T PRK14176        202 -KKYTLDADILVVATGVKHLI--KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             -HHHHhhCCEEEEccCCcccc--CHHHcCCCcEEEEeccc
Confidence             22336688999999987744  34589999999999975

>PRK06720 hypothetical protein; Provisional

Probab=96.06  E-value=0.061  Score=43.41  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ +++|...+..+...|++|++++++.+..+...+++   +.. ..+  +..+.+.+.++       -++.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999988 78999999988889999999998877654433332   422 122  33333333321       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        95 DilVnnAG~  103 (169)
T PRK06720         95 DMLFQNAGL  103 (169)
T ss_pred             CEEEECCCc
Confidence            999999884

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.06  E-value=0.072  Score=44.56  Aligned_cols=95  Identities=15%  Similarity=0.049  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST-SKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -++++|+|+|+|.+|..=+.+....|++|+++...- .+...+.++.+.+.+-..-+.    +...++++||-++++...
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~----~~~~~~~lviaAt~d~~l   85 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDA----EDLDDAFLVIAATDDEEL   85 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccCh----hhhcCceEEEEeCCCHHH
Confidence            467899999999999999999999999999998776 455555444332222111111    112349999999999885


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      -+...+..++.+.++.+...
T Consensus        86 n~~i~~~a~~~~i~vNv~D~  105 (210)
T COG1648          86 NERIAKAARERRILVNVVDD  105 (210)
T ss_pred             HHHHHHHHHHhCCceeccCC
Confidence            66677777777877766544

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.05  E-value=0.057  Score=46.65  Aligned_cols=75  Identities=15%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHhcCCCEE--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTS---KKEEALSLLGADKF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~  243 (299)
                      -++++++|.|+ +  ++|.+.++.+...|++|++..+++.   ..+++.++.|....  .|-.+.+.+.++       .+
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35788999988 4  7999999888888999999887632   23333334453332  344454443332       26


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      .+|+++++.|
T Consensus        86 ~iDilVnnag   95 (260)
T PRK06603         86 SFDFLLHGMA   95 (260)
T ss_pred             CccEEEEccc
Confidence            7999999887

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.05  E-value=0.066  Score=46.56  Aligned_cols=74  Identities=24%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ |++|...++.+...|++|++++++++..+.+.+++   +.. ..  .|..+.+.+..+       .+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999987 89999999999999999999999877665554333   321 12  233344333322       2579


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |+++.++|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.053  Score=45.98  Aligned_cols=76  Identities=17%  Similarity=0.130  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      .+.++++|.|+ |.+|...+..+...|++|+++++++++.+.+.+++   +.. .++  |..+.+.+..+       .++
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45678999987 99999999999999999999999887765553332   211 122  33344333222       256


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      .|+++.+.|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            8999999884

>PRK07069 short chain dehydrogenase; Validated

Probab=96.04  E-value=0.12  Score=44.07  Aligned_cols=94  Identities=16%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC-chHHHHHHHhcC----CCE----EEeCCCHHHHHHh-------cCCcc
Q 022313          184 LGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS-TSKKEEALSLLG----ADK----FVVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       184 vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~-~~~~~~~~~~~g----~~~----v~~~~~~~~~~~~-------~~~~d  246 (299)
                      ++|.|+ |++|...++.+...|++|++++++ .+..+++.+++.    ...    ..|..+.+.+.++       .++.|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            788887 999999999998899999999987 555555433332    111    1244444443322       25789


Q ss_pred             EEEEcCCCch-------------------------hHHHHHHhccc--CcEEEEEcCC
Q 022313          247 FIIDTASGDH-------------------------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      +++.+.|...                         ..+.+++.++.  .|+++.++..
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~  139 (251)
T PRK07069         82 VLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSV  139 (251)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecCh
Confidence            9999987321                         23445555543  3788888766

>PRK03612 spermidine synthase; Provisional

Probab=96.03  E-value=0.073  Score=50.96  Aligned_cols=96  Identities=19%  Similarity=0.170  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHh--cC----------CCEEEeCCCHHHHHHhcCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSL--LG----------ADKFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~--~g----------~~~v~~~~~~~~~~~~~~~~  245 (299)
                      ++.++||++|+|. |..+..++++.. .+|++++.+++-.+.+++.  +.          .-+++..+..+.+++..+.|
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4568899998863 556666666544 5999999998888877541  11          11233333334444455789


Q ss_pred             cEEEEcCCCc-----------hhHHHHHHhcccCcEEEEEc
Q 022313          246 DFIIDTASGD-----------HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       246 d~v~d~~g~~-----------~~~~~~~~~l~~~G~~v~~g  275 (299)
                      |+|+-....+           ..++.+.+.|+++|.++.-.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9998755432           23678889999999988653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.03  E-value=0.054  Score=49.63  Aligned_cols=77  Identities=22%  Similarity=0.293  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC-------------------chHHHHHHHhc---C-CCEEEeC---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS-------------------TSKKEEALSLL---G-ADKFVVS---  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~-------------------~~~~~~~~~~~---g-~~~v~~~---  232 (299)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+                   ..+.+.+++++   . ...+...   
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            55789999999999999999999998 78888876                   22333322222   2 1222111   


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCch
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      -+.+.+.++-+++|+|++|+.+..
T Consensus       214 ~~~~~~~~~~~~~D~Vv~~~d~~~  237 (376)
T PRK08762        214 VTSDNVEALLQDVDVVVDGADNFP  237 (376)
T ss_pred             CChHHHHHHHhCCCEEEECCCCHH
Confidence            122344444578999999999876

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.02  E-value=0.035  Score=47.06  Aligned_cols=75  Identities=24%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      .+++++|.|+ |.+|...+..+...|++|+++++++++.+++.+++   +.. .++  +..+.+.+.++       .+++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            3578999987 89999999988889999999999887665543332   221 122  33344433322       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++|.+.|.
T Consensus        86 d~vi~~ag~   94 (239)
T PRK07666         86 DILINNAGI   94 (239)
T ss_pred             cEEEEcCcc
Confidence            999998874

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.02  E-value=0.054  Score=46.40  Aligned_cols=76  Identities=22%  Similarity=0.262  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC-CEEE--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA-DKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      -++++++|.|+ |.+|...++.+...|++|++++++++..+.+.++   .+. ...+  |..+.+.+..+       .++
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            36889999998 8999999998888999999999987766554332   332 1122  44444433221       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|.++.+.|.
T Consensus        89 id~vi~~ag~   98 (256)
T PRK06124         89 LDILVNNVGA   98 (256)
T ss_pred             CCEEEECCCC
Confidence            8999998884

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.02  E-value=0.043  Score=49.49  Aligned_cols=77  Identities=26%  Similarity=0.374  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch---------------------HHHHH---HHhcCCCE-E--Ee
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS---------------------KKEEA---LSLLGADK-F--VV  231 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~---------------------~~~~~---~~~~g~~~-v--~~  231 (299)
                      ...+|+|+|+|++|..+++.+...|. ++++++.+.-                     +.+.+   .++++.+. +  +.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            44679999999999999999999998 8888887531                     11111   13333211 1  11


Q ss_pred             -CCCHHHHHHhcCCccEEEEcCCCch
Q 022313          232 -SSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       232 -~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                       .-+.+.+.++-+++|+|++++.+..
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~Dn~~  128 (339)
T PRK07688        103 QDVTAEELEELVTGVDLIIDATDNFE  128 (339)
T ss_pred             ccCCHHHHHHHHcCCCEEEEcCCCHH
Confidence             1123445555678999999999876

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.037  Score=47.66  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++||.|+ |.+|...++.+...|++|++++++++..+.+.+++   +... +  .|..+.+.+.++       .+++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            357999988 99999999999899999999999977665543332   3221 1  233344333222       25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999874

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=96.01  E-value=0.055  Score=48.42  Aligned_cols=75  Identities=19%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhcCC--CEE--EeCCCHHHHHHhcCCccEEEEcC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLLGA--DKF--VVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~g~--~~v--~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ++++|||.|+ |.+|...++.+...|  .+|++++++......+.+.+..  -.+  .|..+.+.+.+.-.++|+||.++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            4688999987 999999988887765  5898888876654444333321  112  25556666665556799999988


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      +.
T Consensus        83 g~   84 (324)
T TIGR03589        83 AL   84 (324)
T ss_pred             cc
Confidence            74

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.01  E-value=0.054  Score=42.99  Aligned_cols=73  Identities=30%  Similarity=0.378  Sum_probs=49.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCC--chHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTS--TSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~--~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      ++++|.|+ +++|...++.+...|+ +|+++.++  .++.+.+.+++   +.. .++  |..+.+.++++       .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899997 8999999998888877 78888888  45444443333   321 122  33444443332       368


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999999984

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.00  E-value=0.084  Score=46.91  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -++++|.|+|-|.+|...++.++.+|.+|++..+.....+.+ +..|.. +.      .+.++....|+|+-++..+.  
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-~~~G~~-v~------sl~Eaak~ADVV~llLPd~~t~   85 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-KADGFE-VM------SVSEAVRTAQVVQMLLPDEQQA   85 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-HHcCCE-EC------CHHHHHhcCCEEEEeCCChHHH
Confidence            478999999999999999999999999999987764443444 455653 21      34456677899999887643  


Q ss_pred             -hH-HHHHHhcccCcEEEEEc
Q 022313          257 -PF-DAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 -~~-~~~~~~l~~~G~~v~~g  275 (299)
                       .+ ...+..|+++..++...
T Consensus        86 ~V~~~eil~~MK~GaiL~f~h  106 (335)
T PRK13403         86 HVYKAEVEENLREGQMLLFSH  106 (335)
T ss_pred             HHHHHHHHhcCCCCCEEEECC
Confidence             22 34667788887776663

>PLN02823 spermine synthase

Probab=95.99  E-value=0.13  Score=46.33  Aligned_cols=94  Identities=14%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCC---------EEEeCCCHHHHHHhcCCccEEE
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGAD---------KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~---------~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ..++|||+|+|. |..+..+++..+. +|+++..+++-.+.+++-++..         +++..+....+++..+.||+||
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            457899998863 4555667776554 8999999988888775555421         1222222344444457899997


Q ss_pred             EcCCCc------------hhHH-HHHHhcccCcEEEEE
Q 022313          250 DTASGD------------HPFD-AYMSLLKVAGVYVLV  274 (299)
Q Consensus       250 d~~g~~------------~~~~-~~~~~l~~~G~~v~~  274 (299)
                      --+..+            ..++ .+.+.|+++|.++.-
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            653221            2345 678899999998754

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.21  Score=43.86  Aligned_cols=99  Identities=18%  Similarity=0.139  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHH---HhcCCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEAL---SLLGADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~---~~~g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |.+|...++.+...|++|+++.++.+. .+.+.   +..+.+. +  .|..+.+.+.++       .+
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45788999998 899999999988899999999887532 22221   2223222 2  233344333322       25


Q ss_pred             CccEEEEcCCCch--------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGDH--------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|+++.++|...                          ..+.+++.+++.|+++.++..
T Consensus       124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence            7899999887410                          122334455667899988765

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.099  Score=44.68  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHHhc---CCCE-E--EeCCCHHHHH----Hh------
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALSLL---GADK-F--VVSSDLEQMK----AL------  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~----~~------  241 (299)
                      .+++++|.|+ +++|...++.+...|++|++.. +.+++.+...+++   +... .  .+..+.+.+.    ++      
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            4688999987 8999999999999999998875 4444444332222   3211 1  1222322211    11      


Q ss_pred             --c-CCccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          242 --G-KSLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 --~-~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        + +++|+++.++|..                         ...+.+++.++..|+++.++..
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~  146 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  146 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCc
Confidence              1 3799999998831                         0122355666777999998876

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.95  E-value=0.026  Score=55.60  Aligned_cols=76  Identities=18%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch---------------------HHHHHHHhcCCCEEEeCCC--H
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS---------------------KKEEALSLLGADKFVVSSD--L  235 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~---------------------~~~~~~~~~g~~~v~~~~~--~  235 (299)
                      ..+++|+|+|+|+.|+.++..+...|.+|+++.+.+.                     +.+.+ +++|.+...+..-  .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~-~~~Gv~~~~~~~v~~~  403 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIF-SAMGIEFELNCEVGKD  403 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHH-HHCCeEEECCCEeCCc
Confidence            3678999999999999999999999999999987543                     23334 5677654333211  0


Q ss_pred             HHHHHhcCCccEEEEcCCCc
Q 022313          236 EQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       236 ~~~~~~~~~~d~v~d~~g~~  255 (299)
                      -.+..+..+||.||.++|..
T Consensus       404 i~~~~~~~~~DavilAtGa~  423 (654)
T PRK12769        404 ISLESLLEDYDAVFVGVGTY  423 (654)
T ss_pred             CCHHHHHhcCCEEEEeCCCC
Confidence            01222335799999998853

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.93  E-value=0.067  Score=48.08  Aligned_cols=93  Identities=18%  Similarity=0.301  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      -.+++|+|+|+ |.+|..+++.+.. .+. +++++.++.++...+.++++...+.      .+.+.-...|+|+-+++.+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~------~l~~~l~~aDiVv~~ts~~  226 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL------SLEEALPEADIVVWVASMP  226 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH------hHHHHHccCCEEEECCcCC
Confidence            47789999998 8999988888864 454 8999999888888876666422221      2334446799999988875


Q ss_pred             hhHHHHHHhcccCcEEEEEcCC
Q 022313          256 HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       256 ~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .....-...+++.-.+++++.+
T Consensus       227 ~~~~I~~~~l~~~~~viDiAvP  248 (340)
T PRK14982        227 KGVEIDPETLKKPCLMIDGGYP  248 (340)
T ss_pred             cCCcCCHHHhCCCeEEEEecCC
Confidence            4322222456777888899988

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.91  E-value=0.086  Score=45.18  Aligned_cols=74  Identities=22%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      .+++++|.|+ |++|...++.+...|++|+++.+..+ ..+.+ ++.+...+ .|..+.+.+.++       .+++|+++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKEL-REKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH-HhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4688999988 99999999999989999988765543 33334 23333222 244454443332       25799999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            99874

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.91  E-value=0.11  Score=40.15  Aligned_cols=93  Identities=22%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHH-------------------HHH---HHhcC-CCEEEeCC---
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKK-------------------EEA---LSLLG-ADKFVVSS---  233 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~-------------------~~~---~~~~g-~~~v~~~~---  233 (299)
                      ..+|+|+|+|++|...+..+.+.|. ++++++...-+.                   +.+   .+++. ..++....   
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            4689999999999999999998998 788887542211                   111   12222 22222111   


Q ss_pred             CHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEE
Q 022313          234 DLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       234 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  273 (299)
                      +.+...++-+++|+|++|...........+..+..+.-+.
T Consensus        82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i  121 (135)
T PF00899_consen   82 DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFI  121 (135)
T ss_dssp             SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEE
T ss_pred             ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEE
Confidence            2233444446899999999987744455555666654443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.91  E-value=0.089  Score=45.39  Aligned_cols=75  Identities=17%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE---EEeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK---FVVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++++|.|+ +++|...+..+...|++|+++.+++++.+.+.+.+   +...   ..|..+.+.+.++       .+++
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5688999988 89999998888889999999999887766553333   3221   1244444443322       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999884

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.91  E-value=0.059  Score=42.78  Aligned_cols=89  Identities=22%  Similarity=0.239  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      ++++|.|+|-|.-|.+-++=++.+|.+|++..+...+....+++-|.+..       .+.+.....|+|+-.+....   
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-------~~~eAv~~aDvV~~L~PD~~q~~   75 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-------SVAEAVKKADVVMLLLPDEVQPE   75 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-------EHHHHHHC-SEEEE-S-HHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-------cHHHHHhhCCEEEEeCChHHHHH
Confidence            57899999999999999999999999999999988855444478786432       23344567899998887532   


Q ss_pred             hH-HHHHHhcccCcEEEEEc
Q 022313          257 PF-DAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 ~~-~~~~~~l~~~G~~v~~g  275 (299)
                      ++ +.....|+++-.+++..
T Consensus        76 vy~~~I~p~l~~G~~L~fah   95 (165)
T PF07991_consen   76 VYEEEIAPNLKPGATLVFAH   95 (165)
T ss_dssp             HHHHHHHHHS-TT-EEEESS
T ss_pred             HHHHHHHhhCCCCCEEEeCC
Confidence            23 55566888888777653

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.90  E-value=0.061  Score=44.68  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      +..+|+|+|+|++|...++.+.+.|. ++++++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            44779999999999999999999998 78888877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.88  E-value=0.085  Score=45.93  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+.+..++....--.|+++.|+|. ..+|.-...++...+++|++..+....+                     
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l---------------------  195 (278)
T PRK14172        137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNL---------------------  195 (278)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCH---------------------
Confidence            457776776766766544368999999997 7899999999999999998876443222                     


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+..|+++-++|.+..+.  -++++++..++++|..
T Consensus       196 ~~~~~~ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin  232 (278)
T PRK14172        196 KEVCKKADILVVAIGRPKFID--EEYVKEGAIVIDVGTS  232 (278)
T ss_pred             HHHHhhCCEEEEcCCCcCccC--HHHcCCCcEEEEeecc
Confidence            223356899999999887433  4569999999999866

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.091  Score=46.10  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc---------hHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST---------SKKEEALSLL---GADK-F--VVSSDLEQMKAL-  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~---------~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-  241 (299)
                      -+++++||.|+ +++|...++.+...|++|++++++.         ++.+.+.+++   +... .  .|..+.+.+.++ 
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            46789999988 8999999999988999999987764         4444433333   3221 1  234444333322 


Q ss_pred             ------cCCccEEEEcCCC
Q 022313          242 ------GKSLDFIIDTASG  254 (299)
Q Consensus       242 ------~~~~d~v~d~~g~  254 (299)
                            .+++|+++++.|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence                  2679999999884

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.88  E-value=0.046  Score=46.49  Aligned_cols=75  Identities=23%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-EEE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-KFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      .++++||.|+ |.+|...+..+...|++|++++++.++...+.++   .+.. .++  +..+.+.+.+.       .+.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999997 9999999999888899999999986655443222   2221 122  34444443332       2478


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |.++.+.+.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999998864

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.067  Score=45.55  Aligned_cols=73  Identities=23%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-----CCC-EE--EeCCCHHHHHH----h---cCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-----GAD-KF--VVSSDLEQMKA----L---GKS  244 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-----g~~-~v--~~~~~~~~~~~----~---~~~  244 (299)
                      +++++|.|+ |++|...++.+...|++|+++++++++.+.+.+.+     +.. ++  .|..+.+.+.+    +   .++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468999997 99999999888888999999999987766553322     111 12  24444443322    1   257


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      .|+++.+.|
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            999999987

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.86  E-value=0.096  Score=44.84  Aligned_cols=78  Identities=24%  Similarity=0.341  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH----------------------HHhcCCC-EEE--e-C
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA----------------------LSLLGAD-KFV--V-S  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~----------------------~~~~g~~-~v~--~-~  232 (299)
                      ++.+|+|+|+|++|..+++.+.+.|. ++++++.+.-+...+                      .++++.+ .+.  + .
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~  102 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK  102 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence            34779999999999999999999998 777776543222111                      1222211 111  1 1


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCchh
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -+.+.+.++-.++|+|+||+.+...
T Consensus       103 i~~~~~~~~~~~~DlVvd~~D~~~~  127 (240)
T TIGR02355       103 LDDAELAALIAEHDIVVDCTDNVEV  127 (240)
T ss_pred             CCHHHHHHHhhcCCEEEEcCCCHHH
Confidence            1223444555789999999998773

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.85  E-value=0.074  Score=43.14  Aligned_cols=92  Identities=17%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch------------------HHHHHH---HhcC-CCEEEe---CCCHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS------------------KKEEAL---SLLG-ADKFVV---SSDLE  236 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~------------------~~~~~~---~~~g-~~~v~~---~~~~~  236 (299)
                      +|+|+|+|++|...++.+.+.|. ++++++.+.-                  +.+.++   +++. ..++..   .-+.+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            48999999999999999999998 6888887641                  111111   2222 112211   11123


Q ss_pred             HHHHhcCCccEEEEcCCCchhHHHHHHh-cccCcEEEEE
Q 022313          237 QMKALGKSLDFIIDTASGDHPFDAYMSL-LKVAGVYVLV  274 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~-l~~~G~~v~~  274 (299)
                      ...++-+++|+|++|+.+........+. .+..+.-+..
T Consensus        81 ~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~  119 (174)
T cd01487          81 NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVC  119 (174)
T ss_pred             hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            3344457899999998887633334343 3332443333

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.84  E-value=0.066  Score=45.37  Aligned_cols=44  Identities=27%  Similarity=0.324  Sum_probs=37.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL  223 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~  223 (299)
                      ++++++|.|+ |++|...++.+...|++|+++++++++.+.+.++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~   49 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDA   49 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence            4678999998 9999999999998999999999998876655433

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.82  E-value=0.085  Score=47.00  Aligned_cols=74  Identities=27%  Similarity=0.357  Sum_probs=53.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCC--C--EE--EeCCCHHHHHHh-------cCCc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGA--D--KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~--~--~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++|.|+ +++|...++.+...| ++|++++++.++.+.+.+++..  .  ++  .|..+.+.+.++       .+++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            568999998 899999998888889 8999999998877766555531  1  12  244444433322       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        83 D~lI~nAG~   91 (314)
T TIGR01289        83 DALVCNAAV   91 (314)
T ss_pred             CEEEECCCc
Confidence            999998873

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.051  Score=46.74  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchH-HHHHHHhc---CC--CEEE--eCCCHHH----HHHh--c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSK-KEEALSLL---GA--DKFV--VSSDLEQ----MKAL--G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~-~~~~~~~~---g~--~~v~--~~~~~~~----~~~~--~  242 (299)
                      -.++++||.|+ |++|...++.+...| ++|++++|+++. .+.+.+++   +.  -+++  |..+.+.    ++++  .
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            56788999998 899999998877664 899999998775 55443333   32  1222  3333333    2222  1


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      ++.|+++.+.|.
T Consensus        86 g~id~li~~ag~   97 (253)
T PRK07904         86 GDVDVAIVAFGL   97 (253)
T ss_pred             CCCCEEEEeeec
Confidence            579999987764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.82  E-value=0.025  Score=45.02  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-----C-----CEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-----A-----DKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-----~-----~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      +|.|+|+|..|.+.+..+...|.+|.+..++++..+.+.+.-.     .     +.+....   .+++.-++.|+++-++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~---dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATT---DLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEES---SHHHHHTT-SEEEE-S
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccccc---CHHHHhCcccEEEecc
Confidence            5889999999999999999999999999999888777743221     1     1111122   2333447899999999


Q ss_pred             CCchhHHHHHHhccc---CcEEEEE
Q 022313          253 SGDHPFDAYMSLLKV---AGVYVLV  274 (299)
Q Consensus       253 g~~~~~~~~~~~l~~---~G~~v~~  274 (299)
                      .... .+..++.+++   .+..+..
T Consensus        78 Ps~~-~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   78 PSQA-HREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -GGG-HHHHHHHHTTTSHTT-EEEE
T ss_pred             cHHH-HHHHHHHHhhccCCCCEEEE
Confidence            9876 6777776666   3554444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.82  E-value=0.092  Score=45.50  Aligned_cols=74  Identities=16%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCC---hHHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCCCEE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGLG---GLGHMAVKFGKAFGLNVTVLSTST---SKKEEALSLLGADKF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~g---~~G~~a~~~a~~~g~~v~~~~~~~---~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  244 (299)
                      ++++++|.|++   ++|.+.++.+...|++|++..+++   +..+++.++.+....  .|-.+.+.+..+       .+.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            56889999873   799999999988999999888763   223333222332222  244444444332       256


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|++++++|
T Consensus        85 iD~linnAg   93 (262)
T PRK07984         85 FDGFVHSIG   93 (262)
T ss_pred             CCEEEECCc
Confidence            899999997

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.81  E-value=0.074  Score=52.06  Aligned_cols=92  Identities=13%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchhH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHPF  258 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~~  258 (299)
                      .++|+|.|.|.+|+..++.++..|.++++++.++++.+.+ ++.|...+. |..+.+.+++.+ ..+|.++-++++...-
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n  478 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS  478 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence            3679999999999999999999999999999999999988 577764443 555666666654 7899999999886522


Q ss_pred             HH---HHHhcccCcEEEE
Q 022313          259 DA---YMSLLKVAGVYVL  273 (299)
Q Consensus       259 ~~---~~~~l~~~G~~v~  273 (299)
                      ..   ..+.+.|+-+++.
T Consensus       479 ~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        479 LQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             HHHHHHHHHhCCCCeEEE
Confidence            22   2344445545443

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.81  E-value=0.086  Score=45.54  Aligned_cols=75  Identities=11%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHhcCCCEE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTS---KKEEALSLLGADKF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+   +++|.+.++.+...|++|++..+.+.   ..+++.++.+....  .|-.+.+.+.++       .++
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5678999984   58999999999999999998866532   23333233342222  244444443322       267


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|-
T Consensus        85 iD~lVnnAG~   94 (261)
T PRK08690         85 LDGLVHSIGF   94 (261)
T ss_pred             CcEEEECCcc
Confidence            9999999874

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.81  E-value=0.093  Score=45.79  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++....--.|+++.|+|. ..+|.-...++...++.|++.......++                   
T Consensus       137 ~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~-------------------  197 (284)
T PRK14177        137 TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP-------------------  197 (284)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------
Confidence            3456666666666665544468999999997 78999999999999999988764433222                   


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        +..+..|+++-++|.+..+  --++++++..++++|..
T Consensus       198 --~~~~~ADIvIsAvGk~~~i--~~~~ik~gavVIDvGin  233 (284)
T PRK14177        198 --SIVRQADIIVGAVGKPEFI--KADWISEGAVLLDAGYN  233 (284)
T ss_pred             --HHHhhCCEEEEeCCCcCcc--CHHHcCCCCEEEEecCc
Confidence              2336689999999988733  36789999999999975

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.81  E-value=0.078  Score=46.25  Aligned_cols=76  Identities=22%  Similarity=0.259  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CC--E----EEeCCCHHHHHH--------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---AD--K----FVVSSDLEQMKA--------  240 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~--~----v~~~~~~~~~~~--------  240 (299)
                      -+++++||.|+ .++|.+.+..+...|++|+++.+++++.++.++++.   ..  +    ..+..+.+..++        
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            46788999987 799999999999999999999999998776654432   21  1    112333322222        


Q ss_pred             hcCCccEEEEcCCC
Q 022313          241 LGKSLDFIIDTASG  254 (299)
Q Consensus       241 ~~~~~d~v~d~~g~  254 (299)
                      ..++.|+.+++.|.
T Consensus        86 ~~GkidiLvnnag~   99 (270)
T KOG0725|consen   86 FFGKIDILVNNAGA   99 (270)
T ss_pred             hCCCCCEEEEcCCc
Confidence            23679999998884

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.067  Score=45.89  Aligned_cols=76  Identities=25%  Similarity=0.243  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHH---hcCCCE---EEeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALS---LLGADK---FVVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~  243 (299)
                      -++++++|.|+ |++|...++.+...|++ |++++++++..+...+   +.+...   ..|..+.+.+.++       .+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35688999998 89999999999999998 9999988766553322   233221   2244444443332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.+.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.79  E-value=0.11  Score=44.86  Aligned_cols=93  Identities=20%  Similarity=0.285  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHH-HhcCCccEEEEc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMK-ALGKSLDFIIDT  251 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~-~~~~~~d~v~d~  251 (299)
                      .++.+||=+|+|. |..+..+++. +.+|++++.+++..+.+.+..   |..   .++. .+...+. ...+.||+|+..
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~-~d~~~l~~~~~~~fD~V~~~  119 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH-CAAQDIAQHLETPVDLILFH  119 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE-cCHHHHhhhcCCCCCEEEeh
Confidence            4567888888864 6777777775 789999999998877764433   321   2222 2222232 234689999853


Q ss_pred             CC-----C-chhHHHHHHhcccCcEEEEE
Q 022313          252 AS-----G-DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       252 ~g-----~-~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ..     . ...+..+.+.|+|+|+++.+
T Consensus       120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        120 AVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            22     2 23477889999999999765

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.79  E-value=0.28  Score=41.34  Aligned_cols=92  Identities=16%  Similarity=0.026  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCEEEeCC-CHHHHHHhcCCccEEEEcCCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADKFVVSS-DLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~-~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      -++.+|||+|+|.++.-=+..+...|++|+++...-. +.+.+ .+.|.-..+... ++..    -.++++||-+++.+.
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l-~~~~~i~~~~r~~~~~d----l~g~~LViaATdD~~   97 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDL-KKYGNLKLIKGNYDKEF----IKDKHLIVIATDDEK   97 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHH-HhCCCEEEEeCCCChHH----hCCCcEEEECCCCHH
Confidence            4678999999999999888888889999999976532 33333 233422222211 1122    267999999999888


Q ss_pred             hHHHHHHhcccCcEEEEEc
Q 022313          257 PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g  275 (299)
                      .-..+....+..+.++...
T Consensus        98 vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         98 LNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             HHHHHHHHHHHcCCeEEEc
Confidence            3333444444546555543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.79  E-value=0.058  Score=47.61  Aligned_cols=89  Identities=15%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE----E-EeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK----F-VVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~----v-~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      +|+|+|+|.+|...+..+...|.+|++++++++..+.+. +-|...    . ..........+. +.+|+||-++.... 
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~-   78 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-ENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ-   78 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-HcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence            589999999999888888888999999999877777763 435321    0 000000112223 78999999998765 


Q ss_pred             HHHHHHhcc----cCcEEEEE
Q 022313          258 FDAYMSLLK----VAGVYVLV  274 (299)
Q Consensus       258 ~~~~~~~l~----~~G~~v~~  274 (299)
                      ...+++.++    ++..++.+
T Consensus        79 ~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         79 LPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             HHHHHHHHhhhcCCCCEEEEe
Confidence            455555444    34456554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.79  E-value=0.077  Score=45.51  Aligned_cols=99  Identities=17%  Similarity=0.126  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-CCCEE-EeCCC-HHHHHH-hcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-GADKF-VVSSD-LEQMKA-LGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-g~~~v-~~~~~-~~~~~~-~~~~~d~v~d~~g  253 (299)
                      .++++|||+|+ |.+|...++.+...|++|+++.|++++........ +.+.+ .|..+ .+.+.+ +..++|+||.+.|
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g   94 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATG   94 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence            44678999998 99999999988888999999999877654432211 12222 23333 233333 3358999998877


Q ss_pred             Cch-------------hHHHHHHhcccC--cEEEEEcCC
Q 022313          254 GDH-------------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       254 ~~~-------------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                      ...             ....+++.+...  ++++.++..
T Consensus        95 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         95 FRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            421             123344444443  578887654

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.06  Score=46.85  Aligned_cols=75  Identities=21%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC---CEE--EeCCCHHHHH---Hh---cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA---DKF--VVSSDLEQMK---AL---GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~---~~v--~~~~~~~~~~---~~---~~~  244 (299)
                      +++++||.|+ |.+|...+..+...|++|++++++++..+...+.   .+.   -++  .|..+.+.+.   +.   .++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            3578999998 9999999999888999999999987766554322   221   112  2444444332   22   257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            8999999874

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.78  E-value=0.088  Score=45.34  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCc--hHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTST--SKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~--~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      .+++++|.|+   +++|.+.++.+...|++|++++++.  +..+.+.++++.. ..  .|..+.+.++++       .++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5678999985   6999999999888999999998764  3345554555421 11  244444443332       267


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++++.|.
T Consensus        86 iD~li~nAG~   95 (256)
T PRK07889         86 LDGVVHSIGF   95 (256)
T ss_pred             CcEEEEcccc
Confidence            9999998874

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.77  E-value=0.17  Score=44.31  Aligned_cols=92  Identities=20%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCC---------EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGAD---------KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~---------~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      ++|||+|.|- |-.+-.++++... +++++..+++-.+.+++-++..         .++..+..+.+++...+||+|+--
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            6999997653 4445566666644 8999999888888886666622         222233334555555689999754


Q ss_pred             CCC----------chhHHHHHHhcccCcEEEEE
Q 022313          252 ASG----------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       252 ~g~----------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +..          ...++.+.++|+++|.++.-
T Consensus       157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            443          34688899999999999877

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.77  E-value=0.06  Score=45.83  Aligned_cols=75  Identities=24%  Similarity=0.230  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCC-EE--EeCCCHHHHHH-------hcCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGAD-KF--VVSSDLEQMKA-------LGKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~-~v--~~~~~~~~~~~-------~~~~~d~  247 (299)
                      +++++||.|+ |++|...+..+...|++|++++++.. +.....++.+.. .+  .|..+.+.+..       ..+++|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   83 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDI   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999998 89999999999999999999998652 222222344422 12  23444443322       1257999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        84 li~~ag~   90 (248)
T TIGR01832        84 LVNNAGI   90 (248)
T ss_pred             EEECCCC
Confidence            9998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.77  E-value=0.068  Score=46.15  Aligned_cols=75  Identities=21%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHhcCCCEE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTS---TSKKEEALSLLGADKF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~---~~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+   +++|++.++.+...|++|+++.+.   +++.+.+.++++....  .|-.+.+.+.++       .++
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            5688999984   589999999888899999887543   3444444445553222  244444443322       267


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++++.|.
T Consensus        85 iD~lvnnAG~   94 (260)
T PRK06997         85 LDGLVHSIGF   94 (260)
T ss_pred             CcEEEEcccc
Confidence            9999998863

>PRK06046 alanine dehydrogenase; Validated

Probab=95.76  E-value=0.059  Score=48.37  Aligned_cols=101  Identities=21%  Similarity=0.329  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhcC----CCEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLLG----ADKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      +...++.|+|+|..|...+..+.. .+. ++.+.++++++.+.+.+++.    ..... ..+.   ++... .|+|+.|+
T Consensus       127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~-~~~~---~~~l~-aDiVv~aT  201 (326)
T PRK06046        127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTV-AEDI---EEACD-CDILVTTT  201 (326)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEE-eCCH---HHHhh-CCEEEEec
Confidence            556789999999999888876663 455 78888999888877766553    22111 2222   22224 89999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCC--CceeeChh
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPA  285 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~  285 (299)
                      .....+ -..+.++++-.+..+|..  ....++..
T Consensus       202 ps~~P~-~~~~~l~~g~hV~~iGs~~p~~~El~~~  235 (326)
T PRK06046        202 PSRKPV-VKAEWIKEGTHINAIGADAPGKQELDPE  235 (326)
T ss_pred             CCCCcE-ecHHHcCCCCEEEecCCCCCccccCCHH
Confidence            875422 234567898888899976  44555544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.75  E-value=0.19  Score=44.79  Aligned_cols=105  Identities=21%  Similarity=0.156  Sum_probs=69.1

Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEE
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      ... ...++++|+|+|..|...+..+.. .+. +|.+..|++++.+.+.+++...  .+....+   ..+...+.|+|+.
T Consensus       120 La~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~---~~~av~~aDIVi~  195 (314)
T PRK06141        120 LAR-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTD---LEAAVRQADIISC  195 (314)
T ss_pred             hCC-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCC---HHHHHhcCCEEEE
Confidence            444 567899999999999998865443 454 8999999999888876665321  1222222   2233367999999


Q ss_pred             cCCCchhHHHHHHhcccCcEEEEEcCC--CceeeCh
Q 022313          251 TASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSP  284 (299)
Q Consensus       251 ~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~  284 (299)
                      +++....+- -.+.++++-.+..+|..  ....++.
T Consensus       196 aT~s~~pvl-~~~~l~~g~~i~~ig~~~~~~~El~~  230 (314)
T PRK06141        196 ATLSTEPLV-RGEWLKPGTHLDLVGNFTPDMRECDD  230 (314)
T ss_pred             eeCCCCCEe-cHHHcCCCCEEEeeCCCCcccccCCH
Confidence            888753211 12567888877777766  3444444

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.74  E-value=0.056  Score=46.42  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      -.++++||.|+ |++|...++.+...|++|+++.++ ++.+.+.   ++.+.. .+  .|..+.+.+.++       .++
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999998 899999999999999999999887 3333332   233422 12  234444433322       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        92 id~li~~ag~  101 (258)
T PRK06935         92 IDILVNNAGT  101 (258)
T ss_pred             CCEEEECCCC
Confidence            8999998873

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.061  Score=46.51  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      .+++++|.|+ |++|...++.+...|++|++++++.++.+..   -+... ..|..+.+.+.++       .+++|+++.
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI---PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc---CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3568999988 9999999999888999999999986554322   12222 2244455444332       257899999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        80 ~ag~   83 (270)
T PRK06179         80 NAGV   83 (270)
T ss_pred             CCCC
Confidence            9984

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.73  E-value=0.047  Score=42.86  Aligned_cols=90  Identities=18%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC-------CC-HHHHHHhcCCccEEEEcCCCc
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS-------SD-LEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~-------~~-~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      |+|+|+|++|.+.+..++..|.+|.++.+.+ +.+.+ ++.|..-....       .. ........+.+|+||-|+-..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc
Confidence            6889999999998888888999999999988 66665 45452111111       00 000112347899999999875


Q ss_pred             h---hHHHHHHhcccCcEEEEEc
Q 022313          256 H---PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       256 ~---~~~~~~~~l~~~G~~v~~g  275 (299)
                      .   .++.+.+.+.++..++.+-
T Consensus        79 ~~~~~l~~l~~~~~~~t~iv~~q  101 (151)
T PF02558_consen   79 QLEQALQSLKPYLDPNTTIVSLQ  101 (151)
T ss_dssp             GHHHHHHHHCTGEETTEEEEEES
T ss_pred             chHHHHHHHhhccCCCcEEEEEe
Confidence            5   2333444555556666663

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.27  Score=41.58  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHH---HhcCCC-EEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEAL---SLLGAD-KFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~---~~~g~~-~v~--~~~~~~~~~~~-------~~  243 (299)
                      .++++++|.|+ |++|...++.+...|++++++.++... .+.+.   ++.+.. .++  +..+.+.+.+.       .+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35688999987 999999999999999998887765432 22222   223321 122  33344333222       25


Q ss_pred             CccEEEEcCCCch-------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGDH-------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|+++.+.|...                         ..+.+++.++.+|+++.++..
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTS  141 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence            7999999888410                         123344555677899988755

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.73  E-value=0.089  Score=47.59  Aligned_cols=76  Identities=20%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--CC-CEEE--eCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL--GA-DKFV--VSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~--g~-~~v~--~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ..+.+|||.|+ |.+|...++.+...|.+|++++++.+..+.+.+.+  +. -.++  +..+.+.+.++-.++|+||.++
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            57789999997 99999999999989999999988766554443332  11 1122  3344555555556789999988


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      +.
T Consensus        88 ~~   89 (353)
T PLN02896         88 AS   89 (353)
T ss_pred             cc
Confidence            74

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.73  E-value=0.3  Score=40.24  Aligned_cols=100  Identities=19%  Similarity=0.168  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHH---hcCCC--EEEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALS---LLGAD--KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++++||=+|+|. |..++.+++.. +.+|++++.+++..+.+.+   +++.+  .++..+..+.+..+...+|.++-
T Consensus        37 ~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~  115 (196)
T PRK07402         37 RLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI  115 (196)
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence            347888888888753 44555556544 4699999999887776643   34533  23333333333334334455443


Q ss_pred             cCCC--chhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASG--DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~--~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..+.  ...++.+.+.|+++|+++.....
T Consensus       116 ~~~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        116 EGGRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             ECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            3332  24578888999999999887544

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.73  E-value=0.14  Score=44.93  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHh-cCCccEEEEcC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKAL-GKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~-~~~~d~v~d~~  252 (299)
                      ++++++||=+|+|+ |.+++..++ +|+ +|+.++-++...+.+++..   +.+......-....... .+.||+|+-++
T Consensus       160 ~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI  237 (300)
T COG2264         160 LKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI  237 (300)
T ss_pred             hcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence            46899998889864 667776666 476 7999999887766654322   22210000000011112 26899999877


Q ss_pred             CCch---hHHHHHHhcccCcEEEEEcCC
Q 022313          253 SGDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      =...   ......+.++++|++++.|-.
T Consensus       238 LA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         238 LAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             hHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            4432   355667899999999999977

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.73  E-value=0.082  Score=47.53  Aligned_cols=85  Identities=20%  Similarity=0.248  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|.+|.|+|.|.+|...++.++..|.+|++.+++++...... +        .  ...+.++....|+|+.++....   
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~-~--------~--~~~l~ell~~aDiVil~lP~t~~t~  213 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFL-T--------Y--KDSVKEAIKDADIISLHVPANKESY  213 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhh-h--------c--cCCHHHHHhcCCEEEEeCCCcHHHH
Confidence            667899999999999999999999999999998865432110 0        0  0112333455677776666432   


Q ss_pred             --hHHHHHHhcccCcEEEEEc
Q 022313          257 --PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g  275 (299)
                        .....+..++++..++.++
T Consensus       214 ~li~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        214 HLFDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             HHHhHHHHhcCCCCcEEEEcC
Confidence              1233445666666666554

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.73  E-value=0.05  Score=48.53  Aligned_cols=76  Identities=22%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---CEEE--eCCCHHHHHHhcCCccEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---DKFV--VSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~v~--~~~~~~~~~~~~~~~d~v~  249 (299)
                      ..++++||.|+ |.+|...+..+...|++|++++++.+..+...+..   +.   -+++  |..+.+.+.++-.++|+|+
T Consensus         3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            35789999997 99999999999989999998887765443321111   11   1222  3444555555556799999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+++.
T Consensus        83 h~A~~   87 (325)
T PLN02989         83 HTASP   87 (325)
T ss_pred             EeCCC
Confidence            99873

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.72  E-value=0.1  Score=49.40  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      ..+++++|+|+|++|.+++..+...|++++++.++.++.+.+.++++.. .+...   ...+ ...+|+|++|+....
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~-~~~~~---~~~~-l~~~DiVInatP~g~  402 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGK-AFPLE---SLPE-LHRIDIIINCLPPSV  402 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccc-eechh---Hhcc-cCCCCEEEEcCCCCC
Confidence            4678899999999999999999999999999999888877775555432 12111   1111 257899999887543

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.72  E-value=0.075  Score=45.57  Aligned_cols=75  Identities=20%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      .++++||.|+ +++|...+..+...|+++++++++.+..+.+.++   .+.+ ++  .|..+.+.+.++       .+++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999988 8999999999989999999999887776554332   2322 12  244444443322       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.+.|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.71  E-value=0.12  Score=45.09  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=71.2

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++....--.|+++.|+|. ..+|.-.+.++...+++|++.......                     +
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~---------------------l  195 (284)
T PRK14190        137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKN---------------------L  195 (284)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchh---------------------H
Confidence            467777777777766654468999999997 789999999999999999887543222                     2


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+..|+|+-++|.+..  ---+.++++..++++|..
T Consensus       196 ~~~~~~ADIvI~AvG~p~~--i~~~~ik~gavVIDvGi~  232 (284)
T PRK14190        196 AELTKQADILIVAVGKPKL--ITADMVKEGAVVIDVGVN  232 (284)
T ss_pred             HHHHHhCCEEEEecCCCCc--CCHHHcCCCCEEEEeecc
Confidence            2334668899999988763  234678999999999876

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.70  E-value=0.11  Score=45.42  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+.+..++....--.|++++|+|. ..+|.=.+.++...+++|++..+....+.                   
T Consensus       136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~-------------------  196 (282)
T PRK14180        136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------  196 (282)
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHH-------------------
Confidence            3567777777777766554468999999997 68999999999999999988765432222                   


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        +..+..|+++-++|.+..+.  -++++++..++++|..
T Consensus       197 --~~~k~ADIvIsAvGkp~~i~--~~~vk~gavVIDvGin  232 (282)
T PRK14180        197 --SHTTKADILIVAVGKPNFIT--ADMVKEGAVVIDVGIN  232 (282)
T ss_pred             --HHhhhcCEEEEccCCcCcCC--HHHcCCCcEEEEeccc
Confidence              22366899999999887433  4789999999999875

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.68  E-value=0.072  Score=47.44  Aligned_cols=110  Identities=23%  Similarity=0.213  Sum_probs=75.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC----CCE----EEeCCCHHHHHHh-------c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG----ADK----FVVSSDLEQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g----~~~----v~~~~~~~~~~~~-------~  242 (299)
                      -++.+++|.|+ +++|..++..+...|++|++..|+.++.+++++++.    ...    -+|-.+.+.++.+       .
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~  112 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKE  112 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcC
Confidence            45678889998 899999999999999999999999887777655543    222    2344455555443       3


Q ss_pred             CCccEEEEcCCCc-----------------------hhHHHHHHhcccC--cEEEEEcCC-CceeeChhhhh
Q 022313          243 KSLDFIIDTASGD-----------------------HPFDAYMSLLKVA--GVYVLVGFP-SKVKFSPASLN  288 (299)
Q Consensus       243 ~~~d~v~d~~g~~-----------------------~~~~~~~~~l~~~--G~~v~~g~~-~~~~~~~~~l~  288 (299)
                      .+.|+.++++|--                       ...+.++..|+..  +|+|.+... ....+++..+.
T Consensus       113 ~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~  184 (314)
T KOG1208|consen  113 GPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLS  184 (314)
T ss_pred             CCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhcc
Confidence            6789999988820                       1244555666655  799998776 32333444443

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.67  E-value=0.033  Score=42.20  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCC-eEEEE-eCCchHHHHHHHhcC----CCE-EEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGL-NVTVL-STSTSKKEEALSLLG----ADK-FVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~-~~~~~~~~~~~~~~g----~~~-v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      +|.|+|+ |.+|...++++...-. +++.+ .++.+.-..+...++    ... .+...+.+.   + ...|+||.|++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~Dvvf~a~~~   76 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE---L-SDVDVVFLALPH   76 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH---H-TTESEEEE-SCH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH---h-hcCCEEEecCch
Confidence            5889997 9999999999997543 54444 444412222212222    222 222212222   2 789999999998


Q ss_pred             chhHHHHHHhcccCcEEEEEcCC
Q 022313          255 DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 ~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....+..-..++.+-++++....
T Consensus        77 ~~~~~~~~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   77 GASKELAPKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             HHHHHHHHHHHHTTSEEEESSST
T ss_pred             hHHHHHHHHHhhCCcEEEeCCHH
Confidence            77455555666777788888655

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.66  E-value=0.081  Score=46.79  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-------EEEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-------KFVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-------~v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      +|+|+|+|.+|...+..+...|.+|+++++ +++.+.+ ++.|..       ..+.........+....+|++|-++...
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL-RERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHH-HhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            589999999999888888888999999999 6677666 344421       1111000111223347899999998876


Q ss_pred             hhHHHHHHhc----ccCcEEEEE
Q 022313          256 HPFDAYMSLL----KVAGVYVLV  274 (299)
Q Consensus       256 ~~~~~~~~~l----~~~G~~v~~  274 (299)
                      . .+.+++.+    .++..++.+
T Consensus        80 ~-~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         80 Q-LDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             C-HHHHHHHHHhhcCCCCEEEEe
Confidence            5 45544444    444555544

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.66  E-value=0.11  Score=43.05  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .++.+||-+|+|. |..+..+++. |.+|++++.+++-.+.+.+.   .+...+ +...+.... ...+.||+|+....-
T Consensus        29 ~~~~~vLDiGcG~-G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~~  105 (197)
T PRK11207         29 VKPGKTLDLGCGN-GRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEYDFILSTVVL  105 (197)
T ss_pred             CCCCcEEEECCCC-CHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCcCEEEEecch
Confidence            5668899999875 7777778775 78999999998766655322   222211 011111111 123579999875431


Q ss_pred             --------chhHHHHHHhcccCcEEEEE
Q 022313          255 --------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       255 --------~~~~~~~~~~l~~~G~~v~~  274 (299)
                              ...+..+.+.|+++|.++.+
T Consensus       106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        106 MFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                    13467788899999996554

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.65  E-value=0.25  Score=41.67  Aligned_cols=75  Identities=27%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHh---cCCCE-EE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEALSL---LGADK-FV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~~~---~g~~~-v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |.+|...+..+...|++|+++.++... .+...+.   .+... ++  +..+.+.+.++       ..+
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4578999998 999999999999999999887776543 2222222   23221 22  44444433322       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|.++.+.|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            8999998874

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.63  E-value=0.31  Score=37.35  Aligned_cols=90  Identities=18%  Similarity=0.330  Sum_probs=61.2

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCC--CeEEEEe--CCchHHHHHHHhcCCCEEEeCCCH--HHHH-----------------
Q 022313          184 LGVIGL-GGLGHMAVKFGKAFG--LNVTVLS--TSTSKKEEALSLLGADKFVVSSDL--EQMK-----------------  239 (299)
Q Consensus       184 vlI~G~-g~~G~~a~~~a~~~g--~~v~~~~--~~~~~~~~~~~~~g~~~v~~~~~~--~~~~-----------------  239 (299)
                      |.|+|+ |++|..+..+.+...  .+|+...  ++-+.+.+..++|....+...++.  +.++                 
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~   80 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE   80 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence            578899 999999999999887  4776665  444455555578888777655542  1121                 


Q ss_pred             ---Hh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEE
Q 022313          240 ---AL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       240 ---~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  273 (299)
                         ++  ..++|+|+.++-+...+.-.+.+++.+-++.+
T Consensus        81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence               11  15799999999988878888888887766543

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=95.62  E-value=0.065  Score=48.42  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC----CC-EEEeCCCHHHHHHhc--CCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG----AD-KFVVSSDLEQMKALG--KSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g----~~-~v~~~~~~~~~~~~~--~~~d~v~d~  251 (299)
                      ++++|||.|+ |.+|...++.+...|.+|+++++.........+.++    .. ...+..+.+.+.++-  .++|+|+.+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~   82 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL   82 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence            4688999997 999999999999999999999887664433212222    11 122444555555442  257999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      ++.
T Consensus        83 A~~   85 (349)
T TIGR02622        83 AAQ   85 (349)
T ss_pred             Ccc
Confidence            873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.62  E-value=0.07  Score=47.76  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL  223 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~  223 (299)
                      .|++++|.|+ +++|...++.+...|++|++++|++++.+.+.++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~   96 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS   96 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence            5789999998 8999999998888899999999999887765443

>PRK14967 putative methyltransferase; Provisional

Probab=95.61  E-value=0.26  Score=41.52  Aligned_cols=94  Identities=24%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHH---hcCCC-EEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALS---LLGAD-KFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ++++++||-.|+|. |..+..+++. +. +++.++.+++..+.+.+   ..+.. .+++.+-.+..  ..+.||+|+.+.
T Consensus        34 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--~~~~fD~Vi~np  109 (223)
T PRK14967         34 LGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--EFRPFDVVVSNP  109 (223)
T ss_pred             cCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc--cCCCeeEEEECC
Confidence            37889999999987 8888888775 55 99999999887765533   23332 22222211111  135799999753


Q ss_pred             CCc---------------------------hhHHHHHHhcccCcEEEEEc
Q 022313          253 SGD---------------------------HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       253 g~~---------------------------~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-.                           ..+..+.+.|+++|+++.+-
T Consensus       110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            210                           12456778999999998763

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.61  E-value=0.098  Score=50.58  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=67.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchh--
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHP--  257 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~--  257 (299)
                      +.++|.|.|.+|+..++.++..|.++++++.++++.+++ ++.|...+. |..+++.+++.. +.+|.++-++++...  
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~  496 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG  496 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence            678999999999999999999999999999999999888 567755444 445566666665 789988877776431  


Q ss_pred             -HHHHHHhcccCcEEEEE
Q 022313          258 -FDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       258 -~~~~~~~l~~~G~~v~~  274 (299)
                       .-...+...+.-+++..
T Consensus       497 ~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        497 EIVASAREKRPDIEIIAR  514 (558)
T ss_pred             HHHHHHHHHCCCCeEEEE
Confidence             22233445555566544

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.61  E-value=0.19  Score=42.27  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHH---hcCCCE---EEe-CCCHHHHHH-hcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALS---LLGADK---FVV-SSDLEQMKA-LGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~---v~~-~~~~~~~~~-~~~~~d~v  248 (299)
                      ++.+++|=+|.+ +|+.++.+|..+.  .+++.++++++..+.+++   +.|.++   ++. .+..+.+.. ..+.||+|
T Consensus        58 ~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          58 SGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             cCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            677888888864 4777888888775  489999999998777643   446444   222 133444554 35889999


Q ss_pred             EEcCCC---chhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASG---DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~---~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |--..-   +..++.+++.|+++|.++.=-..
T Consensus       137 FIDadK~~yp~~le~~~~lLr~GGliv~DNvl  168 (219)
T COG4122         137 FIDADKADYPEYLERALPLLRPGGLIVADNVL  168 (219)
T ss_pred             EEeCChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence            865553   33689999999999998754333

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.60  E-value=0.11  Score=46.53  Aligned_cols=94  Identities=14%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC----CeEEEEeCC-c-hHHHHHHHhcCC----------------------CEEEeCCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG----LNVTVLSTS-T-SKKEEALSLLGA----------------------DKFVVSSD  234 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g----~~v~~~~~~-~-~~~~~~~~~~g~----------------------~~v~~~~~  234 (299)
                      +|.|.|.|.+|....+.+...+    ..|..+..- + +....+ -++..                      -.++..++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayl-l~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHL-LRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHH-HhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            4789999999999999988653    466655432 2 222233 12221                      01223334


Q ss_pred             HHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       235 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++.+.+-..++|+||+|+|.....+.+...++.|++.+.+..+
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            4444444468999999999987778888999999999999877

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.59  E-value=0.086  Score=47.65  Aligned_cols=86  Identities=13%  Similarity=0.114  Sum_probs=55.7

Q ss_pred             HHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHH----HHHHhcC------CCEE-EeCCC
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKE----EALSLLG------ADKF-VVSSD  234 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~----~~~~~~g------~~~v-~~~~~  234 (299)
                      |+|.-++.... -+.++|||.|+ |-+|...+..+...|.+|+++++......    .+....+      ...+ .|..+
T Consensus         2 ~~~~~~~~~~~-~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (348)
T PRK15181          2 TAYEELRTKLV-LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK   80 (348)
T ss_pred             chhhhhhhccc-ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence            45665544444 45578999998 99999999999999999999987543221    1111111      1111 13444


Q ss_pred             HHHHHHhcCCccEEEEcCC
Q 022313          235 LEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       235 ~~~~~~~~~~~d~v~d~~g  253 (299)
                      .+.+..+-.++|+||.+++
T Consensus        81 ~~~l~~~~~~~d~ViHlAa   99 (348)
T PRK15181         81 FTDCQKACKNVDYVLHQAA   99 (348)
T ss_pred             HHHHHHHhhCCCEEEECcc
Confidence            5555555567999999886

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.58  E-value=0.12  Score=44.32  Aligned_cols=90  Identities=21%  Similarity=0.255  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH----------------------HHhcCC-CEEEeCC--
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA----------------------LSLLGA-DKFVVSS--  233 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~----------------------~~~~g~-~~v~~~~--  233 (299)
                      ...+|+|+|+|++|..++..+.+.|. ++++++.+.-+...+                      .+++.. -.+....  
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~  110 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR  110 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence            45789999999999999999999998 777776542221111                      122221 1111111  


Q ss_pred             -CHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCc
Q 022313          234 -DLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAG  269 (299)
Q Consensus       234 -~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  269 (299)
                       +.+...++-+++|+|++|+..........+.....+
T Consensus       111 i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~  147 (245)
T PRK05690        111 LDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK  147 (245)
T ss_pred             CCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC
Confidence             223344455789999999998763333333333333

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=95.58  E-value=0.17  Score=46.14  Aligned_cols=92  Identities=16%  Similarity=0.269  Sum_probs=66.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHC--CCeEEEEe--CCchHHHHHHHhcCCCEEEeCCCH--HHHHH--------------
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAF--GLNVTVLS--TSTSKKEEALSLLGADKFVVSSDL--EQMKA--------------  240 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~--g~~v~~~~--~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~--------------  240 (299)
                      ++|.|+|+ |++|..++...+..  ..+|++++  ++.+++.+..++|+...+...++.  ..+++              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            57899997 99999999998865  45777775  556677777788998776654432  11221              


Q ss_pred             ----h-c-CCccEEEEcCCCchhHHHHHHhcccCcEEEE
Q 022313          241 ----L-G-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       241 ----~-~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  273 (299)
                          + . ..+|+|+.++.|...+.-.+.+++.|-++.+
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence                1 1 3689999999987667888888888776655

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.57  E-value=0.11  Score=42.73  Aligned_cols=114  Identities=12%  Similarity=0.062  Sum_probs=75.9

Q ss_pred             ccchhhHHHHHHhhhccC---------CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-CE
Q 022313          160 PLLCAGITVYTPMMRHKM---------NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-DK  228 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~---------~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-~~  228 (299)
                      .+||...+....|+....         --.|++++|+|. ..+|.=.+.++...+++|++...+.-..  . .+-+. .+
T Consensus        32 ~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~-~~~~~~~h  108 (197)
T cd01079          32 ILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--F-TRGESIRH  108 (197)
T ss_pred             ccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--c-cccccccc
Confidence            456666666666665432         268999999997 6899999999999999999885432111  1 01010 00


Q ss_pred             EEe-CCC-HHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          229 FVV-SSD-LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       229 v~~-~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      --- ..+ ...+.+..+..|+|+-++|.+. +.---+.++++..++++|..
T Consensus       109 s~t~~~~~~~~l~~~~~~ADIVIsAvG~~~-~~i~~d~ik~GavVIDVGi~  158 (197)
T cd01079         109 EKHHVTDEEAMTLDCLSQSDVVITGVPSPN-YKVPTELLKDGAICINFASI  158 (197)
T ss_pred             ccccccchhhHHHHHhhhCCEEEEccCCCC-CccCHHHcCCCcEEEEcCCC
Confidence            000 011 2235566688999999999987 42346789999999999976

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK06398 aldose dehydrogenase; Validated

Probab=95.57  E-value=0.053  Score=46.73  Aligned_cols=70  Identities=23%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-------cCCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~v~d~  251 (299)
                      +++++||.|+ +++|...+..+...|++|+++++++.+....     .....|..+.+.+.++       .+++|+++.+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~-----~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~   79 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDV-----DYFKVDVSNKEQVIKGIDYVISKYGRIDILVNN   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCce-----EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4689999998 8999999999999999999999875432211     0111244444443332       2579999998


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      .|.
T Consensus        80 Ag~   82 (258)
T PRK06398         80 AGI   82 (258)
T ss_pred             CCC
Confidence            873

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.57  E-value=0.12  Score=45.33  Aligned_cols=89  Identities=24%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh---HH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP---FD  259 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~---~~  259 (299)
                      +|.|+|.|.+|...+..++..|.+|++++++++..+.+ .+.|...... .+.    +.....|+||.|+.....   +.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a-~~~g~~~~~~-~~~----~~~~~aDlVilavp~~~~~~~~~   75 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA-IERGLVDEAS-TDL----SLLKDCDLVILALPIGLLLPPSE   75 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCccccc-CCH----hHhcCCCEEEEcCCHHHHHHHHH
Confidence            58899999999988888888899999999998888877 3555311111 111    123678999999886542   23


Q ss_pred             HHHHhcccCcEEEEEcCC
Q 022313          260 AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       260 ~~~~~l~~~G~~v~~g~~  277 (299)
                      .....++++..+.+++..
T Consensus        76 ~l~~~l~~~~ii~d~~Sv   93 (279)
T PRK07417         76 QLIPALPPEAIVTDVGSV   93 (279)
T ss_pred             HHHHhCCCCcEEEeCcch
Confidence            333445556566666644

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.56  E-value=0.34  Score=36.19  Aligned_cols=90  Identities=22%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHC--CCeEE-EEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF--GLNVT-VLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD  259 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~--g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  259 (299)
                      ++.|+|.|.+|......++..  +.++. ++++++++.+.+.+++|.. .+  .+.+.+.+. ..+|+|+-++.......
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~--~~~~~ll~~-~~~D~V~I~tp~~~h~~   77 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VY--TDLEELLAD-EDVDAVIIATPPSSHAE   77 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EE--SSHHHHHHH-TTESEEEEESSGGGHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-ch--hHHHHHHHh-hcCCEEEEecCCcchHH
Confidence            578999999998888777766  34655 4566666777777788876 32  222222111 47999999999877566


Q ss_pred             HHHHhcccCcEEEEEcCC
Q 022313          260 AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       260 ~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+++.+- -+.+..+
T Consensus        78 ~~~~~l~~g~-~v~~EKP   94 (120)
T PF01408_consen   78 IAKKALEAGK-HVLVEKP   94 (120)
T ss_dssp             HHHHHHHTTS-EEEEESS
T ss_pred             HHHHHHHcCC-EEEEEcC
Confidence            6666666555 5566555

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.56  E-value=0.11  Score=46.43  Aligned_cols=87  Identities=21%  Similarity=0.188  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -++++|.|+|.|.+|.+.++-++..|.+|++..+...+.....++.|....       ...++....|+|+-++.... .
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-------s~~eaa~~ADVVvLaVPd~~-~   86 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-------TVAEAAKWADVIMILLPDEV-Q   86 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-------CHHHHHhcCCEEEEcCCHHH-H
Confidence            457889999999999999999999999998877775555444456675321       22344567899999998754 3


Q ss_pred             HH-----HHHhcccCcEEEE
Q 022313          259 DA-----YMSLLKVAGVYVL  273 (299)
Q Consensus       259 ~~-----~~~~l~~~G~~v~  273 (299)
                      ..     ....++++..++.
T Consensus        87 ~~V~~~~I~~~Lk~g~iL~~  106 (330)
T PRK05479         87 AEVYEEEIEPNLKEGAALAF  106 (330)
T ss_pred             HHHHHHHHHhcCCCCCEEEE
Confidence            33     3345566555533

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.56  E-value=0.26  Score=40.28  Aligned_cols=99  Identities=20%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHH---HHH-h-cCCcc
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQ---MKA-L-GKSLD  246 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~---~~~-~-~~~~d  246 (299)
                      ....++++++||.+|+|.-+.......+..+ .+|++++.++..     ...+.+.+ .+..+...   +.+ . .+++|
T Consensus        26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            3445689999999999765544333333323 489999988753     11233322 13322222   222 2 35799


Q ss_pred             EEEEcC-----CC------------chhHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTA-----SG------------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~-----g~------------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+...     |.            ...+..+.+.|+++|+++.....
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            999532     21            23467788999999999986543

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.55  E-value=0.15  Score=52.38  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHC-CCe-------------EEEEeCCchHHHHHHHhc-CCC-EEEeCCCHHHHHHhcC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAF-GLN-------------VTVLSTSTSKKEEALSLL-GAD-KFVVSSDLEQMKALGK  243 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~-g~~-------------v~~~~~~~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~~~  243 (299)
                      ..++|+|+|+|.+|...+..+... ++.             |++.+.+.++.+++.+.+ +.+ ..++..+.+.+.++-.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467899999999999988888754 334             777888877777776666 432 2344566666666545


Q ss_pred             CccEEEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ++|+|+.++.......-+..|++.+-.+++.
T Consensus       648 ~~DaVIsalP~~~H~~VAkaAieaGkHvv~e  678 (1042)
T PLN02819        648 QVDVVISLLPASCHAVVAKACIELKKHLVTA  678 (1042)
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCCCEEEC
Confidence            6999999999765455555566555444433

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.55  E-value=0.11  Score=48.74  Aligned_cols=89  Identities=24%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             EEEEEc-CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---hH
Q 022313          183 SLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---PF  258 (299)
Q Consensus       183 ~vlI~G-~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~  258 (299)
                      +|.|+| .|.+|...+..++..|.+|++++++++......+++|.. .  ..+   ..+.....|+|+-++....   .+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~-~--~~~---~~e~~~~aDvVIlavp~~~~~~vl   75 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVE-Y--AND---NIDAAKDADIVIISVPINVTEDVI   75 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCe-e--ccC---HHHHhccCCEEEEecCHHHHHHHH
Confidence            588897 599999999999999999999999887765554667752 1  111   1122356788888877543   12


Q ss_pred             HHHHHhcccCcEEEEEcCC
Q 022313          259 DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~  277 (299)
                      ......++++..+++++..
T Consensus        76 ~~l~~~l~~~~iViDvsSv   94 (437)
T PRK08655         76 KEVAPHVKEGSLLMDVTSV   94 (437)
T ss_pred             HHHHhhCCCCCEEEEcccc
Confidence            3333445666677777653

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.54  E-value=0.21  Score=42.01  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      -.+.+|+|.|.|.+|..+++++...|++++.+..++.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4789999999999999999999999996666554444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.54  E-value=0.1  Score=44.34  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC-CEEE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA-DKFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |.+|...++.+...|++|++++++.+..+.+.+.   .+. -.++  |..+.+.+.++       .++.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999998 9999999999999999999999987766554322   222 1222  33344433322       2578


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |++|.+.|
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99999997

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.54  E-value=0.092  Score=44.74  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC--EEE--eCC--CHHHHHH-------h
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD--KFV--VSS--DLEQMKA-------L  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~v~--~~~--~~~~~~~-------~  241 (299)
                      .++++++|.|+ |.+|...++.+...|++|++++++.+..+.+.+++   +..  .++  +..  +.+.+.+       .
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ   89 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence            57889999988 99999999988888999999999877655443332   221  122  221  2222222       1


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      .+++|.++.+.+.
T Consensus        90 ~~~id~vi~~Ag~  102 (247)
T PRK08945         90 FGRLDGVLHNAGL  102 (247)
T ss_pred             hCCCCEEEECCcc
Confidence            2578999998864

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.53  E-value=0.096  Score=48.25  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHH------HHHHhc-CCCEE-EeCCCHHHHHHhc-C---Cc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKE------EALSLL-GADKF-VVSSDLEQMKALG-K---SL  245 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~------~~~~~~-g~~~v-~~~~~~~~~~~~~-~---~~  245 (299)
                      ..+.+|||.|+ |.+|...++.+...|.+|++++++..+.+      ...+.. +.+.+ .|..+.+.+.+.- +   ++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            56788999998 99999999999889999999999865421      111122 22222 2555555555442 2   79


Q ss_pred             cEEEEcCCCch------------hHHHHHHhcccC--cEEEEEcCC
Q 022313          246 DFIIDTASGDH------------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~~------------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                      |+||.|++...            ....+++.++..  ++++.++..
T Consensus       138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~  183 (390)
T PLN02657        138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI  183 (390)
T ss_pred             cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            99999887421            112334444433  478887755

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.53  E-value=0.091  Score=44.78  Aligned_cols=74  Identities=23%  Similarity=0.230  Sum_probs=51.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-E--EEeCCCHHHHHH-------hcCCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-K--FVVSSDLEQMKA-------LGKSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~-------~~~~~d  246 (299)
                      ++++||.|+ |.+|...+..+...|++|++++++.+..+.+.+.+   +.. .  ..+..+.+.+..       ..++.|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            357999998 99999999998889999999999887766553332   221 1  124445443322       235789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++|-+.+.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.52  E-value=0.32  Score=43.41  Aligned_cols=108  Identities=16%  Similarity=0.165  Sum_probs=73.3

Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHC-CC-eEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHhcCCccEE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAF-GL-NVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      ...+ +..+++.|+|+|..+..-++..... .. +|.+..+++++.+.+.+.+   +.+... .   +..++...+.|+|
T Consensus       122 ~La~-~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~-~---~~~~~av~~ADIV  196 (315)
T PRK06823        122 LLAP-QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNT-T---LDAAEVAHAANLI  196 (315)
T ss_pred             HhcC-CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEE-E---CCHHHHhcCCCEE
Confidence            3344 5678899999999998877776644 33 8999999999887665444   332221 1   2234455889999


Q ss_pred             EEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhh
Q 022313          249 IDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASL  287 (299)
Q Consensus       249 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l  287 (299)
                      +-+++....+- -.+.++++-.+..+|..  ....++..-+
T Consensus       197 ~taT~s~~P~~-~~~~l~~G~hi~~iGs~~p~~~Eld~~~l  236 (315)
T PRK06823        197 VTTTPSREPLL-QAEDIQPGTHITAVGADSPGKQELDAELV  236 (315)
T ss_pred             EEecCCCCcee-CHHHcCCCcEEEecCCCCcccccCCHHHH
Confidence            99887654222 23578999999999977  4555665433

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.52  E-value=0.1  Score=45.01  Aligned_cols=98  Identities=18%  Similarity=0.161  Sum_probs=62.4

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCch------HHHHHHHhcCCCEE--EeCCCHHHHHHh-------
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTS------KKEEALSLLGADKF--VVSSDLEQMKAL-------  241 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~------~~~~~~~~~g~~~v--~~~~~~~~~~~~-------  241 (299)
                      ++++++|.|+   +++|.+.++.+...|++|+++.++.+      ..+++.++.+....  .|-.+.+.+.++       
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            5788999986   48999999999999999988754322      23333222221112  244444444332       


Q ss_pred             cCCccEEEEcCCCc-------h----------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          242 GKSLDFIIDTASGD-------H----------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~~-------~----------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+++|+++++.|..       .                      ..+.+++.++.+|+++.++..
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~  149 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYL  149 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence            26799999998731       1                      124456677778999888765

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.52  E-value=0.085  Score=47.19  Aligned_cols=88  Identities=26%  Similarity=0.317  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|+++.|+|.|.||++.++.++..|.+|...++... .+.. +..+..++-       +.++-...|++...+....  
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~~~~~~y~~-------l~ell~~sDii~l~~Plt~~T  214 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-KELGARYVD-------LDELLAESDIISLHCPLTPET  214 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-hhcCceecc-------HHHHHHhCCEEEEeCCCChHH
Confidence            4689999999999999999999999999999998875 2222 344443331       3344455677765554321  


Q ss_pred             ---hHHHHHHhcccCcEEEEEc
Q 022313          257 ---PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 ---~~~~~~~~l~~~G~~v~~g  275 (299)
                         .-...+..|+++..+|-+|
T Consensus       215 ~hLin~~~l~~mk~ga~lVNta  236 (324)
T COG1052         215 RHLINAEELAKMKPGAILVNTA  236 (324)
T ss_pred             hhhcCHHHHHhCCCCeEEEECC
Confidence               1234566777777777665

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.51  E-value=0.077  Score=50.89  Aligned_cols=94  Identities=20%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh--
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP--  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~--  257 (299)
                      ++++++|+|+|++|.+++..+...|++|+++.++.++.+.+.++++.. .+...+.  ........|++++++.-...  
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~-~~~~~~~--~~~~~~~~diiINtT~vGm~~~  454 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQ-ALTLADL--ENFHPEEGMILANTTSVGMQPN  454 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCc-eeeHhHh--hhhccccCeEEEecccCCCCCC
Confidence            467899999999999999999999999999999988888876666532 2222111  11112357888887753210  


Q ss_pred             ---HHHHHHhcccCcEEEEEcC
Q 022313          258 ---FDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       258 ---~~~~~~~l~~~G~~v~~g~  276 (299)
                         .......+++...++++-.
T Consensus       455 ~~~~pl~~~~l~~~~~v~D~vY  476 (529)
T PLN02520        455 VDETPISKHALKHYSLVFDAVY  476 (529)
T ss_pred             CCCCcccHhhCCCCCEEEEecc
Confidence               0112345666666666633

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.15  Score=44.25  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +.++++|.|+ |.+|...++.+...|++|+++.++.++.+.+.++   .+... +  .|..+.+.+.++       .++.
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4568999998 9999999999988999999999887665544322   23322 1  244444443322       2578


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++|.+.|.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.17  Score=43.27  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHH---hcCCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALS---LLGAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~---~~g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ +++|...++.+...|++|++++++++ ..+.+.+   ..+.. ..+  |..+.+.+.++       .++
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999987 89999999999999999999998754 2233322   22321 122  33344333322       267


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.11  Score=43.53  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=50.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhc---CCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALG---KSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~---~~~d~v~d~~g~  254 (299)
                      +++||.|+ |.+|...+..+... .+|++++++.++.+.+.++...-+++  |..+.+.+.++.   ++.|.++.+.|.
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            57999987 99999888877777 99999999987766664333222222  444455554432   379999999874

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.12  Score=43.36  Aligned_cols=72  Identities=22%  Similarity=0.269  Sum_probs=51.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHh----c-CCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKAL----G-KSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~----~-~~~d~v~d~~g~  254 (299)
                      ++++|.|+ |.+|...++.+...|++|++++++.+..+++ +..+.. ...|-.+.+.+.++    . .++|+++.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL-QALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH-HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            46889987 9999999998888899999999998777766 344533 22344444444332    2 468999998774

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.48  E-value=0.073  Score=45.08  Aligned_cols=74  Identities=26%  Similarity=0.335  Sum_probs=50.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCCc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      ++++||.|+ |.+|...+..+...|++++++ .++++..+.+.+.+   +.. .++  |..+.+.+.+.       .+++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            468999988 999999998888889999998 88877665443332   221 122  34444443332       1479


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (247)
T PRK05565         85 DILVNNAGI   93 (247)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.48  E-value=0.11  Score=50.79  Aligned_cols=92  Identities=16%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchhHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHPFD  259 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~  259 (299)
                      +.|+|.|.|.+|+..++.++..|.++++++.++++.+.+ ++.|...+. |..+++.+++.+ ..+|.++-++++.....
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-RKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            578999999999999999999999999999999999988 577854443 555667777665 78999999999865222


Q ss_pred             H---HHHhcccCcEEEEE
Q 022313          260 A---YMSLLKVAGVYVLV  274 (299)
Q Consensus       260 ~---~~~~l~~~G~~v~~  274 (299)
                      .   ..+...|+-+++.-
T Consensus       480 ~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        480 KIVELCQQHFPHLHILAR  497 (601)
T ss_pred             HHHHHHHHHCCCCeEEEE
Confidence            2   23445566666543

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.1  Score=46.38  Aligned_cols=74  Identities=30%  Similarity=0.243  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc----------hHHHHHH---HhcCCCE-E--EeCCCHHHHHHh-
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST----------SKKEEAL---SLLGADK-F--VVSSDLEQMKAL-  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~----------~~~~~~~---~~~g~~~-v--~~~~~~~~~~~~-  241 (299)
                      ++++++|.|+ +++|.+.++.+...|++|++++++.          ++.+.+.   +..|... .  .|..+.+.++.+ 
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            5789999988 8999999999999999999998873          3333332   2334221 1  233444443322 


Q ss_pred             ------cCCccEEEEcC-C
Q 022313          242 ------GKSLDFIIDTA-S  253 (299)
Q Consensus       242 ------~~~~d~v~d~~-g  253 (299)
                            .+++|++++++ |
T Consensus        87 ~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         87 ERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHcCCccEEEECCcc
Confidence                  25789999988 5

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.47  E-value=0.061  Score=43.15  Aligned_cols=46  Identities=20%  Similarity=0.184  Sum_probs=40.9

Q ss_pred             CCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC
Q 022313          180 PGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG  225 (299)
Q Consensus       180 ~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g  225 (299)
                      .|..|++.|+| ++|...++-+...|++|+++.|+++.+..+.++..
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p   52 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETP   52 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCC
Confidence            67889999985 89999999999999999999999999998876655

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=95.47  E-value=0.13  Score=44.64  Aligned_cols=105  Identities=15%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-CEE-EeCCCHHHHHHhcCCccEE
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-DKF-VVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v-~~~~~~~~~~~~~~~~d~v  248 (299)
                      ++... .++++.+||=+|+|. |..+..+++..+++|+.++.+++..+.+.+.+.. ..+ +...+.....-..+.||+|
T Consensus        44 ~l~~l-~l~~~~~VLDiGcG~-G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V  121 (263)
T PTZ00098         44 ILSDI-ELNENSKVLDIGSGL-GGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMI  121 (263)
T ss_pred             HHHhC-CCCCCCEEEEEcCCC-ChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEE
Confidence            34444 348899999899863 5556677777788999999998888877554432 111 1111111111112579999


Q ss_pred             EEcC-----C--C-chhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTA-----S--G-DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~-----g--~-~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +..-     .  . ...++.+.+.|+|+|+++.....
T Consensus       122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            8621     1  1 23577788999999999987544

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.45  E-value=0.15  Score=43.67  Aligned_cols=74  Identities=19%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cCCC--EEE--eCCCHHHHHHh-------cCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LGAD--KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g~~--~v~--~~~~~~~~~~~-------~~~  244 (299)
                      ++++||.|+ |.+|...++.+...|++|++++++.++.+...++    .+..  +.+  |..+.+.+..+       .++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999988 8999999999998999999999987766554322    2211  122  33343333221       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        82 id~vv~~ag~   91 (259)
T PRK12384         82 VDLLVYNAGI   91 (259)
T ss_pred             CCEEEECCCc
Confidence            8999999873

>PLN02476 O-methyltransferase

Probab=95.44  E-value=0.27  Score=42.96  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHH---HhcCCC---EEEeCCCHHHHHHh-----cCC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEAL---SLLGAD---KFVVSSDLEQMKAL-----GKS  244 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~-----~~~  244 (299)
                      ..+.++||=+|.+ +|..++.+|+..  +.+++.++.+++..+.++   ++.|..   .++..+..+.++++     .+.
T Consensus       116 ~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        116 ILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             hcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            3677899999873 356666666655  347999999988766553   344643   23334434555544     257


Q ss_pred             ccEEEEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ||+||--....   ..++.+++.++++|.++.=-..
T Consensus       195 FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        195 YDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence            99998766643   2578889999999998754433

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.44  E-value=0.12  Score=46.98  Aligned_cols=77  Identities=27%  Similarity=0.343  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch-------------------HHHHHH---HhcCCC-EEEe---C
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS-------------------KKEEAL---SLLGAD-KFVV---S  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~-------------------~~~~~~---~~~g~~-~v~~---~  232 (299)
                      ...+|+|+|+|++|..+++.+...|. ++++++.+.-                   +.+.++   +++..+ .+-.   .
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~  106 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR  106 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence            44789999999999999999999998 7887775531                   111111   223321 1111   1


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCch
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      -+.+...++-+++|+|+||+.+..
T Consensus       107 i~~~~~~~~~~~~DvVvd~~d~~~  130 (355)
T PRK05597        107 LTWSNALDELRDADVILDGSDNFD  130 (355)
T ss_pred             cCHHHHHHHHhCCCEEEECCCCHH
Confidence            122333444578999999999866

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.41  E-value=0.14  Score=44.70  Aligned_cols=87  Identities=16%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHH--CCCeEE-EEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKA--FGLNVT-VLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~--~g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -+|.|+|.|.+|...++.+..  .+.++. +.++++++.+.+.+++|.....  .+.   .++....|+|++|++.....
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~--~~~---eell~~~D~Vvi~tp~~~h~   81 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV--VPL---DQLATHADIVVEAAPASVLR   81 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc--CCH---HHHhcCCCEEEECCCcHHHH
Confidence            578999999999887776665  356665 5566767766665677743322  122   22334579999999877655


Q ss_pred             HHHHHhcccCcEEEE
Q 022313          259 DAYMSLLKVAGVYVL  273 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~  273 (299)
                      +....+++.+-.++.
T Consensus        82 e~~~~aL~aGk~Vi~   96 (271)
T PRK13302         82 AIVEPVLAAGKKAIV   96 (271)
T ss_pred             HHHHHHHHcCCcEEE
Confidence            555667766654543

>PRK08264 short chain dehydrogenase; Validated

Probab=95.41  E-value=0.13  Score=43.50  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh---cCCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL---GKSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~---~~~~d~v~d~  251 (299)
                      .+++++|.|+ |.+|...++.+...|+ +|++++++.++.+.    .+.. .+  .+..+.+.+.++   .+.+|++|.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            5678999987 9999999999999999 99999998765442    2211 12  244444444433   2468999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      .|.
T Consensus        81 ag~   83 (238)
T PRK08264         81 AGI   83 (238)
T ss_pred             CCc
Confidence            886

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.41  E-value=0.14  Score=44.71  Aligned_cols=95  Identities=18%  Similarity=0.177  Sum_probs=70.9

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++....--.|+++.|+|. ..+|.-...++...+++|++.-+....++                    
T Consensus       134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~--------------------  193 (287)
T PRK14173        134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLP--------------------  193 (287)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHH--------------------
Confidence            467776776766766554358999999997 78999999999999999987764433222                    


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +..+..|+|+-++|.+..+  --+.++++..++++|..
T Consensus       194 -~~~~~ADIvIsAvGkp~~i--~~~~vk~GavVIDVGin  229 (287)
T PRK14173        194 -AVTRRADVLVVAVGRPHLI--TPEMVRPGAVVVDVGIN  229 (287)
T ss_pred             -HHHhhCCEEEEecCCcCcc--CHHHcCCCCEEEEccCc
Confidence             2335688999999987633  35778999999999876

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.41  E-value=0.24  Score=45.23  Aligned_cols=129  Identities=16%  Similarity=0.175  Sum_probs=79.3

Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch------------------
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS------------------  215 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~------------------  215 (299)
                      ...+|-...+.+.+- .+++....--+|.+|.|.|.|.+|+.+++.+...|++|++++.+..                  
T Consensus       181 ~r~~aTg~Gv~~~~~-~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~  259 (411)
T COG0334         181 GRSEATGYGVFYAIR-EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKE  259 (411)
T ss_pred             CCCcccceehHHHHH-HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhh
Confidence            334455555554443 4454444314899999999999999999999999999999998877                  


Q ss_pred             HHHHHHHhcCCCEEEeCCCH-------------------HHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcC
Q 022313          216 KKEEALSLLGADKFVVSSDL-------------------EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       216 ~~~~~~~~~g~~~v~~~~~~-------------------~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      +...+.+.+|++.+-+ .+.                   +.+..  =...+|.+.+.++. ...+.+.+...|.++.-..
T Consensus       260 ~~~~v~~~~ga~~i~~-~e~~~~~cDIl~PcA~~n~I~~~na~~--l~ak~V~EgAN~P~-t~eA~~i~~erGIl~~PD~  335 (411)
T COG0334         260 RRGSVAEYAGAEYITN-EELLEVDCDILIPCALENVITEDNADQ--LKAKIVVEGANGPT-TPEADEILLERGILVVPDI  335 (411)
T ss_pred             hhhhHHhhcCceEccc-cccccccCcEEcccccccccchhhHHH--hhhcEEEeccCCCC-CHHHHHHHHHCCCEEcChh
Confidence            4445544445433321 110                   11111  13568888888876 5666666667776654443


Q ss_pred             C---CceeeChhhh
Q 022313          277 P---SKVKFSPASL  287 (299)
Q Consensus       277 ~---~~~~~~~~~l  287 (299)
                      .   +.+..+-.++
T Consensus       336 laNAGGV~vS~~E~  349 (411)
T COG0334         336 LANAGGVIVSYLEW  349 (411)
T ss_pred             hccCcCeeeehHHH
Confidence            3   4444444443

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.37  E-value=0.12  Score=43.71  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch------HHHHH-HHhcC---------------C-CEEEeCC--
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS------KKEEA-LSLLG---------------A-DKFVVSS--  233 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~------~~~~~-~~~~g---------------~-~~v~~~~--  233 (299)
                      +...|+|+|.|++|-+++..+.+.|. ++.+++-++-      +.-.+ ....|               . -++...+  
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            34679999999999999999999998 7887764422      11111 01122               1 1121111  


Q ss_pred             -CHHHHHHh-cCCccEEEEcCCCchh-HHHHHHhcccCcEEEEEcCC
Q 022313          234 -DLEQMKAL-GKSLDFIIDTASGDHP-FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       234 -~~~~~~~~-~~~~d~v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +++.+.++ ..+||+|+||...-.+ ...+..|.+.+=.++..+..
T Consensus       109 ~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Ga  155 (263)
T COG1179         109 ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGA  155 (263)
T ss_pred             hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccc
Confidence             23444444 4689999999998653 23334466666666666433

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.089  Score=45.53  Aligned_cols=72  Identities=26%  Similarity=0.355  Sum_probs=49.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-EE--eCCCHHHHHHh-------cCCccEE
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-FV--VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v~--~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++|.|+ |++|...+..+...|++|++++++.++.+.+.+++   +.+. ++  |..+.+.+.++       .+++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899988 99999999988889999999999887766543322   3222 12  33333333222       2579999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            999884

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.37  E-value=0.16  Score=44.31  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++...---.|+++.|+|. ..+|.=.+.++...+++|++.-+....++                    
T Consensus       135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~--------------------  194 (282)
T PRK14169        135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLK--------------------  194 (282)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHH--------------------
Confidence            467777776766766554468999999997 68999999999999999987754322222                    


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +..+..|+++-++|.+..+  --++++++..++++|..
T Consensus       195 -~~~~~ADIvI~AvG~p~~i--~~~~vk~GavVIDvGin  230 (282)
T PRK14169        195 -QLTKEADILVVAVGVPHFI--GADAVKPGAVVIDVGIS  230 (282)
T ss_pred             -HHHhhCCEEEEccCCcCcc--CHHHcCCCcEEEEeecc
Confidence             2335688999999988733  24689999999999876

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.37  E-value=0.11  Score=43.83  Aligned_cols=75  Identities=24%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |.+|...++.+...|.+|+++.+++++.+.+...   .+... +  .|..+.+.+...       ..++
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4578999998 9999999999988999999999998775544322   33222 2  244444333221       2568


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |.++.+.|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999875

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.37  E-value=0.11  Score=44.97  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC---CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG---LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD  259 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g---~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  259 (299)
                      +|.|+|.|.+|...+..+...+   .+|+++++++++.+.+.+++|.. +.  .+.   .+.....|+||-++.... +.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~-~~--~~~---~~~~~~advVil~v~~~~-~~   76 (267)
T PRK11880          4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVR-AA--TDN---QEAAQEADVVVLAVKPQV-ME   76 (267)
T ss_pred             EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCe-ec--CCh---HHHHhcCCEEEEEcCHHH-HH
Confidence            5889999999998888877777   58999999988888775556642 21  111   122256789988887665 66


Q ss_pred             HHHHhccc
Q 022313          260 AYMSLLKV  267 (299)
Q Consensus       260 ~~~~~l~~  267 (299)
                      ..++.+++
T Consensus        77 ~v~~~l~~   84 (267)
T PRK11880         77 EVLSELKG   84 (267)
T ss_pred             HHHHHHHh
Confidence            66655554

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.37  E-value=0.17  Score=44.45  Aligned_cols=96  Identities=19%  Similarity=0.161  Sum_probs=71.2

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      +.+||...+....++....--.|++++|+|. ..+|.=...++...+++|++.-.....+                    
T Consensus       145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl--------------------  204 (299)
T PLN02516        145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDP--------------------  204 (299)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCH--------------------
Confidence            3567777777777766554367999999997 6899999999998999998885432222                    


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       .+..+..|+++-++|.+..+  -.++++++..++++|..
T Consensus       205 -~~~~~~ADIvv~AvGk~~~i--~~~~vk~gavVIDvGin  241 (299)
T PLN02516        205 -ESIVREADIVIAAAGQAMMI--KGDWIKPGAAVIDVGTN  241 (299)
T ss_pred             -HHHHhhCCEEEEcCCCcCcc--CHHHcCCCCEEEEeecc
Confidence             22336688999999886522  25688999999999866

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=95.36  E-value=0.24  Score=39.06  Aligned_cols=95  Identities=15%  Similarity=0.265  Sum_probs=59.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHC-CCeEEEEeC--CchHHHHHHH---hcCC--C----------------EEEeCCCHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF-GLNVTVLST--STSKKEEALS---LLGA--D----------------KFVVSSDLEQM  238 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~--~~~~~~~~~~---~~g~--~----------------~v~~~~~~~~~  238 (299)
                      +|.|+|.|.+|...++.+... +.++.++..  +.+....+.+   ..|.  .                +++...++..+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~~   81 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPANL   81 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHHC
Confidence            578999999999988887744 556665543  3334444432   1231  1                11222334444


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .|-.-++|+|+||+|.-...+.+...+..+-+-|.++.+
T Consensus        82 ~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap  120 (149)
T smart00846       82 PWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAP  120 (149)
T ss_pred             cccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCC
Confidence            444568999999988755456666778777677777666

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK08328 hypothetical protein; Provisional

Probab=95.36  E-value=0.16  Score=43.27  Aligned_cols=83  Identities=19%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH-----------------------HHhcCCCEEEeC---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA-----------------------LSLLGADKFVVS---  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~-----------------------~~~~g~~~v~~~---  232 (299)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+.-+...+                       .+++..+--++.   
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~  105 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG  105 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence            44679999999999999999999998 777776443222111                       122332211111   


Q ss_pred             -CCHHHHHHhcCCccEEEEcCCCchhHHHHHH
Q 022313          233 -SDLEQMKALGKSLDFIIDTASGDHPFDAYMS  263 (299)
Q Consensus       233 -~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~  263 (299)
                       -+.+.+.++-+++|+|+||+.+.. .+..+.
T Consensus       106 ~~~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~  136 (231)
T PRK08328        106 RLSEENIDEVLKGVDVIVDCLDNFE-TRYLLD  136 (231)
T ss_pred             cCCHHHHHHHHhcCCEEEECCCCHH-HHHHHH
Confidence             112333444578999999999866 444444

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.36  E-value=0.094  Score=46.72  Aligned_cols=75  Identities=21%  Similarity=0.160  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH--h-cCC---CEEE--eCCCHHHHHHhcCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS--L-LGA---DKFV--VSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~--~-~g~---~~v~--~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .+++|||.|+ |.+|...+..+...|.+|++++++..+.+.+.+  + .+.   -+++  +..+.+.+.++-.++|+||.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            4689999998 999999999888889999988887654333211  1 111   1222  33344455555567999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +++.
T Consensus        84 ~A~~   87 (322)
T PLN02986         84 TASP   87 (322)
T ss_pred             eCCC
Confidence            8873

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.35  E-value=0.1  Score=48.92  Aligned_cols=71  Identities=25%  Similarity=0.352  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc-hHH----HHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST-SKK----EEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~-~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .+++++|+|+|.+|+.++..+...|++|+++++.. +..    +++ ++.|.. ++..+..+   +..+++|+|+.+.|-
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l-~~~~~~-~~~~~~~~---~~~~~~d~vv~~~g~   78 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEEL-GELGIE-LVLGEYPE---EFLEGVDLVVVSPGV   78 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHH-HhcCCE-EEeCCcch---hHhhcCCEEEECCCC
Confidence            46889999998899999999999999999999875 222    223 344544 32222222   233679999998885


Q ss_pred             c
Q 022313          255 D  255 (299)
Q Consensus       255 ~  255 (299)
                      .
T Consensus        79 ~   79 (450)
T PRK14106         79 P   79 (450)
T ss_pred             C
Confidence            3

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.35  E-value=0.17  Score=42.31  Aligned_cols=95  Identities=22%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE--EEeCCCHHHHHHhcCCccEEEEc
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK--FVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      .++++.+||-+|+|. |..+..+++.. .+++.++.+++..+.+.+.   .+.+.  +...+..+... ..+.||+|+..
T Consensus        75 ~~~~~~~VLeiG~Gs-G~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~  151 (212)
T PRK00312         75 ELKPGDRVLEIGTGS-GYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVT  151 (212)
T ss_pred             CCCCCCEEEEECCCc-cHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEc
Confidence            348889999998864 55555555553 4899999887776665443   34322  22222111111 12579999876


Q ss_pred             CCCchhHHHHHHhcccCcEEEEE
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ..-........+.|+++|+++..
T Consensus       152 ~~~~~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        152 AAAPEIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCchhhhHHHHHhcCCCcEEEEE
Confidence            65555567788999999998765

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.34  E-value=0.22  Score=42.46  Aligned_cols=99  Identities=19%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHH--hcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKA--LGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~--~~~~~d~v~  249 (299)
                      .+.+|++|+=.|.|+ |.+++.+|+..|.  +|+.+...++..+.+.+.+   |....+.... .++.+  ....||.+|
T Consensus        91 gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-~Dv~~~~~~~~vDav~  168 (256)
T COG2519          91 GISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL-GDVREGIDEEDVDAVF  168 (256)
T ss_pred             CCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe-ccccccccccccCEEE
Confidence            349999999988764 7788888887764  9999999888777665444   4322111111 11111  124899998


Q ss_pred             EcCCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          250 DTASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      --...+. .++.+.+.|+++|.++.+-.+
T Consensus       169 LDmp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         169 LDLPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             EcCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            7777764 688899999999999988655

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.16  Score=43.67  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH--HhcCCC-EE--EeCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL--SLLGAD-KF--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~--~~~g~~-~v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++++|.|+ |++|...++.+...|++|++++++++..+...  .+.+.. ..  .|..+.+.+.++       .++.|
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id   84 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID   84 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4688999987 99999999999999999999998865333221  122322 11  234444443332       25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        85 ~vi~~ag~   92 (263)
T PRK08226         85 ILVNNAGV   92 (263)
T ss_pred             EEEECCCc
Confidence            99998883

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.33  E-value=0.13  Score=48.62  Aligned_cols=72  Identities=14%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      -.+++|+|+|.|..|.+++.+++..|+.|++.++.......+.+++|.......+..+.+    ..+|+|+-..|-
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~----~~~d~vV~Spgi   84 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQL----DSFSLVVTSPGW   84 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHh----cCCCEEEeCCCC
Confidence            455679999999999999999999999999999765554443356676544322222222    357888876663

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.33  E-value=0.11  Score=44.10  Aligned_cols=75  Identities=25%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEE-EeCCchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTV-LSTSTSKKEEALSL---LGADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~-~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |.+|...+..+...|++|++ ..++.++.+.+.++   .+... .  .|..+.+.+..+       .++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999998 89999999999999998776 46666555443222   34321 2  233344433322       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.33  E-value=0.17  Score=44.56  Aligned_cols=95  Identities=19%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      ..||...+....++....--.|++++|+|. ..+|.-...++...+++|++.-+....++                    
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~--------------------  196 (297)
T PRK14186        137 LRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLA--------------------  196 (297)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH--------------------
Confidence            456666666666665554368999999997 68999999999999999988754433222                    


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +..+..|+++-++|-+..+  --+.++++..++++|..
T Consensus       197 -~~~~~ADIvIsAvGkp~~i--~~~~ik~gavVIDvGin  232 (297)
T PRK14186        197 -SITREADILVAAAGRPNLI--GAEMVKPGAVVVDVGIH  232 (297)
T ss_pred             -HHHhhCCEEEEccCCcCcc--CHHHcCCCCEEEEeccc
Confidence             2235688999999977632  25688899999999866

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.15  Score=43.61  Aligned_cols=75  Identities=21%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH--HhcCCC-EE--EeCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL--SLLGAD-KF--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~--~~~g~~-~v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++||.|+ |++|...++.+...|++|++++++++..+...  ++.+.. ..  .|..+.+.+...       .+++|
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   85 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID   85 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            5678999998 89999999999989999999998877653221  122322 11  233344433222       25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.+.|.
T Consensus        86 ~vi~~ag~   93 (258)
T PRK08628         86 GLVNNAGV   93 (258)
T ss_pred             EEEECCcc
Confidence            99999983

>PRK09135 pteridine reductase; Provisional

Probab=95.32  E-value=0.15  Score=43.29  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhc----CC-CEE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLL----GA-DKF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~----g~-~~v--~~~~~~~~~~~~-------~~  243 (299)
                      .++++||.|+ |.+|..+++.+...|++|++++++.. ..+.+.+.+    +. ..+  .|..+.+.+..+       .+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999998 99999999999889999999998643 333332221    11 112  244444443332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++|.+.|.
T Consensus        85 ~~d~vi~~ag~   95 (249)
T PRK09135         85 RLDALVNNASS   95 (249)
T ss_pred             CCCEEEECCCC
Confidence            78999999883

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.32  E-value=0.12  Score=44.49  Aligned_cols=74  Identities=24%  Similarity=0.265  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHh----cCCC-EE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSL----LGAD-KF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ +++|...+..+...|++|+++.+ ++++.+.+.++    .+.. ..  .|..+.+.+.++       -+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5789999998 89999999999999999988765 44444333222    2322 12  244444443322       25


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      .+|+++.+.|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            7899999885

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=95.31  E-value=0.22  Score=44.24  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Q 022313          179 QPGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA  220 (299)
Q Consensus       179 ~~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~  220 (299)
                      -.|+++||.|+   .++|.+.++.+...|++|++ .+..+++++.
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~   50 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIF   50 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHH
Confidence            35889999988   78999999999999999988 5555544433

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.31  E-value=0.18  Score=44.07  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+.+..++....--.|++++|+|. ..+|.=.+.++...++.|++.-+....+                    
T Consensus       135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl--------------------  194 (282)
T PRK14166        135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDL--------------------  194 (282)
T ss_pred             CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCH--------------------
Confidence            3467777777777766554368999999997 6899999999998899998766543222                    


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       ++..+..|+++-++|.+..+.  -++++++..++++|..
T Consensus       195 -~~~~~~ADIvIsAvGkp~~i~--~~~vk~GavVIDvGin  231 (282)
T PRK14166        195 -SLYTRQADLIIVAAGCVNLLR--SDMVKEGVIVVDVGIN  231 (282)
T ss_pred             -HHHHhhCCEEEEcCCCcCccC--HHHcCCCCEEEEeccc
Confidence             223366899999999887333  4689999999999955

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.28  E-value=0.18  Score=43.27  Aligned_cols=94  Identities=17%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC----
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG----  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~----  254 (299)
                      .++.+||-+|+|. |..+..+++ .+.+++.++.+++.++.+.+......++..+- +.+.-..+.||+|+....-    
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~  117 (251)
T PRK10258         41 RKFTHVLDAGCGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWCG  117 (251)
T ss_pred             cCCCeEEEeeCCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhcC
Confidence            4678899999875 655555554 57899999999988888854443333332221 1111123569999875431    


Q ss_pred             --chhHHHHHHhcccCcEEEEEc
Q 022313          255 --DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       255 --~~~~~~~~~~l~~~G~~v~~g  275 (299)
                        ...+..+.+.|+++|.++...
T Consensus       118 d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        118 NLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             CHHHHHHHHHHHcCCCeEEEEEe
Confidence              234778889999999998764

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.096  Score=44.79  Aligned_cols=72  Identities=25%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      .++++||.|+ |++|...++.+...|++|++++++++.  .. ....... ..|..+.+.+.++       .+++|++|.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   81 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--TV-DGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVN   81 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--hh-cCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999988 899999999999999999999987654  11 1111111 1244444443332       257899999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        82 ~ag~   85 (252)
T PRK07856         82 NAGG   85 (252)
T ss_pred             CCCC
Confidence            9873

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.28  E-value=0.54  Score=39.93  Aligned_cols=98  Identities=18%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHH---HhcCCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEAL---SLLGAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~---~~~g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      .++++||.|+ |.+|...++.+...|+++++..+.. +......   ++.+.. ..  .|..+.+.+.++       .++
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            3678999998 8999999988888999987776542 3222211   233322 12  233344333222       257


Q ss_pred             ccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|.+|.+.|..                         ...+.+.+.++..|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~  142 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASV  142 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcch
Confidence            89999999831                         0133445566678899999876

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.28  E-value=0.31  Score=42.00  Aligned_cols=94  Identities=23%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC--
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG--  254 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~--  254 (299)
                      ++++++||=+|+|. |..+..+++.. +.+|+.++.++.-.+.+.+.+....++..+-. .. .....+|+|+-...-  
T Consensus        29 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~-~~-~~~~~fD~v~~~~~l~~  105 (258)
T PRK01683         29 LENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIA-SW-QPPQALDLIFANASLQW  105 (258)
T ss_pred             CcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchh-cc-CCCCCccEEEEccChhh
Confidence            37788888899863 66677778766 46999999999888887655543333333221 11 123579999765441  


Q ss_pred             ----chhHHHHHHhcccCcEEEEE
Q 022313          255 ----DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       255 ----~~~~~~~~~~l~~~G~~v~~  274 (299)
                          ...+..+.+.|+++|+++..
T Consensus       106 ~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        106 LPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEE
Confidence                23577888999999998875

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.25  E-value=0.16  Score=48.69  Aligned_cols=89  Identities=28%  Similarity=0.347  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|++|.|+|.|.+|...++.++.+|.+|+++++.... +.. ..+|...+       .+.++....|+|+.++....   
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-~~~g~~~~-------~l~ell~~aDiV~l~lP~t~~t~  209 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-AQLGVELV-------SLDELLARADFITLHTPLTPETR  209 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-HhcCCEEE-------cHHHHHhhCCEEEEccCCChHhh
Confidence            5789999999999999999999999999999985432 222 34555332       23344456788888777532   


Q ss_pred             -hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 -PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 -~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                       .+ ...+..|+++..++.++-.
T Consensus       210 ~li~~~~l~~mk~ga~lIN~aRG  232 (526)
T PRK13581        210 GLIGAEELAKMKPGVRIINCARG  232 (526)
T ss_pred             cCcCHHHHhcCCCCeEEEECCCC
Confidence             12 4567788888877777543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.25  E-value=0.15  Score=48.20  Aligned_cols=71  Identities=23%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH-----HHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK-----KEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~-----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      ..+++|+|+|+|.+|+.++.+++..|.+|++++..+..     .+.+ ++.|.+........     ....+|+|+.+.|
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l-~~~gv~~~~~~~~~-----~~~~~D~Vv~s~G   87 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAIL-EALGATVRLGPGPT-----LPEDTDLVVTSPG   87 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHH-HHcCCEEEECCCcc-----ccCCCCEEEECCC
Confidence            35678999999999999999999999999999866531     1223 56676554432211     2356899998888


Q ss_pred             Cc
Q 022313          254 GD  255 (299)
Q Consensus       254 ~~  255 (299)
                      -+
T Consensus        88 i~   89 (480)
T PRK01438         88 WR   89 (480)
T ss_pred             cC
Confidence            54

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=95.25  E-value=0.12  Score=43.19  Aligned_cols=81  Identities=19%  Similarity=0.312  Sum_probs=53.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHC--CC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF--GL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD  259 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~--g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  259 (299)
                      +|.|+|+|.+|.....+.+.-  .. .+++.+++.++..++.+.++...+      ..++++....|++++|.+.....+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~------s~ide~~~~~DlvVEaAS~~Av~e   75 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV------SDIDELIAEVDLVVEAASPEAVRE   75 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc------ccHHHHhhccceeeeeCCHHHHHH
Confidence            477899999999999999843  45 688888888888877556664322      123333355666666666655444


Q ss_pred             HHHHhcccCc
Q 022313          260 AYMSLLKVAG  269 (299)
Q Consensus       260 ~~~~~l~~~G  269 (299)
                      -+.+.|+.+-
T Consensus        76 ~~~~~L~~g~   85 (255)
T COG1712          76 YVPKILKAGI   85 (255)
T ss_pred             HhHHHHhcCC
Confidence            4555555543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.24  E-value=0.19  Score=43.82  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=69.5

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      ..||...+....++....--.|++++|+|. ..+|.-.+.++...++.|++.-.....+                     
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l---------------------  194 (281)
T PRK14183        136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDL---------------------  194 (281)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCH---------------------
Confidence            467666666666665554468999999998 5899999999998999888654322211                     


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+..|+++-++|.+..+  --++++++..++++|..
T Consensus       195 ~~~~~~ADIvV~AvGkp~~i--~~~~vk~gavvIDvGin  231 (281)
T PRK14183        195 KAHTKKADIVIVGVGKPNLI--TEDMVKEGAIVIDIGIN  231 (281)
T ss_pred             HHHHhhCCEEEEecCccccc--CHHHcCCCcEEEEeecc
Confidence            22346689999999987632  35788999999999855

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.24  E-value=0.16  Score=43.14  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=28.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      ..+|+|+|.|++|..++..+.+.|. ++++++.+
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3679999999999999999999998 88887755

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.22  E-value=0.028  Score=52.74  Aligned_cols=92  Identities=16%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             ccCCCCCCEEE----EEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHhcCCccEE
Q 022313          175 HKMNQPGKSLG----VIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       175 ~~~~~~g~~vl----I~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      ..++++++.+|    |+|+ |++|.+++|+++..|++|+.+.+.+.+.... +..+.. .+++....+...++..     
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~-----  101 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAG-WGDRFGALVFDATGITDPADLKA-----  101 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccC-cCCcccEEEEECCCCCCHHHHHH-----
Confidence            34457888887    7765 9999999999999999999987665432222 122333 2333332111111100     


Q ss_pred             EEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                           -...+...++.|.++|+++.++..
T Consensus       102 -----~~~~~~~~l~~l~~~griv~i~s~  125 (450)
T PRK08261        102 -----LYEFFHPVLRSLAPCGRVVVLGRP  125 (450)
T ss_pred             -----HHHHHHHHHHhccCCCEEEEEccc
Confidence                 012366778889999999999877

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.20  E-value=0.15  Score=43.30  Aligned_cols=89  Identities=19%  Similarity=0.232  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHH-------------------HHHH---HhcCCC-EEEeCC--
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKK-------------------EEAL---SLLGAD-KFVVSS--  233 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~-------------------~~~~---~~~g~~-~v~~~~--  233 (299)
                      ...+|+|+|+|++|...+..+.+.|. ++++++.+.-+.                   +.++   +++..+ .+....  
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~   99 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER   99 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence            35789999999999999999999998 777775442111                   1111   222221 121111  


Q ss_pred             -CHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccC
Q 022313          234 -DLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVA  268 (299)
Q Consensus       234 -~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~  268 (299)
                       +.+...++-.++|+|++|...........+.....
T Consensus       100 i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~  135 (228)
T cd00757         100 LDAENAEELIAGYDLVLDCTDNFATRYLINDACVKL  135 (228)
T ss_pred             eCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHc
Confidence             12334444578999999999876433333333333

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.20  E-value=0.17  Score=44.22  Aligned_cols=95  Identities=23%  Similarity=0.207  Sum_probs=70.2

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHH----CCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKA----FGLNVTVLSTSTSKKEEALSLLGADKFVVSSD  234 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~----~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~  234 (299)
                      .+||...+....++....--.|+++.|+|. ..+|.=...++..    .+++|++.......+++               
T Consensus       136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~---------------  200 (286)
T PRK14184        136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAE---------------  200 (286)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHH---------------
Confidence            457777777777766654468999999997 6899999998887    78888887755433332               


Q ss_pred             HHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       235 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                            ..+..|+|+-++|.+..+.  -+.++++..++++|..
T Consensus       201 ------~~~~ADIVI~AvG~p~li~--~~~vk~GavVIDVGi~  235 (286)
T PRK14184        201 ------ECREADFLFVAIGRPRFVT--ADMVKPGAVVVDVGIN  235 (286)
T ss_pred             ------HHHhCCEEEEecCCCCcCC--HHHcCCCCEEEEeeee
Confidence                  2356889999998876433  3677999999999865

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.20  E-value=0.22  Score=41.15  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEEEeCCCHHHHHHhcCCccEEEEcCC--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKFVVSSDLEQMKALGKSLDFIIDTAS--  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g--  253 (299)
                      .++.+||-+|+|. |..+..+++ .|.+|++++.+++-.+.+.+.   .+........+.... ...+.+|+|+...-  
T Consensus        29 ~~~~~vLDiGcG~-G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~~~  105 (195)
T TIGR00477        29 VAPCKTLDLGCGQ-GRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA-ALNEDYDFIFSTVVFM  105 (195)
T ss_pred             CCCCcEEEeCCCC-CHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc-cccCCCCEEEEecccc
Confidence            4556888888863 666666666 478999999998766655322   232211111111111 12357999976422  


Q ss_pred             ---C---chhHHHHHHhcccCcEEEEE
Q 022313          254 ---G---DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       254 ---~---~~~~~~~~~~l~~~G~~v~~  274 (299)
                         .   ...++.+.+.|+++|.++.+
T Consensus       106 ~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       106 FLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence               1   23577788899999996555

Part of a tellurite-reducing operon tehA and tehB

>TIGR02415 23BDH acetoin reductases

Probab=95.19  E-value=0.14  Score=43.75  Aligned_cols=73  Identities=21%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-EE--EeCCCHHHHHHh-------cCCccE
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-KF--VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~-------~~~~d~  247 (299)
                      ++++|.|+ |.+|...++.+...|++|+++.+++++.+.+.++   .+.. ..  .|..+.+.+.++       .++.|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899987 9999999999999999999999987665544333   2321 11  244444443332       257899


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9998874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.19  E-value=0.28  Score=43.40  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=55.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH--
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA--  260 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~--  260 (299)
                      +|.|+|.|.+|...+.-+...|.+|++.++++++.+.+. +.+....   .+.+.+.+.....|+|+-++.... .+.  
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-~~g~~~~---~s~~~~~~~~~~~dvIi~~vp~~~-~~~v~   76 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-EDRTTGV---ANLRELSQRLSAPRVVWVMVPHGI-VDAVL   76 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCccc---CCHHHHHhhcCCCCEEEEEcCchH-HHHHH
Confidence            578899999999888888888999999999999888874 4453221   122222222244677777666542 333  


Q ss_pred             --HHHhcccCcEEEEEc
Q 022313          261 --YMSLLKVAGVYVLVG  275 (299)
Q Consensus       261 --~~~~l~~~G~~v~~g  275 (299)
                        ....++++-.+++.+
T Consensus        77 ~~l~~~l~~g~ivid~s   93 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGG   93 (298)
T ss_pred             HHHHhhCCCCCEEEECC
Confidence              233344444454443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.18  E-value=0.49  Score=40.23  Aligned_cols=69  Identities=19%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-CEE--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-DKF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |.+|...+..+...|++|++++++.     . +..+. ...  .|..+.+.+.++       .+++|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----L-TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----h-hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5688999998 8999999999988999999999875     1 22231 111  233444433332       2568999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.+.|.
T Consensus        81 i~~ag~   86 (252)
T PRK08220         81 VNAAGI   86 (252)
T ss_pred             EECCCc
Confidence            999885

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.2  Score=44.04  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=70.8

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++....--.|++++|+|. ..+|.=...++...+++|++.......++                    
T Consensus       139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~--------------------  198 (294)
T PRK14187        139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLA--------------------  198 (294)
T ss_pred             ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHH--------------------
Confidence            456666666666766554478999999997 68999999999999999988765432222                    


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +..+..|+++-++|.+..+  --++++++..++++|..
T Consensus       199 -~~~~~ADIvVsAvGkp~~i--~~~~ik~gaiVIDVGin  234 (294)
T PRK14187        199 -DYCSKADILVAAVGIPNFV--KYSWIKKGAIVIDVGIN  234 (294)
T ss_pred             -HHHhhCCEEEEccCCcCcc--CHHHcCCCCEEEEeccc
Confidence             2336688999999987632  34678899999999865

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.17  E-value=0.13  Score=46.96  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH-------------------H---HhcCC-CEEEeC---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA-------------------L---SLLGA-DKFVVS---  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~-------------------~---~~~g~-~~v~~~---  232 (299)
                      ...+|+|+|+|++|..++..+.+.|. ++++++.+.-+...+                   +   +++.. ..+...   
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~  119 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER  119 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence            45679999999999999999999998 888887652221111                   1   22221 111111   


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCch
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      -+.+.+.++-+++|+|+||+.+..
T Consensus       120 i~~~~~~~~~~~~DlVid~~Dn~~  143 (370)
T PRK05600        120 LTAENAVELLNGVDLVLDGSDSFA  143 (370)
T ss_pred             cCHHHHHHHHhCCCEEEECCCCHH
Confidence            122344445578999999999876

>PRK05599 hypothetical protein; Provisional

Probab=95.17  E-value=0.13  Score=43.98  Aligned_cols=71  Identities=15%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC--EEE--eCCCHHHHHH-------hcCCccE
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD--KFV--VSSDLEQMKA-------LGKSLDF  247 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~v~--~~~~~~~~~~-------~~~~~d~  247 (299)
                      +++|.|+ +++|...++.+. .|++|+++++++++.+.+.+++   |.+  ..+  |-.+.+.+++       ..+++|+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            6889988 899999888776 4899999999988877664443   322  222  3444433332       2367999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++.+.|.
T Consensus        81 lv~nag~   87 (246)
T PRK05599         81 AVVAFGI   87 (246)
T ss_pred             EEEecCc
Confidence            9998874

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=95.16  E-value=0.22  Score=44.90  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEEcCC--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIIDTAS--  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~g--  253 (299)
                      .++.+||=+|+|. |..+..+++..+ .+++.++.+++-.+.+.++....  .++ ..+.+......+.||+|+.+..  
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i-~gD~e~lp~~~~sFDvVIs~~~L~  189 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKII-EGDAEDLPFPTDYADRYVSAGSIE  189 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEE-eccHHhCCCCCCceeEEEEcChhh
Confidence            5678888899865 666777777664 58999999988777775443311  122 1111111111356999886432  


Q ss_pred             ---C-chhHHHHHHhcccCcEEEEEcC
Q 022313          254 ---G-DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       254 ---~-~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                         . ...++.+.+.|+++|+++.++.
T Consensus       190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        190 YWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             hCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence               1 2357889999999999988764

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.16  E-value=0.19  Score=43.94  Aligned_cols=95  Identities=16%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+||...+....++....--.|+++.|+|. ..+|.-...++...+++|++.-.....+                     
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l---------------------  194 (284)
T PRK14170        136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDL---------------------  194 (284)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCH---------------------
Confidence            467776776666665554368999999997 6899999999999999988775433222                     


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++..+..|+++-++|.+..+  --++++++..++++|..
T Consensus       195 ~~~~~~ADIvI~AvG~~~~i--~~~~vk~GavVIDvGin  231 (284)
T PRK14170        195 PQVAKEADILVVATGLAKFV--KKDYIKPGAIVIDVGMD  231 (284)
T ss_pred             HHHHhhCCEEEEecCCcCcc--CHHHcCCCCEEEEccCc
Confidence            22335688999999987632  34688999999999866

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.15  E-value=0.13  Score=45.40  Aligned_cols=67  Identities=19%  Similarity=0.224  Sum_probs=49.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      +|.|+|.|.+|...+..+...|.+|+++++++++.+.+ .+.|....   .+   ..+.....|+||.++....
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---~~~~~~~aDivi~~vp~~~   67 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-LAAGAVTA---ET---ARQVTEQADVIFTMVPDSP   67 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCccc---CC---HHHHHhcCCEEEEecCCHH
Confidence            37789999999988888888899999999999888877 45564221   11   2233356788888887654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.15  E-value=0.25  Score=42.93  Aligned_cols=34  Identities=24%  Similarity=0.495  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      .+.+|+|+|+|++|..++..+.+.|. ++++++.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999996 88888755

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.15  E-value=0.12  Score=46.28  Aligned_cols=87  Identities=16%  Similarity=0.274  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHH-HCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGK-AFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~-~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      .|+++.|+|.|.+|...++.++ .+|.+|+..++...... . ..++....       .+.++-...|+|..++.-..  
T Consensus       144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~-~~~~~~~~-------~l~ell~~sDvv~lh~plt~~T  214 (323)
T PRK15409        144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-E-ERFNARYC-------DLDTLLQESDFVCIILPLTDET  214 (323)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-H-HhcCcEec-------CHHHHHHhCCEEEEeCCCChHH
Confidence            6799999999999999999998 89999998887632221 1 23343211       12233345566666555322  


Q ss_pred             ---hHHHHHHhcccCcEEEEEc
Q 022313          257 ---PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 ---~~~~~~~~l~~~G~~v~~g  275 (299)
                         .-...+..|+++..+|.++
T Consensus       215 ~~li~~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        215 HHLFGAEQFAKMKSSAIFINAG  236 (323)
T ss_pred             hhccCHHHHhcCCCCeEEEECC
Confidence               1233556666666665554

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=95.15  E-value=0.15  Score=43.01  Aligned_cols=73  Identities=23%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhc---CCC-EE--EeCCCHHHHHH-------hcCCcc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLL---GAD-KF--VVSSDLEQMKA-------LGKSLD  246 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~-------~~~~~d  246 (299)
                      +++||.|+ |++|...++.+...|++++++.+ ++++.+...++.   +.. .+  .|..+.+.+.+       ..+++|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            46899987 99999999999999999998887 444443332222   211 11  23334333322       136789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      .+|.+.|.
T Consensus        81 ~vi~~ag~   88 (242)
T TIGR01829        81 VLVNNAGI   88 (242)
T ss_pred             EEEECCCC
Confidence            99999874

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		2e-68
2cf5_A	357	Crystal Structures Of The Arabidopsis Cinnamyl Alco		3e-51
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		2e-48
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		2e-45
1ps0_A	360	Crystal Structure Of The Nadp(H)-Dependent Cinnamyl		6e-29
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		3e-28
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		9e-28
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		2e-23
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		7e-23
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-20
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		1e-19
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-19
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		4e-18
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		5e-17
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		8e-15
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		4e-14
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		8e-14
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		7e-12
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		7e-12
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		1e-11
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		2e-11
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		2e-11
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		2e-11
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-11
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		4e-11
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		4e-11
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		4e-11
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		5e-11
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		5e-11
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		1e-10
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-10
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		9e-10
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		1e-09
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		1e-09
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		4e-09
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		4e-09
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		5e-09
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		6e-09
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		2e-08
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		2e-08
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		2e-08
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		2e-08
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		3e-08
3ip1_A	404	Structure Of Putative Alcohol Dehydrogenase (Tm_042		1e-07
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		1e-07
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		2e-07
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-07
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		2e-07
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		2e-07
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		3e-07
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		3e-07
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-07
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		5e-07
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		6e-07
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		7e-07
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		9e-07
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		2e-06
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		2e-06
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-05
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-05
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		5e-05
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		2e-04
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		4e-04
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		7e-04
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		8e-04
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		8e-04
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		8e-04
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		9e-04

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/275 (51%), Positives = 180/275 (65%)
Query: 11  LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHE 70
            GWAARD SG LSP++F+RRA G +DV   + +CGVC++D+   +N  G S YPLVPGHE
Sbjct: 18  FGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHE 77
Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
           IVG V EVG  V +  VGD VGVG  V +C  CE C + LE +C + + T+ +I  DGTI
Sbjct: 78  IVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTI 137
Query: 131 TKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLG 190
           T GGYS+++V +ERY  +  ++            GITVY+P+    +++PGK +G++GLG
Sbjct: 138 TYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLG 197
Query: 191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID 250
           GLGH+AVKF KAFG  VTV+STS SKKEEAL   GAD F+VS D EQM+A   +LD IID
Sbjct: 198 GLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIID 257
Query: 251 TASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA 285
           T S  HP      LLK  G  +LVG P K    PA
Sbjct: 258 TVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPA 292

>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol Dehydrogenases, Atcad5 Length = 357

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/270 (45%), Positives = 172/270 (63%)
Query: 6   ASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPL 65
           A +   GWAARDPSG+LSPY++  R  G +DV+I I  CG+C+ D+  T+N  G S YP+
Sbjct: 6   AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM 65
Query: 66  VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID 125
           VPGHE+VG V EVG +VS+F VGD VGVG  V  C  C  C   LE +C + ++++N + 
Sbjct: 66  VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVY 125
Query: 126 ADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLG 185
            +G  T+GG++   VVH+++  KI               G+TVY+P+    + QPG   G
Sbjct: 126 INGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGG 185
Query: 186 VIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL 245
           ++GLGG+GHM VK  KA G +VTV+S+S  K+EEAL  LGAD +V+ SD  +M  L  SL
Sbjct: 186 ILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSL 245
Query: 246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVG 275
           D++IDT    H  + Y+SLLK+ G  +L+G
Sbjct: 246 DYVIDTVPVHHALEPYLSLLKLDGKLILMG 275

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/280 (42%), Positives = 161/280 (57%), Gaps = 7/280 (2%)
Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
            ++A+ P   L P    RR  G +DV I I +CGVC++D+   R++   + YP VPGHEI
Sbjct: 28  AYSAKQP---LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEI 84
Query: 72  VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT-I 130
           VG V  VG  V ++  GD VGVG  V+SC+ CE C DGLE +C     T+N+   D    
Sbjct: 85  VGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGH 144
Query: 131 TKGGYSSYIVVHERYCYKIANDYXXXXXXXXXX-XGITVYTPMMRHKMNQPGKSLGVIGL 189
           T GGYS  IVVHERY  +I +              GIT Y+P +RH    PGK +GV+G+
Sbjct: 145 TLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGI 203
Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII 249
           GGLGHM +K   A G +V   +TS +K+E A + LGAD+ V S + ++M A  KS DFI+
Sbjct: 204 GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGADEVVNSRNADEMAAHLKSFDFIL 262
Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNI 289
           +T +  H  D + +LLK  G   LVG P+    SP   N+
Sbjct: 263 NTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNL 302

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/275 (38%), Positives = 154/275 (56%), Gaps = 10/275 (3%)
Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
           G+A         P+ F+R AVG  DV I I + G+C++D+    ++  +  YP++PGHEI
Sbjct: 7   GFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEI 66
Query: 72  VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA--DGT 129
            GI+KEVG  V +FK+GD VGVG +VNSC+ C+ C +  E  C + V+T++ +D+  D  
Sbjct: 67  AGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNE 126
Query: 130 ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGL 189
              GGYS+ IVV E Y   +  +            GIT Y+P+   K+ + G  +GV G 
Sbjct: 127 PHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTK-GTKVGVAGF 185
Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII 249
           GGLG MAVK+  A G  V+V + +  KK++ALS +G   F   +D +Q K   + LDFII
Sbjct: 186 GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MGVKHFY--TDPKQCK---EELDFII 239
Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSP 284
            T    +    Y+ LL   G   LVG P  V+ +P
Sbjct: 240 STIPTHYDLKDYLKLLTYNGDLALVGLPP-VEVAP 273

>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl Alcohol Dehydrogenase From Saccharomyces Cerevisiae Length = 360

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/248 (35%), Positives = 136/248 (54%), Gaps = 6/248 (2%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVG-HNVSRFKVGDHVGVG 94
           D+ I I  CGVC +D+       G+ K PLV GHEIVG V ++G  + S  KVG  VGVG
Sbjct: 35  DIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVG 94
Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYX 154
             V SC +C+ C +  E +C + V T++    DG +++GGY++Y+ VHE +   I  +  
Sbjct: 95  AQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIP 154
Query: 155 XXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST 214
                     G+TVY+P++R+    PGK +G++GLGG+G M     KA G    V+S S+
Sbjct: 155 SHLAAPLLCGGLTVYSPLVRNGCG-PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 213
Query: 215 SKKEEALSLLGADKFVVS-SDLEQMKALGKSLDFIIDTASG--DHPFDAYMSLLKVAGVY 271
            K+E+A+  +GAD ++ +  + +  +    + D I+  AS   D  F+     +KV G  
Sbjct: 214 RKREDAMK-MGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRI 272
Query: 272 VLVGFPSK 279
           V +  P +
Sbjct: 273 VSISIPEQ 280

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 19/251 (7%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           +V + I  CGVC+ D+      HGD     K PL+PGHE VGIV+EVG  V+  KVGD V
Sbjct: 27  EVLVRIKACGVCHTDL---HAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV 83
Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
           G+    ++C  C+YC  G E  C        ++D       GGY+ Y      Y  KI +
Sbjct: 84  GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-------GGYAEYCRAAADYVVKIPD 136
Query: 152 DYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS 211
           +            G+T Y   ++    +PG+ + + G+GGLGH+AV++ KA GLNV  + 
Sbjct: 137 NLSFEEAAPIFCAGVTTYK-ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVD 195
Query: 212 TSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFI---IDTASGDHPFDAYMSLLKVA 268
               K E A   LGAD  V     +  K + + +  +   + TA     F +  + ++  
Sbjct: 196 IGDEKLELAKE-LGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG 254
Query: 269 GVYVLVGFPSK 279
           G  VLVG P +
Sbjct: 255 GACVLVGLPPE 265

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 121/251 (48%), Gaps = 19/251 (7%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           +V + I  CGVC+ D+      HGD     K PL+PGHE VGIV+EVG  V+  KVGD V
Sbjct: 27  EVLVRIKACGVCHTDL---HAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRV 83
Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
           G+    ++C  C+YC  G E  C        ++D       GGY+ Y      Y  KI +
Sbjct: 84  GIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-------GGYAEYCRAAADYVVKIPD 136
Query: 152 DYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS 211
           +            G+T Y   ++    +PG+ + + G+GG GH+AV++ KA GLNV  + 
Sbjct: 137 NLSFEEAAPIFCAGVTTYK-ALKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMGLNVVAVD 195
Query: 212 TSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFI---IDTASGDHPFDAYMSLLKVA 268
               K E A   LGAD  V     +  K + + +  +   + TA     F +  + ++  
Sbjct: 196 IGDEKLELAKE-LGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG 254
Query: 269 GVYVLVGFPSK 279
           G  VLVG P +
Sbjct: 255 GACVLVGLPPE 265

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 19/252 (7%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           G   V + I   GVC+ D+       GD       P +PGHE VG V  VG  V+R K G
Sbjct: 30  GPGQVLVKIEASGVCHTDL---HAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEG 86
Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D VG+     +C  CE+C  G E  C     T       G    GGY+ Y++    Y   
Sbjct: 87  DRVGIPWLYTACGCCEHCLTGWETLCESQQNT-------GYSVNGGYAEYVLADPNYVGI 139
Query: 149 IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
           +  +            G+TVY   ++    +PG+ + + G+GGLGH+AV++ +A GL+V 
Sbjct: 140 LPKNVEFAEIAPILCAGVTVYK-GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVA 198
Query: 209 VLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD---FIIDTASGDHPFDAYMSLL 265
            +    +K E A   LGA   V +   + ++A+ + +     ++ TA  +  F   + + 
Sbjct: 199 AIDIDDAKLELARK-LGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMA 257
Query: 266 KVAGVYVLVGFP 277
           +  G   LVG P
Sbjct: 258 RRGGTIALVGLP 269

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 112/252 (44%), Gaps = 19/252 (7%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           G   V + I   GVC+ D+       GD       P +PGHE VG V  VG  VSR K G
Sbjct: 26  GPGQVQVKIEASGVCHTDL---HAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEG 82
Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D VGV    ++C  CE+C  G E  C +   T       G    GGY  Y+V    Y   
Sbjct: 83  DRVGVPWLYSACGYCEHCLQGWETLCEKQQNT-------GYSVNGGYGEYVVADPNYVGL 135
Query: 149 IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
           + +             G+TVY   ++    +PG+ + + G+GGLGH+AV++ +A GL V 
Sbjct: 136 LPDKVGFVEIAPILCAGVTVYK-GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVA 194
Query: 209 VLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD---FIIDTASGDHPFDAYMSLL 265
            +    +K   A   LGA+  V + D +    L K +     ++ TA     F   + ++
Sbjct: 195 AVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQAIGMV 253
Query: 266 KVAGVYVLVGFP 277
           +  G   L G P
Sbjct: 254 RRGGTIALNGLP 265

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 16/268 (5%)
Query: 17  DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVK 76
           +P G         RA+  ++  + + +CGVC+ D+      +G+ K   V GHE +GIVK
Sbjct: 9   NPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDYGN-KAGTVLGHEGIGIVK 67
Query: 77  EVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYS 136
           E+G +VS  +VGD V V  +   C  CEYC  G E  C R V   NA    G    GG +
Sbjct: 68  EIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFC-REVK--NA----GYSVDGGMA 120
Query: 137 SYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMA 196
              +V   Y  K+ +             G+T Y  +    + +PG    + G GGLG++A
Sbjct: 121 EEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLA 179
Query: 197 VKFGK-AFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIID 250
           +++ K  FG  V  +  +  K   A   +GAD  + S D   ++++K +  G  +   I 
Sbjct: 180 IQYAKNVFGAKVIAVDINQDKLNLA-KKIGADVIINSGDVNPVDEIKKITGGLGVQSAIV 238
Query: 251 TASGDHPFDAYMSLLKVAGVYVLVGFPS 278
            A     F+  ++ LK  G  V V  P+
Sbjct: 239 CAVARIAFEQAVASLKPMGKMVAVALPN 266

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 21/254 (8%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           G   + + I   GVC+ D+       GD       P +PGHE VG V  VG  V   K G
Sbjct: 49  GPGQIQVAIQASGVCHTDL---HAAEGDWPVKPNPPFIPGHEGVGFVSAVGSGVKHVKEG 105
Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D VG+     +C  C +C  G E  C   + T       G    GG++ Y+V    +   
Sbjct: 106 DRVGIPWLYTACGHCRHCLGGWETLCEEQLNT-------GYSVNGGFAEYVVADPNFVGH 158
Query: 149 IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
           +  +            G+TVY   ++    +PG  + + G+GGLGHMAV++ +A GLNV 
Sbjct: 159 LPKNIDFNEIAPVLCAGVTVYK-GLKVTDTKPGDWVVISGIGGLGHMAVQYARAMGLNVA 217
Query: 209 VLSTSTSKKEEALSLLGADKFVVSSDLEQMKA-LGKSLD----FIIDTASGDHPFDAYMS 263
            +     K + A   LGA   V +  +    A + K  D     ++ TA     F+  + 
Sbjct: 218 AVDIDDRKLDLA-RRLGATVTVNAKTVADPAAYIRKETDGGAQGVLVTAVSPKAFEQALG 276
Query: 264 LLKVAGVYVLVGFP 277
           ++   G   L G P
Sbjct: 277 MVARGGTVSLNGLP 290

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 16/268 (5%)
Query: 17  DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVK 76
           +P G         RA+  ++  + + +CGVC+ D+       G+ K   V GHE +GIVK
Sbjct: 9   NPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVK 67
Query: 77  EVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYS 136
           E+G +VS  +VGD V V  +   C  CEYC  G E  C R V   NA    G    GG +
Sbjct: 68  EIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFC-REVK--NA----GYSVDGGMA 120
Query: 137 SYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMA 196
              +V   Y  K+ +             G+T Y  +    + +PG    + G GGLG++A
Sbjct: 121 EEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLA 179
Query: 197 VKFGK-AFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIID 250
           +++ K  FG  V  +  +  K   A   +GAD  + S D   ++++K +  G  +   I 
Sbjct: 180 IQYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITGGLGVQSAIV 238
Query: 251 TASGDHPFDAYMSLLKVAGVYVLVGFPS 278
            A     F+  ++ LK  G  V V  P+
Sbjct: 239 CAVARIAFEQAVASLKPMGKMVAVAVPN 266

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 115/259 (44%), Gaps = 24/259 (9%)
Query: 34  SDDVSITITHCGVCYADV-IWTRNKHGD----SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           ++++ I + + GVC+ D+  W    HGD     K PLV GHE  G+V  +G NV  +K+G
Sbjct: 30  ANELLINVKYSGVCHTDLHAW----HGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKIG 85
Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D+ G+     SC  CEYC  G E +C  +       D  G    G +  Y          
Sbjct: 86  DYAGIKWLNGSCMACEYCELGNESNCPHA-------DLSGYTHDGSFQQYATADAVQAAH 138
Query: 149 IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNV 207
           I               GITVY  +    +   G  + + G  GGLG +AV++ KA G  V
Sbjct: 139 IPQGTDLAQVAPILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAVQYAKAMGYRV 197
Query: 208 TVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLD----FIIDTASGDHPFDAYM 262
             +      KEE    +G + F+  + + + + A+ K+ D     +I+ +  +   +A  
Sbjct: 198 LGIDGGEG-KEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEAST 256
Query: 263 SLLKVAGVYVLVGFPSKVK 281
             ++  G  VLVG P+  K
Sbjct: 257 RYVRANGTTVLVGMPAGAK 275

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 116/257 (45%), Gaps = 27/257 (10%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD--------SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
            V I I   GVC++DV   + + G+         K P+  GHEI G ++EVG  V  +  
Sbjct: 27  QVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSK 86
Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV-HERYC 146
           GD V V  +     +C YC  G E  C    +    I+ DG      Y+ Y++V H +Y 
Sbjct: 87  GDLVAVNPWEGEG-NCYYCRIGEEHLCDSPRWL--GINYDGA-----YAEYVLVPHYKYL 138
Query: 147 YKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGL 205
           YK+               G+T Y  + +  ++ P K+L VIG  GGLG MA++  KA   
Sbjct: 139 YKL-RRLSAVEAAPLTCSGVTTYRAVRKASLD-PSKTLVVIGAGGGLGTMAIQIAKAVS- 195
Query: 206 NVTVLSTSTSKKE-EALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFD 259
             T++     ++  EA    GAD  + +S  + +  +     GK  D +ID  + +    
Sbjct: 196 GATIIGVDVREEALEAAKRAGADYVINASSQDPVSEIRRITQGKGADAVIDLNNSEKTLS 255
Query: 260 AYMSLLKVAGVYVLVGF 276
            Y  +L   G YV+VG 
Sbjct: 256 IYPYVLAKQGKYVMVGL 272

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 26/265 (9%)
Query: 34  SDDVSITITHCGVCYADVIWTRNKHGD-----SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
            D+V + + + G+C +DV +   +HG       K P+V GHE  G V +VG NV   K G
Sbjct: 28  EDEVLLQMAYVGICGSDVHYY--EHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKG 85
Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D V V   V  CR C++C +G    C     TF A   D     G  + Y V    +C+K
Sbjct: 86  DRVAVEPGV-PCRRCQFCKEGKYNLCPD--LTFCATPPD----DGNLARYYVHAADFCHK 138
Query: 149 IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
           + ++             + V+    R    Q G ++ VIG G +G ++V   KA+G  V 
Sbjct: 139 LPDNVSLEEGALLEPLSVGVHA--CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFV- 195
Query: 209 VLSTSTSKKEEALSLLGADKFVV--------SSDLEQMK-ALGKSLDFIIDTASGDHPFD 259
           V +  + ++ E     GAD  +V        SS +E+++ A+G   +  ID +  +    
Sbjct: 196 VCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCIT 255
Query: 260 AYMSLLKVAGVYVLVGFPSKVKFSP 284
             +++ +  G  +LVG  S++   P
Sbjct: 256 IGINITRTGGTLMLVGMGSQMVTVP 280

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 113/263 (42%), Gaps = 24/263 (9%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKY--PLVPGHEIVGIVKEVGHNVSRFKVGDH 90
           G  ++ + +T  G+C++D+           Y  PL  GHE VG V E+G  V+ F VGD 
Sbjct: 24  GPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDA 83
Query: 91  VGV-GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
           V V G +   C  C  C  G E +C R+      I   G  + G  + Y++V        
Sbjct: 84  VAVYGPW--GCGACHACARGRENYCTRAADL--GITPPGLGSPGSMAEYMIVDSARHLVP 139
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMR-HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVT 208
             D            G+T Y  + R   +  PG +  VIG+GGLGH+ ++  +A      
Sbjct: 140 IGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVS-AAR 198
Query: 209 VLSTSTSKKEEALSL-LGADKFVVSS--------DLEQMKALGKSLDFI-----IDTASG 254
           V++        AL+  +GAD  V S         +L   +      DF+     IDTA  
Sbjct: 199 VIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQ 258
Query: 255 DHPFDAYMSLLKV-AGVYVLVGF 276
               D ++S++ + AG +  VGF
Sbjct: 259 VVAVDGHISVVGIHAGAHAKVGF 281

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 35/272 (12%)
Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP---GHEIVGIVKEVGHNVSRFK 86
           R  G  DV + I   GVC+ D+   +    +   P +P   GHE VG ++EV   V   +
Sbjct: 37  RLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE 96
Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
            GD V +   V     C  C  G ++HC      F  ++ DG     G++ ++    R  
Sbjct: 97  KGDPVILHPAVTDG-TCLACRAGEDMHCEN--LEFPGLNIDG-----GFAEFMRTSHRSV 148
Query: 147 YKIANDYXXXXXXXXXX---XGITVYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKA 202
            K+  D               GIT Y  + +  +   PG  + ++G+GGLGH+AV+  K 
Sbjct: 149 IKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKV 208
Query: 203 FGLNVTVLSTSTSKKEEALSL---LGADKFVVSS--------DLEQMKALGKSLDFIIDT 251
                TV++     KEE L L   LGAD  V +         +L + + +  ++DF+   
Sbjct: 209 M-TPATVIALDV--KEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ 265
Query: 252 ASGDH-PFDAYMSLLKVAGVYVLVGFPSKVKF 282
           A+ D+ P+     LL   G  ++VG+  +++F
Sbjct: 266 ATVDYTPY-----LLGRMGRLIIVGYGGELRF 292

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 25/278 (8%)
Query: 10  CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGH 69
           C    A +P+  L           + +V I I +  +C+ D      K  +  +P + GH
Sbjct: 9   CKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGH 68
Query: 70  EIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCA-------------- 115
           E  GIV+ VG  V+  + GDHV +  Y   CR+C++C  G    C               
Sbjct: 69  EAAGIVESVGEGVTEVQAGDHV-IPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMND 127
Query: 116 -RSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMR 174
            +S ++ N       +    +S Y VVH+    KI                 T    +  
Sbjct: 128 RKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWN 187
Query: 175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD 234
               +PG ++ + GLG +G    +  K  G +  +     SKK E     G ++FV   D
Sbjct: 188 TAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKD 247
Query: 235 LEQMKALGKSLDFIIDTASG--DHPFDAY--MSLLKVA 268
            ++        + I+D   G  D+ F+    +S+++ A
Sbjct: 248 HDK-----PIQEVIVDLTDGGVDYSFECIGNVSVMRAA 280

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 108/256 (42%), Gaps = 25/256 (9%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD--------SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
            V I +   GVC++DV   + + G+         K P+  GHEI G ++EVG  V  +  
Sbjct: 27  QVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86
Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV-HERYC 146
           GD V V  +     +C YC  G E  C    +        G    G Y+ Y++V H +Y 
Sbjct: 87  GDLVAVNPWQGEG-NCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYM 138
Query: 147 YKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
           YK+               GIT Y  + +  ++     L V   GGLG MAV+  KA    
Sbjct: 139 YKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-G 196
Query: 207 VTVLSTSTSKKE-EALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDA 260
            T++     ++  EA    GAD  + +S  + +  +      K +D +ID  + +     
Sbjct: 197 ATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSV 256
Query: 261 YMSLLKVAGVYVLVGF 276
           Y   L   G YV+VG 
Sbjct: 257 YPKALAKQGKYVMVGL 272

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 106/280 (37%), Gaps = 30/280 (10%)
Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
           K  + W A  P   L           + +V I I    +C+ D     +K     +P++ 
Sbjct: 12  KAAIAWEAGKP---LCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIV 68
Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDAD 127
           GHE  GIV+ +G  V+  K GD V +  Y   CR C++C   L   C + +    +  +D
Sbjct: 69  GHEAAGIVESIGPGVTNVKPGDKV-IPLYAPLCRKCKFCLSPLTNLCGK-ISNLKSPASD 126
Query: 128 GTITK-------------------GGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITV 168
             + +                     +S Y VV +    KI +D              T 
Sbjct: 127 QQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTG 186
Query: 169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK 228
           Y   + +    PG +  V GLGG+G  AV   KA G +  +     S+K      LGA  
Sbjct: 187 YGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATD 246
Query: 229 FVVSSDL-----EQMKALGK-SLDFIIDTASGDHPFDAYM 262
            +   DL     E +  L K  +DF +D A G     A +
Sbjct: 247 CLNPRDLHKPIQEVIIELTKGGVDFALDCAGGSETMKAAL 286

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 33/277 (11%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G  +V I +    +C  D+ I+  N+   S  K P + GHE+ G V E+G  V   +VGD
Sbjct: 27  GPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGIEVGD 86
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK- 148
           +V V T++  C  C  C  G + H  ++   F  +D DG      ++ Y VV  +  +K 
Sbjct: 87  YVSVETHI-VCGKCYACRRG-QYHVCQNTKIF-GVDTDGV-----FAEYAVVPAQNIWKN 138
Query: 149 ---IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL 205
              I  +Y              +  P+        GKS+ + G G LG + +   KA G 
Sbjct: 139 PKSIPPEYATLQEPLGNAVDTVLAGPIS-------GKSVLITGAGPLGLLGIAVAKASGA 191
Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDA 260
              ++S  +  + E    +GAD  +   + + +K +     G  +D  ++ +      + 
Sbjct: 192 YPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVXDITDGNGVDVFLEFSGAPKALEQ 251
Query: 261 YMSLLKVAGVYVLVG-FPSKVKFSPASLNIGNAPLFR 296
            +  +  AG   L+G +P KV     +++  N  +F+
Sbjct: 252 GLQAVTPAGRVSLLGLYPGKV-----TIDFNNLIIFK 283

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 33/277 (11%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G  +V I +    +C  D+ I+  N+   S  K P + GHE+ G V E+G  V   +VGD
Sbjct: 28  GPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXGHEVAGEVVEIGPGVEGIEVGD 87
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK- 148
           +V V T++  C  C  C  G + H  ++   F  +D DG      ++ Y VV  +  +K 
Sbjct: 88  YVSVETHI-VCGKCYACRRG-QYHVCQNTKIF-GVDTDGV-----FAEYAVVPAQNIWKN 139
Query: 149 ---IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL 205
              I  +Y              +  P+        GKS+ + G G LG + +   KA G 
Sbjct: 140 PKSIPPEYATLQEPLGNAVDTVLAGPIS-------GKSVLITGAGPLGLLGIAVAKASGA 192
Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDA 260
              ++S  +  + E    +GAD  +   + + +K +     G  +D  ++ +      + 
Sbjct: 193 YPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVXDITDGNGVDVFLEFSGAPKALEQ 252
Query: 261 YMSLLKVAGVYVLVG-FPSKVKFSPASLNIGNAPLFR 296
            +  +  AG   L+G +P KV     +++  N  +F+
Sbjct: 253 GLQAVTPAGRVSLLGLYPGKV-----TIDFNNLIIFK 284

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 107/256 (41%), Gaps = 25/256 (9%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD--------SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
            V I +   GVC++DV   + + G+         K P+  GHEI G ++EVG  V  +  
Sbjct: 27  QVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86
Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV-HERYC 146
           GD V V  +     +C YC  G E  C    +        G    G Y+ Y++V H +Y 
Sbjct: 87  GDLVAVNPWQGEG-NCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYM 138
Query: 147 YKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
           YK+               GIT Y  + +  ++     L V   GGLG MAV+  KA    
Sbjct: 139 YKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-G 196
Query: 207 VTVLSTSTSKKE-EALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDA 260
            T++     ++  EA    GAD  + +S  + +  +      K +D +ID    +     
Sbjct: 197 ATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNYSEKTLSV 256
Query: 261 YMSLLKVAGVYVLVGF 276
           Y   L   G YV+VG 
Sbjct: 257 YPKALAKQGKYVMVGL 272

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 31/286 (10%)
Query: 23  SPYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVG 79
            P+S     V    + +V I I   G+C  D    +     SK+P++ GHE  GIV+ +G
Sbjct: 19  QPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM-VSKFPVIVGHEATGIVESIG 77
Query: 80  HNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT---------- 129
             V+  K GD V +  ++  CR+C  C +     C RS  T   + ADGT          
Sbjct: 78  EGVTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPV 136
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    ++ Y VV E    KI +               T Y   ++    +PG +  V
Sbjct: 137 HHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVV 196
Query: 187 IGLGGLGHMAVKFGKAFGLNVTV-LSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL 245
            GLGG+G   +   K+ G +  + +  +  K E+A++ +GA + +   D    K + + L
Sbjct: 197 FGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-VGATECISPKD--STKPISEVL 253
Query: 246 DFIIDTASG---------DHPFDAYMSLLKVAGVYVLVGFPSKVKF 282
             +     G         +   DA  S     G  V+VG P   K 
Sbjct: 254 SEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKM 299

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 31/286 (10%)
Query: 23  SPYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVG 79
            P+S     V    + +V I I   G+C  D    +     SK+P++ GHE  GIV+ +G
Sbjct: 19  QPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM-VSKFPVIVGHEATGIVESIG 77
Query: 80  HNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT---------- 129
             V+  K GD V +  ++  CR+C  C +     C RS  T   + ADGT          
Sbjct: 78  EGVTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPV 136
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    ++ Y VV E    KI +               T Y   ++    +PG +  V
Sbjct: 137 HHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVV 196
Query: 187 IGLGGLGHMAVKFGKAFGLNVTV-LSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL 245
            GLGG+G   +   K+ G +  + +  +  K E+A++ +GA + +   D    K + + L
Sbjct: 197 FGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-VGATECISPKD--STKPISEVL 253
Query: 246 DFIIDTASG---------DHPFDAYMSLLKVAGVYVLVGFPSKVKF 282
             +     G         +   DA  S     G  V+VG P   K 
Sbjct: 254 SEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKM 299

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 111/261 (42%), Gaps = 32/261 (12%)
Query: 35  DDVSITITHCGVCYADV-IW--TRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           ++V I I   GVC  D+ +W     K G  + P++ GHE  G + EVG  +++ K GD+V
Sbjct: 29  EEVLIRIGGAGVCRTDLRVWKGVEAKQG-FRLPIILGHENAGTIVEVGE-LAKVKKGDNV 86
Query: 92  GV-GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE-RYCYKI 149
            V  T+ +    C YC +G    C   +         G  T GG+S Y++V   R+  K+
Sbjct: 87  VVYATWGDLT--CRYCREGKFNICKNQIIP-------GQTTNGGFSEYMLVKSSRWLVKL 137
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMR-----HKMNQPGKSLGVIGLGGLGHMAVKFGKAFG 204
            N             G T    + +      K  +P   + V G+GGL    ++  KA  
Sbjct: 138 -NSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEP--VVIVNGIGGLAVYTIQILKALM 194
Query: 205 LNVTVLSTSTSKKEEALSL-LGADKFVVSSDLEQM-----KALGKSLDFIIDTASGDHPF 258
            N+T++  S SKK    +L LGAD      D E +       LG S+   ID    +   
Sbjct: 195 KNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASI--AIDLVGTEETT 252
Query: 259 DAYMSLLKVAGVYVLVGFPSK 279
                LL   G  +LVG   K
Sbjct: 253 YNLGKLLAQEGAIILVGMEGK 273

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 107/256 (41%), Gaps = 25/256 (9%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD--------SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
            V I +   GVC++DV   + + G+         K P+  GHEI G ++EVG  V  +  
Sbjct: 27  QVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86
Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV-HERYC 146
           GD V V   +    +C YC  G E  C    +        G    G Y+ Y++V H +Y 
Sbjct: 87  GDLVAVNP-LQGEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYM 138
Query: 147 YKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
           YK+               GIT Y  + +  ++     L V   GGLG MAV+  KA    
Sbjct: 139 YKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-G 196
Query: 207 VTVLSTSTSKKE-EALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDA 260
            T++     ++  EA    GAD  + +S  + +  +      K +D +ID    +     
Sbjct: 197 ATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNYSEKTLSV 256
Query: 261 YMSLLKVAGVYVLVGF 276
           Y   L   G YV+VG 
Sbjct: 257 YPKALAKQGKYVMVGL 272

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 19/258 (7%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNK--HGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G  ++ + +    +C  D+ IW  +    G  + PLV GHE  G+V+ VG  V R +VGD
Sbjct: 24  GPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGD 83
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
           HV + +++  C  C  C  G    C  +      +D D     GG++ Y+VV     +  
Sbjct: 84  HVSLESHI-VCHACPACRTGNYHVCLNT--QILGVDRD-----GGFAEYVVVPAENAWVN 135
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV 209
             D            G  V+T      ++  GKS+ + G G +G MA    +A G    +
Sbjct: 136 PKDLPFEVAAILEPFGNAVHTVYAGSGVS--GKSVLITGAGPIGLMAAMVVRASGAG-PI 192
Query: 210 LSTSTSKKEEALSLLGADKFV--VSSDLEQM--KALGKSLDFIIDTASGDHPFDAYMSLL 265
           L +  +    A +   AD+ V  +  DL ++  +  G  ++ +++ +  +      +  L
Sbjct: 193 LVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMAL 252
Query: 266 KVAGVYVLVGFPS-KVKF 282
              G   ++G PS  ++F
Sbjct: 253 IPGGEARILGIPSDPIRF 270

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 16/243 (6%)
Query: 10  CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGH 69
           C    A +P+  L           + +V + + +  +C+ D      K  +  +P V GH
Sbjct: 27  CKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDPEGLFPCVLGH 86
Query: 70  EIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCA-------------- 115
           E  GIV+ VG  V+  + GDHV +  Y   CR+C++C  G    C               
Sbjct: 87  EAAGIVESVGEGVTEVQPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMND 145
Query: 116 -RSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMR 174
            +S ++ N       +    +S Y VVH+    KI                 T    +  
Sbjct: 146 RKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVPTGLGAVWN 205
Query: 175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD 234
               +PG  + V GLG +G    +  KA G +  +     SKK +     G  +F+   +
Sbjct: 206 TAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFINPKE 265
Query: 235 LEQ 237
            EQ
Sbjct: 266 HEQ 268

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 18/225 (8%)
Query: 34  SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGV 93
            D+V + I   G+C +D+     K+G   YP+  GHE  G +  VG  V     GD V  
Sbjct: 25  QDEVRVKIASSGLCGSDLPRI-FKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVAC 83
Query: 94  GTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDY 153
              +  C  C  C  G    CA+        D  G+   GG++ YIVV  +  + +  D 
Sbjct: 84  VPLL-PCFTCPECLKGFYSQCAK-------YDFIGSRRDGGFAEYIVVKRKNVFALPTDM 135
Query: 154 XXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLST 212
                       ITV             K++ +IG G +G +A++   A G  +VT +  
Sbjct: 136 PIEDGAFIEP--ITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193
Query: 213 STSKKEEALSLLGADKFVVSSDLE--QMKALGKSLDF---IIDTA 252
           S+ K   A S  GA +   SS++   QM+++ + L F   I++TA
Sbjct: 194 SSEKLALAKS-FGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA 237

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 113/291 (38%), Gaps = 27/291 (9%)
Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVI-WTRNKHGDSKYPLV 66
           K  + W A  P   L           ++++ I I   GVC+ D+      KH D  +P+V
Sbjct: 10  KAAVAWEANKP---LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVV 65
Query: 67  PGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR---------- 116
            GHE  GIV+ VG  V+ F+ G+ V +  +++ C +C +C       C +          
Sbjct: 66  LGHEGAGIVESVGPGVTEFQPGEKV-IPLFISQCGECRFCQSPKTNQCVKGWANESPDVM 124
Query: 117 ----SVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPM 172
               + +T         +    +S Y VV++    KI                 T +   
Sbjct: 125 SPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAA 184
Query: 173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS 232
           +     +PG +  V GLG +G  AV    + G    +       K E   + GA  FV  
Sbjct: 185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP 244
Query: 233 SD----LEQM--KALGKSLDFIIDTASGDHPF-DAYMSLLKVAGVYVLVGF 276
           +D    + Q+  K     +DF ++         +A  S LK  GV VLVG+
Sbjct: 245 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW 295

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 23/269 (8%)
Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           R    D+V + +   G+C+ D+I  R++      P V GHE  GI++ +G NV+  +VGD
Sbjct: 27  RQPQGDEVLVKVVATGMCHTDLI-VRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGD 85
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSV-YTFNAIDADGT---------------ITKG 133
           HV V +Y   C  C  CN G   +C+      F+  D++G                  + 
Sbjct: 86  HV-VLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQS 143
Query: 134 GYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLG 193
            +++Y +  E    K+  D              T     +      P  S    G G +G
Sbjct: 144 SFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVG 203
Query: 194 HMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD----FII 249
             A+   K  G ++ +       + E    LGA   + S   + + A+ +  D    F +
Sbjct: 204 LSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFAL 263
Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFPS 278
           ++          +  L + G   +VG P 
Sbjct: 264 ESTGSPEILKQGVDALGILGKIAVVGAPQ 292

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 22/252 (8%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           +V + +   G+C +D    R  +  +KYP V GHE  G++  VG  V   +VG+ V V  
Sbjct: 46  EVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDP 105
Query: 96  YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI----AN 151
            V SC  C  C+ G    C  +      + AD     GG+S Y VV  +  +KI    A+
Sbjct: 106 VV-SCGHCYPCSIGKPNVC--TTLAVLGVHAD-----GGFSEYAVVPAKNAWKIPEAVAD 157
Query: 152 DYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGK-AFGLNVTVL 210
            Y             T+   +  H       ++ V G G +G   V+  K  + +   ++
Sbjct: 158 QYAVMIEP------FTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVYNVKNVIV 211
Query: 211 STSTSKKEEALSLLGADKFVVSSDL---EQMKALGKSLDFIIDTASGDHPFDAYMSLLKV 267
           +    ++ E     GAD  + +S     E     G     IID A         ++L   
Sbjct: 212 ADRIDERLEKAKESGADWAINNSQTPLGESFAEKGIKPTLIIDAACHPSILKEAVTLASP 271
Query: 268 AGVYVLVGFPSK 279
           A   VL+GF S+
Sbjct: 272 AARIVLMGFSSE 283

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 23/255 (9%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD--------SKYPLVPGHEIVGIVKEVGHNVSRFKV 87
            V I +   GVC++DV   + + G+         K P+  GHEI G ++EVG  V  +  
Sbjct: 27  QVLIKVEAAGVCHSDVHXRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSK 86
Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV-HERYC 146
           GD V V  +     +C YC  G E  C    +        G    G Y+ Y++V H +Y 
Sbjct: 87  GDLVAVNPWQGEG-NCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYX 138
Query: 147 YKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN 206
           YK+               GIT Y  + +  ++     L V   GGLG  AV+  KA    
Sbjct: 139 YKL-RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAVQIAKAVSGA 197
Query: 207 VTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHPFDAY 261
             +      +  EA    GAD  + +S  + +  +      K +D +ID  + +     Y
Sbjct: 198 TIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVY 257
Query: 262 MSLLKVAGVYVLVGF 276
              L   G YV VG 
Sbjct: 258 PKALAKQGKYVXVGL 272

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 18/228 (7%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G  D+ +      + Y D +      G D  +P VP  +  G+V+ VG +V+RF+ GD V
Sbjct: 52  GEHDIIVRTLAVSLNYRDKLVLETGXGLDLAFPFVPASDXSGVVEAVGKSVTRFRPGDRV 111
Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
            + T+           DGL     R+     A +  G    G  S Y+V+ E +      
Sbjct: 112 -ISTFAPGWL------DGLRPGTGRT----PAYETLGGAHPGVLSEYVVLPEGWFVAAPK 160
Query: 152 DYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS 211
                        G+T +  ++     + G  + V G GG+    ++  KA G  V V S
Sbjct: 161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTS 220
Query: 212 TSTSKKEEALSLLGADKFV--VSSD-LEQMKAL--GKSLDFIIDTASG 254
           +S  K + A + LGAD  +  +  D +E++ AL   +  D I++ A G
Sbjct: 221 SSREKLDRAFA-LGADHGINRLEEDWVERVYALTGDRGADHILEIAGG 267

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 21/225 (9%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G  +V I +    +C  D+ I+  N+   S  K P + GHE+ G V EVG  V   +VGD
Sbjct: 28  GPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGD 87
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
           ++ V T++  C  C  C      H  ++   F  +D DG      ++ Y +V  +  +K 
Sbjct: 88  YISVETHI-VCGKCYACKHN-RYHVCQNTKIF-GVDMDGV-----FAHYAIVPAKNAWKN 139
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV 209
             D            G  V T +        G+S  + G G LG + +   KA G    +
Sbjct: 140 PKDMPPEYAALQEPLGNAVDTVLAGPIA---GRSTLITGAGPLGLLGIAVAKASGAYPVI 196
Query: 210 LSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG 254
           +S  +  + +    +GAD  V   + + +K       F++D   G
Sbjct: 197 VSEPSEFRRKLAKKVGADYVVNPFEEDPVK-------FVMDITDG 234

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 25/264 (9%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
           G DD+ + +  CG+C  D       HG+  S  P+  GHE  GIV E G  V     G  
Sbjct: 46  GPDDLLVKVEACGICGTD---RHLLHGEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGAR 102
Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
           +  G    SC  C  C  G  V+  R+      + A G    GG++ Y++V  +  ++I 
Sbjct: 103 I-TGDPNISCGRCPQCQAG-RVNLCRN------LRAIGIHRDGGFAEYVLVPRKQAFEIP 154
Query: 151 NDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVL 210
                            ++   +     + G ++ ++G G +G + V+  +  G    +L
Sbjct: 155 LTLDPVHGAFCEPLACCLHG--VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVIL 212
Query: 211 STSTSKKEEALSLLGADKFVVSSDLEQMKALGKS-------LDFIIDTASGDHPFDAYMS 263
           ST  + K      +GA   V  S  + ++A+          +D +I+ A           
Sbjct: 213 STRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTR 272
Query: 264 LLKVAGVYVLVG-FPS--KVKFSP 284
           L K  G  V++G  P   KV+  P
Sbjct: 273 LAKAGGTVVILGVLPQGEKVEIEP 296

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 47/249 (18%)
Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           SK P V G + +G+V+ VG+ V+ F  GD V    Y +   D                  
Sbjct: 57  SKAPRVLGFDAIGVVESVGNEVTMFNQGDIV----YYSGSPD------------------ 94
Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMM------R 174
                       G  + Y +++ER   K   +            GIT Y  +       R
Sbjct: 95  ----------QNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISR 144
Query: 175 HKMNQPGKSLGVI-GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--V 231
           ++    GK+L +I G GG+G +A +  KA+GL V + + S ++  E    +GAD  +   
Sbjct: 145 NRNENEGKTLLIINGAGGVGSIATQIAKAYGLRV-ITTASRNETIEWTKKMGADIVLNHK 203
Query: 232 SSDLEQMKALGKSL-DFIIDTASGDHPFDAYMSLLKVAG-VYVLVGFPSKVKFS---PAS 286
            S L Q K  G  L D++  T + D  +D  + L+K  G +  +V F +    +   P S
Sbjct: 204 ESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNALKPKS 263
Query: 287 LNIGNAPLF 295
           L+  +  +F
Sbjct: 264 LSFSHEFMF 272

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 19/256 (7%)
Query: 37  VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVG-----HNVSRFKVGDHV 91
           + + I   GVC +DV   R +      P++ GHE  G V EV       N    K GD +
Sbjct: 45  ILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLI 104
Query: 92  GVGTYVNSCRDCEYCNDGLEVHCA--RSVYTFNAIDADGTITKGGYSSYIVVH-ERYCYK 148
            V     +C +C +C    E +    R VY  N   ++    +G YSS+IV+  E    K
Sbjct: 105 -VWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLK 163
Query: 149 IANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NV 207
           ++              G T Y     +  +  GK++ + G G LG   V   ++ G  NV
Sbjct: 164 VSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENV 223
Query: 208 TVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL-----GKSLDFIIDTASGDHPFD 259
            V++ S ++ + A   +GAD  +    +S  E+ KA+     G+  DFI++         
Sbjct: 224 IVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALL 282
Query: 260 AYMSLLKVAGVYVLVG 275
               LL+  G Y + G
Sbjct: 283 EGSELLRRGGFYSVAG 298

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 21/208 (10%)
Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
           K  + W A  P   LS          + +V I I    VC+ D         +  +P++ 
Sbjct: 8   KAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVIL 64
Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVYTFNAIDA 126
           GHE  GIV+ VG  V++ K GD V +  Y+  C +C++C +     C +  V     +  
Sbjct: 65  GHEGAGIVESVGEGVTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMP 123
Query: 127 DGT---ITKGG----------YSSYIVVHERYCYKIANDYXXXXXXXXXXXGI-TVYTPM 172
           DGT     KG           +S Y VV +    KI +             GI T Y   
Sbjct: 124 DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI-DPLAPLDKVCLLGCGISTGYGAA 182
Query: 173 MRHKMNQPGKSLGVIGLGGLGHMAVKFG 200
           +     +PG    V GLGG+G +AV  G
Sbjct: 183 VNTAKLEPGSVCAVFGLGGVG-LAVIMG 209

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 21/208 (10%)
Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
           K  + W A  P   LS          + +V I I    VC+ D         +  +P++ 
Sbjct: 9   KAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVIL 65
Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVYTFNAIDA 126
           GHE  GIV+ VG  V++ K GD V +  Y+  C +C++C +     C +  V     +  
Sbjct: 66  GHEGAGIVESVGEGVTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMP 124
Query: 127 DGT---ITKGG----------YSSYIVVHERYCYKIANDYXXXXXXXXXXXGI-TVYTPM 172
           DGT     KG           +S Y VV +    KI +             GI T Y   
Sbjct: 125 DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI-DPLAPLDKVCLLGCGISTGYGAA 183
Query: 173 MRHKMNQPGKSLGVIGLGGLGHMAVKFG 200
           +     +PG    V GLGG+G +AV  G
Sbjct: 184 VNTAKLEPGSVCAVFGLGGVG-LAVIMG 210

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 84/208 (40%), Gaps = 21/208 (10%)
Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
           K  + W A  P   LS          + +V I I    VC+ D         +  +P++ 
Sbjct: 9   KAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVIL 65
Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVYTFNAIDA 126
           GHE  GIV+ VG  V++ K GD V +  Y+  C +C++C +     C +  V     +  
Sbjct: 66  GHEGAGIVESVGEGVTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMP 124
Query: 127 DGT---ITKGG----------YSSYIVVHERYCYKIANDYXXXXXXXXXXXGI-TVYTPM 172
           DGT     KG           +S Y VV +    KI +             GI T Y   
Sbjct: 125 DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI-DPLAPLDKVCLLGCGISTGYGAA 183
Query: 173 MRHKMNQPGKSLGVIGLGGLGHMAVKFG 200
           +     +PG    V GLGG+G +AV  G
Sbjct: 184 VNTAKLEPGSVCAVFGLGGVG-LAVIMG 210

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 111/266 (41%), Gaps = 27/266 (10%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G ++V + +   G+C +DV  W   + G+   K P+V GHE  G V++VG +V   K GD
Sbjct: 30  GPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGD 89
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
            V +        D E+C  G   + + S++       DG + +     +   +  +CYK+
Sbjct: 90  RVAIEPGAPREND-EFCKMG-RYNLSPSIFFCATPPDDGNLCR-----FYKHNAAFCYKL 142
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLG----VIGLGGLGHMAVKFGKAFGL 205
            ++             + +      H   + G +LG    V G G +G + +   KA G 
Sbjct: 143 PDNVTFEEGALIEPLSVGI------HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 196
Query: 206 NVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKA------LGKSLDFIIDTASGDHPF 258
              V++  ++ +      +GAD  + +S +  Q  A      LG   +  I+    +   
Sbjct: 197 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASI 256
Query: 259 DAYMSLLKVAGVYVLVGFPSKVKFSP 284
            A +   +  G  VLVG  S++   P
Sbjct: 257 QAGIYATRSGGTLVLVGLGSEMTTVP 282

>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 36  DVSITITHCGVCYADVIWTRNKH-------GDSKYPLVPGHEIVGIVKEVGHNV------ 82
           ++ I +  CG+C +DV   +          G + +P+  GHE  G+V E G         
Sbjct: 57  EIIIKVKACGICGSDVHXAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTN 116
Query: 83  SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVH 142
            RF++G+ V     +  C  C  C +G   HC         ++  G    G ++ Y+ V 
Sbjct: 117 KRFEIGEPVCAEEXL-WCGHCRPCAEGFPNHC-------ENLNELGFNVDGAFAEYVKVD 168
Query: 143 ERYCYKIAN-------DYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
            +Y + +         D             +     ++R    +PG ++ ++G G +G  
Sbjct: 169 AKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLA 228
Query: 196 AVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV 230
           AV   K  G +  +LS  +  +      LGAD  +
Sbjct: 229 AVAILKHAGASKVILSEPSEVRRNLAKELGADHVI 263

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 39/243 (16%)
Query: 36  DVSITITHCGVCYADVIWTR-NKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           ++ I +  CG+ + D++  + N     K PLVPG E  GIV+ +G +V  +++GD V   
Sbjct: 32  ELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVM-- 89
Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYX 154
            +VN                      +NA           ++  +     + YKI +D  
Sbjct: 90  AFVN----------------------YNA-----------WAEVVCTPVEFVYKIPDDMS 116
Query: 155 XXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST 214
                      +T Y  +      + G S+ V   GG    AV    +   NVTV  T++
Sbjct: 117 FSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS 176
Query: 215 SKKEEALSLLGADKFVVSSD-LEQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYV 272
           + K EA+       F  ++D ++++K +  + +D ++D   GD+     +SLLK  G Y+
Sbjct: 177 TFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKG-LSLLKPLGTYI 235
Query: 273 LVG 275
           L G
Sbjct: 236 LYG 238

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 119/299 (39%), Gaps = 30/299 (10%)
Query: 5   TASKD--CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSK 62
           TA KD  C    A +P   LS  +       + +V I I   G+C +D    +     SK
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSK 61
Query: 63  YPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR------ 116
           +P++ GHE VG+V+ +G  V+  K GD V +  +V  C  C  C       C +      
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKV-IPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120
Query: 117 --------SVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGI-T 167
                   S +T         +    ++ Y VV +    KI  D            G  T
Sbjct: 121 TGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKI--DPKAPLESCLIGCGFAT 178
Query: 168 VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV-LSTSTSKKEEALSLLGA 226
            Y   +      PG +  V GLGG+G  A+   KA G +  + + T   K  +A+  LGA
Sbjct: 179 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LGA 237
Query: 227 DKFVVSSDLEQ------MKALGKSLDFIIDTASG-DHPFDAYMSLLKVAGVYVLVGFPS 278
            + +   D ++       +     +D+ ++ A   +   +A  S    +GV V++G  S
Sbjct: 238 TECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLAS 296

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 108/300 (36%), Gaps = 34/300 (11%)
Query: 21  VLSPYSFNRRAVGSD---DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKE 77
           V  P+S     V      +V I +   G+C+ D     + +  +  P++ GHE  GIV+ 
Sbjct: 17  VKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTD-DHVVSGNLVTPLPVILGHEAAGIVES 75
Query: 78  VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT------- 129
           VG  V+  K GD V +  +   C  C  C +    +C ++ +        DGT       
Sbjct: 76  VGEGVTTVKPGDKV-IPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRG 134
Query: 130 ------ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKS 183
                 +    +S Y VV E    KI                 T Y   +      PG +
Sbjct: 135 KPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGST 194
Query: 184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------L 235
             V GLGG+G  AV   KA G    +       K      LGA + +   D        L
Sbjct: 195 CAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 254
Query: 236 EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
           ++M   G    F +     D    + +   +  G  V+VG P      PAS N+   P+ 
Sbjct: 255 KEMTDGGVDFSFEV-IGRLDTMMASLLCCHEACGTSVIVGVP------PASQNLSINPML 307

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 21/208 (10%)
Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
           K  + W A  P   LS          + +V I I    VC+ D         +  +P++ 
Sbjct: 8   KAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVIL 64
Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR-SVYTFNAIDA 126
           GH   GIV+ VG  V++ K GD V +  Y+  C +C++C +     C +  V     +  
Sbjct: 65  GHLGAGIVESVGEGVTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMP 123
Query: 127 DGT---ITKGG----------YSSYIVVHERYCYKIANDYXXXXXXXXXXXGI-TVYTPM 172
           DGT     KG           +S Y VV +    KI +             GI T Y   
Sbjct: 124 DGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI-DPLAPLDKVCLLGCGISTGYGAA 182
Query: 173 MRHKMNQPGKSLGVIGLGGLGHMAVKFG 200
           +     +PG    V GLGG+G +AV  G
Sbjct: 183 VNTAKLEPGSVCAVFGLGGVG-LAVIMG 209

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 27/266 (10%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G ++V +     G+C +DV  W   + G+   K P V GHE  G V++VG +V   K GD
Sbjct: 30  GPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHEASGTVEKVGSSVKHLKPGD 89
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
            V +        D E+C  G   + + S++       DG + +     +   +  +CYK+
Sbjct: 90  RVAIEPGAPREND-EFCKXG-RYNLSPSIFFCATPPDDGNLCR-----FYKHNAAFCYKL 142
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLG----VIGLGGLGHMAVKFGKAFGL 205
            ++             + +      H   + G +LG    V G G +G + +   KA G 
Sbjct: 143 PDNVTFEEGALIEPLSVGI------HACRRGGVTLGHKVLVCGAGPIGXVTLLVAKAXGA 196
Query: 206 NVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKA------LGKSLDFIIDTASGDHPF 258
              V++  ++ +      +GAD  + +S +  Q  A      LG   +  I+    +   
Sbjct: 197 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASI 256
Query: 259 DAYMSLLKVAGVYVLVGFPSKVKFSP 284
            A +   +  G  VLVG  S+    P
Sbjct: 257 QAGIYATRSGGTLVLVGLGSEXTTVP 282

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 86/228 (37%), Gaps = 36/228 (15%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           +V I +    VC+ D+  T  K   + +P+V GHE  GIV+ VG  V+ FK GD V +  
Sbjct: 35  EVRIQVIATCVCHTDINATDPKK-KALFPVVLGHECAGIVESVGPGVTNFKPGDKV-IPF 92
Query: 96  YVNSCRDCEYCNDGLEVHC--------------------------ARSVYTFNAIDADGT 129
           +   C+ C+ C   L   C                           RS+Y F  + +   
Sbjct: 93  FAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSS--- 149
Query: 130 ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGL 189
                +S Y VV E    ++ ++              + Y   +      PG +  V GL
Sbjct: 150 -----FSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL 204
Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ 237
           G +G  A+   K  G +  +      +K      LGA   +   +L++
Sbjct: 205 GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDK 252

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 107/300 (35%), Gaps = 34/300 (11%)
Query: 21  VLSPYSFNRRAVGSD---DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKE 77
           V  P+S     V      +V I +   G+C  D     + +  +  P++ GHE  GIV+ 
Sbjct: 17  VKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTPLPVILGHEAAGIVES 75
Query: 78  VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT------- 129
           VG  V+  K GD V +  +   C  C  C +    +C ++ +        DGT       
Sbjct: 76  VGEGVTTVKPGDKV-IPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRG 134
Query: 130 ------ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKS 183
                 +    +S Y VV E    KI                 T Y   +      PG +
Sbjct: 135 KPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGST 194
Query: 184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------L 235
             V GLGG+G  AV   KA G    +       K      LGA + +   D        L
Sbjct: 195 CAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 254
Query: 236 EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
           ++M   G    F +     D    + +   +  G  V+VG P      PAS N+   P+ 
Sbjct: 255 KEMTDGGVDFSFEV-IGRLDTMMASLLCCHEACGTSVIVGVP------PASQNLSINPML 307

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 107/300 (35%), Gaps = 34/300 (11%)
Query: 21  VLSPYSFNRRAVGSD---DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKE 77
           V  P+S     V      +V I +   G+C  D     + +  +  P++ GHE  GIV+ 
Sbjct: 17  VKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTPLPVILGHEAAGIVES 75
Query: 78  VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT------- 129
           VG  V+  K GD V +  +   C  C  C +    +C ++ +        DGT       
Sbjct: 76  VGEGVTTVKPGDKV-IPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRG 134
Query: 130 ------ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKS 183
                 +    +S Y VV E    KI                 T Y   +      PG +
Sbjct: 135 KPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGST 194
Query: 184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------L 235
             V GLGG+G  AV   KA G    +       K      LGA + +   D        L
Sbjct: 195 CAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 254
Query: 236 EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
           ++M   G    F +     D    + +   +  G  V+VG P      PAS N+   P+ 
Sbjct: 255 KEMTDGGVDFSFEV-IGRLDTMMASLLCCHEACGTSVIVGVP------PASQNLSINPML 307

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 18/226 (7%)
Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPL--VPGHEIVGIVKEVGHNVSRFKVGDH 90
           G  +V + +    + + DV W R      K PL  V G +  G+V  VG  V  F  GD 
Sbjct: 26  GPKEVRVRLKAAALNHLDV-WVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDE 84
Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
           V +   + SC  CE C  G +  C R  Y        GT     Y+ Y+V+ E       
Sbjct: 85  VVINPGL-SCGRCERCLAGEDNLCPR--YQILGEHRHGT-----YAEYVVLPEANLAPKP 136
Query: 151 NDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTV 209
            +             +T +  ++     +PG  + V+  G G+   A++  K FG  V  
Sbjct: 137 KNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIA 196
Query: 210 LSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIID 250
            + S  K   A + LGAD+ V  +  +  K +     GK  D ++D
Sbjct: 197 TAGSEDKLRRAKA-LGADETVNYTHPDWPKEVRRLTGGKGADKVVD 241

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 107/300 (35%), Gaps = 34/300 (11%)
Query: 21  VLSPYSFNRRAVGSD---DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKE 77
           V  P+S     V      +V I +   G+C  D     + +  +  P++ GHE  GIV+ 
Sbjct: 17  VKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTD-DHVVSGNLVTPLPVILGHEAAGIVES 75
Query: 78  VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT------- 129
           VG  V+  K GD V +  +   C  C  C +    +C ++ +        DGT       
Sbjct: 76  VGEGVTTVKPGDKV-IPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRG 134
Query: 130 ------ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKS 183
                 +    +S Y VV E    KI                 T Y   +      PG +
Sbjct: 135 KPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGST 194
Query: 184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------L 235
             V GLGG+G  AV   KA G    +       K      LGA + +   D        L
Sbjct: 195 CAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 254
Query: 236 EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
           ++M   G    F +     D    + +   +  G  V+VG P      PAS N+   P+ 
Sbjct: 255 KEMTDGGVDFSFEV-IGRLDTMMASLLCCHEACGTSVIVGVP------PASQNLSINPML 307

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 36/228 (15%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
           +V I +    VC  D+  T  K   + +P+V GHE  GIV+ VG  V+ FK GD V +  
Sbjct: 35  EVRIQVIATCVCPTDINATDPKK-KALFPVVLGHECAGIVESVGPGVTNFKPGDKV-IPF 92
Query: 96  YVNSCRDCEYCNDGLEVHC--------------------------ARSVYTFNAIDADGT 129
           +   C+ C+ C   L   C                           RS+Y F  + +   
Sbjct: 93  FAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSS--- 149
Query: 130 ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGL 189
                +S Y VV E    ++ ++              + Y   +      PG +  V GL
Sbjct: 150 -----FSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL 204
Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ 237
           G +G  A+   K  G +  +      +K      LGA   +   +L++
Sbjct: 205 GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDK 252

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 107/297 (36%), Gaps = 34/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D     + +  +  P++ GHE  GIV+ VG 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVAAGICRSDE-HVVSGNLVTPLPVILGHEAAGIVESVGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT---------- 129
            V+  K GD V +  +   C  C  C +    +C ++ +        DGT          
Sbjct: 79  GVTTVKPGDKV-IPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPI 137
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    +S Y VV E    KI                 T Y   ++     PG +  V
Sbjct: 138 HHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAV 197
Query: 187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQM 238
            GLGG+G   V   KA G    +       K      LGA + +   D        L++M
Sbjct: 198 FGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEM 257
Query: 239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
              G    F +     D    + +   +  G  V+VG P      P S N+   P+ 
Sbjct: 258 TDGGVDFSFEV-IGQLDTMMASLLCCHEACGTSVIVGVP------PDSQNLSINPML 307

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 104/297 (35%), Gaps = 34/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C  D          +  P++ GHE  GIV+ VG 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTM-VTPLPVILGHEAAGIVESVGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT---------- 129
            V+  K GD V +   +  C  C  C +    +C ++ V        DGT          
Sbjct: 79  GVTTVKPGDKV-IPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRRKPI 137
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    +S Y VV E    KI                 T Y   +      PG +  V
Sbjct: 138 HHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAV 197
Query: 187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQM 238
            GLGG+G  A+   KA G    +       K      LGA + +   D        L++M
Sbjct: 198 FGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEM 257
Query: 239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
              G    F +     D    + +   +  G  V+VG P      P S N+   P+ 
Sbjct: 258 TDGGVDFSFEV-IGRLDTMMASLLCCHEACGTSVIVGVP------PDSQNLSMNPML 307

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 29/267 (10%)
Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGD--SKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
           G ++V + +   G+C +DV  W   + GD   K P+V GHE  G V +VG  V   + GD
Sbjct: 29  GPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGD 88
Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
            V +        D E+C  G   + + +++       DG + +     +   +  +CYK+
Sbjct: 89  RVAIQPGAPRQTD-EFCKIG-RYNLSPTIFFCATPPDDGNLCR-----FYKHNANFCYKL 141
Query: 150 ANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLG----VIGLGGLGHMAVKFGKAFGL 205
            ++             + +      H   + G +LG    V G G +G + +   KA G 
Sbjct: 142 PDNVTFEEGALIEPLSVGI------HACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGA 195
Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFI--------IDTASGDHP 257
              V++  ++ +      +GAD F++    E  + + K ++ +        I+    +  
Sbjct: 196 AQVVVTDLSASRLSKAKEVGAD-FILEISNESPEEIAKKVEGLLGSKPEVTIECTGVETS 254
Query: 258 FDAYMSLLKVAGVYVLVGFPSKVKFSP 284
             A +      G  VLVG  S++   P
Sbjct: 255 IQAGIYATHSGGTLVLVGLGSEMTSVP 281

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 106/297 (35%), Gaps = 35/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D          +  P++ GHE  GIV+ +G 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL-VAPLPVIAGHEAAGIVESIGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT----------- 129
            V+  + GD V +  ++  C  C  C       C +++        DGT           
Sbjct: 79  GVTTVRPGDKV-IPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQDGTSRFTCRGKPIH 137
Query: 130 --ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVI 187
             +    +S Y VV E    KI                 T Y   ++      G +  V 
Sbjct: 138 HFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVF 197
Query: 188 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQMK 239
           GLGG+G   +   KA G    +       K      +GA + V   D        L +M 
Sbjct: 198 GLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMS 257
Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFPSKVKFSPASLNIGNAPLF 295
             G  +DF  +         A +S  + A GV V+VG P      P S N+   P+ 
Sbjct: 258 NGG--VDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVP------PDSQNLSMNPML 306

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 106/297 (35%), Gaps = 35/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D          +  P++ GHE  GIV+ +G 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL-VAPLPVIAGHEAAGIVESIGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT----------- 129
            V+  + GD V +  ++  C  C  C       C +++        DGT           
Sbjct: 79  GVTTVRPGDKV-IPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQDGTSRFTCRGKPIH 137
Query: 130 --ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVI 187
             +    +S Y VV E    KI                 T Y   ++      G +  V 
Sbjct: 138 HFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVF 197
Query: 188 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQMK 239
           GLGG+G   +   KA G    +       K      +GA + V   D        L +M 
Sbjct: 198 GLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMS 257
Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFPSKVKFSPASLNIGNAPLF 295
             G  +DF  +         A +S  + A GV V+VG P      P S N+   P+ 
Sbjct: 258 NGG--VDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVP------PDSQNLSMNPML 306

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 41/207 (19%)
Query: 21  VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP---GHEIVGIVKE 77
           VL    F   A G   V +     G+ + D   T  + G    P +P   G E  G+V+ 
Sbjct: 15  VLEYVDFEPEAPGPQAVVVRNKAIGLNFID---TYYRSGLYPAPFLPSGLGAEGAGVVEA 71
Query: 78  VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSS 137
           VG  V+RFKVGD V  GT                                G +  G YS 
Sbjct: 72  VGDEVTRFKVGDRVAYGT--------------------------------GPL--GAYSE 97
Query: 138 YIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMA 196
             V+ E    K+A+             G+TV   + +    +PG+ +      GG+G +A
Sbjct: 98  VHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLA 157
Query: 197 VKFGKAFGLNVTVLSTSTSKKEEALSL 223
            ++ KA G  +    +S  K   A +L
Sbjct: 158 CQWAKALGAKLIGTVSSPEKAAHAKAL 184

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 107/260 (41%), Gaps = 51/260 (19%)
Query: 36  DVSITITHCGVCYADVIWTRNKHGD-SKYPLVP---GHEIVGIVKEVGHNVSRFKVGDHV 91
            V I +  CGV   + + T  + G  S+ PL+P   G ++ G+++ VG N S FK GD V
Sbjct: 59  QVLIKVHACGV---NPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115
Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                                      +T + I        GGY+ Y +  +   YK+  
Sbjct: 116 ---------------------------FTSSTIS-------GGYAEYALAADHTVYKLPE 141
Query: 152 DYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL 210
                          T Y  ++     + G+S+ V G  GG+G  A +  +A+GL   +L
Sbjct: 142 KLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK--IL 199
Query: 211 STSTSKKEEALSLL-GADKFVVSSDLEQMKALG-----KSLDFIIDTASGDHPFDAYMSL 264
            T+ +++ + + L  GA +     ++  +  +      K +D II+  +  +     +SL
Sbjct: 200 GTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSL 258
Query: 265 LKVAGVYVLVGFPSKVKFSP 284
           L   G  ++VG    ++ +P
Sbjct: 259 LSHGGRVIVVGSRGTIEINP 278

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 165 GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL 224
           G+T    + + ++ Q    L   G GG+GH+A++  K  G   TV++T++ +    L  L
Sbjct: 138 GLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTASKRNHAFLKAL 195
Query: 225 GADKFVVSSDLEQMKALGKSLDFIIDTASGD 255
           GA++ +   + + + A+   +D +ID   GD
Sbjct: 196 GAEQCINYHEEDFLLAISTPVDAVIDLVGGD 226

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 106/301 (35%), Gaps = 42/301 (13%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D          +  P++ GHE  GIV+ +G 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTL-VTPLPVIAGHEAAGIVESIGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDADGT---------- 129
            V+  + GD V +  +   C  C  C       C ++  +       DGT          
Sbjct: 79  GVTTVRPGDKV-IPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPI 137
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    +S Y VV E    KI                 T Y   ++      G +  V
Sbjct: 138 HHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAV 197
Query: 187 IGLGGLGHMAVKFGKAFG----LNVTVLSTSTSKKEEALSLLGADKFVVSSD-------- 234
            GLGG+G   +   KA G    + V +     +K +E    +GA + V   D        
Sbjct: 198 FGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKE----VGATECVNPQDYKKPIQEV 253
Query: 235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPL 294
           L +M   G    F +     D    A     +  GV V+VG P      P S N+   P+
Sbjct: 254 LTEMSNGGVDFSFEV-IGRLDTMVTALSCCQEAYGVSVIVGVP------PDSQNLSMNPM 306
Query: 295 F 295
Sbjct: 307 L 307

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 101/297 (34%), Gaps = 34/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D          +  P++ GHE  GIV+ +G 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTPLPVIAGHEAAGIVESIGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDADGT---------- 129
            V+  + GD V +  +   C  C  C       C ++  +       DGT          
Sbjct: 79  GVTTVRPGDKV-IPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPI 137
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    +S Y VV E    KI                 T Y   ++      G +  V
Sbjct: 138 HHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAV 197
Query: 187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQM 238
            GLGG+G   +   KA G    +       K      +GA + V   D        L +M
Sbjct: 198 FGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM 257
Query: 239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
              G    F +     D    A     +  GV V+VG P      P S N+   P+ 
Sbjct: 258 SNGGVDFSFEV-IGRLDTMVTALSCCQEAYGVSVIVGVP------PDSQNLSMNPML 307

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 37  VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY 96
           V + +    +C +D    R +   ++  LV GHEI G V E G +V   ++GD V V   
Sbjct: 36  VILKVVSTNICGSDQHMVRGRT-TAQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN 94
Query: 97  V--NSCRDCEYCNDG--LEVHCARSVYTFNAID-ADGTITKGGYSSYIVV 141
           V    CR C+  + G  L V+ AR+   +  +D  D T   GG + Y++V
Sbjct: 95  VACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWT---GGQAEYVLV 141

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 101/297 (34%), Gaps = 34/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D          +  P++ GHE  GIV+ +G 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTPLPVIAGHEAAGIVESIGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDADGT---------- 129
            V+  + GD V +  +   C  C  C       C ++  +       DGT          
Sbjct: 79  GVTTVRPGDKV-IPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPI 137
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    +S Y VV E    KI                 T Y   ++      G +  V
Sbjct: 138 HHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAV 197
Query: 187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQM 238
            GLGG+G   +   KA G    +       K      +GA + V   D        L +M
Sbjct: 198 FGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM 257
Query: 239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
              G    F +     D    A     +  GV V+VG P      P S N+   P+ 
Sbjct: 258 SNGGVDFSFEV-IGRLDTMVTALSCCQEAYGVSVIVGVP------PDSQNLSMNPML 307

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 101/297 (34%), Gaps = 34/297 (11%)
Query: 24  PYSFNRRAVG---SDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           P+S     V    + +V I +   G+C +D          +  P++ GHE  GIV+ +G 
Sbjct: 20  PFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTPLPVIAGHEAAGIVESIGE 78
Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDADGT---------- 129
            V+  + GD V +  +   C  C  C       C ++  +       DGT          
Sbjct: 79  GVTTVRPGDKV-IPLWTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPI 137
Query: 130 ---ITKGGYSSYIVVHERYCYKIANDYXXXXXXXXXXXGITVYTPMMRHKMNQPGKSLGV 186
              +    +S Y VV E    KI                 T Y   ++      G +  V
Sbjct: 138 HHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAV 197
Query: 187 IGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--------LEQM 238
            GLGG+G   +   KA G    +       K      +GA + V   D        L +M
Sbjct: 198 FGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEM 257
Query: 239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLF 295
              G    F +     D    A     +  GV V+VG P      P S N+   P+ 
Sbjct: 258 SNGGVDFSFEV-IGRLDTMVTALSCCQEAYGVSVIVGVP------PDSQNLSMNPML 307

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-160
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-159
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-151
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-147
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-146
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-104
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-103
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-100
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-62
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-59
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-59
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	4e-58
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-40
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	9e-39
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-37
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	5e-37
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-36
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	6e-36
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-34
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	5e-34
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-33
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	3e-33
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-31
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	5e-31
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	5e-31
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	6e-31
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-29
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-29
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-29
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-29
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	3e-29
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	2e-28
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	4e-28
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	2e-27
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	9e-27
3gms_A	340	Putative NADPH:quinone reductase; structural genom	3e-26
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-26
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-25
4eye_A	342	Probable oxidoreductase; structural genomics, niai	6e-25
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-24
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	1e-24
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-24
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	6e-24
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	7e-24
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	3e-23
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	6e-21
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-20
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-20
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	1e-19
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-18
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-18
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-17
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-17
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	7e-17
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-16
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	4e-15
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	6e-15
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	6e-14
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	3e-13
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	2e-11
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	2e-10
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	6e-10
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	5e-06
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	1e-05
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	5e-05
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	7e-05
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  449 bits (1158), Expect = e-160
 Identities = 134/292 (45%), Positives = 188/292 (64%), Gaps = 1/292 (0%)

Query: 1   MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD 60
           M    A +   GWAARDPSG+LSPY++  R  G +DV+I I  CG+C+ D+  T+N  G 
Sbjct: 1   MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM 60

Query: 61  SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT 120
           S YP+VPGHE+VG V EVG +VS+F VGD VGVG  V  C  C  C   LE +C + +++
Sbjct: 61  SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS 120

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
           +N +  +G  T+GG++   VVH+++  KI     +  AAPLLCAG+TVY+P+    + QP
Sbjct: 121 YNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQP 180

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           G   G++GLGG+GHM VK  KA G +VTV+S+S  K+EEAL  LGAD +V+ SD  +M  
Sbjct: 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSE 240

Query: 241 LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGN 291
           L  SLD++IDT    H  + Y+SLLK+ G  +L+G  +  ++F    L +G 
Sbjct: 241 LADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGR 292

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  448 bits (1154), Expect = e-159
 Identities = 151/291 (51%), Positives = 192/291 (65%), Gaps = 1/291 (0%)

Query: 2   TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS 61
             E       GWAARD SG LSP++F+RRA G +DV   + +CGVC++D+   +N  G S
Sbjct: 9   PEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFS 68

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
            YPLVPGHEIVG V EVG  V +  VGD VGVG  V +C  CE C + LE +C + + T+
Sbjct: 69  MYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTY 128

Query: 122 NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
            +I  DGTIT GGYS+++V +ERY  +  ++ PL   APLLCAGITVY+P+    +++PG
Sbjct: 129 ASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPG 188

Query: 182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL 241
           K +G++GLGGLGH+AVKF KAFG  VTV+STS SKKEEAL   GAD F+VS D EQM+A 
Sbjct: 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAA 248

Query: 242 GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGN 291
             +LD IIDT S  HP      LLK  G  +LVG P K ++    SL  G 
Sbjct: 249 AGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGR 299

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  427 bits (1100), Expect = e-151
 Identities = 125/290 (43%), Positives = 165/290 (56%), Gaps = 4/290 (1%)

Query: 2   TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS 61
             + A        A      L P    RR  G +DV I I +CGVC++D+   R++   +
Sbjct: 15  LYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT 74

Query: 62  KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF 121
            YP VPGHEIVG V  VG  V ++  GD VGVG  V+SC+ CE C DGLE +C     T+
Sbjct: 75  VYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTY 134

Query: 122 NAIDADGT-ITKGGYSSYIVVHERYCYKI-ANDYPLALAAPLLCAGITVYTPMMRHKMNQ 179
           N+   D    T GGYS  IVVHERY  +I      LA  APLLCAGIT Y+P+   +   
Sbjct: 135 NSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQA-G 193

Query: 180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK 239
           PGK +GV+G+GGLGHM +K   A G +V   +TS +K+E A + LGAD+ V S + ++M 
Sbjct: 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LGADEVVNSRNADEMA 252

Query: 240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNI 289
           A  KS DFI++T +  H  D + +LLK  G   LVG P+    SP   N+
Sbjct: 253 AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNL 302

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  415 bits (1070), Expect = e-147
 Identities = 98/298 (32%), Positives = 152/298 (51%), Gaps = 12/298 (4%)

Query: 1   MTSETASKDCLGWAARDPSGV--LSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH 58
           M+     +   G A +            ++ +     D+ I I  CGVC +D+       
Sbjct: 1   MSYPEKFE---GIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHW 57

Query: 59  GDSKYPLVPGHEIVGIVKEVGHNV-SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARS 117
           G+ K PLV GHEIVG V ++G    S  KVG  VGVG  V SC +C+ C +  E +C + 
Sbjct: 58  GNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKF 117

Query: 118 VYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKM 177
           V T++    DG +++GGY++Y+ VHE +   I  + P  LAAPLLC G+TVY+P++R+  
Sbjct: 118 VTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGC 177

Query: 178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL-E 236
             PGK +G++GLGG+G M     KA G    V+S S+ K+E+A+  +GAD ++ + +  +
Sbjct: 178 -GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGADHYIATLEEGD 235

Query: 237 QMKALGKSLDFIIDTASGDHPFD--AYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGN 291
             +    + D I+  AS     D       +KV G  V +  P +    S     +  
Sbjct: 236 WGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKA 293

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  412 bits (1062), Expect = e-146
 Identities = 110/289 (38%), Positives = 154/289 (53%), Gaps = 13/289 (4%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEI 71
           G+A         P+ F+R AVG  DV I I + G+C++D+    ++  +  YP++PGHEI
Sbjct: 7   GFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEI 66

Query: 72  VGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID--ADGT 129
            GI+KEVG  V +FK+GD VGVG +VNSC+ C+ C +  E  C + V+T++ +D   D  
Sbjct: 67  AGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNE 126

Query: 130 ITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL 189
              GGYS+ IVV E Y   +  + PL   APLLCAGIT Y+P+   K+   G  +GV G 
Sbjct: 127 PHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVT-KGTKVGVAGF 185

Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII 249
           GGLG MAVK+  A G  V+V + +  KK++ALS +G   F         K   + LDFII
Sbjct: 186 GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS-MGVKHFYTD-----PKQCKEELDFII 239

Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRFK 298
            T    +    Y+ LL   G   LVG P        +  +         
Sbjct: 240 STIPTHYDLKDYLKLLTYNGDLALVGLPPV----EVAPVLSVFDFIHLG 284

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  306 bits (785), Expect = e-104
 Identities = 77/280 (27%), Positives = 119/280 (42%), Gaps = 16/280 (5%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHE 70
           G    +  G L           ++++ I + + GVC+ D+           K PLV GHE
Sbjct: 8   GVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHE 67

Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
             G+V  +G NV  +K+GD+ G+     SC  CEYC  G E +C  +  +       G  
Sbjct: 68  GAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS-------GYT 120

Query: 131 TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL- 189
             G +  Y          I     LA  AP+LCAGITVY  +    +   G  + + G  
Sbjct: 121 HDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANL-MAGHWVAISGAA 179

Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-----LEQMKALGKS 244
           GGLG +AV++ KA G  V  +     K+E   S +G + F+  +         +KA    
Sbjct: 180 GGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IGGEVFIDFTKEKDIVGAVLKATDGG 238

Query: 245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSP 284
              +I+ +  +   +A    ++  G  VLVG P+  K   
Sbjct: 239 AHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCS 278

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  302 bits (777), Expect = e-103
 Identities = 87/281 (30%), Positives = 125/281 (44%), Gaps = 14/281 (4%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHE 70
                     L      +  +   +V + I  CGVC+ D+           K PL+PGHE
Sbjct: 3   AAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHE 62

Query: 71  IVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI 130
            VGIV+EVG  V+  KVGD VG+    ++C  C+YC  G E  C             G  
Sbjct: 63  GVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA-------GYS 115

Query: 131 TKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLG 190
             GGY+ Y      Y  KI ++     AAP+ CAG+T Y   ++    +PG+ + + G+G
Sbjct: 116 VDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA-LKVTGAKPGEWVAIYGIG 174

Query: 191 GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKALGKSLDF 247
           GLGH+AV++ KA GLNV  +     K E A   LGAD  V        + MK     +  
Sbjct: 175 GLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LGADLVVNPLKEDAAKFMKEKVGGVHA 233

Query: 248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASL 287
            + TA     F +  + ++  G  VLVG P + +       
Sbjct: 234 AVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDT 274

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  297 bits (762), Expect = e-100
 Identities = 80/279 (28%), Positives = 118/279 (42%), Gaps = 14/279 (5%)

Query: 14  AARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNK-HGDSKYPLVPGHEIV 72
             R     L+         G   V + I   GVC+ D+             P +PGHE V
Sbjct: 7   VVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGV 66

Query: 73  GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITK 132
           G V  VG  VSR K GD VGV    ++C  CE+C  G E  C +   T       G    
Sbjct: 67  GYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT-------GYSVN 119

Query: 133 GGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGL 192
           GGY  Y+V    Y   + +       AP+LCAG+TVY   ++    +PG+ + + G+GGL
Sbjct: 120 GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKG-LKVTDTRPGQWVVISGIGGL 178

Query: 193 GHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKALGKSLDFII 249
           GH+AV++ +A GL V  +    +K   A   LGA+  V + D      ++        ++
Sbjct: 179 GHVAVQYARAMGLRVAAVDIDDAKLNLARR-LGAEVAVNARDTDPAAWLQKEIGGAHGVL 237

Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASL 287
            TA     F   + +++  G   L G P          +
Sbjct: 238 VTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDV 276

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  200 bits (512), Expect = 1e-62
 Identities = 73/271 (26%), Positives = 114/271 (42%), Gaps = 29/271 (10%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGD------SKYPLVPGHEIVGIVKEVGHNVSRF 85
           G  DV + I   GVC+ D+ +      G        K P   GHE VG ++EV   V   
Sbjct: 40  GRFDVIVRIAGAGVCHTDLHLV----QGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGL 95

Query: 86  KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY 145
           + GD V +     +   C  C  G ++HC    +        G    GG++ ++    R 
Sbjct: 96  EKGDPVILH-PAVTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRS 147

Query: 146 CYKIANDYP---LALAAPLLCAGITVYTPMMRHKMN-QPGKSLGVIGLGGLGHMAVKFGK 201
             K+  D     L   APL  AGIT Y  + +      PG  + ++G+GGLGH+AV+  K
Sbjct: 148 VIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLK 207

Query: 202 AFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQMKAL--GKSLDFIIDTASGDH 256
                 V  L     K + A   LGAD  V +    ++Q+  L  G+ ++  +D      
Sbjct: 208 VMTPATVIALDVKEEKLKLAER-LGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQA 266

Query: 257 PFDAYMSLLKVAGVYVLVGFPSKVKFSPASL 287
             D    LL   G  ++VG+  +++F    +
Sbjct: 267 TVDYTPYLLGRMGRLIIVGYGGELRFPTIRV 297

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  192 bits (490), Expect = 2e-59
 Identities = 76/271 (28%), Positives = 111/271 (40%), Gaps = 26/271 (9%)

Query: 33  GSDDVSITITHCGVCYADV-IW-------TRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR 84
               V I +   GVC++DV +           +    K P+  GHEI G ++EVG  V  
Sbjct: 24  KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVG 83

Query: 85  FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER 144
           +  GD V V        +C YC  G E  C    +        G    G Y+ Y++V   
Sbjct: 84  YSKGDLVAVN-PWQGEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHY 135

Query: 145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKA- 202
                        AAPL C+GIT Y   +R     P K+L V+G  GGLG MAV+  KA 
Sbjct: 136 KYMYKLRRLNAVEAAPLTCSGITTYR-AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194

Query: 203 FGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGDHP 257
            G  +  +       E A    GAD  + +S  + +  +      K +D +ID  + +  
Sbjct: 195 SGATIIGVDVREEAVEAAKR-AGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKT 253

Query: 258 FDAYMSLLKVAGVYVLVG-FPSKVKFSPASL 287
              Y   L   G YV+VG F + + +    +
Sbjct: 254 LSVYPKALAKQGKYVMVGLFGADLHYHAPLI 284

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  192 bits (489), Expect = 2e-59
 Identities = 71/270 (26%), Positives = 102/270 (37%), Gaps = 29/270 (10%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGD-----SKYPLVPGHEIVGIVKEVGHNVSRFK 86
             ++V I I   GVC  D+ +W     G       + P++ GHE  G + EVG  +++ K
Sbjct: 27  QGEEVLIRIGGAGVCRTDLRVW----KGVEAKQGFRLPIILGHENAGTIVEVG-ELAKVK 81

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
            GD+V V         C YC +G    C   +         G  T GG+S Y++V     
Sbjct: 82  KGDNVVVY-ATWGDLTCRYCREGKFNICKNQIIP-------GQTTNGGFSEYMLVKSSRW 133

Query: 147 YKIANDYPLALAAPLLCAGITVYT---PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
               N      AAPL  AG T        +          + V G+GGL    ++  KA 
Sbjct: 134 LVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKAL 193

Query: 204 GLNVTV--LSTSTSKKEEALSLLGADKFVVSSDL-EQMKAL--GKSLDFIIDTASGDHPF 258
             N+T+  +S S   ++ AL  LGAD      D    +  L  G      ID    +   
Sbjct: 194 MKNITIVGISRSKKHRDFALE-LGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEETT 252

Query: 259 DAYMSLLKVAGVYVLVG-FPSKVKFSPASL 287
                LL   G  +LVG    +V       
Sbjct: 253 YNLGKLLAQEGAIILVGMEGKRVSLEAFDT 282

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  188 bits (481), Expect = 4e-58
 Identities = 71/253 (28%), Positives = 106/253 (41%), Gaps = 12/253 (4%)

Query: 33  GSDDVSITITHCGVCYAD--VIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
           G  ++ + +T  G+C++D  V+           PL  GHE VG V E+G  V+ F VGD 
Sbjct: 24  GPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDA 83

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
           V V      C  C  C  G E +C R+      I   G  + G  + Y++V         
Sbjct: 84  VAV-YGPWGCGACHACARGRENYCTRAADL--GITPPGLGSPGSMAEYMIVDSARHLVPI 140

Query: 151 NDYPLALAAPLLCAGITVYTPMMRHKMN-QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVT 208
            D     AAPL  AG+T Y  + R      PG +  VIG+GGLGH+ ++  +A     V 
Sbjct: 141 GDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVI 200

Query: 209 VLSTSTSKKEEALSLLGADKFVVSSD--LEQMKAL--GKSLDFIIDTASGDHPFDAYMSL 264
            +     +   A   +GAD  V S     + ++ L  G+    + D        D    +
Sbjct: 201 AVDLDDDRLALARE-VGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQV 259

Query: 265 LKVAGVYVLVGFP 277
           + V G   +VG  
Sbjct: 260 VAVDGHISVVGIH 272

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  143 bits (364), Expect = 2e-40
 Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 19/263 (7%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS-----RFK 86
           +    + + I   GVC +DV   R +      P++ GHE  G V EV            K
Sbjct: 40  IPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLK 99

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHC--ARSVYTFNAIDADGTITKGGYSSYIVVH-E 143
            GD + V     +C +C +C    E +    R VY  N   ++    +G YSS+IV+  E
Sbjct: 100 PGDLI-VWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPE 158

Query: 144 RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
               K++    L + A  +C+G T Y     +  +  GK++ + G G LG   V   ++ 
Sbjct: 159 TDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSL 218

Query: 204 G-LNVTVLSTSTSKKEEALSLLGADKFVVSSD------LEQMKAL--GKSLDFIIDTASG 254
           G  NV V++ S ++ + A   +GAD  +   +       + +  +  G+  DFI++    
Sbjct: 219 GAENVIVIAGSPNRLKLAEE-IGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGD 277

Query: 255 DHPFDAYMSLLKVAGVYVLVGFP 277
                    LL+  G Y + G  
Sbjct: 278 SRALLEGSELLRRGGFYSVAGVA 300

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  138 bits (350), Expect = 9e-39
 Identities = 69/277 (24%), Positives = 114/277 (41%), Gaps = 31/277 (11%)

Query: 32  VGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKVG 88
            G  +V I +    +C  D+ I+  N+   S  K P + GHE+ G V E+G  V   +VG
Sbjct: 27  PGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVG 86

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D+V V T++  C  C  C  G    C         +D D     G ++ Y VV  +  +K
Sbjct: 87  DYVSVETHI-VCGKCYACRRGQYHVCQN--TKIFGVDTD-----GVFAEYAVVPAQNIWK 138

Query: 149 IANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG- 204
                P   A    PL  A  TV            GKS+ + G G LG + +   KA G 
Sbjct: 139 NPKSIPPEYATLQEPLGNAVDTVL------AGPISGKSVLITGAGPLGLLGIAVAKASGA 192

Query: 205 LNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFD 259
             V V   S  ++E A   +GAD  +   +   ++++  +  G  +D  ++ +      +
Sbjct: 193 YPVIVSEPSDFRRELAKK-VGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALE 251

Query: 260 AYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
             +  +  AG   L+G          +++  N  +F+
Sbjct: 252 QGLQAVTPAGRVSLLGLYPG----KVTIDFNNLIIFK 284

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  135 bits (341), Expect = 3e-37
 Identities = 58/261 (22%), Positives = 99/261 (37%), Gaps = 28/261 (10%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
             G DD+ + +  CG+C  D  +   +    S  P+  GHE  GIV E G  V     G 
Sbjct: 44  EPGPDDLLVKVEACGICGTDRHLL--HGEFPSTPPVTLGHEFCGIVVEAGSAVRDIAPGA 101

Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
            +     + SC  C  C  G    C         I  D     GG++ Y++V  +  ++I
Sbjct: 102 RITGDPNI-SCGRCPQCQAGRVNLCRN--LRAIGIHRD-----GGFAEYVLVPRKQAFEI 153

Query: 150 ANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-L 205
                    A   PL C    ++   +     + G ++ ++G G +G + V+  +  G  
Sbjct: 154 PLTLDPVHGAFCEPLACC---LHG--VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGAT 208

Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL----GKSLDFIIDTASGDHPF 258
            V + +   +K+  A   +GA   V  S    +E +          +D +I+ A      
Sbjct: 209 TVILSTRQATKRRLAEE-VGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETV 267

Query: 259 DAYMSLLKVAGVYVLVGFPSK 279
                L K  G  V++G   +
Sbjct: 268 KQSTRLAKAGGTVVILGVLPQ 288

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  134 bits (339), Expect = 5e-37
 Identities = 57/271 (21%), Positives = 85/271 (31%), Gaps = 29/271 (10%)

Query: 33  GSDDVSITITHCGVCYADV-----IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV 87
               + I   + G+C AD        T +     K  LV GHE +G+V+E  H    F  
Sbjct: 25  SYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEESYHG---FSQ 81

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           GD V        C  C  C  G    C    +    I        G    +     +Y  
Sbjct: 82  GDLVMPVNRR-GCGICRNCLVGRPDFCETGEFGEAGI----HKMDGFMREWWYDDPKYLV 136

Query: 148 KIANDYP--LALAAPLLCA---------GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMA 196
           KI         LA PL                             + + V+G G +G + 
Sbjct: 137 KIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLF 196

Query: 197 VKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQMKALGKSLDFIIDTASG 254
               + +GL V + +     + E   +        +S    +++K      D IID A+G
Sbjct: 197 TLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIID-ATG 255

Query: 255 DHP--FDAYMSLLKVAGVYVLVGFPSKVKFS 283
                    + LL   GV  L GF +     
Sbjct: 256 ADVNILGNVIPLLGRNGVLGLFGFSTSGSVP 286

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  132 bits (334), Expect = 2e-36
 Identities = 64/283 (22%), Positives = 105/283 (37%), Gaps = 22/283 (7%)

Query: 21  VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVG 79
           VL          G  +V + +    + + DV   +         P V G +  G+V  VG
Sbjct: 14  VLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVG 73

Query: 80  HNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYI 139
             V  F  GD V V     SC  CE C  G +  C R           G    G Y+ Y+
Sbjct: 74  PGVEGFAPGDEV-VINPGLSCGRCERCLAGEDNLCPRY-------QILGEHRHGTYAEYV 125

Query: 140 VVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVK 198
           V+ E        +     AA +    +T +  ++     +PG  + V+    G+   A++
Sbjct: 126 VLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQ 185

Query: 199 FGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTAS 253
             K FG  V   + S  K   A + LGAD+ V  +     ++++ L  GK  D ++D   
Sbjct: 186 IAKLFGARVIATAGSEDKLRRAKA-LGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG 244

Query: 254 GDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
             + F+  +      G   + G  S  +    +L      +F 
Sbjct: 245 ALY-FEGVIKATANGGRIAIAGASSGYE---GTLPFA--HVFY 281

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  130 bits (330), Expect = 6e-36
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 27/267 (10%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
             D+V + I   G+C +D+    +N      YP+  GHE  G +  VG  V     GD V
Sbjct: 24  HQDEVRVKIASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDDLHPGDAV 81

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                +  C  C  C  G    CA+  Y F     D     GG++ YIVV  +  + +  
Sbjct: 82  ACVPLL-PCFTCPECLKGFYSQCAK--YDFIGSRRD-----GGFAEYIVVKRKNVFALPT 133

Query: 152 DYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNV 207
           D P+   A   P+      ++            K++ +IG G +G +A++   A G  +V
Sbjct: 134 DMPIEDGAFIEPITVG---LHA--FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSV 188

Query: 208 TVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFDAYM 262
           T +  S+ K   A S  GA +   SS+    +    L   +    I++TA      +  +
Sbjct: 189 TAIDISSEKLALAKS-FGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAV 247

Query: 263 SLLKVAGVYVLVGFPSK-VKFSPASLN 288
            +        LVG   + +  + A+  
Sbjct: 248 EIAGPHAQLALVGTLHQDLHLTSATFG 274

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  126 bits (319), Expect = 4e-34
 Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 19/252 (7%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGD 89
             G  D+ +      + Y D +      G D  +P VP  ++ G+V+ VG +V+RF+ GD
Sbjct: 50  EAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGD 109

Query: 90  HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKI 149
            V + T+     D      G             A +  G    G  S Y+V+ E +    
Sbjct: 110 RV-ISTFAPGWLDGLRPGTGRT----------PAYETLGGAHPGVLSEYVVLPEGWFVAA 158

Query: 150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV 209
                 A A+ L CAG+T +  ++     + G  + V G GG+    ++  KA G  V V
Sbjct: 159 PKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIV 218

Query: 210 LSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFDAYMSL 264
            S+S  K + A + LGAD  +   +   +E++ AL   +  D I++ A G       +  
Sbjct: 219 TSSSREKLDRAFA-LGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAG-LGQSLKA 276

Query: 265 LKVAGVYVLVGF 276
           +   G   ++G 
Sbjct: 277 VAPDGRISVIGV 288

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  125 bits (317), Expect = 5e-34
 Identities = 63/277 (22%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKV 87
             G  ++ + +    +C  D+ IW  +       + PLV GHE  G+V+ VG  V R +V
Sbjct: 22  EPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQV 81

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           GDHV + +++  C  C  C  G    C         +D DG   +     Y+VV     +
Sbjct: 82  GDHVSLESHI-VCHACPACRTGNYHVCLN--TQILGVDRDGGFAE-----YVVVPAENAW 133

Query: 148 KIANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG 204
               D P  +AA   P   A   V+T  +       GKS+ + G G +G MA    +A G
Sbjct: 134 VNPKDLPFEVAAILEPFGNA---VHT--VYAGSGVSGKSVLITGAGPIGLMAAMVVRASG 188

Query: 205 -LNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKALGKSLDFIIDTASGDHP-FD 259
              + V   +  +   A             +       +  G  ++ +++  SG+     
Sbjct: 189 AGPILVSDPNPYRLAFARP-YADRLVNPLEEDLLEVVRRVTGSGVEVLLE-FSGNEAAIH 246

Query: 260 AYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
             +  L   G   ++G PS     P   ++    + R
Sbjct: 247 QGLMALIPGGEARILGIPSD----PIRFDLAGELVMR 279

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  125 bits (315), Expect = 1e-33
 Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 32/277 (11%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKV 87
               D+V + + + G+C +DV  +   +  D   K P+V GHE  G V +VG NV   K 
Sbjct: 25  EPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK 84

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           GD V V   V  CR C++C +G    C     TF A   D     G  + Y V    +C+
Sbjct: 85  GDRVAVEPGV-PCRRCQFCKEGKYNLCPD--LTFCATPPDD----GNLARYYVHAADFCH 137

Query: 148 KIANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG 204
           K+ ++  L   A   PL      V+    R    Q G ++ VIG G +G ++V   KA+G
Sbjct: 138 KLPDNVSLEEGALLEPLSVG---VHA--CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG 192

Query: 205 LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---------MKALGKSLDFIIDTASGD 255
             V   + S  + E A +  GAD  +V    ++           A+G   +  ID +  +
Sbjct: 193 AFVVCTARSPRRLEVAKN-CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNE 251

Query: 256 HPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNA 292
                 +++ +  G  +LVG  S+      ++ + NA
Sbjct: 252 KCITIGINITRTGGTLMLVGMGSQ----MVTVPLVNA 284

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  123 bits (312), Expect = 3e-33
 Identities = 56/269 (20%), Positives = 87/269 (32%), Gaps = 23/269 (8%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKV 87
              S +  +     GVC  D  +      G    +  LV GHE VG+V  V  N +  + 
Sbjct: 22  EPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV--VDPNDTELEE 79

Query: 88  GDHVGVGTYVN-SCRDCEYCNDGLEVHCARSVYTFNAI-DADGTITKGGYSSYIVVHERY 145
           GD V        +    EY            +Y    I  A      G  S +    E+Y
Sbjct: 80  GDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAH-----GYMSEFFTSPEKY 134

Query: 146 CYKIANDYP--LALAAPLLCAGITVY-TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKA 202
             +I         L  P+      +      R   +    S  V+G G LG + +   K 
Sbjct: 135 LVRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKV 194

Query: 203 F--GLNVTVLSTSTSKKEEALSL---LGADKFVVSSD-LEQMKALGKSLDFIIDTASGDH 256
              G           + +  + +   L A         +E +  + + +DFI + A+G  
Sbjct: 195 DDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYE-ATGFP 253

Query: 257 P-FDAYMSLLKVAGVYVLVGFPSKVKFSP 284
                 +  L   GV  L+G PS   F  
Sbjct: 254 KHAIQSVQALAPNGVGALLGVPSDWAFEV 282

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  119 bits (300), Expect = 2e-31
 Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 35/278 (12%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKV 87
             G ++V + +   G+C +DV  W   + G+   K P+V GHE  G V++VG +V   K 
Sbjct: 28  EPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKP 87

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAI-DADGTITKGGYSSYIVVHERYC 146
           GD V +        + E+C  G           F A    DG + +     +   +  +C
Sbjct: 88  GDRVAIEPGA-PRENDEFCKMGRYNLSPS--IFFCATPPDDGNLCR-----FYKHNAAFC 139

Query: 147 YKIANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
           YK+ ++      A   PL      ++    R      G  + V G G +G + +   KA 
Sbjct: 140 YKLPDNVTFEEGALIEPLSVG---IHA--CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAM 194

Query: 204 G-LNVTVLSTSTSKKEEALSLLGADKFVVSS--DLEQM-----KALGKSLDFIIDTASGD 255
           G   V V   S ++  +A   +GAD  +  S    +++       LG   +  I+  +G 
Sbjct: 195 GAAQVVVTDLSATRLSKAKE-IGADLVLQISKESPQEIARKVEGQLGCKPEVTIE-CTGA 252

Query: 256 HP-FDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNA 292
                A +   +  G  VLVG  S+      ++ + +A
Sbjct: 253 EASIQAGIYATRSGGTLVLVGLGSE----MTTVPLLHA 286

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  118 bits (297), Expect = 5e-31
 Identities = 57/291 (19%), Positives = 96/291 (32%), Gaps = 51/291 (17%)

Query: 17  DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDS-KYPLVPGHEIVGIV 75
           DP+ V+   +    AV   DV + +    +  +D+   +  +G   + P V G+E V  V
Sbjct: 37  DPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQV 96

Query: 76  KEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGY 135
             VG NV+  K GD V +                                       G +
Sbjct: 97  VAVGSNVTGLKPGDWV-IPANAGL---------------------------------GTW 122

Query: 136 SSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN-QPGKSLGVIGL-GGLG 193
            +  V  E    ++ +D PL  AA L     T Y  M+      QPG S+       G+G
Sbjct: 123 RTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYR-MLMDFEQLQPGDSVIQNASNSGVG 181

Query: 194 HMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKFVVSSDL---EQMKAL--GKSL 245
              ++   A GL    +       ++       LGA+  +   +L   E           
Sbjct: 182 QAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQP 241

Query: 246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
              ++   G       +  L   G  V  G  +K    P   ++ +  +F+
Sbjct: 242 RLALNCVGGKS-STELLRQLARGGTMVTYGGMAK---QPVVASV-SLLIFK 287

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  118 bits (298), Expect = 5e-31
 Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 38/284 (13%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
             D+V + +   G+C+ D+I  R++      P V GHE  GI++ +G NV+  +VGDHV 
Sbjct: 30  QGDEVLVKVVATGMCHTDLI-VRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHV- 87

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGT--ITKGG-------------YS 136
           V +Y   C  C  CN G   +C+      F+  D++G   +                 ++
Sbjct: 88  VLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFA 146

Query: 137 SYIVVHERYCYKIANDYPLALAAPLLCAGIT-----VYTPMMRHKMNQPGKSLGVIGLGG 191
           +Y +  E    K+  D P+ L  PL C   T     +    +      P  S    G G 
Sbjct: 147 TYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVT-----PASSFVTWGAGA 201

Query: 192 LGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL-GKSLD 246
           +G  A+   K  G   +  +    S+ E A   LGA   + S     +  +K +    ++
Sbjct: 202 VGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LGATHVINSKTQDPVAAIKEITDGGVN 260

Query: 247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASL 287
           F +++          +  L + G   +VG P   +  +F    L
Sbjct: 261 FALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDL 304

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  119 bits (299), Expect = 6e-31
 Identities = 56/311 (18%), Positives = 93/311 (29%), Gaps = 55/311 (17%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKY-------- 63
           G A +D    L         +  D+V + +    + Y  V W+        +        
Sbjct: 40  GVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTV-WSAMFEPIPTFHFLKQNAR 98

Query: 64  -----------PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEV 112
                        V G +  G+V   G  V R+K GDHV V  +     + E    G  +
Sbjct: 99  QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIV--HPAHVDEQEPATHGDGM 156

Query: 113 HCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPM 172
                               GG + Y VV                AA       T Y  +
Sbjct: 157 LGTEQRAWG------FETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRML 210

Query: 173 MRHKMN--QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF 229
           +  +    + G  + + G  GGLG  A++F K  G     + +S  K+    + LG D  
Sbjct: 211 VSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA-LGCDLV 269

Query: 230 VVSSDLEQMKAL----------------------GKSLDFIIDTASGDHPFDAYMSLLKV 267
           +  ++L     +                      G+  D + +       F   + + + 
Sbjct: 270 INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARR 328

Query: 268 AGVYVLVGFPS 278
            G  V  G  S
Sbjct: 329 GGTVVTCGSSS 339

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  114 bits (287), Expect = 2e-29
 Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 40/283 (14%)

Query: 37  VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY 96
           V I +    VC  D+    +    + +P+V GHE  GIV+ VG  V+ FK GD V +  +
Sbjct: 36  VRIQVIATCVCPTDIN-ATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKV-IPFF 93

Query: 97  VNSCRDCEYCNDGLEVHCARSVYTFNAID-----ADGT--ITKGG-----------YSSY 138
              C+ C+ C   L   C +               D T   T  G           +S Y
Sbjct: 94  APQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQY 153

Query: 139 IVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVK 198
            VV E    ++ ++  L     + C   + Y   +      PG +  V GLG +G  A+ 
Sbjct: 154 TVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213

Query: 199 FGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG--D 255
             K  G   +  +  +  K  +A + LGA   +   +L++        D I +  +G  D
Sbjct: 214 GCKIAGASRIIAIDINGEKFPKAKA-LGATDCLNPRELDKPVQ-----DVITELTAGGVD 267

Query: 256 HPFD----------AYMSLLKVAGVYVLVGFP-SKVKFSPASL 287
           +  D          A    +   G   +VG    ++      +
Sbjct: 268 YSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDV 310

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  115 bits (290), Expect = 2e-29
 Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 53/291 (18%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKY------------------PLVPGHEIV 72
            +G  +  + +    V Y  V  +  +   +                      V G ++ 
Sbjct: 67  ELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLA 126

Query: 73  GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITK 132
           G+V   G  V+ ++ GD V V   ++   +    ++   +   + ++ F           
Sbjct: 127 GVVLRTGPGVNAWQAGDEV-VAHCLSVELESSDGHNDTMLDPEQRIWGFETNF------- 178

Query: 133 GGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN--QPGKSLGVIGL- 189
           GG +   +V         +      AA       T Y  ++       + G ++ + G  
Sbjct: 179 GGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGAS 238

Query: 190 GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-------------KFVVSSDLE 236
           GGLG  A +F  A G N   + +S  K E   + +GA+             K   + D +
Sbjct: 239 GGLGSYATQFALAGGANPICVVSSPQKAEICRA-MGAEAIIDRNAEGYRFWKDENTQDPK 297

Query: 237 QMKALGKSL---------DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS 278
           + K  GK +         D + +    +  F A + + +  G        S
Sbjct: 298 EWKRFGKRIRELTGGEDIDIVFEHPGRET-FGASVFVTRKGGTITTCASTS 347

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  114 bits (288), Expect = 2e-29
 Identities = 53/281 (18%), Positives = 98/281 (34%), Gaps = 46/281 (16%)

Query: 33  GSDDVSITITHCGVCYADV-IWTRNKHGD------SKYPLVPGHEIVGIVKEVGHNV--- 82
              ++ I +  CG+C +DV +   ++ G       + +P+  GHE  G+V E G      
Sbjct: 54  KPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINR 113

Query: 83  ---SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYI 139
               RF++G+ V     +  C  C  C +G   HC          + D     G ++ Y+
Sbjct: 114 RTNKRFEIGEPVCAEEML-WCGHCRPCAEGFPNHCEN--LNELGFNVD-----GAFAEYV 165

Query: 140 VVHERYCYKI-------ANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGL 189
            V  +Y + +         D      +   P   A       ++R    +PG ++ ++G 
Sbjct: 166 KVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVA---YNAVIVRGGGIRPGDNVVILGG 222

Query: 190 GGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GK 243
           G +G  AV   K  G   V +   S  ++  A   LGAD  +  +    +E +     G 
Sbjct: 223 GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE-LGADHVIDPTKENFVEAVLDYTNGL 281

Query: 244 SLDFIIDTASGDHPFDAYMSLLKVAG-----VYVLVGFPSK 279
                ++           +  +            +V     
Sbjct: 282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADA 322

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  113 bits (286), Expect = 2e-29
 Identities = 67/278 (24%), Positives = 110/278 (39%), Gaps = 34/278 (12%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
            ++++ I I   GVC+ D+           +P+V GHE  GIV+ VG  V+ F+ G+ V 
Sbjct: 32  HANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKV- 90

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNA-IDADGT--ITKGG-----------YSSY 138
           +  +++ C +C +C       C +     +  + +      T  G           +S Y
Sbjct: 91  IPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQY 150

Query: 139 IVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVK 198
            VV++    KI    PL     L C   T +   +     +PG +  V GLG +G  AV 
Sbjct: 151 TVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVM 210

Query: 199 FGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG--D 255
              + G   +  +  +  K E+A    GA  FV  +D  +  +       +    +G  D
Sbjct: 211 GCHSAGAKRIIAVDLNPDKFEKAKV-FGATDFVNPNDHSEPIS-----QVLSKMTNGGVD 264

Query: 256 HPFD----------AYMSLLKVAGVYVLVGFPSKVKFS 283
              +          A  S LK  GV VLVG+      +
Sbjct: 265 FSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVA 302

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  113 bits (285), Expect = 3e-29
 Identities = 70/281 (24%), Positives = 107/281 (38%), Gaps = 37/281 (13%)

Query: 37  VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY 96
           V I I    VC+ D         +  +P++ GH   GIV+ VG  V++ K GD V +  Y
Sbjct: 34  VRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTV-IPLY 92

Query: 97  VNSCRDCEYCNDGLEVHCARSVYTFNA-IDADGT--ITKGG-----------YSSYIVVH 142
           +  C +C++C +     C +   T    +  DGT   T  G           +S Y VV 
Sbjct: 93  IPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVA 152

Query: 143 ERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKA 202
           +    KI    PL     L C   T Y   +     +PG    V GLGG+G   +   K 
Sbjct: 153 DISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKV 212

Query: 203 FG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG--DHPFD 259
            G   +  +  +  K   A    GA + +   D  +        + +I+   G  D+ F+
Sbjct: 213 AGASRIIGVDINKDKFARAKE-FGATECINPQDFSKPIQ-----EVLIEMTDGGVDYSFE 266

Query: 260 ----------AYMSLLKVAGVYVLVGFP---SKVKFSPASL 287
                     A  +  K  GV V+VG      ++   P  L
Sbjct: 267 CIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQL 307

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  111 bits (279), Expect = 2e-28
 Identities = 67/280 (23%), Positives = 106/280 (37%), Gaps = 28/280 (10%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVG 92
            + +V I +   G+C +D     +    +  P++ GHE  GIV+ +G  V+  + GD V 
Sbjct: 32  KAHEVRIKMVATGICRSDD-HVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKV- 89

Query: 93  VGTYVNSCRDCEYCNDGLEVHCARSVYTFNA-IDADGT--ITKGG-----------YSSY 138
           +  +   C  C  C       C ++  +       DGT   T  G           +S Y
Sbjct: 90  IPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQY 149

Query: 139 IVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVK 198
            VV E    KI    PL     + C   T Y   ++      G +  V GLGG+G   + 
Sbjct: 150 TVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

Query: 199 FGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDL-----EQMKAL-GKSLDFIIDT 251
             KA G   +  +  +  K  +A   +GA + V   D      E +  +    +DF  + 
Sbjct: 210 GCKAAGAARIIGVDINKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268

Query: 252 A-SGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASL 287
               D    A     +  GV V+VG P     +  +P  L
Sbjct: 269 IGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLL 308

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  110 bits (277), Expect = 4e-28
 Identities = 51/279 (18%), Positives = 95/279 (34%), Gaps = 36/279 (12%)

Query: 31  AVGSDDVSITITHCGVCYADV-IWTRNKHGDS--KYPLVPGHEIVGIVKEVGHNVSRFKV 87
            +   +V++ +   G+C +DV  W     G    +   V GHE  G V  V  +V   KV
Sbjct: 37  ELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKV 96

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAI-DADGTITKGGYSSYIVVHERYC 146
           GD V +   V  C  CE C  G    C R    F +     G + +     Y+     +C
Sbjct: 97  GDRVAIEPQV-ICNACEPCLTGRYNGCER--VDFLSTPPVPGLLRR-----YVNHPAVWC 148

Query: 147 YKIANDYPLALAA---PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
           +KI  +      A   PL    + +    ++    + G  + + G G +G + +   KA 
Sbjct: 149 HKI-GNMSYENGAMLEPL---SVALAG--LQRAGVRLGDPVLICGAGPIGLITMLCAKAA 202

Query: 204 G-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL---------DFIIDTAS 253
           G   + +      + + A   +  +      +    +   K +            ++   
Sbjct: 203 GACPLVITDIDEGRLKFAKE-ICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTG 261

Query: 254 GDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNA 292
            +    A +  +K  G   ++G           +    A
Sbjct: 262 VESSIAAAIWAVKFGGKVFVIGVGKN----EIQIPFMRA 296

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  108 bits (272), Expect = 2e-27
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 49/286 (17%)

Query: 37  VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTY 96
           V I I   G+C +D      +   SK+P++ GHE VG+V+ +G  V+  K GD V +  +
Sbjct: 37  VRIKILASGICGSDS-SVLKEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKV-IPLF 94

Query: 97  VNSCRDCEYCNDGLEVHCARSVYTFNA-IDADGT--ITKGG-----------YSSYIVVH 142
           V  C  C  C       C ++       + AD T   T  G           ++ Y VV 
Sbjct: 95  VPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVA 154

Query: 143 ERYCYKIANDYPLALAAPLLCA-----GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAV 197
           +    KI    PL  +  + C      G  V T  +      PG +  V GLGG+G  A+
Sbjct: 155 DIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVT-----PGSTCAVFGLGGVGFSAI 208

Query: 198 KFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG-- 254
              KA G   +  + T   K  +A+  LGA + +   D ++        + I +  +G  
Sbjct: 209 VGCKAAGASRIIGVGTHKDKFPKAIE-LGATECLNPKDYDKPIY-----EVICEKTNGGV 262

Query: 255 DHPFD----------AYMSLLKVAGVYVLVGFP---SKVKFSPASL 287
           D+  +          A  S    +GV V++G      ++   P  L
Sbjct: 263 DYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL 308

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  105 bits (265), Expect = 9e-27
 Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 41/231 (17%)

Query: 55  RNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHC 114
           +    +     VPG +  G++ +VG  V    +G                          
Sbjct: 50  KANPINWSNGHVPGVDGAGVIVKVGAKVDSKMLGR------------------------- 84

Query: 115 ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR 174
              V    ++   G+     ++ + V++      + ++     AA L C  +T +    +
Sbjct: 85  --RVAYHTSLKRHGS-----FAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEK 137

Query: 175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD 234
             +    + + ++G G + ++  +     G  V +   S S  +   +  G     +  +
Sbjct: 138 IPL-TKQREVLIVGFGAVNNLLTQMLNNAGYVVDL--VSASLSQALAAKRGVR--HLYRE 192

Query: 235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA 285
             Q   + +    I D  +  +   A +  LK  G  + +         PA
Sbjct: 193 PSQ---VTQKYFAIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDPA 239

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  104 bits (262), Expect = 3e-26
 Identities = 52/285 (18%), Positives = 93/285 (32%), Gaps = 48/285 (16%)

Query: 17  DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIV 75
           +P  VL     N   +  ++V + +    +  +D+I     +      P +PG+E VGIV
Sbjct: 15  NPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIV 74

Query: 76  KEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGY 135
           + VG  VSR  +G  V                                        +G +
Sbjct: 75  ENVGAFVSRELIGKRV----------------------LP-------------LRGEGTW 99

Query: 136 SSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGH 194
             Y+     +   I +      AA +    +T +         Q    L V      +GH
Sbjct: 100 QEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGH 159

Query: 195 MAVKFGKAFGLNV--TVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDF 247
           +  +  +     +         +K  E L  LGA   + +S     E +  L  G   D 
Sbjct: 160 LFAQLSQILNFRLIAVT---RNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADA 216

Query: 248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNA 292
            ID+  G    +     L+  G ++ +G  S ++ + A +     
Sbjct: 217 AIDSIGGPD-GNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAK 260

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  105 bits (263), Expect = 3e-26
 Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 41/259 (15%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
              ++ I +  CG+ + D++  +    +  K PLVPG E  GIV+ +G +V  +++GD V
Sbjct: 29  QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRV 88

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                                  A              +    ++  +     + YKI +
Sbjct: 89  ----------------------MA-------------FVNYNAWAEVVCTPVEFVYKIPD 113

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAFGLNVTVL 210
           D   + AA      +T Y  +      + G S+ V    GG+G    +       NVTV 
Sbjct: 114 DMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVF 172

Query: 211 STSTSKKEEALSLLGADKFVVSSDL-EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVA 268
            T+++ K EA+       F  ++D  +++K +  + +D ++D   GD+     +SLLK  
Sbjct: 173 GTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPL 231

Query: 269 GVYVLVGFPSKVKFSPASL 287
           G Y+L G  + V     S 
Sbjct: 232 GTYILYGSSNMVTGETKSF 250

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  102 bits (255), Expect = 5e-25
 Identities = 51/319 (15%), Positives = 101/319 (31%), Gaps = 79/319 (24%)

Query: 17  DPSGVLS--PYSFNRRAVGSDDVSITITHCGVCYADVIWTRNK----------HGDSKYP 64
           +P  VL    +  +   +  ++V +      V  +D+   +             G ++  
Sbjct: 14  EPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPA 73

Query: 65  LVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAI 124
              G+E +  V +VG NVS  + GD V + ++VN                          
Sbjct: 74  APCGNEGLFEVIKVGSNVSSLEAGDWV-IPSHVNF------------------------- 107

Query: 125 DADGTITKGGYSSYIVVHERYCYKIAN-----------DYPLALAAPLLCAGITVYTPMM 173
                   G + ++ + ++    K+ N              +   A +    +T Y  M+
Sbjct: 108 --------GTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYL-ML 158

Query: 174 RHKMN-QPGKSLGVI--GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD 227
            H +   PGK   +   G   +G  A + GK    N   +       +E ++    LGA 
Sbjct: 159 THYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT 218

Query: 228 KFVVSSDL----------EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP 277
           + +               E +K  G      ++   G          L   G+ +  G  
Sbjct: 219 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGM 277

Query: 278 SKVKFSPASLNIGNAPLFR 296
           S     P ++   +  +F+
Sbjct: 278 SF---QPVTIPT-SLYIFK 292

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  101 bits (253), Expect = 6e-25
 Identities = 56/257 (21%), Positives = 93/257 (36%), Gaps = 54/257 (21%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSKY------PLVPGHEIVGIVKEVGHNVSRFK 86
           G + V + +   GVC+ D + T+ +     Y      P VPG E  G+V+      S  K
Sbjct: 47  GPNVVVVDVKAAGVCFPDYLMTKGE-----YQLKMEPPFVPGIETAGVVRSAP-EGSGIK 100

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
            GD V                       A                 GGY+  + V     
Sbjct: 101 PGDRV----------------------MA-------------FNFIGGYAERVAVAPSNI 125

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGL 205
                    A A  L+    T+Y    R    + G+++ V+G  GG+G  A++  K  G 
Sbjct: 126 LPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA 185

Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQMKAL--GKSLDFIIDTASGDHPFDAY 261
            V     + +   E +  +GAD  +   +   + ++    G  +D ++D   G   FD  
Sbjct: 186 KVIA-VVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGPA-FDDA 243

Query: 262 MSLLKVAGVYVLVGFPS 278
           +  L   G  ++VGF +
Sbjct: 244 VRTLASEGRLLVVGFAA 260

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  100 bits (252), Expect = 1e-24
 Identities = 57/266 (21%), Positives = 87/266 (32%), Gaps = 45/266 (16%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRN---KHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV 87
                 V + I   G    D    R     H     P + G ++ G V  VG  V  F+V
Sbjct: 29  QPAPGQVLVQIEASGTNPLDA-KIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDSFRV 87

Query: 88  GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCY 147
           GD V                         +              +G ++ +  V  R   
Sbjct: 88  GDAV----------------------FGLT--------GGVGGLQGTHAQFAAVDARLLA 117

Query: 148 KIANDYPLALAA--PLLCAGITVYTPMMRHKMNQPGKSLGVI-GLGGLGHMAVKFGKAFG 204
                  +  A+  PL    IT +  ++     Q G+++ +  G GG+GH+A++   A G
Sbjct: 118 SKPAALTMRQASVLPL--VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARG 175

Query: 205 LNVTVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKALGKSLDFIIDTASGDHPFDAY 261
               V +T+     E +  LGA          D       G+  D + DT  G    DA 
Sbjct: 176 --ARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGPV-LDAS 232

Query: 262 MSLLKVAGVYVLVGFPSKVKFSPASL 287
            S +K  G  V        K +P S 
Sbjct: 233 FSAVKRFGHVVSCLGWGTHKLAPLSF 258

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  100 bits (252), Expect = 1e-24
 Identities = 54/250 (21%), Positives = 85/250 (34%), Gaps = 44/250 (17%)

Query: 55  RNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHC 114
             K    ++PL  G ++ G+V E G +V  FK GD                         
Sbjct: 86  HVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDE------------------------ 121

Query: 115 ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR 174
              V+        GT      S ++VV                AA L    +T ++ + +
Sbjct: 122 ---VWAAVPPWKQGT-----LSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINK 173

Query: 175 H----KMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF 229
                  N  GK + ++G  GG+G  A++  KA+  +VT     +    E +  LGAD  
Sbjct: 174 VGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTA--VCSQDASELVRKLGADDV 231

Query: 230 V--VSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVA--GVYVLVGFPSKVKFSPA 285
           +   S  +E+     K  DFI+D   G          LK      YV +  P  +     
Sbjct: 232 IDYKSGSVEEQLKSLKPFDFILDNV-GGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRL 290

Query: 286 SLNIGNAPLF 295
            +  G     
Sbjct: 291 GIADGMLQTG 300

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 61/237 (25%), Positives = 100/237 (42%), Gaps = 50/237 (21%)

Query: 64  PLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNA 123
           P V G + +G+V+ VG+ V+ F  GD V                             + +
Sbjct: 60  PRVLGFDAIGVVESVGNEVTMFNQGDIV-----------------------------YYS 90

Query: 124 IDADGTITKGGYSSYIVVHERYCYKI-AN-DYPLALAAPLLCAGITVYT------PMMRH 175
              D     G  + Y +++ER   K   N     A++ PL   GIT Y        + R+
Sbjct: 91  GSPDQN---GSNAEYQLINERLVAKAPKNISAEQAVSLPL--TGITAYETLFDVFGISRN 145

Query: 176 KMNQPGKSLGVI-GLGGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLLGADKFV--V 231
           +    GK+L +I G GG+G +A +  KA+GL   V++T S ++  E    +GAD  +   
Sbjct: 146 RNENEGKTLLIINGAGGVGSIATQIAKAYGL--RVITTASRNETIEWTKKMGADIVLNHK 203

Query: 232 SSDLEQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVL-VGFPSKVKFSPAS 286
            S L Q K  G + +D++  T + D  +D  + L+K  G     V F +    +   
Sbjct: 204 ESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNALK 260

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 98.5 bits (246), Expect = 6e-24
 Identities = 40/293 (13%), Positives = 80/293 (27%), Gaps = 46/293 (15%)

Query: 12  GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHE 70
           G A       L        A G   V I +    +  +DV + + ++G         G E
Sbjct: 27  GSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFE 86

Query: 71  IVGIVKEVGHNV-SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT 129
            VG +   G    ++  VG  V                                  A G 
Sbjct: 87  GVGTIVAGGDEPYAKSLVGKRV--------------------------------AFATGL 114

Query: 130 ITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG- 188
              G ++ Y V     C  + +       A ++   +T        K  +  K+  +   
Sbjct: 115 SNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQ-EGEKAFVMTAG 173

Query: 189 LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GK 243
              L  + +   K  G    V      ++   L  +GA   +          ++ +   +
Sbjct: 174 ASQLCKLIIGLAKEEGFRPIVT-VRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAE 232

Query: 244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
                +D  +G     A  + +     +++ G           +      +F+
Sbjct: 233 QPRIFLDAVTGPL-ASAIFNAMPKRARWIIYGRLDP---DATVIREPGQLIFQ 281

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 98.0 bits (245), Expect = 7e-24
 Identities = 50/269 (18%), Positives = 90/269 (33%), Gaps = 47/269 (17%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRN------KHGDSKYPLVPGHEIVGIVKEVGHNVSR 84
               + + I +    +   D   TRN      K   +  P   G++  G V E+G +V+ 
Sbjct: 30  EYRKNQMLIKVHAASLNPIDY-KTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNN 88

Query: 85  FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER 144
             +GD V                                           Y+ Y+     
Sbjct: 89  VNIGDKV---------------------------MGIAGFPDHP----CCYAEYVCASPD 117

Query: 145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAF 203
              +         AA L  AG+T    + + ++ + G  + +    GG+GH+A++  K  
Sbjct: 118 TIIQKLEKLSFLQAASLPTAGLTALQALNQAEV-KQGDVVLIHAGAGGVGHLAIQLAKQK 176

Query: 204 GLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALGKSLDFIIDTASGDHPFDAY 261
           G  V   +T++ +    L  LGA++ +     D     A+   +D +ID   GD      
Sbjct: 177 GTTVI--TTASKRNHAFLKALGAEQCINYHEEDFLL--AISTPVDAVIDLVGGDV-GIQS 231

Query: 262 MSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
           +  LK  G  V V   +  +    +    
Sbjct: 232 IDCLKETGCIVSVPTITAGRVIEVAKQKH 260

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 54/272 (19%), Positives = 102/272 (37%), Gaps = 45/272 (16%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSK-YPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
               V I +  CGV   +       +      P  PG ++ G+++ VG N S FK GD  
Sbjct: 56  KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGD-- 113

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                               V  +             +   GGY+ Y +  +   YK+  
Sbjct: 114 -------------------RVFTS-------------STISGGYAEYALAADHTVYKLPE 141

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVL 210
                  A +     T Y  ++     + G+S+ V G  GG+G  A +  +A+G  + +L
Sbjct: 142 KLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYG--LKIL 199

Query: 211 ST-STSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFDAYMSL 264
            T  T + ++ +   GA +     +   ++++K     K +D II+  +  +     +SL
Sbjct: 200 GTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSL 258

Query: 265 LKVAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
           L   G  ++VG    ++ +P       + +  
Sbjct: 259 LSHGGRVIVVGSRGTIEINPRDTMAKESSIIG 290

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 90.3 bits (225), Expect = 6e-21
 Identities = 54/269 (20%), Positives = 93/269 (34%), Gaps = 51/269 (18%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKH----GDSKYPLVPGHEIVGIVKEVGHNVSRFK 86
             G  +V +     GV   D+   +  +      S    + G E+ G +  VG  VS + 
Sbjct: 52  VAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASP---ILGLELSGEIVGVGPGVSGYA 108

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
           VGD V                      C                  G Y+ Y ++     
Sbjct: 109 VGDKV----------------------CG-------------LANGGAYAEYCLLPAGQI 133

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAFGL 205
                 Y    AA L     TV+  + +      G+S+ +  G  G+G  A++  +AFG 
Sbjct: 134 LPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA 193

Query: 206 NVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL-GKSLDFIIDTASGDHPFDAY 261
            V   +  ++ K EA   LGA + +          +KA  G+ +D I+D     + F+  
Sbjct: 194 EVYA-TAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAY-FERN 251

Query: 262 MSLLKVAGVYVLVGFPSKVKFSPASLNIG 290
           ++ L   G   ++ F          +N+ 
Sbjct: 252 IASLAKDGCLSIIAFLGGAV--AEKVNLS 278

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 51/242 (21%), Positives = 87/242 (35%), Gaps = 43/242 (17%)

Query: 55  RNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHC 114
           R+   D     V G++  GIV  VG +V+ F+ GD V                       
Sbjct: 73  RSTPPDGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEV----------------------- 109

Query: 115 ARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY----- 169
                 F A         G  + + +V ER   +       A AA L    IT +     
Sbjct: 110 ------FYAGSIIRP---GTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFD 160

Query: 170 TPMMRHKMNQPGKSLGVI-GLGGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLLGAD 227
              +   +     ++ ++ G GG+G +AV+  +    ++TV++T S  + +E +  LGA 
Sbjct: 161 RLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKSLGAH 219

Query: 228 KFV--VSSDLEQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSP 284
             +        ++ ALG  +  F+  T   D        L+   G + L+  PS      
Sbjct: 220 HVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIML 279

Query: 285 AS 286
             
Sbjct: 280 FK 281

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 89.0 bits (221), Expect = 2e-20
 Identities = 38/250 (15%), Positives = 70/250 (28%), Gaps = 47/250 (18%)

Query: 59  GDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSV 118
             +      G +  G V  VG +V+  +VGD V                           
Sbjct: 58  QFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRV--------------------------- 90

Query: 119 YTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN 178
           Y         T  +G +S Y V   R   KI        AA L     T    M    + 
Sbjct: 91  YGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLP 150

Query: 179 QPGKSLGVI-------------GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG 225
            P  S                 G      + ++  +  G     ++T +    +     G
Sbjct: 151 LPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY--IPIATCSPHNFDLAKSRG 208

Query: 226 ADKFV--VSSDLEQM--KALGKSLDFIIDTASGDHPFDA-YMSLLKVAGVYVLVGFPSKV 280
           A++     + +L Q        +L + +D  +        + ++ +  G YV +    + 
Sbjct: 209 AEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEH 268

Query: 281 KFSPASLNIG 290
             +   +   
Sbjct: 269 AATRKMVTTD 278

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 52/253 (20%), Positives = 94/253 (37%), Gaps = 47/253 (18%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDS-KYPLVPGHEIVGIVKEVGHNVS-RFKVGDH 90
           G  D+ +     GV  +D+ ++  ++  S K P   G E +G V  +G + S R+ VG  
Sbjct: 52  GDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQA 111

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
           V                                      +  G ++ Y VV       + 
Sbjct: 112 VA------------------------------------YMAPGSFAEYTVVPASIATPVP 135

Query: 151 NDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTV 209
           +  P  L   +  +G T Y  +        GK + V    GG G  A++  K    +V +
Sbjct: 136 SVKPEYLTLLV--SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHV-I 192

Query: 210 LSTSTSKKEEALSLLGADKFVV--SSDL-EQMKAL-GKSLDFIIDTASGDHPFDAYMSLL 265
            + S+ +K   L  LG D+ +   +  +   +K    + +D + ++  G   FD  +  L
Sbjct: 193 GTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAM-FDLAVDAL 251

Query: 266 KVAGVYVLVGFPS 278
              G  +++GF S
Sbjct: 252 ATKGRLIVIGFIS 264

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 46/248 (18%), Positives = 85/248 (34%), Gaps = 52/248 (20%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSK-YPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
              +V + +   G+ +AD +     +      P +PG E+VG+V            G   
Sbjct: 24  EEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EGRRY 72

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                                  A              + +GG +  + V +     +  
Sbjct: 73  ----------------------AA-------------LVPQGGLAERVAVPKGALLPLPE 97

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVL 210
                 AA    + +T Y  + R +  +PG+ + V    G LG  AV+  +A GL V   
Sbjct: 98  GLSPEEAAAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLA- 155

Query: 211 STSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGV 270
           + S  +K      LGA++    +++ +       LD +++   G    +  + LL   G 
Sbjct: 156 AASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVR-GKE-VEESLGLLAHGGR 213

Query: 271 YVLVGFPS 278
            V +G   
Sbjct: 214 LVYIGAAE 221

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 49/252 (19%), Positives = 88/252 (34%), Gaps = 45/252 (17%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHGDSK-YPLVPGHEIVGIVKEVGHNV-SRFKVGDH 90
           G  +V + +    +  AD++  + ++        + G E  G V E+G      +K+GD 
Sbjct: 48  GEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDT 107

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIA 150
                                   A              +  GG + Y+ V E     I 
Sbjct: 108 A----------------------MA-------------LLPGGGQAQYVTVPEGLLMPIP 132

Query: 151 NDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAFGLNVTV 209
               L  AA +  A +T +  +      Q G  + +  GL G+G  A++  +  G    V
Sbjct: 133 EGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLV 192

Query: 210 LSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPFDAYMSL 264
            +  + KK +    LGA            E       G  ++ I+D   G + ++  ++ 
Sbjct: 193 -TAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSY-WEKNVNC 250

Query: 265 LKVAGVYVLVGF 276
           L + G +VL G 
Sbjct: 251 LALDGRWVLYGL 262

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 46/266 (17%)

Query: 21  VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           VL    F       +++ +     G+ + D       +     P   G E  GIV +VG 
Sbjct: 15  VLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGS 74

Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIV 140
            V   K GD V             Y    L                      G YSS   
Sbjct: 75  GVKHIKAGDRVV------------YAQSAL----------------------GAYSSVHN 100

Query: 141 VHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKF 199
           +       +        AA     G+TVY  + +    +P +        GG+G +A ++
Sbjct: 101 IIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW 160

Query: 200 GKAFGLNV--TVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTA 252
            KA G  +  TV    T++K ++    GA + +   +   +E++K +  GK +  + D+ 
Sbjct: 161 AKALGAKLIGTV---GTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSV 217

Query: 253 SGDHPFDAYMSLLKVAGVYVLVGFPS 278
             D  ++  +  L+  G+ V  G  S
Sbjct: 218 GRDT-WERSLDCLQRRGLMVSFGNSS 242

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 64/266 (24%), Positives = 99/266 (37%), Gaps = 46/266 (17%)

Query: 21  VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           VL    F   A G   V +     G+ + D  +    +     P   G E  G+V+ VG 
Sbjct: 15  VLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGD 74

Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIV 140
            V+RFKVGD V             Y    L                      G YS   V
Sbjct: 75  EVTRFKVGDRVA------------YGTGPL----------------------GAYSEVHV 100

Query: 141 VHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKF 199
           + E    K+A+      AA L+  G+TV   + +    +PG+ +      GG+G +A ++
Sbjct: 101 LPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQW 160

Query: 200 GKAFGLNV--TVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTA 252
            KA G  +  TV   S+ +K      LGA + +  S     +++  L  GK    + D  
Sbjct: 161 AKALGAKLIGTV---SSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGV 217

Query: 253 SGDHPFDAYMSLLKVAGVYVLVGFPS 278
             D  +   +  +   G+ V  G  S
Sbjct: 218 GQDT-WLTSLDSVAPRGLVVSFGNAS 242

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 78.8 bits (195), Expect = 7e-17
 Identities = 53/270 (19%), Positives = 91/270 (33%), Gaps = 43/270 (15%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
            G  D  +       C +D+          ++ ++ GHE VG V EVG  V  FK GD V
Sbjct: 22  PGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRV 81

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVY---TFNAIDADGTITKGGYSSYIVVH--ERYC 146
            V   +           G   H    +      N  D       G +  +  V+  +   
Sbjct: 82  -VVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD-------GVFGEFFHVNDADMNL 133

Query: 147 YKIANDYPLALAAPL-----------LCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
             +  + PL  A  +             A I            + G ++ VIG+G +G M
Sbjct: 134 AHLPKEIPLEAAVMIPDMMTTGFHGAELANI------------KLGDTVCVIGIGPVGLM 181

Query: 196 AVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFII 249
           +V      G   +  + +     + AL   GA   +   +   +EQ+     GK +D ++
Sbjct: 182 SVAGANHLGAGRIFAVGSRKHCCDIALE-YGATDIINYKNGDIVEQILKATDGKGVDKVV 240

Query: 250 DTASGDHPFDAYMSLLKVAGVYVLVGFPSK 279
                 H F   + ++K       V +  +
Sbjct: 241 IAGGDVHTFAQAVKMIKPGSDIGNVNYLGE 270

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 59/260 (22%), Positives = 92/260 (35%), Gaps = 53/260 (20%)

Query: 33  GSDDVSITITHCGVCYADVIWTRN----KHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           G   V +  T  GV + D  + R          + P+V G E   +V+EVG  V+ F VG
Sbjct: 27  GPGQVRLRNTAIGVNFLD-TYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVG 85

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           + V              C   L                      G YS   +       K
Sbjct: 86  ERVC------------TCLPPL----------------------GAYSQERLYPAEKLIK 111

Query: 149 IAN--DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAFGL 205
           +    D      A L+  G+T    + +    +PG  + +    GG+GH+ V + +  G 
Sbjct: 112 VPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA 171

Query: 206 NV--TVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFIIDTASGDHPF 258
            V  TV   ST +K E    LG    +  S     E ++ +  GK +D + D+   D   
Sbjct: 172 TVIGTV---STEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDT-L 227

Query: 259 DAYMSLLKVAGVYVLVGFPS 278
              +  L+  G+    G  S
Sbjct: 228 QKSLDCLRPRGMCAAYGHAS 247

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 60/291 (20%), Positives = 105/291 (36%), Gaps = 55/291 (18%)

Query: 21  VLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH 80
           V+    +   ++  +++ I   + GV Y +  + +  +   + P V G E  G V   G 
Sbjct: 22  VIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVAKGK 80

Query: 81  NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIV 140
            V+ F+VGD V                                      I+   ++ Y  
Sbjct: 81  GVTNFEVGDQV------------------------------------AYISNSTFAQYSK 104

Query: 141 VH-ERYCYKI---ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHM 195
           +  +    K+    +D  L L A  L   +T  +        + G  + +    GG+G +
Sbjct: 105 ISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLI 164

Query: 196 AVKFGKAFGLNV--TVLSTSTSKKEEALSLLGADKFVVSSD---LEQMKAL--GKSLDFI 248
             +  K  G +        ST +K +     GA+  + +S    L Q+     GK +D  
Sbjct: 165 LNQLLKMKGAHTIAVA---STDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDAS 221

Query: 249 IDTASGDHPFDAYMSLLKVAGVYVLVGFPSKV--KFSPASLNIGNAPLFRF 297
            D+   D  F+  ++ LK  GV+V  G  S +   FS   L+  N  L R 
Sbjct: 222 FDSVGKDT-FEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRP 271

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 73.4 bits (180), Expect = 6e-15
 Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 44/241 (18%)

Query: 59  GDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSV 118
           G     +  G+E  G+V E G + +   +                              V
Sbjct: 86  GRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT--------------------------V 119

Query: 119 YTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN 178
                           YS Y  +    C  +      A  A      +T    +   ++ 
Sbjct: 120 AAIGG---------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRL- 169

Query: 179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--- 234
           +   +L        LG M  +     G+ + V      ++ + L   GA     ++    
Sbjct: 170 EGHSALVHTAAASNLGQMLNQICLKDGIKL-VNIVRKQEQADLLKAQGAVHVCNAASPTF 228

Query: 235 LEQMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNI-GN 291
           ++ +             D   G       ++ ++ A       +      +   + + G 
Sbjct: 229 MQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGG 288

Query: 292 A 292
            
Sbjct: 289 L 289

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 24/189 (12%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
                 V + +    +C +D          ++  LV GHEI G V E G +V   ++GD 
Sbjct: 30  KKIEHGVILKVVSTNICGSD-QHMVRGRTTAQVGLVLGHEITGEVIEKGRDVENLQIGDL 88

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSS----YIVVH--ER 144
           V    +  +C  C  C +     C           A G +  G ++     Y++V   + 
Sbjct: 89  V-SVPFNVACGRCRSCKEMHTGVCLTVNPARAG-GAYGYVDMGDWTGGQAEYVLVPYADF 146

Query: 145 YCYKIANDYP--LALAAPLLCAGI-------TVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
              K+ +       +      + I        V   +       PG ++ V G G +G  
Sbjct: 147 NLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGV------GPGSTVYVAGAGPVGLA 200

Query: 196 AVKFGKAFG 204
           A    +  G
Sbjct: 201 AAASARLLG 209

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 39/192 (20%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT 95
            V + +    +C +D               V GHEI G V E G +V    +GD V    
Sbjct: 34  AVILKVVSTNICGSD-QHIYRGRFIVPKGHVLGHEITGEVVEKGSDVELMDIGDLV-SVP 91

Query: 96  YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSS----YIVVHERY----CY 147
           +  +C  C  C +     C  ++   +A          G+S     Y++V   Y      
Sbjct: 92  FNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVP--YADYMLL 149

Query: 148 KIANDYPLALAAPLL---------------CAGITVYTPMMRHKMNQPGKSLGVIGLGGL 192
           K  +          L                AG+            +PG  + + G G +
Sbjct: 150 KFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGV------------KPGSHVYIAGAGPV 197

Query: 193 GHMAVKFGKAFG 204
           G  A    +  G
Sbjct: 198 GRCAAAGARLLG 209

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 49/260 (18%)

Query: 22  LSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHN 81
           L         +G  +V I +   GV + D +     +         G E  G+V E G  
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPGVA---SLGSEGAGVVVETGPG 282

Query: 82  VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV 141
           V+    GD V                                      +    +    V 
Sbjct: 283 VTGLAPGDRVMG------------------------------------MIPKAFGPLAVA 306

Query: 142 HERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI-GLGGLGHMAVKFG 200
             R   +I   +  A AA +    +T Y  ++     +PG+SL V    GG+G  A++  
Sbjct: 307 DHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLA 366

Query: 201 KAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL---EQMKAL--GKSLDFIIDTASGD 255
           +  G    V +T++  K +A+  L  +    S      +Q      G+ +D ++++ +G+
Sbjct: 367 RHLGA--EVYATASEDKWQAVE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGE 423

Query: 256 HPFDAYMSLLKVAGVYVLVG 275
              DA + +L   G ++ +G
Sbjct: 424 F-ADASLRMLPRGGRFLELG 442

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 43/226 (19%), Positives = 69/226 (30%), Gaps = 38/226 (16%)

Query: 36  DVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           DV++ +    + Y D +    K      +P++PG +  G V        RF  G  V + 
Sbjct: 29  DVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASED--PRFHAGQEVLLT 86

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
            +            G+                 G    GG +    V   +   +     
Sbjct: 87  GW------------GV-----------------GENHWGGLAERARVKGDWLVALPAGLS 117

Query: 155 LALAAPLLCAGIT----VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVL 210
              A  +  AG T    V          Q G+ +     GG+G  AV      G  V   
Sbjct: 118 SRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAA- 176

Query: 211 STSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL-DFIIDTASGD 255
            +        L  LGA++ +   +  + + L K L    IDT    
Sbjct: 177 VSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK 222

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 52/228 (22%), Positives = 80/228 (35%), Gaps = 40/228 (17%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSK-YPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
            V I + + G+ Y D +  +      + YPL+ G +  G V        RF  GD V   
Sbjct: 33  GVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSND--PRFAEGDEVIAT 90

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
           +Y             L                 G    GG S Y  V   +   +  +  
Sbjct: 91  SY------------EL-----------------GVSRDGGLSEYASVPGDWLVPLPQNLS 121

Query: 155 LALAAPLLCAGITV---YTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVL 210
           L  A     AG T       + ++ ++    S+ V G  GG+G +AV      G +V   
Sbjct: 122 LKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVA- 180

Query: 211 STSTSKKEEALSLLGADKFVVSSDL--EQMKALGKSL-DFIIDTASGD 255
           ST   +  + L  LGA + +   D+    +KAL K      +D   G 
Sbjct: 181 STGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK 228

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 53/228 (23%), Positives = 84/228 (36%), Gaps = 40/228 (17%)

Query: 36  DVSITITHCGVCYADVIWTRNKHGDSK-YPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG 94
           DV + + +  V Y D + +       K YP VPG ++ G+V    H   RF+ GD V   
Sbjct: 32  DVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSSQH--PRFREGDEVIAT 89

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
            Y             +                 G    GGYS Y  +H  +   +     
Sbjct: 90  GY------------EI-----------------GVTHFGGYSEYARLHGEWLVPLPKGLT 120

Query: 155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI----GLGGLGHMAVKFGKAFGLNVTVL 210
           L  A  +  AG T    + R + +      G +      GG+G +AV      G  V   
Sbjct: 121 LKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEA- 179

Query: 211 STSTSKKEEALSLLGADKFVVSSDL--EQMKALGKSL-DFIIDTASGD 255
           ST  + + + L +LGA + +   D+  E+++ L K      +D   G 
Sbjct: 180 STGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR 227

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV 231
           +        G ++ V+GLG +G    +   A G  V V +  +         +G + F  
Sbjct: 146 IQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE-MGMEPF-- 202

Query: 232 SSDLEQMKALGKSLDFIIDTA 252
              + +     + +D  I+T 
Sbjct: 203 --HISKAAQELRDVDVCINTI 221

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 50/254 (19%)

Query: 29   RRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
                   D   ++ +  + + DV+    K        +PG  +            R   G
Sbjct: 1554 ALPASCQDRLCSVYYTSLNFRDVMLATGKLSP---DSIPGKWLTRDCMLGMEFSGRDASG 1610

Query: 89   DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
              V                                    G +   G ++ +++ +   ++
Sbjct: 1611 RRVM-----------------------------------GMVPAEGLATSVLLLQHATWE 1635

Query: 149  IANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV-IGLGGLGHMAVKFGKAFGLNV 207
            + + + L  AA +     T Y  ++     QPG+S+ +  G GG+G  A+    + G  V
Sbjct: 1636 VPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRV 1695

Query: 208  TVLSTSTSKKEEALSL----LGADKFVVSSDL--EQM---KALGKSLDFIIDTASGDHPF 258
               +  +++K   L      L    F  S D   EQ       GK +D ++++ + +   
Sbjct: 1696 FT-TVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEK-L 1753

Query: 259  DAYMSLLKVAGVYV 272
             A +  L   G ++
Sbjct: 1754 QASVRCLAQHGRFL 1767

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 20/91 (21%)

Query: 159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKE 218
            P    G  VY           GK++G+IGLG +G    K  K F +   +L  S ++KE
Sbjct: 139 HPKWFLGYDVY-----------GKTIGIIGLGRIGQAIAKRAKGFNMR--ILYYSRTRKE 185

Query: 219 EALSLLGADKFVVSSDLEQMKALGKSLDFII 249
           E    L A +F     LE +  L +S DF++
Sbjct: 186 EVERELNA-EFK---PLEDL--LRES-DFVV 209

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
             ++G+IGLG +G    +  K FG+    L T    + E  +   A +FV      ++  
Sbjct: 155 QSTVGIIGLGRIGQAIARRLKPFGVQR-FLYTGRQPRPEEAAEFQA-EFV---STPEL-- 207

Query: 241 LGKSLDFII 249
             +S DFI+
Sbjct: 208 AAQS-DFIV 215

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA 240
           G+ L + G G +G        A G++V  ++T+    +         + V  +      A
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD------HFHETVAFTATAD--A 188

Query: 241 LGKSLDFIIDTA 252
           L  + +FI++  
Sbjct: 189 LATA-NFIVNAL 199

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 46/177 (25%)

Query: 104 EYCNDGLEVHCARSVYTF--NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPL 161
           ++  + L ++     Y F  + I  +          YI   +R      ND  +   A  
Sbjct: 81  KFVEEVLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVF--AKY 129

Query: 162 LCAGITVYTPMMRHKMN------QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS 215
                 V       K+       +P K++ + G+ G        GK      T ++    
Sbjct: 130 -----NVSRLQPYLKLRQALLELRPAKNVLIDGVLG-------SGK------TWVALDVC 171

Query: 216 KKEEALSLLGADKFVVS--------SDLEQMKALGKSLDFIIDTASGDHPFDAYMSL 264
              +    +    F ++        + LE ++ L   +D    T+  DH  +  + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRI 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.94
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.81
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.15
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.06
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.95
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.95
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.88
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.86
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.74
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.65
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.46
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.43
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.3
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.18
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.18
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.15
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.14
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.08
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.06
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.03
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.99
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.92
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.88
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.88
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.87
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.87
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.83
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.71
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.68
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.66
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.66
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.65
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.63
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.63
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.6
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.6
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.59
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.58
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.57
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.57
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.56
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.56
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.55
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.54
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.53
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.53
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.5
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.5
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.48
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.48
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.48
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.47
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.47
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.45
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.43
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.43
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.42
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.42
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.42
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.42
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.42
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.42
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.41
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.41
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.41
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.41
1spx_A	278	Short-chain reductase family member (5L265); paral	97.4
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.4
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.4
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.4
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.39
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.39
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.38
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.38
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.38
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.38
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.36
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.35
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.35
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.35
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.35
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.35
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.34
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.34
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.34
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.33
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.33
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.33
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.32
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.32
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.3
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.3
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.29
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.29
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.28
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.28
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.27
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.27
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.27
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.27
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.27
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.26
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.26
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.26
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.25
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.25
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.25
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.25
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.24
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.24
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.24
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.23
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.23
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.23
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.22
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.22
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.21
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.21
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.21
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.21
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.2
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.2
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.2
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.2
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.2
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.2
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.2
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.19
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.19
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.19
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.19
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.19
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.19
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.19
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.18
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.18
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.18
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.17
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.17
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.17
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.17
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.17
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.17
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.17
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.17
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.16
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.16
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.16
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.16
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.16
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.15
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.15
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.15
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.15
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.14
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.13
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.13
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.12
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.12
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.12
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.11
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.11
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.11
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.1
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.1
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.09
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.09
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.08
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.08
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.08
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.07
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.07
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.07
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.07
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.07
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.07
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.07
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.06
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.06
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.05
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.05
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.04
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.04
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.03
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.03
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.03
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.02
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.02
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.01
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.01
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.01
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.01
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.01
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.0
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.0
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.0
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.99
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.98
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.98
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.97
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.97
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.97
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.97
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.97
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.97
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.97
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.96
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.96
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.96
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.96
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.95
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.95
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.95
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.95
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.94
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.94
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.94
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.94
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.94
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.93
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.93
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.93
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.93
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.93
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.92
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.92
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.92
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.92
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.91
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.91
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.91
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.91
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.91
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.9
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.9
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.88
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.88
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.88
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.87
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.87
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.86
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.86
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.86
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.86
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.86
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.86
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.85
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.82
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.82
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.81
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.8
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.8
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.8
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.8
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.79
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.78
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.78
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.78
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.77
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.77
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.77
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.77
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.76
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.75
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.74
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.74
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.73
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.73
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.72
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.72
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.71
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.7
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.7
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.7
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.69
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.68
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.66
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.66
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.65
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.65
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.64
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.63
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.63
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.63
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.62
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.62
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.62
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.62
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.62
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.61
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.61
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.61
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.6
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.59
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.58
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.57
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.57
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.57
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.57
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.57
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.57
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.57
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.57
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.57
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.56
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.56
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.54
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.53
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.53
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.53
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.52
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.52
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.51
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.49
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.49
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.48
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.47
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.47
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.47
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.47
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.46
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.46
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.46
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.45
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.44
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.43
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.43
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.43
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.42
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.42
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.41
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.41
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.4
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.4
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.4
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.4
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.4
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.4
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.39
2o07_A	304	Spermidine synthase; structural genomics, structur	96.39
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.39
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.38
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.38
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.38
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.38
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.37
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.37
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.36
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.33
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.33
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.33
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.33
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.32
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.32
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.32
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.3
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.28
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.28
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.27
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.27
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.27
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.26
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.23
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.23
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.22
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.21
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.21
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.21
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.2
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.19
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.18
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.17
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.17
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.16
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.15
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.15
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.15
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.14
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.14
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.14
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.14
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.13
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.13
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.13
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.12
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.11
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.1
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.09
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.09
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.09
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.08
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.07
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.06
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.05
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.03
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.02
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.02
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.01
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.01
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.01
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.0
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.0
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.99
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.99
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.99
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.97
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.96
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.94
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.94
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.94
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.94
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.92
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	95.91
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.91
2esr_A	177	Methyltransferase; structural genomics, hypothetic	95.9
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.9
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.89
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.89
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.88
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.87
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.86
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.85
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.85
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.84

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=2.6e-53  Score=383.84  Aligned_cols=296  Identities=45%  Similarity=0.838  Sum_probs=257.9

Q ss_pred             CCcccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecC
Q 022313            1 MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH   80 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~   80 (299)
                      |..|+.+|+++++...+.++.+++.+++.|++.++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+
T Consensus         1 ~~~m~~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~   80 (357)
T 2cf5_A            1 MGIMEAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGS   80 (357)
T ss_dssp             -----CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECS
T ss_pred             CccccCcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECC
Confidence            67899999999999988888899999999999999999999999999999999988765456799999999999999999


Q ss_pred             CCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccc
Q 022313           81 NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAP  160 (299)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~  160 (299)
                      ++++|++||+|.+.+...+|+.|.+|+++.++.|.+..+.+.+....|....|+|+||+.+|++.++++|+++++++||+
T Consensus        81 ~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~  160 (357)
T 2cf5_A           81 DVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAP  160 (357)
T ss_dssp             SCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTG
T ss_pred             CCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhh
Confidence            99999999999877766789999999999999997654433332223444679999999999999999999999999999


Q ss_pred             cchhhHHHHHHhhhccCCC-CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH
Q 022313          161 LLCAGITVYTPMMRHKMNQ-PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK  239 (299)
Q Consensus       161 ~~~~~~ta~~al~~~~~~~-~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  239 (299)
                      +++++.|+|+++..... + +|++|||+|+|++|++++|+|+..|++|+++++++++++.+++++|+++++++.+.+.+.
T Consensus       161 l~~~~~ta~~~l~~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  239 (357)
T 2cf5_A          161 LLCAGVTVYSPLSHFGL-KQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMS  239 (357)
T ss_dssp             GGTHHHHHHHHHHHTST-TSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHH
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHH
Confidence            99999999999987654 7 999999999999999999999999999999999999988885589999999988877777


Q ss_pred             HhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Ccee-eChhhhhcCCeeeeeec
Q 022313          240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVK-FSPASLNIGNAPLFRFK  298 (299)
Q Consensus       240 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~-~~~~~l~~~~~~~~g~~  298 (299)
                      ++.+++|+|||++|+...++.++++++++|+++.+|.. .... +++. ++.|++++.|+.
T Consensus       240 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~  299 (357)
T 2cf5_A          240 ELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSF  299 (357)
T ss_dssp             HSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECC
T ss_pred             HhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEc
Confidence            77789999999999875689999999999999999987 4444 6666 888999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=4.2e-51  Score=370.50  Aligned_cols=292  Identities=51%  Similarity=0.849  Sum_probs=260.0

Q ss_pred             ccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCc
Q 022313            6 ASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      .+|+++++...+.++.+++.+++.|++.++||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++|
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   92 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKV   92 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcC
Confidence            47889999988788889999999999999999999999999999999998876545679999999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||+|++.+....|+.|.+|+++.+++|.+..+.+.+....|....|+|+||+.+|++.++++|+++++++||++++++
T Consensus        93 ~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~  172 (366)
T 1yqd_A           93 NVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAG  172 (366)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHH
T ss_pred             CCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhH
Confidence            99999987666668999999999999999765443333322344467999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCC-CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCC
Q 022313          166 ITVYTPMMRHKMNQ-PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       166 ~ta~~al~~~~~~~-~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  244 (299)
                      .|+|+++..... + +|++|||+|+|++|++++|+|+..|++|+++++++++.+.+++++|+++++++.+.+.+.++.++
T Consensus       173 ~ta~~al~~~~~-~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~  251 (366)
T 1yqd_A          173 ITVYSPLKYFGL-DEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGT  251 (366)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTC
T ss_pred             HHHHHHHHhcCc-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCC
Confidence            999999987654 7 99999999999999999999999999999999999999888669999999998887777777789


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +|+|||++|....++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       252 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  306 (366)
T 1yqd_A          252 LDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSG  306 (366)
T ss_dssp             EEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEECC
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEec
Confidence            999999999875589999999999999999988 666788889999999999864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=5.5e-50  Score=364.14  Aligned_cols=292  Identities=25%  Similarity=0.360  Sum_probs=250.1

Q ss_pred             CCcccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecC
Q 022313            1 MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH   80 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~   80 (299)
                      |.+.+.||+|+++.+....+++++++++.|++.++||||||++++||++|++.+.|.++ ..+|.++|||++|+|+++|+
T Consensus         1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~   79 (373)
T 1p0f_A            1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGA   79 (373)
T ss_dssp             -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECT
T ss_pred             CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECC
Confidence            77788899999999866555799999999999999999999999999999999988765 56799999999999999999


Q ss_pred             CCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccc-cccCCC-------------CccCCcceeeEEeecceE
Q 022313           81 NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFN-AIDADG-------------TITKGGYSSYIVVHERYC  146 (299)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~-~~~~~g-------------~~~~g~~~~~~~~~~~~~  146 (299)
                      ++++|++||+|++.+. .+|+.|.+|+++.++.|.+.....+ |...+|             ....|+|+||+.+|++.+
T Consensus        80 ~v~~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           80 GVTCVKPGDKVIPLFV-PQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TCCSCCTTCEEEECSS-CCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCccCCCCEEEECCC-CCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhE
Confidence            9999999999988765 4899999999999999997643210 111111             113599999999999999


Q ss_pred             EEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC
Q 022313          147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG  225 (299)
Q Consensus       147 ~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g  225 (299)
                      +++|++++++ ||.+++++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lG  236 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IELG  236 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHTT
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcC
Confidence            9999999999 999999999999998766667999999999999999999999999999 899999999999888 6999


Q ss_pred             CCEEEeCCC-----HHHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC---CceeeChhhhhcCCeeee
Q 022313          226 ADKFVVSSD-----LEQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP---SKVKFSPASLNIGNAPLF  295 (299)
Q Consensus       226 ~~~v~~~~~-----~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~---~~~~~~~~~l~~~~~~~~  295 (299)
                      +++++++.+     .+.+.+++ +++|+|||++|+...++.++++++++ |+++.+|..   ...++++..++.++ ++.
T Consensus       237 a~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~  315 (373)
T 1p0f_A          237 ATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLK  315 (373)
T ss_dssp             CSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEE
T ss_pred             CcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEE
Confidence            999998763     13344443 58999999999876799999999999 999999987   25678888888888 888


Q ss_pred             ee
Q 022313          296 RF  297 (299)
Q Consensus       296 g~  297 (299)
                      |+
T Consensus       316 g~  317 (373)
T 1p0f_A          316 GS  317 (373)
T ss_dssp             EC
T ss_pred             ee
Confidence            85

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-50  Score=367.19  Aligned_cols=292  Identities=42%  Similarity=0.690  Sum_probs=250.2

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      ...|+++++....+.+.+++++++.|++.++||||||++++||++|++.+.|.++...+|.++|||++|+|+++|+++++
T Consensus        18 ~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   97 (369)
T 1uuf_A           18 KAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEK   97 (369)
T ss_dssp             -----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             hcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCC
Confidence            35678888888666688999999999999999999999999999999999887654567999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCcccccccccccccc-CCCCccCCcceeeEEeecceEEEcCCC-CCcccccccc
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID-ADGTITKGGYSSYIVVHERYCYKIAND-YPLALAAPLL  162 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~p~~-~~~~~aa~~~  162 (299)
                      |++||+|++.+....|+.|.+|++|.+++|++....+.+.. ..|....|+|+||+.+|++.++++|++ +++++||+++
T Consensus        98 ~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~  177 (369)
T 1uuf_A           98 YAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLL  177 (369)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGG
T ss_pred             CCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhh
Confidence            99999999887777899999999999999997632221111 012245699999999999999999999 9999999999


Q ss_pred             hhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhc
Q 022313          163 CAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALG  242 (299)
Q Consensus       163 ~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  242 (299)
                      +++.|||+++... .+++|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+.+.+.++.
T Consensus       178 ~~~~tA~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~  255 (369)
T 1uuf_A          178 CAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALGADEVVNSRNADEMAAHL  255 (369)
T ss_dssp             THHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEETTCHHHHHTTT
T ss_pred             hhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCcEEeccccHHHHHHhh
Confidence            9999999999876 56999999999999999999999999999999999999999888 589999999988876666666


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cce-eeChhhhhcCCeeeeeec
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKV-KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~-~~~~~~l~~~~~~~~g~~  298 (299)
                      +++|+|||++|+...++.++++++++|+++.+|.. ... ++++..++.|++++.|+.
T Consensus       256 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  313 (369)
T 1uuf_A          256 KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSM  313 (369)
T ss_dssp             TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECC
T ss_pred             cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEee
Confidence            79999999999876689999999999999999988 444 688888999999999864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-50  Score=367.21  Aligned_cols=291  Identities=24%  Similarity=0.394  Sum_probs=246.9

Q ss_pred             ccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313            4 ETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      |+++|+|+++.+.+..+++++++.+.|++.++||+|||++++||++|++++.|.++ ..+|.++|||++|+|+++|++++
T Consensus         1 ms~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~   79 (371)
T 1f8f_A            1 MSELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVT   79 (371)
T ss_dssp             ---CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCccccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCC
Confidence            56667788888865555699999999999999999999999999999999988664 45799999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccc-ccccc---------CCC------CccCCcceeeEEeecceEE
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAID---------ADG------TITKGGYSSYIVVHERYCY  147 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~---------~~g------~~~~g~~~~~~~~~~~~~~  147 (299)
                      +|++||+|++.+  .+|+.|.+|++|++++|.+.... +.|..         .+|      ....|+|+||+.+|++.++
T Consensus        80 ~~~~GdrV~~~~--~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~  157 (371)
T 1f8f_A           80 ELQVGDHVVLSY--GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTV  157 (371)
T ss_dssp             SCCTTCEEEECC--CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEE
T ss_pred             CCCCCCEEEecC--CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheE
Confidence            999999998877  58999999999999999875421 11110         011      0235999999999999999


Q ss_pred             EcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC
Q 022313          148 KIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA  226 (299)
Q Consensus       148 ~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~  226 (299)
                      ++|+++++++||++++++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+
T Consensus       158 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa  236 (371)
T 1f8f_A          158 KVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQLGA  236 (371)
T ss_dssp             EECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHHTC
T ss_pred             ECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcCC
Confidence            9999999999999999999999999666667999999999999999999999999999 799999999888888 79999


Q ss_pred             CEEEeCCCHH---HHHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeeec
Q 022313          227 DKFVVSSDLE---QMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       227 ~~v~~~~~~~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++++++.+.+   .+.+.. +++|+|||++|+...++.++++++++|+++.+|..   ...++++..++.|++++.|+.
T Consensus       237 ~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~  315 (371)
T 1f8f_A          237 THVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVV  315 (371)
T ss_dssp             SEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECS
T ss_pred             CEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeC
Confidence            9999887543   344443 48999999999876689999999999999999987   246788888899999999863

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=8.9e-51  Score=366.07  Aligned_cols=284  Identities=38%  Similarity=0.699  Sum_probs=247.3

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |+|+++.+...++.+++++.+.|+++++||||||+++++|++|++.+.|.++..++|.++|||++|+|+++|+++++|++
T Consensus         3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~~v   82 (348)
T 3two_A            3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKFKI   82 (348)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCCCC
Confidence            56788888777788999999999999999999999999999999999998776778999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccc--cCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAI--DADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ||+|++.+...+|+.|.+|++|.+++|......+...  ...|....|+|+||+.+|++.++++|+++++++||++++++
T Consensus        83 GdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~  162 (348)
T 3two_A           83 GDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAG  162 (348)
T ss_dssp             TCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHH
T ss_pred             CCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhhhH
Confidence            9999887776799999999999999998322211111  01123345999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCc
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  245 (299)
                      .|+|+++... .+++|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|+++++  .+.+   ++..++
T Consensus       163 ~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~v~--~~~~---~~~~~~  235 (348)
T 3two_A          163 ITTYSPLKFS-KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA-LSMGVKHFY--TDPK---QCKEEL  235 (348)
T ss_dssp             HHHHHHHHHT-TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-HHTTCSEEE--SSGG---GCCSCE
T ss_pred             HHHHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HhcCCCeec--CCHH---HHhcCC
Confidence            9999999877 55999999999999999999999999999999999999999988 689999998  3332   233499


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--Ccee-eChhhhh-cCCeeeeeec
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVK-FSPASLN-IGNAPLFRFK  298 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~-~~~~~l~-~~~~~~~g~~  298 (299)
                      |+|||++|+...++.++++++++|+++.+|..  ...+ +++..++ .|++++.|+.
T Consensus       236 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~  292 (348)
T 3two_A          236 DFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSL  292 (348)
T ss_dssp             EEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEe
Confidence            99999999986699999999999999999987  3444 7777888 9999999974

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=9.2e-51  Score=367.56  Aligned_cols=290  Identities=34%  Similarity=0.616  Sum_probs=247.4

Q ss_pred             cccceEEeeeCCCCccccee--eecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC-
Q 022313            7 SKDCLGWAARDPSGVLSPYS--FNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS-   83 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~-   83 (299)
                      +.+|+++.+....+++++++  .+.|++.++||||||++++||++|++.+.|.++...+|.++|||++|+|+++|++++ 
T Consensus         4 p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~~   83 (360)
T 1piw_A            4 PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSNS   83 (360)
T ss_dssp             TTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred             ChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCCC
Confidence            33456666654445689999  999999999999999999999999999988765556799999999999999999999 


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      +|++||+|++.+....|+.|.+|++|.+++|.+....+.+....|....|+|+||+.+|++.++++|+++++++||++++
T Consensus        84 ~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  163 (360)
T 1piw_A           84 GLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLC  163 (360)
T ss_dssp             SCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGT
T ss_pred             CCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhhhhh
Confidence            99999999877666689999999999999998751111111111334569999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH-HHHHHhc
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL-EQMKALG  242 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~  242 (299)
                      ++.|||+++... .+++|++|||+|+|++|++++|+|+..|++|+++++++++++.+ +++|+++++++.+. +...++.
T Consensus       164 ~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~-~~lGa~~v~~~~~~~~~~~~~~  241 (360)
T 1piw_A          164 GGLTVYSPLVRN-GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA-MKMGADHYIATLEEGDWGEKYF  241 (360)
T ss_dssp             HHHHHHHHHHHT-TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEEGGGTSCHHHHSC
T ss_pred             hHHHHHHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCCEEEcCcCchHHHHHhh
Confidence            999999999874 56999999999999999999999999999999999999999888 68999999988765 5555555


Q ss_pred             CCccEEEEcCCC--chhHHHHHHhcccCcEEEEEcCCCce-eeChhhhhcCCeeeeeec
Q 022313          243 KSLDFIIDTASG--DHPFDAYMSLLKVAGVYVLVGFPSKV-KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 ~~~d~v~d~~g~--~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~l~~~~~~~~g~~  298 (299)
                      +++|+|||++|+  ...++.++++++++|+++.+|..... .+++..++.|++++.|+.
T Consensus       242 ~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  300 (360)
T 1piw_A          242 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSA  300 (360)
T ss_dssp             SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECC
T ss_pred             cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCCccccCHHHHHhCCeEEEEEe
Confidence            789999999998  55588999999999999999988324 577778899999999864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=4.7e-50  Score=360.26  Aligned_cols=280  Identities=29%  Similarity=0.465  Sum_probs=248.8

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      |+++.+...++++++++.+.|++.++||||||+++++|++|++.+.|.++. .++|.++|||++|+|+++|+++++|++|
T Consensus         3 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~vG   82 (340)
T 3s2e_A            3 MKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKEG   82 (340)
T ss_dssp             EEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCTT
T ss_pred             eEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCCC
Confidence            455555555566999999999999999999999999999999999987763 4689999999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|++......|+.|.+|+++++++|.+....       |....|+|+||+.+|++.++++|+++++++||++++++.|+
T Consensus        83 drV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  155 (340)
T 3s2e_A           83 DRVGVPWLYSACGYCEHCLQGWETLCEKQQNT-------GYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV  155 (340)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHH
T ss_pred             CEEEecCCCCCCCCChHHhCcCcccCcccccc-------CCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHH
Confidence            99976555569999999999999999986543       33467999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhcCCc
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALGKSL  245 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~  245 (299)
                      |++++.. .+++|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+.+.   +.+..+++
T Consensus       156 ~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~g~~  233 (340)
T 3s2e_A          156 YKGLKVT-DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGA  233 (340)
T ss_dssp             HHHHHTT-TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHHSSE
T ss_pred             HHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHcCCCEEEeCCCcCHHHHHHHhCCCC
Confidence            9999655 55999999999999999999999999999999999999999888 7899999999876433   33333689


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      |++||++++...++.++++++++|+++.+|.. ...+++...++.|++++.|+.
T Consensus       234 d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  287 (340)
T 3s2e_A          234 HGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSI  287 (340)
T ss_dssp             EEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             CEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEe
Confidence            99999999888899999999999999999988 778888999999999999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-49  Score=362.24  Aligned_cols=290  Identities=24%  Similarity=0.363  Sum_probs=247.1

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      ..+++|+++.+....+++++++++.|++.++||||||++++||++|++++.|..+..++|.++|||++|+|+++|+++++
T Consensus         4 ~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~   83 (378)
T 3uko_A            4 GQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTE   83 (378)
T ss_dssp             TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             ccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCCCc
Confidence            34566777777666566999999999999999999999999999999999998776778999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCcccccccccc-cccc-C--------CC-----CccCCcceeeEEeecceEEEc
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAID-A--------DG-----TITKGGYSSYIVVHERYCYKI  149 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~-~--------~g-----~~~~g~~~~~~~~~~~~~~~~  149 (299)
                      |++||+|++.+. .+|+.|.+|+++.+++|.+..... .|.. .        +|     ....|+|+||+.+|++.++++
T Consensus        84 ~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  162 (378)
T 3uko_A           84 VQAGDHVIPCYQ-AECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKI  162 (378)
T ss_dssp             CCTTCEEEECSS-CCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEecC-CCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEEC
Confidence            999999987655 589999999999999999864311 1110 0        11     122479999999999999999


Q ss_pred             CCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCE
Q 022313          150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       150 p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      |+++++++||.+++++.|+|+++.+...+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++
T Consensus       163 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~  241 (378)
T 3uko_A          163 DPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKFGVNE  241 (378)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTTTCCE
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCcE
Confidence            99999999999999999999998777777999999999999999999999999999 899999999999887 7999999


Q ss_pred             EEeCC--CH---HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          229 FVVSS--DL---EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       229 v~~~~--~~---~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++.  +.   +.+.++. +++|+|||++|+...++.++++++++ |+++.+|..   ...++++..++. +++++|+
T Consensus       242 vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i~g~  319 (378)
T 3uko_A          242 FVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGT  319 (378)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEEEEC
T ss_pred             EEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhc-CcEEEEE
Confidence            99876  22   3344443 58999999999977799999999996 999999986   456677776664 8888875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=4.2e-49  Score=358.72  Aligned_cols=290  Identities=22%  Similarity=0.331  Sum_probs=247.7

Q ss_pred             ccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313            4 ETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      -++||+|+++.+....+++++++.+.|++.++||+|||++++||++|++.+.|. +...+|.++|||++|+|+++|++++
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            356788888888665557999999999999999999999999999999998886 4356799999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccc----ccc-ccccCCC-------------CccCCcceeeEEeecce
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSV----YTF-NAIDADG-------------TITKGGYSSYIVVHERY  145 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~----~~~-~~~~~~g-------------~~~~g~~~~~~~~~~~~  145 (299)
                      +|++||+|++.+. .+|+.|.+|++++++.|.+..    ... .|...+|             ....|+|+||+.+|++.
T Consensus        82 ~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~  160 (376)
T 1e3i_A           82 NFKPGDKVIPFFA-PQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEAN  160 (376)
T ss_dssp             SCCTTCEEEECSS-CCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             cCCCCCEEEECCc-CCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEecccc
Confidence            9999999988665 489999999999999998754    100 1111111             11249999999999999


Q ss_pred             EEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc
Q 022313          146 CYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL  224 (299)
Q Consensus       146 ~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  224 (299)
                      ++++|+++++++||.+++++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++
T Consensus       161 ~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l  239 (376)
T 1e3i_A          161 LARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL  239 (376)
T ss_dssp             EEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT
T ss_pred             EEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh
Confidence            999999999999999999999999998766667999999999999999999999999999 899999999999888 699


Q ss_pred             CCCEEEeCCC--H---HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          225 GADKFVVSSD--L---EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       225 g~~~v~~~~~--~---~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                      |+++++++.+  .   +.+.++. +++|+|||++|+...++.++++++++ |+++.+|.. ...++++..++.|+ +++|
T Consensus       240 Ga~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g  318 (376)
T 1e3i_A          240 GATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SING  318 (376)
T ss_dssp             TCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEE
T ss_pred             CCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEEE
Confidence            9999998763  1   2344432 58999999999876689999999999 999999987 66778888888888 9988


Q ss_pred             e
Q 022313          297 F  297 (299)
Q Consensus       297 ~  297 (299)
                      +
T Consensus       319 ~  319 (376)
T 1e3i_A          319 T  319 (376)
T ss_dssp             C
T ss_pred             E
Confidence            5

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=6.2e-49  Score=357.32  Aligned_cols=290  Identities=23%  Similarity=0.332  Sum_probs=247.5

Q ss_pred             ccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313            4 ETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      -.+||+|+++.+....+.+++++.+.|++.++||+|||++++||++|++++.|.++. .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC-CCCcccCcCceEEEEEECCCCC
Confidence            456778888888665557999999999999999999999999999999999887653 3799999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccc-cccCCC-------------CccCCcceeeEEeecceEEEc
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFN-AIDADG-------------TITKGGYSSYIVVHERYCYKI  149 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~-~~~~~g-------------~~~~g~~~~~~~~~~~~~~~~  149 (299)
                      +|++||+|++.+. .+|+.|.+|+++++++|.+...... |...+|             ....|+|+||+.+|++.++++
T Consensus        82 ~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  160 (374)
T 2jhf_A           82 TVRPGDKVIPLFT-PQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (374)
T ss_dssp             SCCTTCEEEECSS-CCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCC-CCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEEC
Confidence            9999999988665 4899999999999999997643210 111111             113599999999999999999


Q ss_pred             CCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCE
Q 022313          150 ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       150 p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      |+++++++||.+++++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+++
T Consensus       161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~  239 (374)
T 2jhf_A          161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEVGATE  239 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSE
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCce
Confidence            99999999999999999999998766667999999999999999999999999999 899999999999888 6999999


Q ss_pred             EEeCCC-----HHHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          229 FVVSSD-----LEQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       229 v~~~~~-----~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++.+     .+.+.++. +++|+|||++|+...++.++++++++ |+++.+|..   ...++++..++.|+ ++.|+
T Consensus       240 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~  317 (374)
T 2jhf_A          240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGA  317 (374)
T ss_dssp             EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEEC
T ss_pred             EecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEe
Confidence            998763     23344443 48999999999977789999999999 999999987   25678888888888 99885

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=3.8e-49  Score=358.61  Aligned_cols=290  Identities=24%  Similarity=0.335  Sum_probs=247.3

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      .++|+|+++.+....+++++++.+.|++.++||+|||++++||++|++++.|.++...+|.++|||++|+|+++|+++++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            35677888888665557999999999999999999999999999999999887654567999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccc-cccCCC-------------CccCCcceeeEEeecceEEEcC
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFN-AIDADG-------------TITKGGYSSYIVVHERYCYKIA  150 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~-~~~~~g-------------~~~~g~~~~~~~~~~~~~~~~p  150 (299)
                      |++||+|++.+. .+|+.|.+|+++.++.|.+.....+ |...+|             ....|+|+||+.+|++.++++|
T Consensus        82 ~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           82 LKAGDTVIPLYI-PQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             CCTTCEEEECSS-CCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCC-CCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECC
Confidence            999999988665 4899999999999999987532110 111111             1135999999999999999999


Q ss_pred             CCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEE
Q 022313          151 NDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKF  229 (299)
Q Consensus       151 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v  229 (299)
                      +++++++||.+++++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|++++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~v  239 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEFGATEC  239 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHHTCSEE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceE
Confidence            9999999999999999999998766667999999999999999999999999999 899999999999888 68999999


Q ss_pred             EeCCC-----HHHHHHhc-CCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-C--ceeeChhhhhcCCeeeeee
Q 022313          230 VVSSD-----LEQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-S--KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       230 ~~~~~-----~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~  297 (299)
                      +++.+     .+.+.++. +++|+|||++|+...++.++++++++ |+++.+|.. .  ..++++..++.++ +++|+
T Consensus       240 i~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~  316 (373)
T 2fzw_A          240 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGT  316 (373)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEEC
T ss_pred             eccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEe
Confidence            98763     13344443 48999999999976789999999999 999999987 2  5678888888888 99885

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.9e-49  Score=356.29  Aligned_cols=291  Identities=24%  Similarity=0.371  Sum_probs=247.9

Q ss_pred             cccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhh-hhccCCCCCCCCccccccccEEEEEecCC
Q 022313            3 SETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVI-WTRNKHGDSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~-~~~g~~~~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      +...+|+|+++.+....+++++++.+.|++.++||+|||++++||++|++ .+.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            44567788888886555579999999999999999999999999999999 8888665 567999999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCcccccccccc-ccccCCCC-------------ccCCcceeeEEeecceEE
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDADGT-------------ITKGGYSSYIVVHERYCY  147 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~~~g~-------------~~~g~~~~~~~~~~~~~~  147 (299)
                      +++|++||+|++.+. .+|+.|.+|+++++++|.+..... .|...+|.             ...|+|+||+.+|++.++
T Consensus        81 V~~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFI-SQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSS-CCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCC-CCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheE
Confidence            999999999988765 489999999999999999764321 01111111             135999999999999999


Q ss_pred             EcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC
Q 022313          148 KIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA  226 (299)
Q Consensus       148 ~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~  226 (299)
                      ++|+++++++||.+++++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa  238 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA-KVFGA  238 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTC
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHhCC
Confidence            9999999999999999999999998766667999999999999999999999999999 899999999999888 69999


Q ss_pred             CEEEeCCC-----HHHHHHh-cCCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          227 DKFVVSSD-----LEQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       227 ~~v~~~~~-----~~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ++++++.+     .+.+.++ .+++|++||++|+...++.++++++++ |+++.+|..  ...++++..++.++ ++.|+
T Consensus       239 ~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~  317 (374)
T 1cdo_A          239 TDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGS  317 (374)
T ss_dssp             CEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEEC
T ss_pred             ceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEE
Confidence            99998763     1233333 258999999999876689999999999 999999987  36778888888888 88885

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=3.1e-49  Score=358.61  Aligned_cols=279  Identities=21%  Similarity=0.324  Sum_probs=244.3

Q ss_pred             cccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcc
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      +++|+++.+. .++.+++++.+.|+++++||+|||++++||++|++.+.|.++ ..+|.++|||++|+|+++|+++++|+
T Consensus        21 p~~mkA~v~~-~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~   98 (370)
T 4ej6_A           21 QSMMKAVRLE-SVGNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSAVRDIA   98 (370)
T ss_dssp             CCEEEEEEEE-ETTEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTTCCSSC
T ss_pred             chheEEEEEe-cCCceEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCCCCCCC
Confidence            4445566554 457899999999999999999999999999999999998764 56799999999999999999999999


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|++.+. ..|+.|.+|+.|.++.|.+....       |....|+|+||+.+|++.++++|+++++++|| +..++.
T Consensus        99 vGdrV~~~~~-~~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~  169 (370)
T 4ej6_A           99 PGARITGDPN-ISCGRCPQCQAGRVNLCRNLRAI-------GIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLA  169 (370)
T ss_dssp             TTCEEEECCE-ECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHH
T ss_pred             CCCEEEECCC-CCCCCChHHhCcCcccCCCcccc-------CCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHH
Confidence            9999988776 59999999999999999986442       33457999999999999999999999999997 777999


Q ss_pred             HHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHH--
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKA--  240 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~--  240 (299)
                      ++|++++.. .+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+++++++.+.+.   +.+  
T Consensus       170 ta~~~l~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          170 CCLHGVDLS-GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEVGATATVDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHTCSEEECTTSSCHHHHHHSTT
T ss_pred             HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCCEEECCCCcCHHHHHHhhh
Confidence            999999554 45999999999999999999999999999 899999988888877 7899999998876443   333  


Q ss_pred             -h-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C--ceeeChhhhhcCCeeeeeec
Q 022313          241 -L-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S--KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       241 -~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~--~~~~~~~~l~~~~~~~~g~~  298 (299)
                       + .+++|+|||++|....++.++++++++|+++.+|.. .  ..++++..++.|++++.|+.
T Consensus       248 ~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~  310 (370)
T 4ej6_A          248 GLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSF  310 (370)
T ss_dssp             SSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECC
T ss_pred             hccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEec
Confidence             2 248999999999877799999999999999999987 3  67899999999999999975

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=9.7e-49  Score=351.51  Aligned_cols=279  Identities=31%  Similarity=0.540  Sum_probs=243.8

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+....+.+++++.+.|++.++||+|||++++||++|++.+.|.++ ...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vGd   81 (339)
T 1rjw_A            2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGD   81 (339)
T ss_dssp             EEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTTC
T ss_pred             eEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCCC
Confidence            4555544444789999999999999999999999999999999988664 246799999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|++.+....|+.|.+|+++.+++|.+....       |....|+|+||+.+|++.++++|+++++++||++++++.|+|
T Consensus        82 rV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~  154 (339)
T 1rjw_A           82 RVGIPWLYSACGHCDYCLSGQETLCEHQKNA-------GYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY  154 (339)
T ss_dssp             EEEECSEEECCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHH
T ss_pred             EEEEecCCCCCCCCchhhCcCcccCCCccee-------ecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHH
Confidence            9987665557999999999999999976432       234569999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhcCCcc
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALGKSLD  246 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~~~d  246 (299)
                      +++... .++++++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|++++++..+.+   .+.+..+++|
T Consensus       155 ~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~d~~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          155 KALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             HHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECTTTSCHHHHHHHHHSSEE
T ss_pred             HHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEecCCCccHHHHHHHHhCCCC
Confidence            999877 45999999999998899999999999999999999999998888 689999998876532   3333347899


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++||++|....++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       233 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~  285 (339)
T 1rjw_A          233 AAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSI  285 (339)
T ss_dssp             EEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEEec
Confidence            9999999866699999999999999999988 667788888999999999864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.5e-49  Score=355.27  Aligned_cols=280  Identities=24%  Similarity=0.388  Sum_probs=240.6

Q ss_pred             cccceEEeeeCCCCcccceeeecCC-CCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCC
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRA-VGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNV   82 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v   82 (299)
                      +++|+++.+.+..+.+++++++.|+ +.++||+|||+++++|++|++.+.|.++   ...+|.++|||++|+|+++|+++
T Consensus        13 ~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v   92 (359)
T 1h2b_A           13 VERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGV   92 (359)
T ss_dssp             ----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTC
T ss_pred             hhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCC
Confidence            3445666665544578999999999 9999999999999999999999988664   34679999999999999999999


Q ss_pred             CCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccc---
Q 022313           83 SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAA---  159 (299)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa---  159 (299)
                      ++|++||+|+..+. .+|+.|.+|+++.+++|.+....       |....|+|+||+.+|++.++++|+++++++||   
T Consensus        93 ~~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~  164 (359)
T 1h2b_A           93 EGLEKGDPVILHPA-VTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMA  164 (359)
T ss_dssp             CSCCTTCEEEECSC-BCCSCSHHHHTTCGGGCTTCBCB-------TTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTG
T ss_pred             CCCCCCCEEEeCCC-CCCCCChhhhCcCcccCCCcccc-------ccCCCCcccceEEechHhEEECCCCCCHHHHhhcc
Confidence            99999999966544 58999999999999999976432       33456999999999999999999999999998   


Q ss_pred             ccchhhHHHHHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--
Q 022313          160 PLLCAGITVYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDL--  235 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--  235 (299)
                      ++++++.|+|+++... ..+++|++|||+|+|++|++++|+|+.. |++|+++++++++++.+ +++|+++++++++.  
T Consensus       165 ~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~  243 (359)
T 1h2b_A          165 PLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA-ERLGADHVVDARRDPV  243 (359)
T ss_dssp             GGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH-HHTTCSEEEETTSCHH
T ss_pred             chhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCCEEEeccchHH
Confidence            8999999999999874 5569999999999999999999999999 99999999999998888 69999999998765  


Q ss_pred             HHHHHhc--CCccEEEEcCCCch--hHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          236 EQMKALG--KSLDFIIDTASGDH--PFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       236 ~~~~~~~--~~~d~v~d~~g~~~--~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+.++.  .++|+|||++|+..  .++.++++  ++|+++.+|.. .. ++++..++.|++++.|+.
T Consensus       244 ~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~~~~~~~i~g~~  308 (359)
T 1h2b_A          244 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRVISSEVSFEGSL  308 (359)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHHHHTTCEEEECC
T ss_pred             HHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHHHhCCcEEEEec
Confidence            3444554  37999999999985  58888888  99999999988 45 788888999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-48  Score=351.51  Aligned_cols=276  Identities=26%  Similarity=0.357  Sum_probs=235.8

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC--CCCCCccccccccEEEEEecCCCCCcccC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG--DSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~--~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      +++.+....+.+++++.+.|++.++||+|||+++++|++|++.+.|.++  ...+|.++|||++|+|+++|++ ++|++|
T Consensus         5 ka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~~~G   83 (344)
T 2h6e_A            5 KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKVKKG   83 (344)
T ss_dssp             EBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCCCTT
T ss_pred             EEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCCCCC
Confidence            4445544445689999999999999999999999999999999988765  3467999999999999999999 999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEee-cceEEEcCCCCCcccccccchhhHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVH-ERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      |+|+..+ ..+|+.|.+|+++.+++|.+...  .     |....|+|+||+.+| ++.++++ +++++++||++++++.|
T Consensus        84 drV~~~~-~~~Cg~C~~C~~g~~~~C~~~~~--~-----G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~t  154 (344)
T 2h6e_A           84 DNVVVYA-TWGDLTCRYCREGKFNICKNQII--P-----GQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTT  154 (344)
T ss_dssp             CEEEECS-CBCCSCSTTGGGTCGGGCTTCBC--B-----TTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHH
T ss_pred             CEEEECC-CCCCCCChhhhCCCcccCCCccc--c-----ccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHH
Confidence            9996544 35899999999999999987532  1     334569999999999 9999999 99999999999999999


Q ss_pred             HHHHhhhc----cCCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-HHHHHH
Q 022313          168 VYTPMMRH----KMNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGADKFVVSSD-LEQMKA  240 (299)
Q Consensus       168 a~~al~~~----~~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~  240 (299)
                      +|+++...    ..+ +|++|||+|+|++|++++|+|+..  |++|+++++++++.+.+ +++|+++++++.+ .+.+.+
T Consensus       155 a~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~~  232 (344)
T 2h6e_A          155 SMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFA-LELGADYVSEMKDAESLINK  232 (344)
T ss_dssp             HHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH-HHHTCSEEECHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH-HHhCCCEEeccccchHHHHH
Confidence            99999876    266 999999999999999999999999  99999999999988888 6899999998765 444555


Q ss_pred             hc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          241 LG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       241 ~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.  .++|+|||++|+...++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       233 ~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  293 (344)
T 2h6e_A          233 LTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSN  293 (344)
T ss_dssp             HHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECC
T ss_pred             hhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEe
Confidence            43  38999999999986699999999999999999988 566788888899999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.9e-48  Score=350.78  Aligned_cols=277  Identities=22%  Similarity=0.315  Sum_probs=226.9

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhcc-CCC--CCCCCccccccccEEEEEecCCCCCcc
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRN-KHG--DSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g-~~~--~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      |+++.+....+.+++++.+.|++.++||+|||+++++|++|++.+.| .++  ...+|.++|||++|+|+++|+++++|+
T Consensus         5 mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   84 (348)
T 2d8a_A            5 MVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIE   84 (348)
T ss_dssp             EEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCSCC
T ss_pred             ceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCcCC
Confidence            45555543333899999999999999999999999999999999988 432  245789999999999999999999999


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|++.+.. +|+.|.+|++|++++|++....       |....|+|+||+.+|++.++++|+++++++||.+. ++.
T Consensus        85 vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~  155 (348)
T 2d8a_A           85 VGDYVSVETHI-VCGKCYACRRGQYHVCQNTKIF-------GVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLG  155 (348)
T ss_dssp             TTCEEEECCEE-CCSCCC------------CEET-------TTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHH
T ss_pred             CCCEEEEcCCC-CCCCChhhhCcCcccCCCCCee-------cCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHH
Confidence            99999887664 8999999999999999976432       23456999999999999999999999999998775 788


Q ss_pred             HHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG  242 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~  242 (299)
                      |+|++++ ...+ +|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+++++++++.+   .+.++.
T Consensus       156 ta~~~l~-~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~v~~~~  232 (348)
T 2d8a_A          156 NAVDTVL-AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA-KKVGADYVINPFEEDVVKEVMDIT  232 (348)
T ss_dssp             HHHHHHT-TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH-HHHTCSEEECTTTSCHHHHHHHHT
T ss_pred             HHHHHHH-hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEECCCCcCHHHHHHHHc
Confidence            9999995 4556 99999999999999999999999999 999999998888888 689999999876543   344443


Q ss_pred             --CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeCh-hhhhcCCeeeeeec
Q 022313          243 --KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSP-ASLNIGNAPLFRFK  298 (299)
Q Consensus       243 --~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~-~~l~~~~~~~~g~~  298 (299)
                        .++|+|||++|....++.++++++++|+++.+|.. ...++++ ..++.|++++.|+.
T Consensus       233 ~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~  292 (348)
T 2d8a_A          233 DGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGIT  292 (348)
T ss_dssp             TTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECC
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEec
Confidence              47999999999966689999999999999999988 6667888 78889999999863

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=4.7e-48  Score=349.32  Aligned_cols=280  Identities=21%  Similarity=0.298  Sum_probs=239.2

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC-C--CCCCCccccccccEEEEEecCCCCC
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH-G--DSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~-~--~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      |+|+++.+.. ++.+++++.+.|++.++||+|||+++++|++|++.+.|.. .  ...+|.++|||++|+|+++|+++++
T Consensus         6 ~~mka~~~~~-~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            6 PNNLSLVVHG-PGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CCCEEEEEEE-TTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             cCceEEEEec-CCcEEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            4566666654 5779999999999999999999999999999999887432 1  1356899999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchh
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCA  164 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  164 (299)
                      |++||+|++.+.. +|+.|.+|++|++++|.+..+.  |.    ....|+|+||+.+|++.++++|+++++++||.+ .+
T Consensus        85 ~~vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~--g~----~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~  156 (356)
T 1pl8_A           85 LKPGDRVAIEPGA-PRENDEFCKMGRYNLSPSIFFC--AT----PPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EP  156 (356)
T ss_dssp             CCTTCEEEECSEE-CSSCCHHHHTTCGGGCTTCEET--TB----TTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HH
T ss_pred             CCCCCEEEEeccC-CCCCChHHHCcCcccCCCcccc--Cc----CCCCCccccEEEeehHHEEECcCCCCHHHHHhh-ch
Confidence            9999999887664 8999999999999999986432  11    123699999999999999999999999998865 58


Q ss_pred             hHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC---CHHHH--
Q 022313          165 GITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS---DLEQM--  238 (299)
Q Consensus       165 ~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~---~~~~~--  238 (299)
                      +.|+|++++.. .+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|++++++++   +.+..  
T Consensus       157 ~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~~  234 (356)
T 1pl8_A          157 LSVGIHACRRG-GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQISKESPQEIARK  234 (356)
T ss_dssp             HHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEECSSCCHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEEcCcccccchHHHH
Confidence            88999999654 45999999999999999999999999999 999999999888888 699999999887   23332  


Q ss_pred             -HHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          239 -KALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       239 -~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                       .+.. +++|+|||++|+...++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       235 i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  297 (356)
T 1pl8_A          235 VEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVF  297 (356)
T ss_dssp             HHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECC
T ss_pred             HHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEEec
Confidence             2222 68999999999986689999999999999999987 566788888999999999864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=7.4e-48  Score=346.60  Aligned_cols=282  Identities=25%  Similarity=0.367  Sum_probs=242.2

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC--CCCCCccccccccEEEEEecCCCCCccc
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG--DSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~--~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |+++.+.+..+.+++++.+.|++.++||||||+++++|++|++++.|.++  ..++|.++|||++|+|+++|+++++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            35566654545589999999999999999999999999999999988754  2467899999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCcccccc-ccccccccCCCCccCCcceeeEEee-cceEEEcCCCCCcccccccchhh
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARS-VYTFNAIDADGTITKGGYSSYIVVH-ERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ||+|++.+.. .|+.|.+|+++.+++|... .+..   ...|....|+|+||+.+| ++.++++|+ +++++||++++++
T Consensus        81 GdrV~~~~~~-~cg~C~~c~~g~~~~c~~~~~~~~---~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~  155 (345)
T 3jv7_A           81 GDAVAVYGPW-GCGACHACARGRENYCTRAADLGI---TPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAG  155 (345)
T ss_dssp             TCEEEECCSC-CCSSSHHHHTTCGGGCSSHHHHTC---CCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTT
T ss_pred             CCEEEEecCC-CCCCChHHHCcCcCcCcccccccc---ccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhH
Confidence            9999887664 9999999999999999432 2211   111334579999999999 899999999 9999999999999


Q ss_pred             HHHHHHhhh-ccCCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHHh
Q 022313          166 ITVYTPMMR-HKMNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKAL  241 (299)
Q Consensus       166 ~ta~~al~~-~~~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~  241 (299)
                      .|||+++.. ...++++++|||+|+|++|++++|+|+.. +++|+++++++++.+.+ +++|+++++++++.  +.+.++
T Consensus       156 ~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~v~~~  234 (345)
T 3jv7_A          156 LTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REVGADAAVKSGAGAADAIREL  234 (345)
T ss_dssp             HHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHTTCSEEEECSTTHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEEcCCCcHHHHHHHH
Confidence            999999988 44569999999999999999999999998 66999999999999888 79999999987652  334444


Q ss_pred             c--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-ceeeChhhhhcCCeeeeeec
Q 022313          242 G--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       242 ~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +  .++|+|||++|+...++.++++++++|+++.+|.. . ..++++ .++.|+++++|+.
T Consensus       235 t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~  294 (345)
T 3jv7_A          235 TGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPY  294 (345)
T ss_dssp             HGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCC
T ss_pred             hCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEe
Confidence            3  48999999999986799999999999999999988 4 778886 8889999999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.5e-48  Score=346.79  Aligned_cols=278  Identities=25%  Similarity=0.335  Sum_probs=236.8

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhcc-CCC--CCCCCccccccccEEEEEecCCCCCcc
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRN-KHG--DSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g-~~~--~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      |+++.+. .++.+++++.+.|++.++||+|||++++||++|++.+.+ ...  ....|.++|||++|+|+++|+++++|+
T Consensus         5 mka~~~~-~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   83 (352)
T 1e3j_A            5 NLSAVLY-KQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   83 (352)
T ss_dssp             CEEEEEE-ETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             CEEEEEE-cCCcEEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCCCC
Confidence            4455553 356799999999999999999999999999999998874 332  135689999999999999999999999


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|++.+.. +|+.|.+|+++.+++|.+..+.  |.    ....|+|+||+.+|++.++++|+++++++||.+ .++.
T Consensus        84 vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~--g~----~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~  155 (352)
T 1e3j_A           84 KGDRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFC--AT----PPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLS  155 (352)
T ss_dssp             TTCEEEECCEE-CCSSSHHHHTTCGGGCTTCEET--TB----TTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHH
T ss_pred             CCCEEEEcCcC-CCCCChhhhCcCcccCCCCccc--Cc----CCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHH
Confidence            99999887654 8999999999999999986432  21    124699999999999999999999999998865 5888


Q ss_pred             HHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-H---HHHHHh-
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-L---EQMKAL-  241 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~-  241 (299)
                      |+|++++.. .+++|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++ .   +.+.+. 
T Consensus       156 ta~~al~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~i~~~~  233 (352)
T 1e3j_A          156 VGVHACRRA-GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVVDPAKEEESSIIERI  233 (352)
T ss_dssp             HHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEECCTTTSCHHHHHHHH
T ss_pred             HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHhCCCEEEcCcccccHHHHHHHHh
Confidence            999999544 45999999999999999999999999999999999999888888 6899999998763 2   334333 


Q ss_pred             ----cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          242 ----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       242 ----~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                          .+++|++||++|+...++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       234 ~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  295 (352)
T 1e3j_A          234 RSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVF  295 (352)
T ss_dssp             HHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECC
T ss_pred             ccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEEec
Confidence                258999999999986689999999999999999987 566788888999999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-47  Score=345.32  Aligned_cols=281  Identities=26%  Similarity=0.420  Sum_probs=242.4

Q ss_pred             cceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCccc
Q 022313            9 DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +|+++.+....+++++++.+.|++.++||+|||++++||++|++.+.|.++ ...+|.++|||++|+|+++|+++++|++
T Consensus         5 ~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   84 (347)
T 2hcy_A            5 TQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKGWKI   84 (347)
T ss_dssp             EEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCSCCT
T ss_pred             ccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCCCcC
Confidence            345555544444799999999999999999999999999999999988664 2467899999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|++.+....|+.|.+|+++.+++|.+....       |....|+|+||+.+|++.++++|+++++++||++++++.|
T Consensus        85 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  157 (347)
T 2hcy_A           85 GDYAGIKWLNGSCMACEYCELGNESNCPHADLS-------GYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGIT  157 (347)
T ss_dssp             TCEEEECSEEECCSSSTTTTTTCGGGCTTCEEB-------TTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHH
T ss_pred             CCEEEEecCCCCCCCChhhhCCCcccCcccccc-------ccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHH
Confidence            999987665557999999999999999976432       2345699999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-H---HHHHHhc
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-L---EQMKALG  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~~  242 (299)
                      +|+++... .++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++.+++..+ .   +.+.+..
T Consensus       158 a~~~l~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~  235 (347)
T 2hcy_A          158 VYKALKSA-NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSIGGEVFIDFTKEKDIVGAVLKAT  235 (347)
T ss_dssp             HHHHHHTT-TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHTTCCEEEETTTCSCHHHHHHHHH
T ss_pred             HHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHcCCceEEecCccHhHHHHHHHHh
Confidence            99999877 5599999999998 8999999999999999999999998888777 6899998888653 2   2333332


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                       +++|++||++|....++.++++++++|+++.+|..  ...++++..++.|++++.|+.
T Consensus       236 ~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~  294 (347)
T 2hcy_A          236 DGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSY  294 (347)
T ss_dssp             TSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECC
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEcc
Confidence             38999999999866699999999999999999988  456788888999999999864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=4.8e-48  Score=350.11  Aligned_cols=282  Identities=20%  Similarity=0.265  Sum_probs=237.8

Q ss_pred             ccccccceEEeeeCCCCcccceeeecC--------CCCCCcEEEEEceeecccchhhhhccCC-C--CCCCCcccccccc
Q 022313            4 ETASKDCLGWAARDPSGVLSPYSFNRR--------AVGSDDVSITITHCGVCYADVIWTRNKH-G--DSKYPLVPGHEIV   72 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~evlv~v~~~~i~~~D~~~~~g~~-~--~~~~p~~lG~e~~   72 (299)
                      |+.+++++++.+ ..++.+++++.+.|        ++.++||||||+++++|++|++.+.+.. +  ..++|.++|||++
T Consensus         3 ~~~~~~mka~~~-~~~~~l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~   81 (363)
T 3m6i_A            3 SSASKTNIGVFT-NPQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESA   81 (363)
T ss_dssp             --CCSCCEEEEE-CTTCCEEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEE
T ss_pred             CCCcccceeEEE-eCCCcEEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceE
Confidence            345666777776 46788999999999        9999999999999999999999887432 2  2467899999999


Q ss_pred             EEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCC
Q 022313           73 GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND  152 (299)
Q Consensus        73 G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~  152 (299)
                      |+|+++|+++++|++||+|++.+. .+|+.|.+|++|.++.|.+..+.  +.    ....|+|+||+.+|++.++++|+ 
T Consensus        82 G~V~~vG~~v~~~~vGdrV~~~~~-~~cg~C~~c~~g~~~~c~~~~~~--g~----~~~~G~~aey~~v~~~~~~~iP~-  153 (363)
T 3m6i_A           82 GEVIAVHPSVKSIKVGDRVAIEPQ-VICNACEPCLTGRYNGCERVDFL--ST----PPVPGLLRRYVNHPAVWCHKIGN-  153 (363)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECCE-ECCSCSHHHHTTCGGGCTTCEET--TS----TTSCCSCBSEEEEEGGGEEECTT-
T ss_pred             EEEEEECCCCCCCCCCCEEEEecc-cCCCCCHHHHCcCcccCCCcccc--CC----CCCCccceeEEEEehhhEEECCC-
Confidence            999999999999999999988776 49999999999999999987543  11    12569999999999999999999 


Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +++++||.+ .++.|+|++++... +++|++|||+|+|++|++++|+|+..|++ |+++++++++.+.+ +++ ++++++
T Consensus       154 ~s~~~aa~~-~~~~ta~~~l~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l-~~~~~~  229 (363)
T 3m6i_A          154 MSYENGAML-EPLSVALAGLQRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA-KEI-CPEVVT  229 (363)
T ss_dssp             CCHHHHHHH-HHHHHHHHHHHHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HHH-CTTCEE
T ss_pred             CCHHHHHhh-hHHHHHHHHHHHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-chhccc
Confidence            999999977 58889999995544 59999999999999999999999999996 99999999998888 577 555443


Q ss_pred             CC----C-HH---HHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          232 SS----D-LE---QMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       232 ~~----~-~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.    + .+   .+.+..  +++|+|||++|+...++.++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       230 ~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  307 (363)
T 3m6i_A          230 HKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQY  307 (363)
T ss_dssp             EECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEEEECC
T ss_pred             ccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEEEEcc
Confidence            32    2 22   233333  58999999999986689999999999999999988 667788899999999999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5e-47  Score=345.37  Aligned_cols=285  Identities=24%  Similarity=0.350  Sum_probs=239.7

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC----
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS----   83 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~----   83 (299)
                      .+|+++.+.+..+.+++++.+.|++.++||||||++++||++|++.+.|.++...+|.++|||++|+|+++| +++    
T Consensus        16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~~~   94 (380)
T 1vj0_A           16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRDLN   94 (380)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBCTT
T ss_pred             hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccccc
Confidence            445566664433489999999999999999999999999999999998876545679999999999999999 999    


Q ss_pred             --CcccCCEEEEeccccCCCCCcccc-CCCCcccccccccccccc---CCCCccCCcceeeEEe-ecceEEEcCCCCCcc
Q 022313           84 --RFKVGDHVGVGTYVNSCRDCEYCN-DGLEVHCARSVYTFNAID---ADGTITKGGYSSYIVV-HERYCYKIANDYPLA  156 (299)
Q Consensus        84 --~~~~Gd~V~~~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~-~~~~~~~~p~~~~~~  156 (299)
                        +|++||+|++.+.. +|+.|.+|+ ++.+++|.+..+.  |..   ..+....|+|+||+.+ |++.++++|++++++
T Consensus        95 ~~~~~vGdrV~~~~~~-~cg~C~~C~~~g~~~~C~~~~~~--g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~~~  171 (380)
T 1vj0_A           95 GELLKPGDLIVWNRGI-TCGECYWCKVSKEPYLCPNRKVY--GINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLD  171 (380)
T ss_dssp             SCBCCTTCEEEECSEE-CCSSSHHHHTSCCGGGCTTCEET--TTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSCHH
T ss_pred             CCCCCCCCEEEEcccC-CCCCCHHHhcCCCcccCCCccee--ccccccCCCCCCCccccceEEEcccceEEECCCCCChH
Confidence              99999999887764 899999999 9999999976431  110   0001346999999999 999999999999999


Q ss_pred             -cccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC-
Q 022313          157 -LAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS-  233 (299)
Q Consensus       157 -~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~-  233 (299)
                       +|+.+. ++.|+|+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++. 
T Consensus       172 ~~Aa~~~-~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~  249 (380)
T 1vj0_A          172 VLAMAMC-SGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNRRE  249 (380)
T ss_dssp             HHHHHTT-HHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTTCSEEEETTT
T ss_pred             HhHhhhc-HHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH-HHcCCcEEEeccc
Confidence             665555 999999999765416999999999999999999999999995 999999999998888 689999999887 


Q ss_pred             --CHH---HHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCC---ceeeChhh-hhcCCeeeeeec
Q 022313          234 --DLE---QMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS---KVKFSPAS-LNIGNAPLFRFK  298 (299)
Q Consensus       234 --~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~~~~~~-l~~~~~~~~g~~  298 (299)
                        +.+   .+.+..  .++|+|||++|+...++.++++++++|+++.+|...   ..++++.. ++.|+++++|+.
T Consensus       250 ~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~  325 (380)
T 1vj0_A          250 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIW  325 (380)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECC
T ss_pred             cCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEee
Confidence              433   233443  379999999998766999999999999999999874   57788888 899999999964

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=9.3e-48  Score=345.70  Aligned_cols=276  Identities=22%  Similarity=0.362  Sum_probs=237.4

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCccc
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +++.+....+++++++.+.|++.++||+|||+++++|++|++.+.|.++   ....|.++|||++|+|+++|+++++|++
T Consensus         2 ka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   81 (343)
T 2dq4_A            2 RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQV   81 (343)
T ss_dssp             EEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSCT
T ss_pred             eEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCCC
Confidence            3455543333388999999999999999999999999999999988643   2467899999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|++.+.. +|+.|.+|++|++++|.+....       |....|+|+||+.+|++.++++|+++++++||.+ .++.|
T Consensus        82 GdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~t  152 (343)
T 2dq4_A           82 GDHVSLESHI-VCHACPACRTGNYHVCLNTQIL-------GVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGN  152 (343)
T ss_dssp             TCEEEECCEE-CCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHH
T ss_pred             CCEEEECCCC-CCCCChhhhCcCcccCCCccee-------cCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHH
Confidence            9999887665 8999999999999999986432       2235699999999999999999999999999877 57789


Q ss_pred             HHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHh-c
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKAL-G  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~-~  242 (299)
                      +|+++.....+ +|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++ +++++++.+.+   .+.++ .
T Consensus       153 a~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~l-a~~v~~~~~~~~~~~~~~~~~  229 (343)
T 2dq4_A          153 AVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFA-RPY-ADRLVNPLEEDLLEVVRRVTG  229 (343)
T ss_dssp             HHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGG-TTT-CSEEECTTTSCHHHHHHHHHS
T ss_pred             HHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-HHhccCcCccCHHHHHHHhcC
Confidence            99999745666 99999999999999999999999999 999999998888877 678 99999877532   23333 4


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeCh-hhhhcCCeeeeeec
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSP-ASLNIGNAPLFRFK  298 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~-~~l~~~~~~~~g~~  298 (299)
                      +++|+|||++|+...++.++++++++|+++.+|.. ...++++ ..++.|++++.|+.
T Consensus       230 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~  287 (343)
T 2dq4_A          230 SGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIA  287 (343)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEEECC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEEEee
Confidence            68999999999966699999999999999999988 6778888 88999999999863

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=2.9e-47  Score=343.04  Aligned_cols=278  Identities=28%  Similarity=0.486  Sum_probs=247.3

Q ss_pred             eEEeee-CCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAAR-DPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~-~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+. .+++.+++++.+.|+|+|+||||||++++||++|++++.|.++ .++|.++|||++|+|+++|+++++|++||
T Consensus         2 KA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~-~~~p~i~GhE~aG~V~~vG~~V~~~~~Gd   80 (348)
T 4eez_A            2 KAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG-NKAGTVLGHEGIGIVKEIGADVSSLQVGD   80 (348)
T ss_dssp             EEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC-CCTTCBCCSEEEEEEEEECTTCCSCCTTC
T ss_pred             eEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC-CCCCcccceeEEEEEEEECceeeecccCC
Confidence            344443 3456789999999999999999999999999999999999876 56799999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|.+.+....|+.|.+|..+.++.|......       +....|+|+||+.++++.++++|+++++++||++++++.|+|
T Consensus        81 rV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~  153 (348)
T 4eez_A           81 RVSVAWFFEGCGHCEYCVSGNETFCREVKNA-------GYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTY  153 (348)
T ss_dssp             EEEEESEEECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHH
T ss_pred             eEeecccccccCccccccCCccccccccccc-------ccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEE
Confidence            9999888888999999999999999987554       335679999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--C
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--K  243 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~  243 (299)
                      ++++.... ++|++|||+|+|++|.+++|+++.. +++|+++++++++.+.+ +++|+++++++.+.+.   +.+++  .
T Consensus       154 ~~l~~~~~-~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~-~~~Ga~~~i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          154 KAIKVSGV-KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             HHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH-HHTTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred             eeecccCC-CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhh-hhcCCeEEEeCCCCCHHHHhhhhcCCC
Confidence            99976665 9999999999999999999999976 56999999999988877 7999999999887543   44443  5


Q ss_pred             CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++|.+++++++..++..++++++++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       232 g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~  287 (348)
T 4eez_A          232 GVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSL  287 (348)
T ss_dssp             CEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECC
T ss_pred             CceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEe
Confidence            7999999999998899999999999999999988 888899999999999999864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.7e-47  Score=342.62  Aligned_cols=278  Identities=22%  Similarity=0.306  Sum_probs=239.4

Q ss_pred             eEEeeeCCC--CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCccc
Q 022313           11 LGWAARDPS--GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        11 ~~~~~~~~~--~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +++.+....  +.+++++.+.|++.++||||||+++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|++
T Consensus         2 ka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~v   81 (343)
T 2eih_A            2 RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAP   81 (343)
T ss_dssp             EEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCCT
T ss_pred             eEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCCC
Confidence            344443333  33788999999999999999999999999999999886643 367899999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|++.+. .+|+.|.+|++|.+++|.+....       |....|+|+||+.+|++.++++|+++++++||++++++.|
T Consensus        82 GdrV~~~~~-~~cg~c~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~t  153 (343)
T 2eih_A           82 GDEVVINPG-LSCGRCERCLAGEDNLCPRYQIL-------GEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT  153 (343)
T ss_dssp             TCEEEECCE-ECCSCSHHHHTTCGGGCTTCEET-------TTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHH
T ss_pred             CCEEEECCC-CCcccchhhccCccccccccccc-------CcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHH
Confidence            999998774 59999999999999999976432       2234699999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc-
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG-  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~-  242 (299)
                      +|+++.....++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++++++..+.+   .+.+.. 
T Consensus       154 a~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~-~~~ga~~~~d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          154 AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA-KALGADETVNYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             HHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTSTTHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEcCCcccHHHHHHHHhC
Confidence            9999987666799999999998 9999999999999999999999999988888 689999998876543   333333 


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-ceeeChhhhhcCCeeeeeec
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~~~~~~~l~~~~~~~~g~~  298 (299)
                       .++|++||++|+. .++.++++++++|+++.+|.. . ..++++..++.|++++.|+.
T Consensus       233 ~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~  290 (343)
T 2eih_A          233 GKGADKVVDHTGAL-YFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGST  290 (343)
T ss_dssp             TTCEEEEEESSCSS-SHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECC
T ss_pred             CCCceEEEECCCHH-HHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEec
Confidence             4799999999954 599999999999999999987 3 33578888889999999863

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.2e-46  Score=338.87  Aligned_cols=274  Identities=22%  Similarity=0.348  Sum_probs=233.8

Q ss_pred             eEEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+ ..++.++++|.|.|++ +|+||||||++++||++|++.+.|..+ ..+|+++|||++|+|+++|++++++++||
T Consensus         2 kAvv~-~~~g~l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~~Gd   79 (346)
T 4a2c_A            2 KSVVN-DTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLHPGD   79 (346)
T ss_dssp             EEEEE-CSSSCEEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCCTTC
T ss_pred             CEEEE-ecCCCEEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCcccccCCC
Confidence            44544 4678899999999985 799999999999999999998888654 56899999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|.+.+.. .|+.|.+|+.+.++.|.+..+.       |....|+|+||+.+|+++++++|+++++++||.+. .+.+++
T Consensus        80 rV~~~~~~-~~g~c~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~  150 (346)
T 4a2c_A           80 AVACVPLL-PCFTCPECLKGFYSQCAKYDFI-------GSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGL  150 (346)
T ss_dssp             EEEECCEE-CCSCSHHHHTTCGGGCSSCEEB-------TTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHH
T ss_pred             eEEeeecc-CCCCcccccCCccccCCCcccc-------cCCCCcccccccccchheEEECCCCCCHHHHHhch-HHHHHH
Confidence            99886664 8999999999999999987543       44567999999999999999999999999998765 556666


Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHh--cC
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKAL--GK  243 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~--~~  243 (299)
                      +++..... +++++|||+|+|++|++++|+|+..|++ ++++++++++.+.+ +++|+++++++.+.+   ...++  .+
T Consensus       151 ~~~~~~~~-~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~~lGa~~~i~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          151 HAFHLAQG-CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             HHHHHTTC-CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHGGGC
T ss_pred             HHHHHhcc-CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHH-HHcCCeEEEeCCCCCHHHHHHhhcccC
Confidence            66655554 9999999999999999999999999995 56777788887777 799999999988743   33333  37


Q ss_pred             CccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Ccee---eChhhhhcCCeeeeee
Q 022313          244 SLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVK---FSPASLNIGNAPLFRF  297 (299)
Q Consensus       244 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~---~~~~~l~~~~~~~~g~  297 (299)
                      ++|+|+|++|...+++.++++++++|+++.+|.. ....   +++..++.|+++++|+
T Consensus       229 g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~  286 (346)
T 4a2c_A          229 FNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGS  286 (346)
T ss_dssp             SSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEEC
T ss_pred             CcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEE
Confidence            8999999999988899999999999999999988 4433   4556788999999985

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-46  Score=344.09  Aligned_cols=269  Identities=19%  Similarity=0.373  Sum_probs=234.2

Q ss_pred             cccceeeecCC-CCCCcEEEEEceeecccchhhhhccCCC-------CCCCCccccccccEEEEEecCCC------CCcc
Q 022313           21 VLSPYSFNRRA-VGSDDVSITITHCGVCYADVIWTRNKHG-------DSKYPLVPGHEIVGIVKEVGHNV------SRFK   86 (299)
Q Consensus        21 ~~~~~~~~~p~-~~~~evlv~v~~~~i~~~D~~~~~g~~~-------~~~~p~~lG~e~~G~V~~vG~~v------~~~~   86 (299)
                      .+++++++.|+ +.++||||||++++||++|++++.|...       ..++|.++|||++|+|+++|+++      ++|+
T Consensus        41 ~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~  120 (404)
T 3ip1_A           41 EVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFE  120 (404)
T ss_dssp             EEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECC
T ss_pred             ceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCC
Confidence            68889999999 9999999999999999999999876421       24678999999999999999999      8899


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCc------ccccc
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPL------ALAAP  160 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~------~~aa~  160 (299)
                      +||+|++.+.. .|+.|.+|++|.+++|.+....       |....|+|+||+.+|++.++++|+.++.      .++|+
T Consensus       121 vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~  192 (404)
T 3ip1_A          121 IGEPVCAEEML-WCGHCRPCAEGFPNHCENLNEL-------GFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGS  192 (404)
T ss_dssp             TTCEEEECSEE-CCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHH
T ss_pred             CCCEEEECCcc-CCCCCHHHHCcCcccCcccccc-------CCCCCCCCcceEEechHHeEeccccccccccccchhHHh
Confidence            99999887764 8999999999999999986532       3345799999999999999999998864      45888


Q ss_pred             cchhhHHHHHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH--
Q 022313          161 LLCAGITVYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE--  236 (299)
Q Consensus       161 ~~~~~~ta~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--  236 (299)
                      ++.++.|||+++... ..+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+++++++.+.+  
T Consensus       193 l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~  271 (404)
T 3ip1_A          193 LVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELGADHVIDPTKENFV  271 (404)
T ss_dssp             THHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHTCSEEECTTTSCHH
T ss_pred             hhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCCEEEcCCCCCHH
Confidence            999999999998644 367999999999999999999999999999 899999999888888 799999999887643  


Q ss_pred             -HHHHhc--CCccEEEEcCCCc-hhHHHHHHhc----ccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          237 -QMKALG--KSLDFIIDTASGD-HPFDAYMSLL----KVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       237 -~~~~~~--~~~d~v~d~~g~~-~~~~~~~~~l----~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                       .+.++.  .++|+|||++|+. ..+..+++++    +++|+++.+|.. ...++++..++.|++++.|+.
T Consensus       272 ~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  342 (404)
T 3ip1_A          272 EAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ  342 (404)
T ss_dssp             HHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECC
T ss_pred             HHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEec
Confidence             344443  4799999999998 3466777777    999999999998 777999999999999999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.1e-46  Score=339.88  Aligned_cols=279  Identities=19%  Similarity=0.247  Sum_probs=234.1

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhh-hhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVI-WTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~-~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+. .++.+++++.+.|++.++||+|||++++||++|++ ++.|.++ .++|.++|||++|+|+++|+++++|++||
T Consensus         2 kA~~~~-~~~~~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vGd   79 (352)
T 3fpc_A            2 KGFAML-SIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFKPGD   79 (352)
T ss_dssp             EEEEEE-ETTEEEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCCTTC
T ss_pred             eEEEEc-cCCCceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCCCCC
Confidence            445553 55668899999999999999999999999999999 5577665 46799999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcccccccchhhHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      +|++.+.. +|+.|.+|+.+++.+|.+....+    ..+....|+|+||+.+|+.  .++++|+++++++||.+++++.|
T Consensus        80 rV~~~~~~-~c~~c~~c~~g~~~~~~~~~~~~----~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~t  154 (352)
T 3fpc_A           80 RVVVPAIT-PDWRTSEVQRGYHQHSGGMLAGW----KFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTT  154 (352)
T ss_dssp             EEEECSBC-CCSSSHHHHTTCGGGTTSTTTTB----CBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHH
T ss_pred             EEEEcccc-CCCCchhhcCCCcCCcccccccc----ccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHH
Confidence            99886654 89999999999999987642211    1133467999999999975  89999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---HHHHhc-
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLE---QMKALG-  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~-  242 (299)
                      +|++++... +++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+++++++++.+   .+.+.+ 
T Consensus       155 a~~al~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~v~~~t~  232 (352)
T 3fpc_A          155 GFHGAELAN-IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEYGATDIINYKNGDIVEQILKATD  232 (352)
T ss_dssp             HHHHHHHTT-CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHHTCCEEECGGGSCHHHHHHHHTT
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCceEEcCCCcCHHHHHHHHcC
Confidence            999996544 5999999999999999999999999999 899999988888877 789999999876643   344443 


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc--eeeChhh--hhcCCeeeeeec
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK--VKFSPAS--LNIGNAPLFRFK  298 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~--~~~~~~~--l~~~~~~~~g~~  298 (299)
                       +++|+|||++|++..++.++++++++|+++.+|.. ..  .+++...  +..++++++|+.
T Consensus       233 g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  294 (352)
T 3fpc_A          233 GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGL  294 (352)
T ss_dssp             TCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBC
T ss_pred             CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEee
Confidence             47999999999977799999999999999999987 33  3444332  335789998863

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=4.5e-46  Score=337.12  Aligned_cols=276  Identities=24%  Similarity=0.346  Sum_probs=234.8

Q ss_pred             ceEEeeeC-CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCccc
Q 022313           10 CLGWAARD-PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        10 ~~~~~~~~-~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      |+++.+.. .++.+++.+.+.|+++++||||||++++||++|++++.|.++ ..++|.++|||++|+|+++|+++++|++
T Consensus        28 mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~v  107 (363)
T 3uog_A           28 MQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRP  107 (363)
T ss_dssp             EEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             hEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCCCCCC
Confidence            55555543 347899999999999999999999999999999999988765 3568999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|++.+.       .+|+.+. +.|.+......   ..|....|+|+||+.+|++.++++|+++++++||.+++++.|
T Consensus       108 GDrV~~~~~-------~~c~~g~-~~c~~~~~~~~---~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  176 (363)
T 3uog_A          108 GDRVISTFA-------PGWLDGL-RPGTGRTPAYE---TLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT  176 (363)
T ss_dssp             TCEEEECSS-------TTCCSSS-CCSCSSCCCCC---CTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHH
T ss_pred             CCEEEEecc-------ccccccc-ccccccccccc---ccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHH
Confidence            999976432       2677788 88874321100   013346799999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH---HHHHHhc--
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL---EQMKALG--  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~--  242 (299)
                      +|+++.....+++|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|++++++..+.   +.+.++.  
T Consensus       177 a~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~v~~~~~g  255 (363)
T 3uog_A          177 AWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FALGADHGINRLEEDWVERVYALTGD  255 (363)
T ss_dssp             HHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHcCCCEEEcCCcccHHHHHHHHhCC
Confidence            99999766777999999999999999999999999999999999999998887 78999999985433   2344443  


Q ss_pred             CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          243 KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      .++|++||++|+.. +..++++++++|+++.+|..  ...++++..++.|++++.|+.
T Consensus       256 ~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  312 (363)
T 3uog_A          256 RGADHILEIAGGAG-LGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGIS  312 (363)
T ss_dssp             CCEEEEEEETTSSC-HHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECC
T ss_pred             CCceEEEECCChHH-HHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEe
Confidence            48999999999665 99999999999999999988  357888889999999999975

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=2.1e-46  Score=337.32  Aligned_cols=277  Identities=29%  Similarity=0.497  Sum_probs=238.6

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC--------CCCCCccccccccEEEEEecCCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG--------DSKYPLVPGHEIVGIVKEVGHNV   82 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~--------~~~~p~~lG~e~~G~V~~vG~~v   82 (299)
                      +++.+....+.+++++.+.|+++++||+|||+++++|++|++.+.|.++        ...+|.++|||++|+|+++|+++
T Consensus         2 ka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v   81 (347)
T 1jvb_A            2 RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEV   81 (347)
T ss_dssp             EEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTC
T ss_pred             eEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCCC
Confidence            4555544445689999999999999999999999999999999887654        24679999999999999999999


Q ss_pred             CCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeec-ceEEEcCCCCCccccccc
Q 022313           83 SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE-RYCYKIANDYPLALAAPL  161 (299)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~-~~~~~~p~~~~~~~aa~~  161 (299)
                      ++|++||+|+..+. .+|+.|.+|+++++++|.+....       |....|+|+||+.+|+ +.++++ +++++++||++
T Consensus        82 ~~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l  152 (347)
T 1jvb_A           82 VGYSKGDLVAVNPW-QGEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPL  152 (347)
T ss_dssp             CSCCTTCEEEECCE-ECCSSSHHHHTTCGGGCSSCEEB-------TTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGG
T ss_pred             CCCCCCCEEEeCCC-CCCCCChhhhCcCcccCcccccc-------cccCCCcceeEEEecCccceEEe-CCCCHHHcccc
Confidence            99999999965544 48999999999999999976432       2345699999999999 999999 99999999999


Q ss_pred             chhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH--
Q 022313          162 LCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ--  237 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--  237 (299)
                      ++++.|+|+++.. ..++++++|||+|+| ++|++++|+++.. |++|+++++++++.+.+ +++|++++++..+.+.  
T Consensus       153 ~~~~~ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  230 (347)
T 1jvb_A          153 TCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVINASMQDPLA  230 (347)
T ss_dssp             GTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHH
T ss_pred             hhhHHHHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCEEecCCCccHHH
Confidence            9999999999976 455999999999985 9999999999999 99999999999888888 6899999988776433  


Q ss_pred             -HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCC-ceeeChhhhhcCCeeeeeec
Q 022313          238 -MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS-KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       238 -~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~l~~~~~~~~g~~  298 (299)
                       +.++.  +++|++||++|+...++.++++++++|+++.+|... ..++++..++.|++++.|+.
T Consensus       231 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  295 (347)
T 1jvb_A          231 EIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSL  295 (347)
T ss_dssp             HHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECC
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCHHHHHhCceEEEEEe
Confidence             44444  589999999999866899999999999999999873 22788888889999999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=8.9e-46  Score=334.50  Aligned_cols=276  Identities=19%  Similarity=0.170  Sum_probs=231.9

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCC---CccccccccEEEEEecCCCCCccc
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKY---PLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~---p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +++.+....+.+++++.+.|++.++||||||++++||++|++++.|.++...+   |.++|||++| |+++|++ ++|++
T Consensus         2 kA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~v   79 (357)
T 2b5w_A            2 KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELEE   79 (357)
T ss_dssp             EEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCCT
T ss_pred             eEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCCC
Confidence            45555444334999999999999999999999999999999999887654456   8999999999 9999999 99999


Q ss_pred             CCEEEEeccccC--CCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           88 GDHVGVGTYVNS--CRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        88 Gd~V~~~~~~~~--c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ||+|++.+.. .  |+.|.+|+++.+++|.+..+...|.    ....|+|+||+.+|++.++++|++++ + +|+++.++
T Consensus        80 GdrV~~~~~~-~~~cg~C~~C~~g~~~~C~~~~~~~~g~----~~~~G~~aey~~v~~~~~~~iP~~~~-~-~aal~~~~  152 (357)
T 2b5w_A           80 GDIVVPTVRR-PPASGTNEYFERDQPDMAPDGMYFERGI----VGAHGYMSEFFTSPEKYLVRIPRSQA-E-LGFLIEPI  152 (357)
T ss_dssp             TCEEEECSEE-CCTTCCCHHHHTTCGGGCCTTSCEEETT----BEECCSCBSEEEEEGGGEEECCGGGS-T-TGGGHHHH
T ss_pred             CCEEEECCcC-CCCCCCChHHhCcCcccCCCCcccccCc----cCCCcceeeEEEEchHHeEECCCCcc-h-hhhhhchH
Confidence            9999876543 5  9999999999999999864321011    02359999999999999999999999 5 45688899


Q ss_pred             HHHHHHhhhccCCCCC------CEEEEEcCChHHHHH-HHHH-HHCCCe-EEEEeCCch---HHHHHHHhcCCCEEEeCC
Q 022313          166 ITVYTPMMRHKMNQPG------KSLGVIGLGGLGHMA-VKFG-KAFGLN-VTVLSTSTS---KKEEALSLLGADKFVVSS  233 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g------~~vlI~G~g~~G~~a-~~~a-~~~g~~-v~~~~~~~~---~~~~~~~~~g~~~v~~~~  233 (299)
                      .|||++++... +++|      ++|||+|+|++|+++ +|+| +..|++ |++++++++   +.+.+ +++|++++ +++
T Consensus       153 ~ta~~al~~~~-~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~lGa~~v-~~~  229 (357)
T 2b5w_A          153 SITEKALEHAY-ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EELDATYV-DSR  229 (357)
T ss_dssp             HHHHHHHHHHH-HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHTTCEEE-ETT
T ss_pred             HHHHHHHHhcC-CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHcCCccc-CCC
Confidence            99999996544 4899      999999999999999 9999 999996 999999988   88888 69999999 876


Q ss_pred             CHHH--HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhh----hcCCeeeeeec
Q 022313          234 DLEQ--MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASL----NIGNAPLFRFK  298 (299)
Q Consensus       234 ~~~~--~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l----~~~~~~~~g~~  298 (299)
                      +.+.  +.++.+++|+|||++|+...++.++++++++|+++.+|..  ...++++..+    +.|++++.|+.
T Consensus       230 ~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  302 (357)
T 2b5w_A          230 QTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSV  302 (357)
T ss_dssp             TSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECC
T ss_pred             ccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEec
Confidence            5321  4444348999999999986689999999999999999987  3566777778    89999999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=3.8e-45  Score=334.92  Aligned_cols=279  Identities=16%  Similarity=0.208  Sum_probs=232.6

Q ss_pred             eEEeeeCCCCcccceeeecCCC-CC-----CcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAV-GS-----DDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~-~~-----~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      +++.+. .++.+++++++.|++ .+     +||+|||++++||++|++++.|.+. .++|.++|||++|+|+++|+++++
T Consensus         4 kA~~~~-~~~~l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v~~   81 (398)
T 2dph_A            4 KSVVYH-GTRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDVEL   81 (398)
T ss_dssp             EEEEEE-ETTEEEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTCCS
T ss_pred             EEEEEE-cCCCEEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCCCC
Confidence            444443 456799999999987 68     9999999999999999999988653 467899999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccc------cccccCCCCccCCcceeeEEeecc--eEEEcCCCCCcc
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT------FNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLA  156 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~  156 (299)
                      |++||+|++.+. .+|+.|.+|++|.+++|.+....      ..|...  ....|+|+||+.+|++  .++++|++++++
T Consensus        82 ~~vGDrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~--~~~~G~~aey~~v~~~~~~~~~iP~~~~~~  158 (398)
T 2dph_A           82 MDIGDLVSVPFN-VACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL--KGWSGGQAEYVLVPYADYMLLKFGDKEQAM  158 (398)
T ss_dssp             CCTTCEEECCSB-CCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB--SSCCCSSBSEEEESSHHHHCEECSSHHHHH
T ss_pred             CCCCCEEEEcCC-CCCCCChhhhCcCcccCCCcccccccccccccccc--CCCCceeeeeEEeccccCeEEECCCCCChh
Confidence            999999987665 48999999999999999872110      111100  1246999999999986  899999999999


Q ss_pred             c----ccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          157 L----AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       157 ~----aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +    ||++++++.|+|++++. ..+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|++ +++
T Consensus       159 ~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~-~i~  235 (398)
T 2dph_A          159 EKIKDLTLISDILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLL-SDAGFE-TID  235 (398)
T ss_dssp             HTHHHHTTTTTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HTTTCE-EEE
T ss_pred             hhcchhhhhcCHHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCc-EEc
Confidence            8    89999999999999964 456999999999999999999999999999 999999999998888 689995 777


Q ss_pred             CCCH----HHHHHhc--CCccEEEEcCCCch--------------hHHHHHHhcccCcEEEEEcCC--------------
Q 022313          232 SSDL----EQMKALG--KSLDFIIDTASGDH--------------PFDAYMSLLKVAGVYVLVGFP--------------  277 (299)
Q Consensus       232 ~~~~----~~~~~~~--~~~d~v~d~~g~~~--------------~~~~~~~~l~~~G~~v~~g~~--------------  277 (299)
                      +.+.    +.+.++.  .++|+|||++|+..              .++.++++++++|+++.+|..              
T Consensus       236 ~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~  315 (398)
T 2dph_A          236 LRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGS  315 (398)
T ss_dssp             TTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHT
T ss_pred             CCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccC
Confidence            7653    3344443  37999999999762              589999999999999999976              


Q ss_pred             CceeeChhhhhcCCeeeeee
Q 022313          278 SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       278 ~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ...++++..++.|++++.|+
T Consensus       316 ~~~~~~~~~~~~k~~~i~g~  335 (398)
T 2dph_A          316 GRLHLDFGKMWTKSIRIMTG  335 (398)
T ss_dssp             TEEEEEHHHHHHTTCEEECS
T ss_pred             CcccccHHHHhhcCCEEEEe
Confidence            12467777889999999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=5.7e-45  Score=339.23  Aligned_cols=287  Identities=15%  Similarity=0.194  Sum_probs=242.0

Q ss_pred             CcccccccceEEeeeCC---------------CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccC---------
Q 022313            2 TSETASKDCLGWAARDP---------------SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNK---------   57 (299)
Q Consensus         2 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~---------   57 (299)
                      ++|+.|.+++++.+...               ++.+++++++.|++.++||||||++++||++|++...+.         
T Consensus        23 ~~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~  102 (456)
T 3krt_A           23 AALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLE  102 (456)
T ss_dssp             HHSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHH
T ss_pred             ccCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhh
Confidence            45666777778877654               357889999999999999999999999999998764321         


Q ss_pred             ----CC----CCCCC-ccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCC
Q 022313           58 ----HG----DSKYP-LVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADG  128 (299)
Q Consensus        58 ----~~----~~~~p-~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g  128 (299)
                          ..    ..++| .++|||++|+|+++|+++++|++||+|++.+.  .|..|..|.++.+..|.+....  |.    
T Consensus       103 ~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~--~c~~~~~~~~~~~~~c~~~~~~--G~----  174 (456)
T 3krt_A          103 RYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL--SVELESSDGHNDTMLDPEQRIW--GF----  174 (456)
T ss_dssp             HHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE--ECCCCSGGGTTSGGGCTTCEET--TT----
T ss_pred             hccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC--cccccccccccccccCcccccc--cc----
Confidence                11    13456 58999999999999999999999999988654  6888999999999999876432  11    


Q ss_pred             CccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhc--cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCC
Q 022313          129 TITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRH--KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGL  205 (299)
Q Consensus       129 ~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~--~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~  205 (299)
                      ....|+|+||+.+|+++++++|+++++++||.+++++.|+|+++...  ..+++|++|||+|+ |++|++++|+|+..|+
T Consensus       175 ~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga  254 (456)
T 3krt_A          175 ETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA  254 (456)
T ss_dssp             TSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            12359999999999999999999999999999999999999998654  56699999999998 9999999999999999


Q ss_pred             eEEEEeCCchHHHHHHHhcCCCEEEeCCCH--------------------HHHHHhc--CCccEEEEcCCCchhHHHHHH
Q 022313          206 NVTVLSTSTSKKEEALSLLGADKFVVSSDL--------------------EQMKALG--KSLDFIIDTASGDHPFDAYMS  263 (299)
Q Consensus       206 ~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--------------------~~~~~~~--~~~d~v~d~~g~~~~~~~~~~  263 (299)
                      +|+++++++++++.+ +++|+++++++.+.                    +.+.++.  .++|+|||++|+. .+..+++
T Consensus       255 ~vi~~~~~~~~~~~~-~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~-~~~~~~~  332 (456)
T 3krt_A          255 NPICVVSSPQKAEIC-RAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE-TFGASVF  332 (456)
T ss_dssp             EEEEEESSHHHHHHH-HHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHH-HHHHHHH
T ss_pred             eEEEEECCHHHHHHH-HhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCch-hHHHHHH
Confidence            999999998888888 78999999987653                    3344443  5899999999994 5999999


Q ss_pred             hcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          264 LLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       264 ~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +++++|+++.+|..  ...+++...++.++++++|+.
T Consensus       333 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  369 (456)
T 3krt_A          333 VTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSH  369 (456)
T ss_dssp             HEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECC
T ss_pred             HhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEec
Confidence            99999999999988  466788888999999999864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-44  Score=329.46  Aligned_cols=280  Identities=21%  Similarity=0.214  Sum_probs=231.4

Q ss_pred             eEEeeeCCCCcccceeeecCCCC-CCc------EEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVG-SDD------VSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~-~~e------vlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      +++.+. .++.+++++.+.|++. ++|      |||||++++||++|++++.|.++ .+.|.++|||++|+|+++|++++
T Consensus         4 ka~~~~-~~~~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~v~   81 (398)
T 1kol_A            4 RGVVYL-GSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVE   81 (398)
T ss_dssp             EEEEEE-ETTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTCC
T ss_pred             EEEEEe-cCCceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCCCC
Confidence            344443 4567899999999996 898      99999999999999999988653 45689999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCcccccccccc----ccccCCCCccCCcceeeEEeecc--eEEEcCCCCCccc
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF----NAIDADGTITKGGYSSYIVVHER--YCYKIANDYPLAL  157 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~~~  157 (299)
                      +|++||+|++.+. .+|+.|.+|++|++++|.+.....    .|.... ....|+|+||+.+|++  +++++|+++++++
T Consensus        82 ~~~vGDrV~~~~~-~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-~~~~G~~aey~~v~~~~~~~~~~P~~~~~~~  159 (398)
T 1kol_A           82 NLQIGDLVSVPFN-VACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM-GDWTGGQAEYVLVPYADFNLLKLPDRDKAME  159 (398)
T ss_dssp             SCCTTCEEECCSE-ECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS-CCBCCCSBSEEEESSHHHHCEECSCHHHHHH
T ss_pred             cCCCCCEEEECCc-CCCCCChHHhCcCcccCCCcccccccceeeeccC-CCCCceeeeEEEecchhCeEEECCCCcchhh
Confidence            9999999987554 589999999999999999763211    111000 1235999999999986  8999999999887


Q ss_pred             ----ccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          158 ----AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       158 ----aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                          +|++++++.|+|+++.. ..+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|++ ++++
T Consensus       160 ~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~lGa~-~i~~  236 (398)
T 1kol_A          160 KIRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQGFE-IADL  236 (398)
T ss_dssp             THHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCE-EEET
T ss_pred             hcccccccccHHHHHHHHHHH-cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HHcCCc-EEcc
Confidence                78999999999999975 456999999999999999999999999999 799999999998888 799997 6776


Q ss_pred             CCH----HHHHHhc--CCccEEEEcCCCch---------------hHHHHHHhcccCcEEEEEcCC-C------------
Q 022313          233 SDL----EQMKALG--KSLDFIIDTASGDH---------------PFDAYMSLLKVAGVYVLVGFP-S------------  278 (299)
Q Consensus       233 ~~~----~~~~~~~--~~~d~v~d~~g~~~---------------~~~~~~~~l~~~G~~v~~g~~-~------------  278 (299)
                      .+.    +.+.++.  .++|+|||++|+..               .++.++++++++|+++.+|.. .            
T Consensus       237 ~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  316 (398)
T 1kol_A          237 SLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKI  316 (398)
T ss_dssp             TSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHT
T ss_pred             CCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCccccccccccc
Confidence            542    3444443  47999999999862               588999999999999999965 1            


Q ss_pred             -ceeeChhhhhcCCeeeeee
Q 022313          279 -KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       279 -~~~~~~~~l~~~~~~~~g~  297 (299)
                       ..++++..++.|++++.|+
T Consensus       317 ~~~~~~~~~~~~~~~~~~g~  336 (398)
T 1kol_A          317 GSLSIRFGLGWAKSHSFHTG  336 (398)
T ss_dssp             TCCCCCHHHHHHTTCEEEES
T ss_pred             ccccccHHHHhhcccEEEec
Confidence             2456777788999999875

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.4e-44  Score=325.64  Aligned_cols=262  Identities=16%  Similarity=0.182  Sum_probs=223.3

Q ss_pred             CCcccccccceEEeee-----CCCCcccceee---------ecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCc
Q 022313            1 MTSETASKDCLGWAAR-----DPSGVLSPYSF---------NRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPL   65 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---------~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~   65 (299)
                      |++|+.+.+|+++.+.     +.++.+++++.         +.|+++++||+|||++++||++|++.+.|.++ ..++|.
T Consensus         2 Ms~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~   81 (349)
T 3pi7_A            2 MSPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGR   81 (349)
T ss_dssp             ---CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTS
T ss_pred             CCCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCC
Confidence            7888877778888886     46778999999         99999999999999999999999999998765 346899


Q ss_pred             cccccccEEEEEecCCC-CCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc
Q 022313           66 VPGHEIVGIVKEVGHNV-SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER  144 (299)
Q Consensus        66 ~lG~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~  144 (299)
                      ++|||++|+|+++|+++ ++|++||+|+...                                |....|+|+||+.+|++
T Consensus        82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------------g~~~~G~~aey~~v~~~  129 (349)
T 3pi7_A           82 PAGFEGVGTIVAGGDEPYAKSLVGKRVAFAT--------------------------------GLSNWGSWAEYAVAEAA  129 (349)
T ss_dssp             BCCSEEEEEEEEECSSHHHHHHTTCEEEEEC--------------------------------TTSSCCSSBSEEEEEGG
T ss_pred             CccceEEEEEEEECCCccCCCCCCCEEEEec--------------------------------cCCCCccceeeEeechH
Confidence            99999999999999999 8999999997532                                22356999999999999


Q ss_pred             eEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCC-CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH
Q 022313          145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG-KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS  222 (299)
Q Consensus       145 ~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g-~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~  222 (299)
                      .++++|+++++++||++++.+.|||++++...  +++ ++|+|+|+ |++|++++|+|+..|++|+++++++++.+.+ +
T Consensus       130 ~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~  206 (349)
T 3pi7_A          130 ACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALL-K  206 (349)
T ss_dssp             GEEECCTTCCC--GGGSSHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHH-H
T ss_pred             HeEECCCCCCHHHHhhccccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-H
Confidence            99999999999999999999999997776655  555 78888854 9999999999999999999999999999888 6


Q ss_pred             hcCCCEEEeCCCHHH---HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeCh-hhhhcCCeee
Q 022313          223 LLGADKFVVSSDLEQ---MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSP-ASLNIGNAPL  294 (299)
Q Consensus       223 ~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~-~~l~~~~~~~  294 (299)
                      ++|+++++++++.+.   +.+..  +++|++||++|+.. ...++++++++|+++.+|..  ....++. ..++.|++++
T Consensus       207 ~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i  285 (349)
T 3pi7_A          207 DIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHI  285 (349)
T ss_dssp             HHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEE
T ss_pred             HcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEE
Confidence            899999999876543   33332  58999999999887 78999999999999999976  4667888 8899999999


Q ss_pred             eeec
Q 022313          295 FRFK  298 (299)
Q Consensus       295 ~g~~  298 (299)
                      +|+.
T Consensus       286 ~g~~  289 (349)
T 3pi7_A          286 EGFW  289 (349)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            9974

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=4.9e-44  Score=322.61  Aligned_cols=259  Identities=21%  Similarity=0.263  Sum_probs=223.1

Q ss_pred             cccccccceEEeeeC--CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEec
Q 022313            3 SETASKDCLGWAARD--PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVG   79 (299)
Q Consensus         3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG   79 (299)
                      +|+.+.+|+++.+..  .++.+++.+.+.|++.++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus        22 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG  101 (353)
T 4dup_A           22 SMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVG  101 (353)
T ss_dssp             -CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEEC
T ss_pred             cCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEEC
Confidence            344444455555543  3566889999999999999999999999999999999887653 3468999999999999999


Q ss_pred             CCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccc
Q 022313           80 HNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAA  159 (299)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa  159 (299)
                      +++++|++||+|...                                   ...|+|+||+.+|++.++++|+++++++||
T Consensus       102 ~~v~~~~vGdrV~~~-----------------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa  146 (353)
T 4dup_A          102 PGVSGYAVGDKVCGL-----------------------------------ANGGAYAEYCLLPAGQILPFPKGYDAVKAA  146 (353)
T ss_dssp             TTCCSCCTTCEEEEE-----------------------------------CSSCCSBSEEEEEGGGEEECCTTCCHHHHH
T ss_pred             CCCCCCCCCCEEEEe-----------------------------------cCCCceeeEEEEcHHHcEeCCCCCCHHHHh
Confidence            999999999999642                                   235999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH-
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ-  237 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-  237 (299)
                      ++++++.|+|+++.....++++++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|++.++++.+.+. 
T Consensus       147 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~~~~~~~~~  225 (353)
T 4dup_A          147 ALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEAC-ERLGAKRGINYRSEDFA  225 (353)
T ss_dssp             TSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHH
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCCEEEeCCchHHH
Confidence            999999999999977777799999999965 9999999999999999999999999999888 6899999998876433 


Q ss_pred             --HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--Ccee-eChhhhhcCCeeeeeec
Q 022313          238 --MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVK-FSPASLNIGNAPLFRFK  298 (299)
Q Consensus       238 --~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~-~~~~~l~~~~~~~~g~~  298 (299)
                        +.+. .+++|++||++|+.. +..++++++++|+++.+|..  .... +++..++.|++++.|+.
T Consensus       226 ~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  291 (353)
T 4dup_A          226 AVIKAETGQGVDIILDMIGAAY-FERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGST  291 (353)
T ss_dssp             HHHHHHHSSCEEEEEESCCGGG-HHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECC
T ss_pred             HHHHHHhCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEe
Confidence              2222 468999999999875 99999999999999999987  3334 88889999999999874

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=9.9e-44  Score=318.32  Aligned_cols=253  Identities=20%  Similarity=0.246  Sum_probs=220.2

Q ss_pred             ccccceEEeeeC--CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313            6 ASKDCLGWAARD--PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         6 ~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      .+.+|+++.+..  .++.+++++.+.|++.++||+|||++++||++|++++.|.++ .++|.++|||++|+|+++|++++
T Consensus         5 ~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~vG~~v~   83 (334)
T 3qwb_A            5 IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVAKGKGVT   83 (334)
T ss_dssp             CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEEECTTCC
T ss_pred             CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEEECCCCC
Confidence            344455555543  334588899999999999999999999999999999988775 45799999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEee-cceEEEcCCCCCccc---cc
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVH-ERYCYKIANDYPLAL---AA  159 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~---aa  159 (299)
                      +|++||+|+..                                    ..|+|+||+.++ ++.++++|+++++++   ||
T Consensus        84 ~~~~GdrV~~~------------------------------------~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa  127 (334)
T 3qwb_A           84 NFEVGDQVAYI------------------------------------SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYA  127 (334)
T ss_dssp             SCCTTCEEEEE------------------------------------CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHH
T ss_pred             CCCCCCEEEEe------------------------------------eCCcceEEEEecCcceEEECCCCCCHHHhhhhh
Confidence            99999999742                                    259999999999 999999999999999   88


Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH-
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ-  237 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-  237 (299)
                      ++++.+.|+|+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++++.+ +++|+++++++.+.+. 
T Consensus       128 ~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~~~~~~~  206 (334)
T 3qwb_A          128 AGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEYGAEYLINASKEDIL  206 (334)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTTSCHH
T ss_pred             hhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCcEEEeCCCchHH
Confidence            899999999999988777799999999995 9999999999999999999999999988877 7899999998876433 


Q ss_pred             --HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          238 --MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       238 --~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                        +.+..  .++|++||++|+.. ++.++++++++|+++.+|..  ...+++...++.|++++.|+
T Consensus       207 ~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~  271 (334)
T 3qwb_A          207 RQVLKFTNGKGVDASFDSVGKDT-FEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRP  271 (334)
T ss_dssp             HHHHHHTTTSCEEEEEECCGGGG-HHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECC
T ss_pred             HHHHHHhCCCCceEEEECCChHH-HHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEE
Confidence              33333  57999999999854 99999999999999999988  34478888999999999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2.7e-44  Score=319.46  Aligned_cols=246  Identities=16%  Similarity=0.231  Sum_probs=203.1

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      |+++.+...++.+++.+.+.|++.++||+|||+++++|++|++.+.|.++..++|.++|||++|+|+++|+++++|++||
T Consensus         5 Mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGd   84 (315)
T 3goh_A            5 HQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKMLGR   84 (315)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGGTTC
T ss_pred             eEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCCCCC
Confidence            45666655678899999999999999999999999999999999998876667899999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|+..+                                +....|+|+||+.+|++.++++|+++++++||++++++.|||
T Consensus        85 rV~~~~--------------------------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~  132 (315)
T 3goh_A           85 RVAYHT--------------------------------SLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAW  132 (315)
T ss_dssp             EEEEEC--------------------------------CTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHH
T ss_pred             EEEEeC--------------------------------CCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHH
Confidence            997532                                113469999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEE
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      +++ ....+++|++|||+|+|++|++++|+|+..|++|++++ ++++.+.+ +++|++++++  +   .+++.+++|++|
T Consensus       133 ~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~-~~lGa~~v~~--d---~~~v~~g~Dvv~  204 (315)
T 3goh_A          133 QAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALA-AKRGVRHLYR--E---PSQVTQKYFAIF  204 (315)
T ss_dssp             HHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH-HHHTEEEEES--S---GGGCCSCEEEEE
T ss_pred             HHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH-HHcCCCEEEc--C---HHHhCCCccEEE
Confidence            999 55666999999999999999999999999999999999 88888888 6899999984  2   334478999999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeCh--hhhhcCCeeeee
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSP--ASLNIGNAPLFR  296 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~--~~l~~~~~~~~g  296 (299)
                      |++|+.. ...++++++++|+++.+|.. ....++.  ..+..+++++.|
T Consensus       205 d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  253 (315)
T 3goh_A          205 DAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEIALGA  253 (315)
T ss_dssp             CC--------TTGGGEEEEEEEEEECCC----------CCSEEEEECGGG
T ss_pred             ECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccchhhhcceeeEEEeec
Confidence            9999987 68899999999999999866 3333322  234455555544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.8e-43  Score=317.66  Aligned_cols=254  Identities=23%  Similarity=0.350  Sum_probs=214.4

Q ss_pred             cccceEEeeeC--CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCC
Q 022313            7 SKDCLGWAARD--PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         7 ~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      +.+|+++.+..  .++.+++.+.+.|++.++||+|||++++||++|++.+.|.++ ..++|.++|||++|+|+++|++++
T Consensus        19 p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~   98 (342)
T 4eye_A           19 PGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG   98 (342)
T ss_dssp             CCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTSS
T ss_pred             CcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCCC
Confidence            44455665543  356689999999999999999999999999999999988765 346899999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                       |++||+|+..                                   ...|+|+||+.++++.++++|+++++++||++++
T Consensus        99 -~~vGDrV~~~-----------------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  142 (342)
T 4eye_A           99 -IKPGDRVMAF-----------------------------------NFIGGYAERVAVAPSNILPTPPQLDDAEAVALIA  142 (342)
T ss_dssp             -CCTTCEEEEE-----------------------------------CSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTT
T ss_pred             -CCCCCEEEEe-----------------------------------cCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhh
Confidence             9999999742                                   2359999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH--HHHHH
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL--EQMKA  240 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~  240 (299)
                      ++.|+|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+.  +.+.+
T Consensus       143 ~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~v~~~~~~~~~~v~~  221 (342)
T 4eye_A          143 NYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFV-KSVGADIVLPLEEGWAKAVRE  221 (342)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEESSTTHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEecCchhHHHHHHH
Confidence            99999999977777799999999998 9999999999999999999999999999888 68999999987721  23334


Q ss_pred             hc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          241 LG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       241 ~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ..  .++|++||++|+.. +..++++++++|+++.+|..  ....+++..++.|++++.|+.
T Consensus       222 ~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  282 (342)
T 4eye_A          222 ATGGAGVDMVVDPIGGPA-FDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVA  282 (342)
T ss_dssp             HTTTSCEEEEEESCC--C-HHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECC
T ss_pred             HhCCCCceEEEECCchhH-HHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEe
Confidence            43  47999999999975 99999999999999999987  345778888999999999974

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=6.7e-44  Score=323.27  Aligned_cols=274  Identities=20%  Similarity=0.263  Sum_probs=224.6

Q ss_pred             eEEeeeCCCCcccceeeecCCCCC-CcEEEEEceeecccchhhhhcc--CCCCCCC---CccccccccEEEEEecCCCCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGS-DDVSITITHCGVCYADVIWTRN--KHGDSKY---PLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~-~evlv~v~~~~i~~~D~~~~~g--~~~~~~~---p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      +++.+....+.+++++.+.|++.+ +||+|||+++++|++|++++.|  .++...+   |.++|||++|+|++  ++ ++
T Consensus         2 kA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~~   78 (366)
T 2cdc_A            2 KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-HG   78 (366)
T ss_dssp             EEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-SS
T ss_pred             eEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-CC
Confidence            445553333338899999999999 9999999999999999999988  5543355   89999999999999  66 88


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCc-cCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTI-TKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      |++||+|++.+.. +|+.|.+|++|.+++|.+..+...|     .. ..|+|+||+.+|++.++++|++++ ++| +++.
T Consensus        79 ~~~GDrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~~~g-----~~~~~G~~aey~~v~~~~~~~iP~~l~-~~A-al~~  150 (366)
T 2cdc_A           79 FSQGDLVMPVNRR-GCGICRNCLVGRPDFCETGEFGEAG-----IHKMDGFMREWWYDDPKYLVKIPKSIE-DIG-ILAQ  150 (366)
T ss_dssp             CCTTCEEEECSEE-CCSSSHHHHTTCGGGCSSSCCEEET-----TBEECCSCBSEEEECGGGEEEECGGGT-TTG-GGHH
T ss_pred             CCCCCEEEEcCCC-CCCCChhhhCcCcccCCCCCcccCC-----ccCCCCceeEEEEechHHeEECcCCcc-hhh-hhcC
Confidence            9999999887664 8999999999999999976432101     11 459999999999999999999999 776 4778


Q ss_pred             hhHHHHHHhh--h--ccCCC--C-------CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCCC
Q 022313          164 AGITVYTPMM--R--HKMNQ--P-------GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST---SKKEEALSLLGAD  227 (299)
Q Consensus       164 ~~~ta~~al~--~--~~~~~--~-------g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~---~~~~~~~~~~g~~  227 (299)
                      ++.|+|+++.  .  ...++  +       |++|||+|+|++|++++|+|+..|++|+++++++   ++.+.+ +++|++
T Consensus       151 ~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~ga~  229 (366)
T 2cdc_A          151 PLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EETKTN  229 (366)
T ss_dssp             HHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHHTCE
T ss_pred             cHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHhCCc
Confidence            9999999997  3  44557  8       9999999999999999999999999999999998   787776 689998


Q ss_pred             EEEeCCC--HHHHHHhcCCccEEEEcCCCchhH-HHHHHhcccCcEEEEEcCC-Cc-eeeChhh---hhcCCeeeeeec
Q 022313          228 KFVVSSD--LEQMKALGKSLDFIIDTASGDHPF-DAYMSLLKVAGVYVLVGFP-SK-VKFSPAS---LNIGNAPLFRFK  298 (299)
Q Consensus       228 ~v~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~-~~-~~~~~~~---l~~~~~~~~g~~  298 (299)
                      ++ + .+  .+.+.+..+++|++||++|....+ +.++++++++|+++.+|.. .. .++++..   ++.|++++.|+.
T Consensus       230 ~v-~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~  306 (366)
T 2cdc_A          230 YY-N-SSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLV  306 (366)
T ss_dssp             EE-E-CTTCSHHHHHHHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECC
T ss_pred             ee-c-hHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEec
Confidence            88 7 54  122322236899999999997657 8999999999999999988 33 6788887   899999999864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.8e-43  Score=315.25  Aligned_cols=256  Identities=21%  Similarity=0.352  Sum_probs=218.7

Q ss_pred             ccccceEEeeeCCCCcccc-eeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCC
Q 022313            6 ASKDCLGWAARDPSGVLSP-YSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      ++||+..+.-.+.++.+++ .+.+.|+++++||+|||+++++|++|++++.|.++ ...+|.++|||++|+|+++|++++
T Consensus        28 ~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v~  107 (351)
T 1yb5_A           28 KLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS  107 (351)
T ss_dssp             CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             ceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCCC
Confidence            3444433332223456788 79999999999999999999999999999988664 245789999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      +|++||+|+..+                                  ...|+|+||+.+|++.++++|+++++++||++++
T Consensus       108 ~~~vGdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~  153 (351)
T 1yb5_A          108 AFKKGDRVFTSS----------------------------------TISGGYAEYALAADHTVYKLPEKLDFKQGAAIGI  153 (351)
T ss_dssp             TCCTTCEEEESC----------------------------------CSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHH
T ss_pred             CCCCCCEEEEeC----------------------------------CCCCcceeEEEECHHHeEECCCCCCHHHHHhhhh
Confidence            999999997421                                  1249999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH---H
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM---K  239 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~  239 (299)
                      ++.|||+++.....++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++.+++..+.+..   .
T Consensus       154 ~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~d~~~~~~~~~~~  232 (351)
T 1yb5_A          154 PYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHEVFNHREVNYIDKIK  232 (351)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSTTHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHcCCCEEEeCCCchHHHHHH
Confidence            99999999986666799999999998 9999999999999999999999999888877 78999999987764433   3


Q ss_pred             Hhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          240 ALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       240 ~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +..  +++|++||++|+.. +..++++++++|+++.+|.....++++..++.|++++.|+
T Consensus       233 ~~~~~~~~D~vi~~~G~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~i~g~  291 (351)
T 1yb5_A          233 KYVGEKGIDIIIEMLANVN-LSKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGV  291 (351)
T ss_dssp             HHHCTTCEEEEEESCHHHH-HHHHHHHEEEEEEEEECCCCSCEEECTHHHHTTTCEEEEC
T ss_pred             HHcCCCCcEEEEECCChHH-HHHHHHhccCCCEEEEEecCCCCccCHHHHHhCCcEEEEE
Confidence            322  48999999999865 8899999999999999997655678888889999999987

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=3.4e-43  Score=313.73  Aligned_cols=254  Identities=25%  Similarity=0.306  Sum_probs=220.0

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      ||+..+.-++.++.+++.+.+.|+++++||+|||+++++|++|++++.|.++..++|.++|||++|+|+++|+++++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            55554444445566899999999999999999999999999999999998776678999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||+|....                                  ...|+|+||+.+|+++++++|+++++++||++++.+.|
T Consensus        82 GdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~t  127 (325)
T 3jyn_A           82 GDRVAYGT----------------------------------GPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLT  127 (325)
T ss_dssp             TCEEEESS----------------------------------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEec----------------------------------CCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHH
Confidence            99997411                                  23599999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc-
Q 022313          168 VYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG-  242 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~-  242 (299)
                      +|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++++.+ +++|+++++++.+.+.   +.+.. 
T Consensus       128 a~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~  206 (325)
T 3jyn_A          128 VQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA-KALGAWETIDYSHEDVAKRVLELTD  206 (325)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHhC
Confidence            9999988777899999999995 9999999999999999999999999998888 6899999998876433   33333 


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-Cc-eeeChhhhhcC-Ceeeeee
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SK-VKFSPASLNIG-NAPLFRF  297 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~-~~~~~~~l~~~-~~~~~g~  297 (299)
                       +++|++||++|+.. +..++++++++|+++.+|.. .. ..+++..++.| ++++.++
T Consensus       207 ~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~  264 (325)
T 3jyn_A          207 GKKCPVVYDGVGQDT-WLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRP  264 (325)
T ss_dssp             TCCEEEEEESSCGGG-HHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECC
T ss_pred             CCCceEEEECCChHH-HHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEee
Confidence             58999999999954 99999999999999999988 33 46788888877 6776543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=1e-42  Score=315.97  Aligned_cols=262  Identities=15%  Similarity=0.102  Sum_probs=215.0

Q ss_pred             cccccccceEEeeeCCCCcccce-eeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCC
Q 022313            3 SETASKDCLGWAARDPSGVLSPY-SFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      +|+.+.+|+++.+. .++.++++ +.+.|+++++||||||++++||++|++++.+.   ...|.++|||++|+|+++|++
T Consensus         5 tm~~p~~mkA~v~~-~~~~l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~   80 (371)
T 3gqv_A            5 PFIPPPQQTALTVN-DHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSD   80 (371)
T ss_dssp             CCCCCSCEEEEEEC-TTSCEEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTT
T ss_pred             CCCCchhceeEEEc-CCCceEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCC
Confidence            36666677777774 66889998 99999999999999999999999999988662   346899999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccccc
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPL  161 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  161 (299)
                      +++|++||+|..        .|..|..+                   ....|+|+||+.+|++.++++|+++++++||.+
T Consensus        81 v~~~~~GdrV~~--------~~~~~~~~-------------------~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~  133 (371)
T 3gqv_A           81 VTHIQVGDRVYG--------AQNEMCPR-------------------TPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAAL  133 (371)
T ss_dssp             CCSCCTTCEEEE--------ECCTTCTT-------------------CTTCCSSBSEEECCTTCEEECCTTCCHHHHHTS
T ss_pred             CCCCCCCCEEEE--------eccCCCCC-------------------CCCCCcCcCeEEEchhheEECCCCCCHHHHhhh
Confidence            999999999953        23334332                   134699999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhc-cCC-----------CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE
Q 022313          162 LCAGITVYTPMMRH-KMN-----------QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       162 ~~~~~ta~~al~~~-~~~-----------~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      ++++.|+|+++... ..+           ++|++|||+|+ |++|++++|+|+..|++|+++. ++++.+.+ +++|+++
T Consensus       134 ~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~-~~lGa~~  211 (371)
T 3gqv_A          134 PAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLA-KSRGAEE  211 (371)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHTTCSE
T ss_pred             hhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHH-HHcCCcE
Confidence            99999999999665 332           89999999998 8999999999999999999887 67777766 7999999


Q ss_pred             EEeCCCHHH---HHHhc-CCccEEEEcCCCchhHHHHHHhc-ccCcEEEEEcCC-C----c--eeeC---hhhhhcCCee
Q 022313          229 FVVSSDLEQ---MKALG-KSLDFIIDTASGDHPFDAYMSLL-KVAGVYVLVGFP-S----K--VKFS---PASLNIGNAP  293 (299)
Q Consensus       229 v~~~~~~~~---~~~~~-~~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~-~----~--~~~~---~~~l~~~~~~  293 (299)
                      ++++++.+.   +.++. +++|++||++|+...++.+++++ +++|+++.+|.. .    .  .+.+   ...++.|+++
T Consensus       212 vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~  291 (371)
T 3gqv_A          212 VFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGST  291 (371)
T ss_dssp             EEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBS
T ss_pred             EEECCCchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeecccccc
Confidence            999887543   44443 56999999999977799999999 699999999965 1    1  2222   2467889999


Q ss_pred             eeee
Q 022313          294 LFRF  297 (299)
Q Consensus       294 ~~g~  297 (299)
                      +.|+
T Consensus       292 ~~g~  295 (371)
T 3gqv_A          292 WPAP  295 (371)
T ss_dssp             CSTT
T ss_pred             cccc
Confidence            9876

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.9e-43  Score=328.30  Aligned_cols=284  Identities=19%  Similarity=0.215  Sum_probs=231.7

Q ss_pred             cccccceEEeeeCCC-------------CcccceeeecCCCCCCcEEEEEceeecccchhhhhc----------------
Q 022313            5 TASKDCLGWAARDPS-------------GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTR----------------   55 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~----------------   55 (299)
                      +.+.+|+++.+....             +.+++++.+.|+++++||+|||++++||++|++...                
T Consensus        20 ~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~   99 (447)
T 4a0s_A           20 PVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQ   99 (447)
T ss_dssp             CCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTT
T ss_pred             CCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhccc
Confidence            345556666664433             378999999999999999999999999999975421                


Q ss_pred             cCCC-CCCCC-ccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCC
Q 022313           56 NKHG-DSKYP-LVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKG  133 (299)
Q Consensus        56 g~~~-~~~~p-~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g  133 (299)
                      |.+. ...+| .++|||++|+|+++|+++++|++||+|++.+.. .|+.|. |.++.+..|.+....  |..    ...|
T Consensus       100 g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~-~~~~~~-~~~~~~~~c~~~~~~--G~~----~~~G  171 (447)
T 4a0s_A          100 GGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAH-VDEQEP-ATHGDGMLGTEQRAW--GFE----TNFG  171 (447)
T ss_dssp             CGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEE-CCTTSG-GGGTCTTCSTTCEET--TTT----SSSC
T ss_pred             CccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCc-CcCccc-ccccccccccccccc--ccc----CCCC
Confidence            1111 12456 699999999999999999999999999887653 555554 666788899876432  111    1259


Q ss_pred             cceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhc--cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE
Q 022313          134 GYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRH--KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL  210 (299)
Q Consensus       134 ~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~--~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~  210 (299)
                      +|+||+.+|+++++++|+++++++||.+++++.|+|+++...  ..+++|++|||+|+ |++|++++|+|+..|++|+++
T Consensus       172 ~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~  251 (447)
T 4a0s_A          172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV  251 (447)
T ss_dssp             SSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEE
Confidence            999999999999999999999999999999999999998643  56699999999998 999999999999999999999


Q ss_pred             eCCchHHHHHHHhcCCCEEEeCCCH---------------------HHHHHh-cCCccEEEEcCCCchhHHHHHHhcccC
Q 022313          211 STSTSKKEEALSLLGADKFVVSSDL---------------------EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVA  268 (299)
Q Consensus       211 ~~~~~~~~~~~~~~g~~~v~~~~~~---------------------~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~  268 (299)
                      ++++++++.+ +++|++++++..+.                     +.+.+. .+++|++||++|+.. ++.++++++++
T Consensus       252 ~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~-~~~~~~~l~~~  329 (447)
T 4a0s_A          252 VSSAQKEAAV-RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARRG  329 (447)
T ss_dssp             ESSHHHHHHH-HHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHH-HHHHHHHSCTT
T ss_pred             eCCHHHHHHH-HhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchH-HHHHHHHHhcC
Confidence            9999888888 78999998875432                     222333 468999999999864 89999999999


Q ss_pred             cEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          269 GVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       269 G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      |+++.+|..  ....++...++.+++++.|+.
T Consensus       330 G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  361 (447)
T 4a0s_A          330 GTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSH  361 (447)
T ss_dssp             CEEEESCCTTCSEEEEEHHHHHHTTCEEEECC
T ss_pred             CEEEEEecCCCcccccCHHHHHhCCCEEEecC
Confidence            999999987  466788888999999999864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1.3e-42  Score=314.27  Aligned_cols=256  Identities=21%  Similarity=0.274  Sum_probs=219.6

Q ss_pred             cccceEEeeeC-----CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCC
Q 022313            7 SKDCLGWAARD-----PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus         7 ~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      ||+|+++.+.+     .++.+++.+.+.|++.++||+|||++++||++|++.+.|.++...+|.++|||++|+|+++|++
T Consensus        20 m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~   99 (363)
T 4dvj_A           20 FQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVGPD   99 (363)
T ss_dssp             CCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEECTT
T ss_pred             hheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeCCC
Confidence            45566666643     3677889999999999999999999999999999999988766678999999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccccc
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPL  161 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  161 (299)
                      +++|++||+|+...                                +....|+|+||+.+|++.++++|+++++++||.+
T Consensus       100 v~~~~vGdrV~~~~--------------------------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  147 (363)
T 4dvj_A          100 VTLFRPGDEVFYAG--------------------------------SIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAAL  147 (363)
T ss_dssp             CCSCCTTCEEEECC--------------------------------CTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTS
T ss_pred             CCCCCCCCEEEEcc--------------------------------CCCCCccceEEEEeCHHHeeECCCCCCHHHHHhh
Confidence            99999999997421                                1134699999999999999999999999999999


Q ss_pred             chhhHHHHHHhhhccCCC-----CCCEEEEEc-CChHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC
Q 022313          162 LCAGITVYTPMMRHKMNQ-----PGKSLGVIG-LGGLGHMAVKFGKA-FGLNVTVLSTSTSKKEEALSLLGADKFVVSSD  234 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~-----~g~~vlI~G-~g~~G~~a~~~a~~-~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~  234 (299)
                      ++++.|+|+++.....++     +|++|||+| +|++|++++|+|+. .|++|+++++++++.+.+ +++|+++++++.+
T Consensus       148 ~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~-~~lGad~vi~~~~  226 (363)
T 4dvj_A          148 PLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV-KSLGAHHVIDHSK  226 (363)
T ss_dssp             HHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH-HHTTCSEEECTTS
T ss_pred             hhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH-HHcCCCEEEeCCC
Confidence            999999999997766667     899999999 49999999999998 588999999999998888 6899999998875


Q ss_pred             H--HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          235 L--EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       235 ~--~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .  +.+.++. +++|+|||++|+...++.++++++++|+++.+|..  .++++..++.|++++.|+
T Consensus       227 ~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~--~~~~~~~~~~k~~~i~~~  290 (363)
T 4dvj_A          227 PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDP--SAFDIMLFKRKAVSIHHE  290 (363)
T ss_dssp             CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCC--SSCCGGGGTTTTCEEEEC
T ss_pred             CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCC--CccchHHHhhccceEEEE
Confidence            2  2333333 58999999999886689999999999999999754  356777888999999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=5.6e-42  Score=308.35  Aligned_cols=253  Identities=22%  Similarity=0.286  Sum_probs=217.2

Q ss_pred             cceEEeeeC-----CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313            9 DCLGWAARD-----PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         9 ~~~~~~~~~-----~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      +|+++.+..     .++.+++.+.+.|+++++||+|||++++||++|++.+.|.  ....|.++|||++|+|+++|++++
T Consensus         2 ~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v~   79 (346)
T 3fbg_A            2 SLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEVT   79 (346)
T ss_dssp             CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTCC
T ss_pred             CcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCCC
Confidence            345555543     4578999999999999999999999999999999988876  356799999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      +|++||+|+...                                +....|+|+||+.+|++.++++|+++++++||.+++
T Consensus        80 ~~~~GdrV~~~~--------------------------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  127 (346)
T 3fbg_A           80 MFNQGDIVYYSG--------------------------------SPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPL  127 (346)
T ss_dssp             SCCTTCEEEECC--------------------------------CTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHH
T ss_pred             cCCCCCEEEEcC--------------------------------CCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcch
Confidence            999999997421                                113469999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCC------CCCEEEEEc-CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH-
Q 022313          164 AGITVYTPMMRHKMNQ------PGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL-  235 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~------~g~~vlI~G-~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-  235 (299)
                      ++.|||+++.....++      +|++|||+| +|++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++. 
T Consensus       128 ~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~  206 (346)
T 3fbg_A          128 TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT-KKMGADIVLNHKESL  206 (346)
T ss_dssp             HHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH-HHHTCSEEECTTSCH
T ss_pred             hHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEEECCccH
Confidence            9999999997777767      999999995 59999999999999999999999999988888 68999999988752 


Q ss_pred             -HHHHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          236 -EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       236 -~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                       +.+.+. .+++|++|||+|+...++.++++++++|+++.+|.. ..++++..++.|++++.|+
T Consensus       207 ~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~-~~~~~~~~~~~~~~~~~~~  269 (346)
T 3fbg_A          207 LNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF-ENDQDLNALKPKSLSFSHE  269 (346)
T ss_dssp             HHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCC-SSCBCGGGGTTTTCEEEEC
T ss_pred             HHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCC-CCCCccccccccceEEEEE
Confidence             233334 358999999999887679999999999999988754 3456777888899999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=6.5e-43  Score=315.74  Aligned_cols=258  Identities=23%  Similarity=0.260  Sum_probs=213.5

Q ss_pred             cccccccceEEeeeCCCCc---ccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEe
Q 022313            3 SETASKDCLGWAARDPSGV---LSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEV   78 (299)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~v   78 (299)
                      +|..+  |+++.+....+.   +++++.+.|+++++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++
T Consensus        22 ~m~~~--mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~v   99 (357)
T 1zsy_A           22 SMPAR--VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAV   99 (357)
T ss_dssp             CCCCC--EEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEE
T ss_pred             hCchh--hEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEe
Confidence            44444  455555433332   788899999999999999999999999999999887653 257899999999999999


Q ss_pred             cCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc
Q 022313           79 GHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA  158 (299)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a  158 (299)
                      |+++++|++||+|+..+                                  ...|+|+||+.+|++.++++|+++++++|
T Consensus       100 G~~v~~~~vGdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~iP~~l~~~~A  145 (357)
T 1zsy_A          100 GSNVTGLKPGDWVIPAN----------------------------------AGLGTWRTEAVFSEEALIQVPSDIPLQSA  145 (357)
T ss_dssp             CTTCCSCCTTCEEEESS----------------------------------SCSCCSBSEEEEEGGGEEEECSSSCHHHH
T ss_pred             CCCCCCCCCCCEEEEcC----------------------------------CCCccceeEEecCHHHcEECCCCCCHHHH
Confidence            99999999999997421                                  12499999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch----HHHHHHHhcCCCEEEeCC
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS----KKEEALSLLGADKFVVSS  233 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~----~~~~~~~~~g~~~v~~~~  233 (299)
                      |.+++++.|||+++.....+++|++|||+|+ |++|++++|+|+..|+++++++++++    +.+.+ +++|++++++++
T Consensus       146 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~-~~lGa~~vi~~~  224 (357)
T 1zsy_A          146 ATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRL-KSLGAEHVITEE  224 (357)
T ss_dssp             HHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHH-HHTTCSEEEEHH
T ss_pred             hhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHH-HhcCCcEEEecC
Confidence            9999999999999987777799999999998 99999999999999998888876543    23444 789999999864


Q ss_pred             CH--HHHHHhc---CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          234 DL--EQMKALG---KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       234 ~~--~~~~~~~---~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.  +.+.++.   .++|+|||++|+.. ...++++++++|+++.+|..  ....+++..++.|++++.|+.
T Consensus       225 ~~~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  295 (357)
T 1zsy_A          225 ELRRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFW  295 (357)
T ss_dssp             HHHSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECC
T ss_pred             cchHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEE
Confidence            32  1223332   25999999999877 56799999999999999876  466788888889999999863

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=2.5e-42  Score=311.60  Aligned_cols=253  Identities=20%  Similarity=0.242  Sum_probs=216.7

Q ss_pred             cceEEeeeCC--CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCC-CC
Q 022313            9 DCLGWAARDP--SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNV-SR   84 (299)
Q Consensus         9 ~~~~~~~~~~--~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v-~~   84 (299)
                      +|+++.+...  ++.+++.+.+.|+++++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++ ++
T Consensus        22 ~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~  101 (354)
T 2j8z_A           22 SMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGH  101 (354)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSCC--C
T ss_pred             heeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCCcCCC
Confidence            3445554333  335888999999999999999999999999999999887653 3468999999999999999999 99


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchh
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCA  164 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  164 (299)
                      |++||+|+..                                   ...|+|+||+.+|++.++++|+++++++||+++++
T Consensus       102 ~~vGdrV~~~-----------------------------------~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~  146 (354)
T 2j8z_A          102 WKIGDTAMAL-----------------------------------LPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEA  146 (354)
T ss_dssp             CCTTCEEEEE-----------------------------------CSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHH
T ss_pred             CCCCCEEEEe-----------------------------------cCCCcceeEEEeCHHHcEECCCCCCHHHHHhccch
Confidence            9999999742                                   12489999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHH
Q 022313          165 GITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKA  240 (299)
Q Consensus       165 ~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~  240 (299)
                      +.|||+++.....++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++.+++..+.+.   +.+
T Consensus       147 ~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~  225 (354)
T 2j8z_A          147 WLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLGAAAGFNYKKEDFSEATLK  225 (354)
T ss_dssp             HHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCChHHHHHHHH
Confidence            9999999976666799999999995 9999999999999999999999999888888 7899999988776433   333


Q ss_pred             hc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeCh-hhhhcCCeeeeeec
Q 022313          241 LG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSP-ASLNIGNAPLFRFK  298 (299)
Q Consensus       241 ~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~-~~l~~~~~~~~g~~  298 (299)
                      ..  +++|++||++|+.. +..++++++++|+++.+|..  ...++++ ..++.|++++.|+.
T Consensus       226 ~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~  287 (354)
T 2j8z_A          226 FTKGAGVNLILDCIGGSY-WEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSL  287 (354)
T ss_dssp             HTTTSCEEEEEESSCGGG-HHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECC
T ss_pred             HhcCCCceEEEECCCchH-HHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEE
Confidence            33  47999999999975 89999999999999999987  3456777 78889999999863

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=3.8e-42  Score=309.12  Aligned_cols=259  Identities=23%  Similarity=0.243  Sum_probs=213.2

Q ss_pred             CCcccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC--CCCCCccccccccEEEEEe
Q 022313            1 MTSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG--DSKYPLVPGHEIVGIVKEV   78 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~--~~~~p~~lG~e~~G~V~~v   78 (299)
                      |+.++  .+|+++.+....+.+++.+.+.|++.++||||||+++++|++|++++.|...  ..++|.++|||++|+|+++
T Consensus         1 Ms~~~--~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~v   78 (343)
T 3gaz_A            1 MSLTT--PTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAV   78 (343)
T ss_dssp             -------CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEE
T ss_pred             CCCCc--hhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEE
Confidence            54333  3455566655555599999999999999999999999999999999988643  2567999999999999999


Q ss_pred             cCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc
Q 022313           79 GHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA  158 (299)
Q Consensus        79 G~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a  158 (299)
                      |+++++|++||+|.....            +              .    ....|+|+||+.+|++.++++|+++++++|
T Consensus        79 G~~v~~~~vGdrV~~~~~------------g--------------~----~~~~G~~aey~~v~~~~~~~~P~~~~~~~a  128 (343)
T 3gaz_A           79 GPEVDSFRVGDAVFGLTG------------G--------------V----GGLQGTHAQFAAVDARLLASKPAALTMRQA  128 (343)
T ss_dssp             CTTCCSCCTTCEEEEECC------------S--------------S----TTCCCSSBSEEEEEGGGEEECCTTSCHHHH
T ss_pred             CCCCCCCCCCCEEEEEeC------------C--------------C----CCCCcceeeEEEecHHHeeeCCCCCCHHHH
Confidence            999999999999964110            0              0    024699999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC--H
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--L  235 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~--~  235 (299)
                      |.+++++.|+|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++ .++++++.+ +++|++. ++..+  .
T Consensus       129 a~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~lGa~~-i~~~~~~~  205 (343)
T 3gaz_A          129 SVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDLGATP-IDASREPE  205 (343)
T ss_dssp             HTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHHTSEE-EETTSCHH
T ss_pred             HHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHcCCCE-eccCCCHH
Confidence            9999999999999966666799999999995 999999999999999999999 778888777 7899988 66222  1


Q ss_pred             HHHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          236 EQMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       236 ~~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.+.+..  .++|++||++|+.. +..++++++++|+++.+|...  .+++..++.|++++.|+
T Consensus       206 ~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~g~  266 (343)
T 3gaz_A          206 DYAAEHTAGQGFDLVYDTLGGPV-LDASFSAVKRFGHVVSCLGWG--THKLAPLSFKQATYSGV  266 (343)
T ss_dssp             HHHHHHHTTSCEEEEEESSCTHH-HHHHHHHEEEEEEEEESCCCS--CCCCHHHHHTTCEEEEC
T ss_pred             HHHHHHhcCCCceEEEECCCcHH-HHHHHHHHhcCCeEEEEcccC--ccccchhhhcCcEEEEE
Confidence            2333332  58999999999865 999999999999999998775  45677888899999885

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2.4e-42  Score=310.08  Aligned_cols=252  Identities=19%  Similarity=0.183  Sum_probs=213.4

Q ss_pred             ccceEEeeeCCCCc---ccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCC
Q 022313            8 KDCLGWAARDPSGV---LSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         8 ~~~~~~~~~~~~~~---~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      |+++++.+....++   +++++.+.|++.++||+|||++++||++|++.+.|.++. .++|.++|||++|+|+++|++++
T Consensus         3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~   82 (340)
T 3gms_A            3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS   82 (340)
T ss_dssp             CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred             cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence            45666666544443   889999999999999999999999999999999987653 47899999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      +|++||+|+..                                   ...|+|+||+.+|++.++++|+++++++||++++
T Consensus        83 ~~~vGdrV~~~-----------------------------------~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~  127 (340)
T 3gms_A           83 RELIGKRVLPL-----------------------------------RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYI  127 (340)
T ss_dssp             GGGTTCEEEEC-----------------------------------SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSH
T ss_pred             CCCCCCEEEec-----------------------------------CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcc
Confidence            99999999631                                   2359999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HH
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MK  239 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~  239 (299)
                      .+.|+|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+.+.   +.
T Consensus       128 ~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lga~~~~~~~~~~~~~~~~  206 (340)
T 3gms_A          128 NPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEEL-LRLGAAYVIDTSTAPLYETVM  206 (340)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEETTTSCHHHHHH
T ss_pred             hHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhCCCcEEEeCCcccHHHHHH
Confidence            99999999977777799999999998 5999999999999999999999999999888 6899999998876433   33


Q ss_pred             Hhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhc-CCeeeee
Q 022313          240 ALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNI-GNAPLFR  296 (299)
Q Consensus       240 ~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~-~~~~~~g  296 (299)
                      +..  .++|++||++|+.. ...++++++++|+++.+|......+++..+.. +++.+..
T Consensus       207 ~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~  265 (340)
T 3gms_A          207 ELTNGIGADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANI  265 (340)
T ss_dssp             HHTTTSCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTSCCCCHHHHHHTSCCEEEE
T ss_pred             HHhCCCCCcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCCCCCCHHHhhhcccceEEE
Confidence            343  48999999999987 66777999999999999988434455554442 3444444

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=3.3e-42  Score=306.83  Aligned_cols=255  Identities=18%  Similarity=0.196  Sum_probs=211.3

Q ss_pred             cccceEEeeeCC--CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC-----CCCCCCccccccccEEEEEec
Q 022313            7 SKDCLGWAARDP--SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH-----GDSKYPLVPGHEIVGIVKEVG   79 (299)
Q Consensus         7 ~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~-----~~~~~p~~lG~e~~G~V~~vG   79 (299)
                      ||+|+++.+...  ++.+++++.+.|++.++||||||+++++|++|++.+.|..     ....+|.++|||++|+|+++|
T Consensus         4 m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            4 MKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             -CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             cccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            445666666443  4448899999999999999999999999999999988731     135679999999999999999


Q ss_pred             CCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccc
Q 022313           80 HNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAA  159 (299)
Q Consensus        80 ~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa  159 (299)
                      +++++|++||+|+..+..                               ....|+|+||+.++++.++++|+++++++||
T Consensus        84 ~~v~~~~~GdrV~~~~~~-------------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa  132 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGF-------------------------------PDHPCCYAEYVCASPDTIIQKLEKLSFLQAA  132 (321)
T ss_dssp             TTCCSCCTTCEEEEECST-------------------------------TTCCCCSBSEEEECGGGEEECCTTSCHHHHH
T ss_pred             CCCCCCCCCCEEEEccCC-------------------------------CCCCCcceEEEEecHHHhccCCCCCCHHHHh
Confidence            999999999999753310                               0235999999999999999999999999999


Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEc-CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G-~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .+++++.|+|++++ ...+++|++|||+| +|++|++++|+|+..|++|+++++ +++.+.+ +++|+++++++.+.+.+
T Consensus       133 ~l~~~~~ta~~al~-~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~~~~-~~lGa~~~i~~~~~~~~  209 (321)
T 3tqh_A          133 SLPTAGLTALQALN-QAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFL-KALGAEQCINYHEEDFL  209 (321)
T ss_dssp             HSHHHHHHHHHHHH-HTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHHHHH-HHHTCSEEEETTTSCHH
T ss_pred             hhhhHHHHHHHHHH-hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchHHHH-HHcCCCEEEeCCCcchh
Confidence            99999999999994 45569999999997 599999999999999999998874 4555555 78999999998876634


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+..+++|++||++|+.. ...++++++++|+++.+|...... .+..+..+++++.|+
T Consensus       210 ~~~~~g~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~~~  266 (321)
T 3tqh_A          210 LAISTPVDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTITAGR-VIEVAKQKHRRAFGL  266 (321)
T ss_dssp             HHCCSCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTTHHH-HHHHHHHTTCEEECC
T ss_pred             hhhccCCCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCCchh-hhhhhhhcceEEEEE
Confidence            444479999999999987 699999999999999998762211 123466788888885

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1e-41  Score=308.74  Aligned_cols=255  Identities=17%  Similarity=0.163  Sum_probs=215.2

Q ss_pred             ccceEEeeeCCCC---cccceeeecCCCC--CCcEEEEEceeecccchhhhhccCCCC-CCCC---------cccccccc
Q 022313            8 KDCLGWAARDPSG---VLSPYSFNRRAVG--SDDVSITITHCGVCYADVIWTRNKHGD-SKYP---------LVPGHEIV   72 (299)
Q Consensus         8 ~~~~~~~~~~~~~---~~~~~~~~~p~~~--~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p---------~~lG~e~~   72 (299)
                      |+|+++.+.+..+   .+++++.+.|++.  ++||+|||++++||++|++.+.|.++. ..+|         .++|||++
T Consensus         2 ~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~   81 (364)
T 1gu7_A            2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (364)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeE
Confidence            4456666644433   2888999999887  999999999999999999999886642 3456         89999999


Q ss_pred             EEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCC-
Q 022313           73 GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN-  151 (299)
Q Consensus        73 G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~-  151 (299)
                      |+|+++|+++++|++||+|+..+                                  ...|+|+||+.+|++.++++|+ 
T Consensus        82 G~V~~vG~~v~~~~vGdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~~P~~  127 (364)
T 1gu7_A           82 FEVIKVGSNVSSLEAGDWVIPSH----------------------------------VNFGTWRTHALGNDDDFIKLPNP  127 (364)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESS----------------------------------SCCCCSBSEEEEEGGGEEEECCH
T ss_pred             EEEEEeCCCCCcCCCCCEEEecC----------------------------------CCCCcchheEecCHHHeEEcCCc
Confidence            99999999999999999997421                                  1249999999999999999998 


Q ss_pred             ----------CCCcccccccchhhHHHHHHhhhccCCCCC-CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH---
Q 022313          152 ----------DYPLALAAPLLCAGITVYTPMMRHKMNQPG-KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK---  216 (299)
Q Consensus       152 ----------~~~~~~aa~~~~~~~ta~~al~~~~~~~~g-~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~---  216 (299)
                                ++++++||.+++++.|||+++.....+++| ++|||+|+ |++|++++|+|+..|+++++++++.++   
T Consensus       128 ~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~  207 (364)
T 1gu7_A          128 AQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE  207 (364)
T ss_dssp             HHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred             cccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHH
Confidence                      899999999999999999999887667999 99999998 999999999999999999999876654   


Q ss_pred             -HHHHHHhcCCCEEEeCCC---H---HHHHHh----cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeC
Q 022313          217 -KEEALSLLGADKFVVSSD---L---EQMKAL----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFS  283 (299)
Q Consensus       217 -~~~~~~~~g~~~v~~~~~---~---~~~~~~----~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~  283 (299)
                       .+.+ +++|+++++++++   .   +.+.++    .+++|+|||++|+.. ...++++++++|+++.+|..  ...+++
T Consensus       208 ~~~~~-~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~  285 (364)
T 1gu7_A          208 VVASL-KELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIP  285 (364)
T ss_dssp             HHHHH-HHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEEC
T ss_pred             HHHHH-HhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccCCEEEEecCCCCCCcccC
Confidence             4455 7899999998753   2   234443    358999999999987 55889999999999999987  467788


Q ss_pred             hhhhhcCCeeeeeec
Q 022313          284 PASLNIGNAPLFRFK  298 (299)
Q Consensus       284 ~~~l~~~~~~~~g~~  298 (299)
                      +..++.|++++.|+.
T Consensus       286 ~~~~~~~~~~~~g~~  300 (364)
T 1gu7_A          286 TSLYIFKNFTSAGFW  300 (364)
T ss_dssp             HHHHHHSCCEEEECC
T ss_pred             HHHHhhcCcEEEEEc
Confidence            888899999999863

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=9.1e-42  Score=305.45  Aligned_cols=254  Identities=21%  Similarity=0.267  Sum_probs=212.4

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC--CC-CCCCccccccccEEEEEecCCCCC
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH--GD-SKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~--~~-~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      ||+..+.-.+.++.+++++.+.|++.++||+|||+++++|++|++.+.|.+  .. ..+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            444433322334568889999999999999999999999999999998865  21 457899999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccc--ccccc
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLAL--AAPLL  162 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~--aa~~~  162 (299)
                      |++||+|...+                                  ...|+|+||+.+|++.++++|+++++++  ||+++
T Consensus        82 ~~~GdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~  127 (333)
T 1wly_A           82 FTVGERVCTCL----------------------------------PPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLM  127 (333)
T ss_dssp             CCTTCEEEECS----------------------------------SSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHH
T ss_pred             CCCCCEEEEec----------------------------------CCCCcceeEEEecHHHcEeCCCCCChHHhCccchh
Confidence            99999996411                                  0148999999999999999999999999  99999


Q ss_pred             hhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---H
Q 022313          163 CAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---M  238 (299)
Q Consensus       163 ~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~  238 (299)
                      +++.|+|+++.....++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++.+++..+.+.   +
T Consensus       128 ~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~i  206 (333)
T 1wly_A          128 LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA-RKLGCHHTINYSTQDFAEVV  206 (333)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEECCCHHHHHHH
Confidence            999999999986666799999999997 9999999999999999999999998888888 5799999888765433   3


Q ss_pred             HHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChh-hhhcCC--eeeeee
Q 022313          239 KAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPA-SLNIGN--APLFRF  297 (299)
Q Consensus       239 ~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~-~l~~~~--~~~~g~  297 (299)
                      .+.  ..++|++||++|+. .++.++++++++|+++.+|..  ...++++. .++.|+  ++++|+
T Consensus       207 ~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~  271 (333)
T 1wly_A          207 REITGGKGVDVVYDSIGKD-TLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPA  271 (333)
T ss_dssp             HHHHTTCCEEEEEECSCTT-THHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCC
T ss_pred             HHHhCCCCCeEEEECCcHH-HHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEe
Confidence            333  25799999999994 599999999999999999987  34567777 788899  999885

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2e-42  Score=308.62  Aligned_cols=258  Identities=19%  Similarity=0.261  Sum_probs=215.8

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      ||+..+.-.+.+..+++++.+.|+++++||+|||+++++|++|++.+.|.++. .++|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            34444443333445899999999999999999999999999999999987653 5689999999999999998  57899


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|++.+    |.                         .|....|+|+||+.+|++.++++|+++++++||.+++.+.
T Consensus        79 vGdrV~~~~----~~-------------------------~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~  129 (324)
T 3nx4_A           79 AGQEVLLTG----WG-------------------------VGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGF  129 (324)
T ss_dssp             TTCEEEEEC----TT-------------------------BTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEcc----cc-------------------------cCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHH
Confidence            999997532    10                         0224569999999999999999999999999999999999


Q ss_pred             HHHHHhhhc--cCCCCCC-EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhc
Q 022313          167 TVYTPMMRH--KMNQPGK-SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALG  242 (299)
Q Consensus       167 ta~~al~~~--~~~~~g~-~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  242 (299)
                      |+|.+++..  ..+++++ +|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++.+.++++.
T Consensus       130 ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~~~  208 (324)
T 3nx4_A          130 TAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL-KSLGANRILSRDEFAESRPLE  208 (324)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTCSEEEEGGGSSCCCSSC
T ss_pred             HHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCCEEEecCCHHHHHhhc
Confidence            999888633  2235532 4999998 9999999999999999999999999999988 689999999877643333332


Q ss_pred             -CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          243 -KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       243 -~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                       +++|++||++|+. .++.++++++++|+++.+|..  ...+++...++.|++++.|+.
T Consensus       209 ~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~  266 (324)
T 3nx4_A          209 KQLWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVD  266 (324)
T ss_dssp             CCCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECC
T ss_pred             CCCccEEEECCCcH-HHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEe
Confidence             6899999999987 499999999999999999988  356788888999999999974

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-41  Score=301.23  Aligned_cols=243  Identities=21%  Similarity=0.278  Sum_probs=210.7

Q ss_pred             CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           19 SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        19 ~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      ++.+++.+.+.|++.++||+|||+++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++||+|.. +   
T Consensus        13 ~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~-~---   88 (327)
T 1qor_A           13 PEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVY-A---   88 (327)
T ss_dssp             GGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEE-S---
T ss_pred             hhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCCCCEEEE-C---
Confidence            456888999999999999999999999999999999887654557999999999999999999999999999942 1   


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCC
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMN  178 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~  178 (299)
                        +                            ...|+|+||+.+|++.++++|+++++++||++++++.|+|+++.....+
T Consensus        89 --g----------------------------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~  138 (327)
T 1qor_A           89 --Q----------------------------SALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEI  138 (327)
T ss_dssp             --C----------------------------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             --C----------------------------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCC
Confidence              0                            1248999999999999999999999999999999999999999866667


Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEEcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~  252 (299)
                      +++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++.+++..+.+.   +.+..  .++|++||++
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~  217 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSV  217 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECC
Confidence            99999999996 9999999999999999999999998888888 5789999988765433   33332  4799999999


Q ss_pred             CCchhHHHHHHhcccCcEEEEEcCC-C-ceeeChhhhhcC-Ceeeeee
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLVGFP-S-KVKFSPASLNIG-NAPLFRF  297 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~~~~~~~l~~~-~~~~~g~  297 (299)
                      |+ ..++.++++++++|+++.+|.. . ..++++..++.| ++++.++
T Consensus       218 g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~  264 (327)
T 1qor_A          218 GR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRP  264 (327)
T ss_dssp             CG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECC
T ss_pred             ch-HHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhccceEEEcc
Confidence            94 4599999999999999999987 3 356888888888 8888754

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=303.92  Aligned_cols=251  Identities=23%  Similarity=0.354  Sum_probs=204.1

Q ss_pred             ccceEEeeeCC--CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCC
Q 022313            8 KDCLGWAARDP--SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         8 ~~~~~~~~~~~--~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      |+|+++.+...  ++.+++.+.+.|+++++||+|||+++++|++|++.+.|.++ ...+|.++|||++|+|+++|+++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            44566665443  34688999999999999999999999999999999998765 3568999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchh
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCA  164 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  164 (299)
                      |++||+|...                                   ...|+|+||+.+|++.++++|+++++++||.++++
T Consensus        82 ~~~GdrV~~~-----------------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~  126 (349)
T 4a27_A           82 YEIGDRVMAF-----------------------------------VNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMN  126 (349)
T ss_dssp             CCTTCEEEEE-----------------------------------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHH
T ss_pred             CCCCCEEEEe-----------------------------------cCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHH
Confidence            9999999742                                   23589999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCH---HHHH
Q 022313          165 GITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDL---EQMK  239 (299)
Q Consensus       165 ~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~  239 (299)
                      +.|+|+++.+...+++|++|||+|+ |++|++++|+|+..| ++|++++ ++++.+.+ + +|++++++ .+.   +.+.
T Consensus       127 ~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~-~-~ga~~~~~-~~~~~~~~~~  202 (349)
T 4a27_A          127 FVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAI-K-DSVTHLFD-RNADYVQEVK  202 (349)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHH-G-GGSSEEEE-TTSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH-H-cCCcEEEc-CCccHHHHHH
Confidence            9999999977777799999999998 999999999999986 5888877 55666666 4 99999998 443   2333


Q ss_pred             Hh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCC------------------ceeeChhhhhcCCeeeeeec
Q 022313          240 AL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS------------------KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       240 ~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~------------------~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++ .+++|+|||++|+.. ++.++++++++|+++.+|...                  ...+++..++.|++++.||.
T Consensus       203 ~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~  279 (349)
T 4a27_A          203 RISAEGVDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFS  279 (349)
T ss_dssp             HHCTTCEEEEEEECC--------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEEC
T ss_pred             HhcCCCceEEEECCCchh-HHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEe
Confidence            44 368999999999987 689999999999999999751                  12367778888999999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=5.6e-41  Score=299.98  Aligned_cols=255  Identities=23%  Similarity=0.315  Sum_probs=210.9

Q ss_pred             ceEEeeeCC--CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcc
Q 022313           10 CLGWAARDP--SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus        10 ~~~~~~~~~--~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      |+++.+...  +..+++++.+.|++.++||+|||+++++|++|++.+.|.++. ..+|.++|||++|+|+++  ++++|+
T Consensus         5 mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~~~~   82 (330)
T 1tt7_A            5 FQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDPRFA   82 (330)
T ss_dssp             EEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SSTTCC
T ss_pred             ceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCCCCC
Confidence            344444332  347889999999999999999999999999999998886542 357899999999999996  467899


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|++.+..                             .|....|+|+||+.+|++.++++|+++++++||.+++++.
T Consensus        83 vGdrV~~~~~~-----------------------------~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~  133 (330)
T 1tt7_A           83 EGDEVIATSYE-----------------------------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGF  133 (330)
T ss_dssp             TTCEEEEESTT-----------------------------BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEcccc-----------------------------cCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHH
Confidence            99999753210                             0223469999999999999999999999999999999999


Q ss_pred             HHHHHhhhc--cCCCCCC-EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH--HHHH
Q 022313          167 TVYTPMMRH--KMNQPGK-SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE--QMKA  240 (299)
Q Consensus       167 ta~~al~~~--~~~~~g~-~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~  240 (299)
                      |+|.+++..  ..+++++ +|||+|+ |++|++++|+|+..|++|+++++++++++.+ +++|+++++++.+.+  .+.+
T Consensus       134 ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~-~~lGa~~v~~~~~~~~~~~~~  212 (330)
T 1tt7_A          134 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDGTLKA  212 (330)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSSCCCS
T ss_pred             HHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCcEEEECCCchHHHHHH
Confidence            999887532  3458886 9999998 9999999999999999999999999998888 689999998764321  1112


Q ss_pred             h-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          241 L-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       241 ~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      + .+++|++||++|+. .+..++++++++|+++.+|..  ...++++..++.|++++.|+
T Consensus       213 ~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~  271 (330)
T 1tt7_A          213 LSKQQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI  271 (330)
T ss_dssp             SCCCCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred             hhcCCccEEEECCcHH-HHHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEE
Confidence            2 25799999999996 599999999999999999987  35678888888999999996

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.5e-40  Score=295.54  Aligned_cols=245  Identities=22%  Similarity=0.351  Sum_probs=205.4

Q ss_pred             CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCCEEEEecccc
Q 022313           20 GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVN   98 (299)
Q Consensus        20 ~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   98 (299)
                      ..+++++.+.|++.++||+|||+++++|++|++.+.|.++. ..+|.++|||++|+|+++  ++++|++||+|.+.+.. 
T Consensus        16 ~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~-   92 (328)
T 1xa0_A           16 FTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGYE-   92 (328)
T ss_dssp             EEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEESTT-
T ss_pred             ceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCCCCCCEEEEcccc-
Confidence            36889999999999999999999999999999998876432 357899999999999995  46789999999753210 


Q ss_pred             CCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhc--c
Q 022313           99 SCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRH--K  176 (299)
Q Consensus        99 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~--~  176 (299)
                                                  .|....|+|+||+.+|++.++++|+++++++||.+++++.|+|.+++..  .
T Consensus        93 ----------------------------~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~  144 (328)
T 1xa0_A           93 ----------------------------IGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEH  144 (328)
T ss_dssp             ----------------------------BTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------------CCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhc
Confidence                                        0223469999999999999999999999999999999999999887532  3


Q ss_pred             CCCCCC-EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH--HHHHhc-CCccEEEEc
Q 022313          177 MNQPGK-SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE--QMKALG-KSLDFIIDT  251 (299)
Q Consensus       177 ~~~~g~-~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~-~~~d~v~d~  251 (299)
                      .+++++ +|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+.+  .+.++. +++|++||+
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~  223 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP  223 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSEEEECC---------CCSCCEEEEEEC
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCcEEEecCCcHHHHHHHhcCCcccEEEEC
Confidence            458886 9999998 9999999999999999999999999998888 689999999877542  233333 579999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +|+. .+..++++++++|+++.+|..  ...++++..++.|++++.|+
T Consensus       224 ~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~  270 (328)
T 1xa0_A          224 VGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  270 (328)
T ss_dssp             STTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             CcHH-HHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEE
Confidence            9996 499999999999999999987  34567777888999999986

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=2.4e-41  Score=307.68  Aligned_cols=255  Identities=15%  Similarity=0.078  Sum_probs=214.0

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-------------------------
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-------------------------   59 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-------------------------   59 (299)
                      ....+|+++.....+..+++++.+.|++.++||||||++++||++|++++.|.++                         
T Consensus         3 ~~~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~   82 (379)
T 3iup_A            3 HSALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMR   82 (379)
T ss_dssp             CEEEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHH
T ss_pred             CchhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccc
Confidence            3445566666544556799999999999999999999999999999999887521                         


Q ss_pred             ----CCCCCccccccccEEEEEecCCC-CCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCc
Q 022313           60 ----DSKYPLVPGHEIVGIVKEVGHNV-SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGG  134 (299)
Q Consensus        60 ----~~~~p~~lG~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~  134 (299)
                          ..++|.++|||++|+|+++|+++ ++|++||+|+..                                    ..|+
T Consensus        83 ~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~------------------------------------~~G~  126 (379)
T 3iup_A           83 SMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI------------------------------------GGAM  126 (379)
T ss_dssp             HHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEEC------------------------------------CSCC
T ss_pred             ccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEec------------------------------------CCCc
Confidence                23468899999999999999999 889999999742                                    2499


Q ss_pred             ceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEE--cCChHHHHHHHHHHHCCCeEEEEeC
Q 022313          135 YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI--GLGGLGHMAVKFGKAFGLNVTVLST  212 (299)
Q Consensus       135 ~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~--G~g~~G~~a~~~a~~~g~~v~~~~~  212 (299)
                      |+||+.+|++.++++|+++++++||++++...|+|++++...  +++++|||+  |+|++|++++|+|+..|++|+++++
T Consensus       127 ~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~  204 (379)
T 3iup_A          127 YSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR--LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR  204 (379)
T ss_dssp             SBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH--HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES
T ss_pred             ceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            999999999999999999999999999999999998887654  899999999  4599999999999999999999999


Q ss_pred             CchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEEEEcCCCchhHHHHHHhccc-----C-----------cEE
Q 022313          213 STSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFIIDTASGDHPFDAYMSLLKV-----A-----------GVY  271 (299)
Q Consensus       213 ~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~-----~-----------G~~  271 (299)
                      ++++.+.+ +++|+++++++++.+.   +.++.  +++|++||++|+......++++++.     +           |++
T Consensus       205 ~~~~~~~~-~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~i  283 (379)
T 3iup_A          205 KQEQADLL-KAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQV  283 (379)
T ss_dssp             SHHHHHHH-HHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEE
T ss_pred             CHHHHHHH-HhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceE
Confidence            99998888 6899999999887543   33333  4899999999998767888888864     3           777


Q ss_pred             EEEcCCCceeeChhhhhcCCeeeeeec
Q 022313          272 VLVGFPSKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       272 v~~g~~~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+|.....++++..++.++++++||.
T Consensus       284 v~~G~~~~~~~~~~~~~~~~~~i~g~~  310 (379)
T 3iup_A          284 YLYGGLDTSPTEFNRNFGMAWGMGGWL  310 (379)
T ss_dssp             EECCCSEEEEEEECCCSCSCEEEEECC
T ss_pred             EEecCCCCCccccccccccceEEEEEE
Confidence            777776444555667788999999973

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=6.3e-40  Score=298.06  Aligned_cols=236  Identities=24%  Similarity=0.338  Sum_probs=198.3

Q ss_pred             ccceEEeeeCC--CCcccc-eeeecCCC-CCCcEEEEEceeecccchhhhhccCCC---------------CCCCCcccc
Q 022313            8 KDCLGWAARDP--SGVLSP-YSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHG---------------DSKYPLVPG   68 (299)
Q Consensus         8 ~~~~~~~~~~~--~~~~~~-~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~---------------~~~~p~~lG   68 (299)
                      ++++++.+...  +..+++ ++.+.|++ +++||+|||++++||++|++.+.|...               ..++|.++|
T Consensus        20 ~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G   99 (375)
T 2vn8_A           20 FQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLG   99 (375)
T ss_dssp             CCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCC
T ss_pred             ccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcccc
Confidence            34455555433  345778 88999985 999999999999999999999887531               123789999


Q ss_pred             ccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEE
Q 022313           69 HEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK  148 (299)
Q Consensus        69 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~  148 (299)
                      ||++|+|+++|+++++|++||+|+..+.                                ....|+|+||+.+|++.+++
T Consensus       100 ~E~~G~V~~vG~~V~~~~vGDrV~~~~~--------------------------------~~~~G~~aey~~v~~~~~~~  147 (375)
T 2vn8_A          100 RDVSGVVMECGLDVKYFKPGDEVWAAVP--------------------------------PWKQGTLSEFVVVSGNEVSH  147 (375)
T ss_dssp             CEEEEEEEEECTTCCSCCTTCEEEEECC--------------------------------TTSCCSSBSEEEEEGGGEEE
T ss_pred             eeeeEEEEEeCCCCCCCCCCCEEEEecC--------------------------------CCCCccceeEEEEcHHHeee
Confidence            9999999999999999999999975321                                12359999999999999999


Q ss_pred             cCCCCCcccccccchhhHHHHHHhhhccC----CCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh
Q 022313          149 IANDYPLALAAPLLCAGITVYTPMMRHKM----NQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL  223 (299)
Q Consensus       149 ~p~~~~~~~aa~~~~~~~ta~~al~~~~~----~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~  223 (299)
                      +|+++++++||.+++++.|||+++.....    +++|++|||+|+ |++|++++|+|+..|++|++++ ++++.+.+ ++
T Consensus       148 iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~~  225 (375)
T 2vn8_A          148 KPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-RK  225 (375)
T ss_dssp             CCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HH
T ss_pred             CCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-HH
Confidence            99999999999999999999999976555    699999999995 9999999999999999999988 56777777 79


Q ss_pred             cCCCEEEeCCCHHHHHHh--cCCccEEEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          224 LGADKFVVSSDLEQMKAL--GKSLDFIIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       224 ~g~~~v~~~~~~~~~~~~--~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++++++.+.+..+++  ..++|++||++|+. ..+..++++++++|+++.+|..
T Consensus       226 lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          226 LGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             TTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCS
T ss_pred             cCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCC
Confidence            999999988765443333  26899999999998 4468889999999999999977

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=2.4e-39  Score=290.10  Aligned_cols=249  Identities=18%  Similarity=0.180  Sum_probs=212.6

Q ss_pred             ccceEEeeeC------CCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCcccccc----ccEEEEE
Q 022313            8 KDCLGWAARD------PSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHE----IVGIVKE   77 (299)
Q Consensus         8 ~~~~~~~~~~------~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e----~~G~V~~   77 (299)
                      ++++++.+..      .++.+++.+.+.|++.++||||||++++||++|.+.+.+... ...|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEEe
Confidence            4456666654      467899999999999999999999999999999988766432 3457788888    7999999


Q ss_pred             ecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccc
Q 022313           78 VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLAL  157 (299)
Q Consensus        78 vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  157 (299)
                      .  ++++|++||+|+.                                      .|+|+||+.+|++.++++|+++++.+
T Consensus        85 ~--~v~~~~vGdrV~~--------------------------------------~G~~aey~~v~~~~~~~~P~~~~~~~  124 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNG--------------------------------------ALGVQDYFIGEPKGFYKVDPSRAPLP  124 (336)
T ss_dssp             E--CSTTCCTTCEEEE--------------------------------------ECCSBSEEEECCTTCEEECTTTSCGG
T ss_pred             c--CCCCCCCCCEEec--------------------------------------cCCceEEEEechHHeEEcCCCCCchH
Confidence            4  5889999999963                                      38899999999999999999998777


Q ss_pred             c--cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC
Q 022313          158 A--APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD  234 (299)
Q Consensus       158 a--a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~  234 (299)
                      +  |++++++.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|+++++++++.+.+.+++|++++++..+
T Consensus       125 ~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~  204 (336)
T 4b7c_A          125 RYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKN  204 (336)
T ss_dssp             GGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTT
T ss_pred             HHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCC
Confidence            6  7899999999999976767799999999998 999999999999999999999999999888867899999998876


Q ss_pred             HHH---HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCC--------ceeeChhhhhcCCeeeeeec
Q 022313          235 LEQ---MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPS--------KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       235 ~~~---~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--------~~~~~~~~l~~~~~~~~g~~  298 (299)
                      .+.   +.+. .+++|++||++|+.. +..++++++++|+++.+|...        ...+++..++.|+++++|+.
T Consensus       205 ~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  279 (336)
T 4b7c_A          205 EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMV  279 (336)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECC
T ss_pred             HHHHHHHHHhcCCCceEEEECCCcch-HHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEE
Confidence            433   3333 368999999999854 999999999999999999762        14667788899999999974

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=9.7e-40  Score=295.43  Aligned_cols=249  Identities=22%  Similarity=0.286  Sum_probs=209.1

Q ss_pred             cceEEeeeCCC----Ccccc-eeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCC
Q 022313            9 DCLGWAARDPS----GVLSP-YSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNV   82 (299)
Q Consensus         9 ~~~~~~~~~~~----~~~~~-~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v   82 (299)
                      +|+++.+....    +.+++ ++.+.|++.++||+|||++++||++|++.+.|.+. ...+|.++|||++|+|+++|+++
T Consensus        23 ~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG~~V  102 (362)
T 2c0c_A           23 MMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSA  102 (362)
T ss_dssp             EEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEECTTG
T ss_pred             hceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEECCCc
Confidence            34556654443    24778 99999999999999999999999999999988764 24679999999999999999999


Q ss_pred             C-CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCccccccc
Q 022313           83 S-RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPL  161 (299)
Q Consensus        83 ~-~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~  161 (299)
                      + +|++||+|+..                                    ..|+|+||+.+|++.++++|+. + .++|++
T Consensus       103 ~~~~~vGdrV~~~------------------------------------~~G~~aey~~v~~~~~~~~P~~-~-~~aaal  144 (362)
T 2c0c_A          103 SARYTVGQAVAYM------------------------------------APGSFAEYTVVPASIATPVPSV-K-PEYLTL  144 (362)
T ss_dssp             GGTCCTTCEEEEE------------------------------------CSCCSBSEEEEEGGGCEECSSS-C-HHHHTT
T ss_pred             cCCCCCCCEEEEc------------------------------------cCCcceeEEEEcHHHeEECCCC-c-hHhhcc
Confidence            9 99999999742                                    2499999999999999999986 3 467788


Q ss_pred             chhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH---H
Q 022313          162 LCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE---Q  237 (299)
Q Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~  237 (299)
                      ++++.|+|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|++.++++.+.+   .
T Consensus       145 ~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~  223 (362)
T 2c0c_A          145 LVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFL-KSLGCDRPINYKTEPVGTV  223 (362)
T ss_dssp             TTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTTSCHHHH
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHcCCcEEEecCChhHHHH
Confidence            8999999999987767799999999995 9999999999999999999999998888888 689999999876533   2


Q ss_pred             HHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-c--e--------eeChhhhhcCCeeeeeec
Q 022313          238 MKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-K--V--------KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       238 ~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~--~--------~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+.. +++|++||++|+. .++.++++++++|+++.+|.. . .  .        .+ ...++.|+++++|+.
T Consensus       224 ~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~  295 (362)
T 2c0c_A          224 LKQEYPEGVDVVYESVGGA-MFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFF  295 (362)
T ss_dssp             HHHHCTTCEEEEEECSCTH-HHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECC
T ss_pred             HHHhcCCCCCEEEECCCHH-HHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEE
Confidence            33333 5899999999985 499999999999999999976 2 1  1        12 256788999999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=3.4e-38  Score=278.55  Aligned_cols=237  Identities=23%  Similarity=0.373  Sum_probs=200.7

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      +++.+....+...+++.+.|++.++||+|||+++++|++|++.+.|.++. ..+|.++|||++|+|+           ||
T Consensus         2 ka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------Gd   70 (302)
T 1iz0_A            2 KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------GR   70 (302)
T ss_dssp             EEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------TE
T ss_pred             eEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------Cc
Confidence            44555433333345688999999999999999999999999999886653 3578999999999998           99


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVY  169 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~  169 (299)
                      +|...+                                   ..|+|+||+.+|++.++++|+++++++||++++++.|+|
T Consensus        71 rV~~~~-----------------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~  115 (302)
T 1iz0_A           71 RYAALV-----------------------------------PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAY  115 (302)
T ss_dssp             EEEEEC-----------------------------------SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHH
T ss_pred             EEEEec-----------------------------------CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHH
Confidence            997421                                   249999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-HHHHHHhcCCccE
Q 022313          170 TPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-LEQMKALGKSLDF  247 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~  247 (299)
                      +++.... +++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+ .+..+++ +++|+
T Consensus       116 ~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~~~~~~~~~~~-~~~d~  192 (302)
T 1iz0_A          116 LALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAATYAEVPERAKAW-GGLDL  192 (302)
T ss_dssp             HHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEEGGGHHHHHHHT-TSEEE
T ss_pred             HHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEECCcchhHHHHh-cCceE
Confidence            9997656 799999999998 9999999999999999999999999998888 6899999998876 5555555 78999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC-C-ceeeChhhhhcCCeeeeeec
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S-KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~-~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +|| +|+. .++.++++++++|+++.+|.. . ..++++..++.|++++.|+.
T Consensus       193 vid-~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~  243 (302)
T 1iz0_A          193 VLE-VRGK-EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFW  243 (302)
T ss_dssp             EEE-CSCT-THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECC
T ss_pred             EEE-CCHH-HHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEe
Confidence            999 9985 599999999999999999987 3 34677788899999999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=6.5e-38  Score=283.02  Aligned_cols=251  Identities=16%  Similarity=0.103  Sum_probs=207.0

Q ss_pred             cccceEEeee-CC-----C--CcccceeeecCCC-CCCcEEEEEceeecccchhhhhcc----CCC-CCCCCcccccccc
Q 022313            7 SKDCLGWAAR-DP-----S--GVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRN----KHG-DSKYPLVPGHEIV   72 (299)
Q Consensus         7 ~~~~~~~~~~-~~-----~--~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g----~~~-~~~~p~~lG~e~~   72 (299)
                      ||+|+++.+. ..     |  +.+++++.+.|++ .++||+|||+++++|++|++.+.+    .+. ...+|.++|||++
T Consensus         6 ~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~   85 (357)
T 2zb4_A            6 AMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGI   85 (357)
T ss_dssp             CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEE
T ss_pred             cccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccEE
Confidence            4555666662 22     2  5688999999999 999999999999999999887765    232 2356889999999


Q ss_pred             EEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCC
Q 022313           73 GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND  152 (299)
Q Consensus        73 G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~  152 (299)
                      |+|++  +++++|++||+|+..                                     .|+|+||+.+|++.++++|++
T Consensus        86 G~V~~--~~v~~~~vGdrV~~~-------------------------------------~G~~aey~~v~~~~~~~iP~~  126 (357)
T 2zb4_A           86 GIIEE--SKHTNLTKGDFVTSF-------------------------------------YWPWQTKVILDGNSLEKVDPQ  126 (357)
T ss_dssp             EEEEE--ECSTTCCTTCEEEEE-------------------------------------EEESBSEEEEEGGGCEECCGG
T ss_pred             EEEEe--cCCCCCCCCCEEEec-------------------------------------CCCcEEEEEEchHHceecCcc
Confidence            99999  888999999999741                                     378999999999999999999


Q ss_pred             C-----CcccccccchhhHHHHHHhhhccCCCCC--CEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHh
Q 022313          153 Y-----PLALAAPLLCAGITVYTPMMRHKMNQPG--KSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSL  223 (299)
Q Consensus       153 ~-----~~~~aa~~~~~~~ta~~al~~~~~~~~g--~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~  223 (299)
                      +     +++ +|++++++.|||+++.....++++  ++|||+|+ |++|++++|+++..|+ +|+++++++++.+.+.++
T Consensus       127 ~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~  205 (357)
T 2zb4_A          127 LVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE  205 (357)
T ss_dssp             GGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             cccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence            9     555 778999999999999666666999  99999998 9999999999999999 999999999888888555


Q ss_pred             cCCCEEEeCCCHH---HHHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeCh---------hhhh
Q 022313          224 LGADKFVVSSDLE---QMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSP---------ASLN  288 (299)
Q Consensus       224 ~g~~~v~~~~~~~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~---------~~l~  288 (299)
                      +|++.+++..+.+   .+.+.. +++|++||++|+. .++.++++++++|+++.+|..  ....++.         ..++
T Consensus       206 ~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~  284 (357)
T 2zb4_A          206 LGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGN-ISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQK  284 (357)
T ss_dssp             SCCSEEEETTTSCHHHHHHHHCTTCEEEEEESCCHH-HHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHH
T ss_pred             cCCceEEecCchHHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhh
Confidence            9999998876543   333333 4799999999974 499999999999999999987  2223332         4678


Q ss_pred             cCCeeeeeec
Q 022313          289 IGNAPLFRFK  298 (299)
Q Consensus       289 ~~~~~~~g~~  298 (299)
                      .|++++.|+.
T Consensus       285 ~~~~~i~g~~  294 (357)
T 2zb4_A          285 ERNITRERFL  294 (357)
T ss_dssp             HHTCEEEECC
T ss_pred             cceeEEEEee
Confidence            8999999873

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=3.8e-35  Score=262.45  Aligned_cols=249  Identities=18%  Similarity=0.164  Sum_probs=204.1

Q ss_pred             ccccccceEEeeeCC------CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEE
Q 022313            4 ETASKDCLGWAARDP------SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKE   77 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~   77 (299)
                      +..+|+|+++.+...      ++.+++++.+.|++.++||+|||+++++|+.|..+ .   .....|.++|||++|+|++
T Consensus         2 ~~~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~---~~~~~p~~~g~e~~G~Vv~   77 (333)
T 1v3u_A            2 PEFMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S---KRLKEGAVMMGQQVARVVE   77 (333)
T ss_dssp             --CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T---TTCCTTSBCCCCEEEEEEE
T ss_pred             CcccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c---CcCCCCcccccceEEEEEe
Confidence            344566777777553      25688899999999999999999999999988632 1   1235678899999999999


Q ss_pred             ecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCC----C
Q 022313           78 VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND----Y  153 (299)
Q Consensus        78 vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~----~  153 (299)
                      .  ++++|++||+|+.                                      .|+|+||+.+|++.++++|++    +
T Consensus        78 ~--~v~~~~vGdrV~~--------------------------------------~g~~aey~~v~~~~~~~iP~~~~~~~  117 (333)
T 1v3u_A           78 S--KNSAFPAGSIVLA--------------------------------------QSGWTTHFISDGKGLEKLLTEWPDKL  117 (333)
T ss_dssp             E--SCTTSCTTCEEEE--------------------------------------CCCSBSEEEESSTTEEECC--CCTTS
T ss_pred             c--CCCCCCCCCEEEe--------------------------------------cCceEEEEEechHHeEEcCcccccCC
Confidence            5  5788999999963                                      278999999999999999997    8


Q ss_pred             Cccc-ccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          154 PLAL-AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       154 ~~~~-aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      ++++ +|++++++.|||+++.....++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|++.+++
T Consensus       118 ~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~d  196 (333)
T 1v3u_A          118 PLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFN  196 (333)
T ss_dssp             CGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEE
T ss_pred             CHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCcEEEe
Confidence            8887 58999999999999976666799999999998 9999999999999999999999998888888 7899998888


Q ss_pred             CCC-HH---HHHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C------ce-eeChhhhhcCCeeeeeec
Q 022313          232 SSD-LE---QMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S------KV-KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       232 ~~~-~~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~------~~-~~~~~~l~~~~~~~~g~~  298 (299)
                      ..+ .+   .+.+.. +++|++||++|+.. ++.++++++++|+++.+|.. .      .. .+++..++.|++++.|+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  275 (333)
T 1v3u_A          197 YKTVNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFI  275 (333)
T ss_dssp             TTSCSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECC
T ss_pred             cCCHHHHHHHHHHHhCCCCeEEEECCChHH-HHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEe
Confidence            765 32   233333 57999999999865 89999999999999999987 2      11 236677889999999974

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=2.9e-35  Score=264.39  Aligned_cols=241  Identities=16%  Similarity=0.165  Sum_probs=198.6

Q ss_pred             CCCC--cccce--eeecCC-CCCCcEEEEEceeecccchhhhhccCCCC----CCCCccccccccEEEEE--ecCCCCCc
Q 022313           17 DPSG--VLSPY--SFNRRA-VGSDDVSITITHCGVCYADVIWTRNKHGD----SKYPLVPGHEIVGIVKE--VGHNVSRF   85 (299)
Q Consensus        17 ~~~~--~~~~~--~~~~p~-~~~~evlv~v~~~~i~~~D~~~~~g~~~~----~~~p~~lG~e~~G~V~~--vG~~v~~~   85 (299)
                      ..++  .++++  +.+.|. ++++||||||+++++|+.|. .+.|.+..    ...|.++|||.+|++++  +|+++++|
T Consensus        16 ~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~~~v~~~   94 (345)
T 2j3h_A           16 GFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDY   94 (345)
T ss_dssp             SSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEEECSTTC
T ss_pred             CCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEecCCCCC
Confidence            3455  68887  888886 89999999999999888775 44454321    23688999999999999  99999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce--EEEcCC---CCCcccccc
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY--CYKIAN---DYPLALAAP  160 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~--~~~~p~---~~~~~~aa~  160 (299)
                      ++||+|..                                      .|+|+||+.++++.  ++++|+   +++++ +|+
T Consensus        95 ~vGdrV~~--------------------------------------~g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~  135 (345)
T 2j3h_A           95 KKGDLLWG--------------------------------------IVAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGL  135 (345)
T ss_dssp             CTTCEEEE--------------------------------------EEESBSEEEECCCTTTCEEECCCSSCTTGG-GTT
T ss_pred             CCCCEEEe--------------------------------------ecCceeEEEecccccceeecCCCCCCHHHH-HHh
Confidence            99999963                                      27899999999876  999996   35555 678


Q ss_pred             cchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH----
Q 022313          161 LLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDL----  235 (299)
Q Consensus       161 ~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~----  235 (299)
                      +++++.|||+++.....++++++|||+|+ |++|++++|+++..|++|+++++++++.+.+++++|++.+++..+.    
T Consensus       136 l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~  215 (345)
T 2j3h_A          136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLT  215 (345)
T ss_dssp             TSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSH
T ss_pred             ccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHH
Confidence            99999999999976666799999999997 9999999999999999999999999988888547999998886542    


Q ss_pred             HHHHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-C------ceeeChhhhhcCCeeeeeec
Q 022313          236 EQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-S------KVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       236 ~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~------~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+.+.. +++|++||++|+. .++.++++++++|+++.+|.. .      ...+++..++.|++++.|+.
T Consensus       216 ~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  285 (345)
T 2j3h_A          216 AALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFV  285 (345)
T ss_dssp             HHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECC
T ss_pred             HHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceee
Confidence            3344443 5799999999985 599999999999999999976 2      34567778889999999864

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=3e-36  Score=296.28  Aligned_cols=237  Identities=20%  Similarity=0.284  Sum_probs=198.0

Q ss_pred             CCCCcccceeeec--CCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEe
Q 022313           17 DPSGVLSPYSFNR--RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVG   94 (299)
Q Consensus        17 ~~~~~~~~~~~~~--p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~   94 (299)
                      +.++.+++.+.+.  |++.++||+|||++++||++|++++.|.++   .|.++|||++|+|+++|++|++|++||+|+. 
T Consensus       219 G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~-  294 (795)
T 3slk_A          219 GSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLAPGDRVMG-  294 (795)
T ss_dssp             TSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSCTTCEEEE-
T ss_pred             CCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCCCCCEEEE-
Confidence            3445667766664  578999999999999999999999988664   3567999999999999999999999999964 


Q ss_pred             ccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhh
Q 022313           95 TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMR  174 (299)
Q Consensus        95 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~  174 (299)
                                                         ...|+|+||+.++++.++++|+++++++||+++++++|+|+++..
T Consensus       295 -----------------------------------~~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~  339 (795)
T 3slk_A          295 -----------------------------------MIPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVD  339 (795)
T ss_dssp             -----------------------------------CCSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred             -----------------------------------EecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHH
Confidence                                               234899999999999999999999999999999999999999988


Q ss_pred             ccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH---HHHhc--CCccEE
Q 022313          175 HKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ---MKALG--KSLDFI  248 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~v  248 (299)
                      ...+++|++|||+|+ |++|++++|+|+..|++|+++++++ +.+.+  ++|+++++++++.+.   +.+.+  +++|+|
T Consensus       340 ~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l--~lga~~v~~~~~~~~~~~i~~~t~g~GvDvV  416 (795)
T 3slk_A          340 LAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAV--ELSREHLASSRTCDFEQQFLGATGGRGVDVV  416 (795)
T ss_dssp             CTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGS--CSCGGGEECSSSSTHHHHHHHHSCSSCCSEE
T ss_pred             HhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhh--hcChhheeecCChhHHHHHHHHcCCCCeEEE
Confidence            778899999999997 9999999999999999999998765 44444  389999998877543   33343  589999


Q ss_pred             EEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          249 IDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       249 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      ||++++.. ++.++++++++|+++.+|.. ...+..+. +..+++++.+|
T Consensus       417 ld~~gg~~-~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~-~~~~~~~~~~~  464 (795)
T 3slk_A          417 LNSLAGEF-ADASLRMLPRGGRFLELGKTDVRDPVEVA-DAHPGVSYQAF  464 (795)
T ss_dssp             EECCCTTT-THHHHTSCTTCEEEEECCSTTCCCHHHHH-HHSSSEEEEEC
T ss_pred             EECCCcHH-HHHHHHHhcCCCEEEEeccccccCccccc-ccCCCCEEEEe
Confidence            99999876 89999999999999999987 32222222 22466666655

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.94  E-value=3.5e-27  Score=253.77  Aligned_cols=218  Identities=18%  Similarity=0.227  Sum_probs=182.6

Q ss_pred             CCcEEEEEceeecccchhhhhccCCCCC-------CCCccccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccc
Q 022313           34 SDDVSITITHCGVCYADVIWTRNKHGDS-------KYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYC  106 (299)
Q Consensus        34 ~~evlv~v~~~~i~~~D~~~~~g~~~~~-------~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~  106 (299)
                      ++||+|||.++++|+.|++++.|.++..       ..|.++|+|++|+|.          +||+|+..            
T Consensus      1559 ~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV~g~------------ 1616 (2512)
T 2vz8_A         1559 CQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRVMGM------------ 1616 (2512)
T ss_dssp             HHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCEEEE------------
T ss_pred             CCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEEEEe------------
Confidence            7899999999999999999998865421       235689999999873          79999632            


Q ss_pred             cCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEE
Q 022313          107 NDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV  186 (299)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI  186 (299)
                                             ...|+|+||+.+|++.++++|+++++++||++++++.|+|+++.....+++|++|||
T Consensus      1617 -----------------------~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI 1673 (2512)
T 2vz8_A         1617 -----------------------VPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLI 1673 (2512)
T ss_dssp             -----------------------CSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             -----------------------ecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence                                   234899999999999999999999999999999999999999987777899999999


Q ss_pred             EcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEEEeCCCHHHHH---Hhc--CCccEEEEcCCCchh
Q 022313          187 IGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKFVVSSDLEQMK---ALG--KSLDFIIDTASGDHP  257 (299)
Q Consensus       187 ~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~---~~~--~~~d~v~d~~g~~~~  257 (299)
                      +|+ |++|++++|+|+..|++|++++.++++.+.+++.   +|+++++++.+.+..+   +.+  +++|+|||++++. .
T Consensus      1674 ~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~-~ 1752 (2512)
T 2vz8_A         1674 HSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEE-K 1752 (2512)
T ss_dssp             TTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHH-H
T ss_pred             EeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCch-H
Confidence            986 9999999999999999999999999988888553   6789999888754433   333  5799999999865 4


Q ss_pred             HHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeee
Q 022313          258 FDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +..++++++++|+++.+|..  .........++.|++++.|+
T Consensus      1753 l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~ 1794 (2512)
T 2vz8_A         1753 LQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGI 1794 (2512)
T ss_dssp             HHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEEC
T ss_pred             HHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEe
Confidence            99999999999999999976  22222234566788888875

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.81  E-value=1.8e-19  Score=148.74  Aligned_cols=151  Identities=19%  Similarity=0.256  Sum_probs=114.7

Q ss_pred             ceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH
Q 022313          144 RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS  222 (299)
Q Consensus       144 ~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~  222 (299)
                      +.++++|+++++++||.+++++.|+|+++.....++++++|||+|+ |++|++++++++..|++|+++++++++.+.+ +
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-S   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-H
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-H
Confidence            4688999999999999999999999999977666799999999996 9999999999999999999999998888777 6


Q ss_pred             hcCCCEEEeCCCHHH---HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeee
Q 022313          223 LLGADKFVVSSDLEQ---MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPL  294 (299)
Q Consensus       223 ~~g~~~v~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~  294 (299)
                      ++|.+.+++..+.+.   +.+..  +++|+++|++|... ++.++++++++|+++.+|..   ...++++. ++.|++++
T Consensus        81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~  158 (198)
T 1pqw_A           81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKSASF  158 (198)
T ss_dssp             TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTTCEE
T ss_pred             HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCCcEE
Confidence            789888887765433   33332  47999999998654 89999999999999999986   23345443 45788888


Q ss_pred             eee
Q 022313          295 FRF  297 (299)
Q Consensus       295 ~g~  297 (299)
                      .+|
T Consensus       159 ~~~  161 (198)
T 1pqw_A          159 SVV  161 (198)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            865

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.15  E-value=2.1e-10  Score=97.15  Aligned_cols=176  Identities=10%  Similarity=-0.078  Sum_probs=109.7

Q ss_pred             cccCCEEEEecc------ccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc
Q 022313           85 FKVGDHVGVGTY------VNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA  158 (299)
Q Consensus        85 ~~~Gd~V~~~~~------~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a  158 (299)
                      +++||+|++.+.      ...||.|.+|+.|...+|+.....+           |...+++.++......+++......+
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~~-----------G~~~~~~~~~~p~~~~~~~~~~~~~~   72 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPE-----------GVKINGFEVYRPTLEEIILLGFERKT   72 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCCT-----------TEEETTEEEECCCHHHHHHHTSCCSS
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCCC-----------CCEEEEEEEeCCCHHHHHHhcCcCCC
Confidence            899999998762      3478999999999888887543221           22212222221111111111111111


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC-C--EEEeC
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA-D--KFVVS  232 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~-~--~v~~~  232 (299)
                       .+...... ...+.... ++++++||.+|+| .|..+..+++. +.+++.++.+++..+.+.+.   .+. +  .++..
T Consensus        73 -~~~~~~~~-~~~~~~~~-~~~~~~vldiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~  147 (248)
T 2yvl_A           73 -QIIYPKDS-FYIALKLN-LNKEKRVLEFGTG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV  147 (248)
T ss_dssp             -CCCCHHHH-HHHHHHTT-CCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS
T ss_pred             -CcccchhH-HHHHHhcC-CCCCCEEEEeCCC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence             11112222 23444444 4899999999998 59899999998 78999999999888777543   232 1  22222


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          233 SDLEQMKALGKSLDFIIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +-.+.. ...++||+|+...+.. ..++.+.+.|+++|+++.....
T Consensus       148 d~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          148 DFKDAE-VPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CTTTSC-CCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             Chhhcc-cCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            111110 0125799999988876 5789999999999999987654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.06  E-value=2.4e-12  Score=117.45  Aligned_cols=187  Identities=14%  Similarity=0.113  Sum_probs=129.5

Q ss_pred             cccccccEEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce
Q 022313           66 VPGHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY  145 (299)
Q Consensus        66 ~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~  145 (299)
                      ..|+|.++.|..+|.+++.+.+|+.+++....          .+         +.       .....|++.+|+..+...
T Consensus        76 ~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk----------~~---------~~-------~~~~~G~~~~~~~~~~~~  129 (404)
T 1gpj_A           76 KRGSEAVRHLFRVASGLESMMVGEQEILRQVK----------KA---------YD-------RAARLGTLDEALKIVFRR  129 (404)
T ss_dssp             EEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH----------HH---------HH-------HHHHHTCCCHHHHHHHHH
T ss_pred             ecCchHhhhheeeccCCCCCcCCcchhHHHHH----------HH---------HH-------HHHHcCCchHHHHHHHHH
Confidence            47999999999999999999999987321100          00         00       001236678888777778


Q ss_pred             EEEcCCCCCcccccccchhhHHHHHHhhhccC---CCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHH
Q 022313          146 CYKIANDYPLALAAPLLCAGITVYTPMMRHKM---NQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEAL  221 (299)
Q Consensus       146 ~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~---~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~  221 (299)
                      ++.+|+.++.+.++. ..+..++|.++.....   -.++++|+|+|+|.+|.++++.++..|+ +|++++++.++.+.+.
T Consensus       130 a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la  208 (404)
T 1gpj_A          130 AINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA  208 (404)
T ss_dssp             HHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH
T ss_pred             HhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            888888877776554 3455667776654321   1589999999999999999999999999 9999999988876666


Q ss_pred             HhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH--HHHHHh--c--ccCcEEEEEcCCCceeeC
Q 022313          222 SLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF--DAYMSL--L--KVAGVYVLVGFPSKVKFS  283 (299)
Q Consensus       222 ~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~--~~~~~~--l--~~~G~~v~~g~~~~~~~~  283 (299)
                      +++|++ +++..   .+.+...++|+|+++++.....  ...+..  +  ++++.++.++...+.+++
T Consensus       209 ~~~g~~-~~~~~---~l~~~l~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~~i~  272 (404)
T 1gpj_A          209 RDLGGE-AVRFD---ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVE  272 (404)
T ss_dssp             HHHTCE-ECCGG---GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             HHcCCc-eecHH---hHHHHhcCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCCCCC
Confidence            788875 33332   2333336899999999865422  134444  4  557777777665333333

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.95  E-value=4.3e-09  Score=94.74  Aligned_cols=118  Identities=17%  Similarity=0.224  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      ++++|+|+|+|.+|+.+++.++..|++|+++++++++.+.+.+.+|.+...+..+.+.+.+...++|+|+++++...   
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~  244 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA  244 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence            46899999999999999999999999999999999988888555887643444445555555568999999998653   


Q ss_pred             ---hHHHHHHhcccCcEEEEEcCC-C-------ceeeChhhhhcCCeeeeee
Q 022313          257 ---PFDAYMSLLKVAGVYVLVGFP-S-------KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       257 ---~~~~~~~~l~~~G~~v~~g~~-~-------~~~~~~~~l~~~~~~~~g~  297 (299)
                         ..+..++.++++|+++.++.. .       +.+++...+..+++++.|.
T Consensus       245 ~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v  296 (369)
T 2eez_A          245 PKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGV  296 (369)
T ss_dssp             -CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECC
T ss_pred             chhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEee
Confidence               257788999999999999876 2       3345555666788887765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.95  E-value=3.2e-09  Score=95.24  Aligned_cols=116  Identities=12%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE--EEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK--FVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      ++++|+|+|+|++|+++++.++.+|++|+++++++++.+.+. +++.+.  +++.. .+.+.+...++|+|+++++.+. 
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE-TLFGSRVELLYSN-SAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHGGGSEEEECC-HHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HhhCceeEeeeCC-HHHHHHHHcCCCEEEECCCcCCC
Confidence            348999999999999999999999999999999999988884 444332  33333 2333333358999999998644 


Q ss_pred             -----hHHHHHHhcccCcEEEEEcCC-C-------ceeeChhhhhcCCeeeeee
Q 022313          257 -----PFDAYMSLLKVAGVYVLVGFP-S-------KVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       257 -----~~~~~~~~l~~~G~~v~~g~~-~-------~~~~~~~~l~~~~~~~~g~  297 (299)
                           ..+..++.++++|++++++.. .       ..+++...+..+++++.|.
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~  297 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGV  297 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECC
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEe
Confidence                 256788999999999999876 2       4456666777889988774

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.88  E-value=7.5e-09  Score=93.37  Aligned_cols=118  Identities=16%  Similarity=0.206  Sum_probs=89.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP-  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  257 (299)
                      -++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.+|.....+..+...+.+...++|+|+++++.+.. 
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~  245 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAK  245 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            3689999999999999999999999999999999999988885557865333333334444544679999999976543 


Q ss_pred             -----HHHHHHhcccCcEEEEEcCC-C-------ceeeChhhhhcCCeeeee
Q 022313          258 -----FDAYMSLLKVAGVYVLVGFP-S-------KVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       258 -----~~~~~~~l~~~G~~v~~g~~-~-------~~~~~~~~l~~~~~~~~g  296 (299)
                           .+..++.++++|+++.++.. +       +.+++...+..+++++.+
T Consensus       246 t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~  297 (377)
T 2vhw_A          246 APKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYC  297 (377)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEEC
T ss_pred             CcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEe
Confidence                 57788999999999999854 1       333444455567777543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.86  E-value=9.6e-09  Score=92.94  Aligned_cols=118  Identities=18%  Similarity=0.156  Sum_probs=88.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCC----------------------HH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSD----------------------LE  236 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~----------------------~~  236 (299)
                      ++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+ +++|++.+ ++..+                      .+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~-~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            78999999999999999999999999999999999988888 56997654 22211                      12


Q ss_pred             HHHHhcCCccEEEEcC---CCc--hh-HHHHHHhcccCcEEEEEcCC--Cce--eeChhhhhcCCeeeeeec
Q 022313          237 QMKALGKSLDFIIDTA---SGD--HP-FDAYMSLLKVAGVYVLVGFP--SKV--KFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~---g~~--~~-~~~~~~~l~~~G~~v~~g~~--~~~--~~~~~~l~~~~~~~~g~~  298 (299)
                      .+.+...++|+|++++   |.+  .. ....++.|++++.+++++..  ...  ..+...+..+++++.|..
T Consensus       250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~  321 (384)
T 1l7d_A          250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHT  321 (384)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCS
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeC
Confidence            2445557899999999   532  22 37789999999999999865  222  234456678899988753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.74  E-value=4.2e-08  Score=90.85  Aligned_cols=120  Identities=17%  Similarity=0.181  Sum_probs=92.6

Q ss_pred             hhHHHHHHhhhcc-CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhc
Q 022313          164 AGITVYTPMMRHK-MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALG  242 (299)
Q Consensus       164 ~~~ta~~al~~~~-~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  242 (299)
                      ...++|+++.+.. ...+|++|+|+|.|.+|..+++.++..|++|+++++++.+.+.+ +++|++ +++   .   .++.
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-~~~Ga~-~~~---l---~e~l  327 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-MMEGFD-VVT---V---EEAI  327 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-ECC---H---HHHG
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCE-Eec---H---HHHH
Confidence            3455666665443 24899999999999999999999999999999999998887777 578875 322   1   2334


Q ss_pred             CCccEEEEcCCCchhHH-HHHHhcccCcEEEEEcCCCceeeChhhhhcCCe
Q 022313          243 KSLDFIIDTASGDHPFD-AYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNA  292 (299)
Q Consensus       243 ~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~  292 (299)
                      .++|+|+++++....+. ..++.++++|+++.+|.... .++...|..+.+
T Consensus       328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~-eId~~aL~~~aL  377 (494)
T 3ce6_A          328 GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDN-EIDMAGLERSGA  377 (494)
T ss_dssp             GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGG-GBCHHHHHHTTC
T ss_pred             hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCC-ccCHHHHHHhhh
Confidence            68999999999877555 78899999999999988732 466666665443

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.65  E-value=8.9e-08  Score=86.93  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCC-------------CHH-------HH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSS-------------DLE-------QM  238 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~-------------~~~-------~~  238 (299)
                      ++++|+|+|+|.+|+.++++++.+|++|+++++++++.+.+ +++|++.+. +..             ..+       .+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            58899999999999999999999999999999999998888 688876442 111             011       23


Q ss_pred             HHhcCCccEEEEcCCCc-----h-hHHHHHHhcccCcEEEEEcCC--CceeeCh-hh--hhcCCeeeeeec
Q 022313          239 KALGKSLDFIIDTASGD-----H-PFDAYMSLLKVAGVYVLVGFP--SKVKFSP-AS--LNIGNAPLFRFK  298 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~-----~-~~~~~~~~l~~~G~~v~~g~~--~~~~~~~-~~--l~~~~~~~~g~~  298 (299)
                      .+...++|+|+++++-+     . .....++.|++++.+++++..  ..++.+. .+  +..+++++.|..
T Consensus       250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence            44446799999995221     2 236789999999999999965  3333332 12  567889888753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.46  E-value=1.5e-07  Score=72.86  Aligned_cols=106  Identities=18%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCc
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  245 (299)
                      ..++.+++.... ..+++|+|+|+|.+|...++.+...|++|+++++++++.+.+.++++.+. ....+..   +...++
T Consensus         7 sv~~~a~~~~~~-~~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~-~~~~~~~---~~~~~~   81 (144)
T 3oj0_A            7 SIPSIVYDIVRK-NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEY-VLINDID---SLIKNN   81 (144)
T ss_dssp             SHHHHHHHHHHH-HCCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEE-EECSCHH---HHHHTC
T ss_pred             cHHHHHHHHHHh-ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCce-EeecCHH---HHhcCC
Confidence            344566665555 55899999999999999999998889999999999999888777888543 2333322   223579


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+|+.+++...... ....+++++.++.++.+
T Consensus        82 Divi~at~~~~~~~-~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           82 DVIITATSSKTPIV-EERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             SEEEECSCCSSCSB-CGGGCCTTCEEEECCSS
T ss_pred             CEEEEeCCCCCcEe-eHHHcCCCCEEEEccCC
Confidence            99999999764222 23788999999999887

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.43  E-value=5.9e-07  Score=80.26  Aligned_cols=118  Identities=16%  Similarity=0.084  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC--------C-----------CHHHHHH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS--------S-----------DLEQMKA  240 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~--------~-----------~~~~~~~  240 (299)
                      ++.+|+|+|+|.+|+.+++.++.+|++|+++++++++++++ +++|++.+...        .           ..+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV-RSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH-HHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999999999999999998 57886532100        0           0123344


Q ss_pred             hcCCccEEEEcCCCc------hhHHHHHHhcccCcEEEEEcCCCceeeC----hhhhhcCCeeeeeec
Q 022313          241 LGKSLDFIIDTASGD------HPFDAYMSLLKVAGVYVLVGFPSKVKFS----PASLNIGNAPLFRFK  298 (299)
Q Consensus       241 ~~~~~d~v~d~~g~~------~~~~~~~~~l~~~G~~v~~g~~~~~~~~----~~~l~~~~~~~~g~~  298 (299)
                      ...++|+||.++.-+      ...+..++.+++++.+++++......+.    ...+..+++++.+..
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~  329 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPL  329 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCS
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeC
Confidence            458999999986321      2357899999999999999755111121    112334566666543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.42  E-value=1.1e-06  Score=79.09  Aligned_cols=118  Identities=19%  Similarity=0.207  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC-------------C----C------HH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS-------------S----D------LE  236 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~-------------~----~------~~  236 (299)
                      ++.+|+|+|+|.+|+.+++.++.+|++|+++++++++++.+ +++|.+.+...             .    +      ..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV-ASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH-HHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            67899999999999999999999999999999999999888 57886532110             0    0      12


Q ss_pred             HHHHhcCCccEEEEcCCCc------hhHHHHHHhcccCcEEEEEcCC--Cceee--ChhhhhcCCeeeeeec
Q 022313          237 QMKALGKSLDFIIDTASGD------HPFDAYMSLLKVAGVYVLVGFP--SKVKF--SPASLNIGNAPLFRFK  298 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~------~~~~~~~~~l~~~G~~v~~g~~--~~~~~--~~~~l~~~~~~~~g~~  298 (299)
                      .+.+...+.|+||.++..+      ...+..++.|++++.+++++..  +....  +...+..+++++.|..
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence            3344457899999986422      2467899999999999999753  21111  1122335677776653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.30  E-value=8.6e-06  Score=60.03  Aligned_cols=95  Identities=17%  Similarity=0.076  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      .+.+|+|+|+|.+|...++.+...| .+|+++++++++.+.+. ..+...+ .+..+.+.+.+.-.++|+||++++....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            4568999999999999999999999 79999999998888773 5554433 3455566666666799999999987653


Q ss_pred             HHHHHHhcccCcEEEEEc
Q 022313          258 FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g  275 (299)
                      ......+.+.+-.++.+.
T Consensus        83 ~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHhCCCEEEec
Confidence            444444555555555543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.18  E-value=5e-06  Score=65.01  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh-cCCccEEEEcCCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL-GKSLDFIIDTASGDH  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  256 (299)
                      .++++|+|+|+|.+|+..++.++..|.+|+++++++++.+.+.++.|...+. +..+.+.+.+. ..++|+||.+++...
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence            6788999999999999999999999999999999988877662255654332 23344445444 367999999999876


Q ss_pred             hHHHHHHhccc
Q 022313          257 PFDAYMSLLKV  267 (299)
Q Consensus       257 ~~~~~~~~l~~  267 (299)
                      ....+...++.
T Consensus        97 ~~~~~~~~~~~  107 (155)
T 2g1u_A           97 TNFFISMNARY  107 (155)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45555555554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.18  E-value=1.9e-05  Score=68.48  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=75.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -++++|+|+|.|.+|..+++.++..|++|++++++.++.+.+ +++|.+. ++.   +.+.++....|+|+.++.....-
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~-~~~---~~l~~~l~~aDvVi~~~p~~~i~  227 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI-AEMGMEP-FHI---SKAAQELRDVDVCINTIPALVVT  227 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTSEE-EEG---GGHHHHTTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHCCCee-cCh---hhHHHHhcCCCEEEECCChHHhC
Confidence            578999999999999999999999999999999998877666 4677653 222   23445557899999999865534


Q ss_pred             HHHHHhcccCcEEEEEcCC
Q 022313          259 DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...+..+++++.++.++..
T Consensus       228 ~~~l~~mk~~~~lin~ar~  246 (293)
T 3d4o_A          228 ANVLAEMPSHTFVIDLASK  246 (293)
T ss_dssp             HHHHHHSCTTCEEEECSST
T ss_pred             HHHHHhcCCCCEEEEecCC
Confidence            5678899999999999865

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.15  E-value=1.7e-05  Score=67.95  Aligned_cols=99  Identities=22%  Similarity=0.278  Sum_probs=78.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+|+++||.|+ +++|.+.++.+...|++|+++++++++++++.+++|....   .|-.+.+.++++       -++.|+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi  106 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDV  106 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36899999998 8999999999999999999999999999988888884322   244455444332       278999


Q ss_pred             EEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++++|..                         .+.+.+++.|+++|.++.++..
T Consensus       107 LVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~  161 (273)
T 4fgs_A          107 LFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGST  161 (273)
T ss_dssp             EEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             EEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeeh
Confidence            99999842                         2356677788999999999876

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.14  E-value=1.4e-05  Score=72.17  Aligned_cols=102  Identities=20%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             HHHHhhhcc-CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          168 VYTPMMRHK-MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       168 a~~al~~~~-~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      .+.++.+.. ..-.|++|+|+|.|.+|...++.++.+|++|+++++++.+..++ ...|.+. .      .+.++-...|
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-~~~G~~v-~------~Leeal~~AD  277 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-CMDGFRL-V------KLNEVIRQVD  277 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEE-C------CHHHHTTTCS
T ss_pred             HHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-HHcCCEe-c------cHHHHHhcCC
Confidence            345554443 34689999999999999999999999999999999988766555 3556432 1      2345567899


Q ss_pred             EEEEcCCCchhHH-HHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGDHPFD-AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~  277 (299)
                      +++.|.+....+. ..++.|++++.++.+|..
T Consensus       278 IVi~atgt~~lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          278 IVITCTGNKNVVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             EEEECSSCSCSBCHHHHHHSCTTEEEEECSST
T ss_pred             EEEECCCCcccCCHHHHHhcCCCcEEEEecCC
Confidence            9999988766554 789999999999999877

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.08  E-value=3.6e-06  Score=71.84  Aligned_cols=95  Identities=19%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      .++.+||.+|+|. |..+..+++.. +.++++++.+++..+.+.+......++..+. ..+....+.||+|+.... ...
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~-~~~  160 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA-PCK  160 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC-CCC
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC-hhh
Confidence            6788999999988 88888999876 6799999999999888855543333333221 111111257999996544 445


Q ss_pred             HHHHHHhcccCcEEEEEcC
Q 022313          258 FDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~  276 (299)
                      +..+.+.|+++|+++....
T Consensus       161 l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          161 AEELARVVKPGGWVITATP  179 (269)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEEc
Confidence            9999999999999987743

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.06  E-value=2.2e-05  Score=68.40  Aligned_cols=94  Identities=20%  Similarity=0.217  Sum_probs=75.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -++++|+|+|.|.+|..+++.++..|++|++++++.++.+.+ +++|.+ .++.   ..+.++..+.|+|+.+++....-
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~-~~~~---~~l~~~l~~aDvVi~~~p~~~i~  229 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI-TEMGLV-PFHT---DELKEHVKDIDICINTIPSMILN  229 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCE-EEEG---GGHHHHSTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCe-EEch---hhHHHHhhCCCEEEECCChhhhC
Confidence            578999999999999999999999999999999998877666 457764 3322   23455567899999999975544


Q ss_pred             HHHHHhcccCcEEEEEcCC
Q 022313          259 DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...+..+++++.++.++..
T Consensus       230 ~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          230 QTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             HHHHTTSCTTCEEEECSST
T ss_pred             HHHHHhCCCCCEEEEEeCC
Confidence            5678899999999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.03  E-value=5.3e-05  Score=60.73  Aligned_cols=95  Identities=9%  Similarity=0.093  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh--cCCccEEEEcCCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL--GKSLDFIIDTASGD  255 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~--~~~~d~v~d~~g~~  255 (299)
                      .+++|+|+|.|.+|...++.++.. |.+|+++++++++.+.+ ++.|...+. +..+.+.+.+.  ..++|+|+.++++.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~-~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~  116 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH-RSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH  116 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH-HHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH-HHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence            356799999999999999999998 99999999999988887 567876544 45556666666  47899999999986


Q ss_pred             hhHHHHH---HhcccCcEEEEEc
Q 022313          256 HPFDAYM---SLLKVAGVYVLVG  275 (299)
Q Consensus       256 ~~~~~~~---~~l~~~G~~v~~g  275 (299)
                      .....+.   +.+.+..+++...
T Consensus       117 ~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          117 QGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEE
Confidence            5333333   3444455666554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.99  E-value=4.3e-05  Score=65.50  Aligned_cols=187  Identities=17%  Similarity=0.141  Sum_probs=104.7

Q ss_pred             ecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecc--eEEEcCCCCCc
Q 022313           78 VGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHER--YCYKIANDYPL  155 (299)
Q Consensus        78 vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~--~~~~~p~~~~~  155 (299)
                      +|+....+++||+|.+... ..+..+..+..+..-++......+..+      ....+.+.+.++..  ....-|....+
T Consensus        13 ~~~~~~~~~~gd~v~i~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~i------~g~~~g~~~~~~~~~~~~~~~p~~~~~   85 (277)
T 1o54_A           13 VGKVADTLKPGDRVLLSFE-DESEFLVDLEKDKKLHTHLGIIDLNEV------FEKGPGEIIRTSAGKKGYILIPSLIDE   85 (277)
T ss_dssp             CCCGGGCCCTTCEEEEEET-TSCEEEEECCTTCEEEETTEEEEHHHH------TTSCTTCEEECTTCCEEEEECCCHHHH
T ss_pred             cccccCCCCCCCEEEEEEC-CCcEEEEEEcCCCEEecCCceEEHHHh------cCCCCCcEEEEcCCcEEEEeCCCHHHH
Confidence            4555567999999987543 234344444545444444332221111      01123334444433  23333432222


Q ss_pred             cccc----ccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CC
Q 022313          156 ALAA----PLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GA  226 (299)
Q Consensus       156 ~~aa----~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~  226 (299)
                      .+..    .....- .+-..+... .+.++++||-+|+|. |..+..+++..  +.+++.++.+++..+.+.+.+   +.
T Consensus        86 ~~~~~~~~~~~~~~-~~~~i~~~~-~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  162 (277)
T 1o54_A           86 IMNMKRRTQIVYPK-DSSFIAMML-DVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL  162 (277)
T ss_dssp             HHTCCC-CCCCCHH-HHHHHHHHT-TCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HhhccccCCccCHH-HHHHHHHHh-CCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC
Confidence            1111    001011 111223333 348899999999987 88888888885  469999999988877764432   43


Q ss_pred             -C--EEEeCCCHHHHHHh-cCCccEEEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          227 -D--KFVVSSDLEQMKAL-GKSLDFIIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       227 -~--~v~~~~~~~~~~~~-~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +  .++.. +....  + .+.||+|+...... ..+..+.+.|+++|+++.....
T Consensus       163 ~~~v~~~~~-d~~~~--~~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          163 IERVTIKVR-DISEG--FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             GGGEEEECC-CGGGC--CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             CCCEEEEEC-CHHHc--ccCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             1  22222 21111  2 25699999877665 5688899999999999987553

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.92  E-value=4.5e-05  Score=65.87  Aligned_cols=99  Identities=16%  Similarity=0.286  Sum_probs=73.6

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC--EEEeCCCHHHHHHhcCCccEEEE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD--KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      ..++++++||.+|+|+.++.++.+++..|++|+.++.+++..+.+++.   .|.+  .++..+..+ +.  .+.||+|+.
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~--d~~FDvV~~  194 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-ID--GLEFDVLMV  194 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GG--GCCCSEEEE
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CC--CCCcCEEEE
Confidence            456999999999999878888888888899999999999988877543   2432  222222222 21  478999997


Q ss_pred             cCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....+   ..++.+.+.|+|+|+++.....
T Consensus       195 ~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          195 AALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            65543   3688899999999999977543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.88  E-value=3.9e-05  Score=69.54  Aligned_cols=102  Identities=18%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             HHHHhhhc-cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          168 VYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       168 a~~al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      .+.++.+. ...-.|++|+|+|.|.+|...++.++.+|++|+++++++.+..++ ...|... .+      +.++-...|
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-~~~G~~v-v~------LeElL~~AD  304 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-AMDGFEV-VT------LDDAASTAD  304 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEE-CC------HHHHGGGCS
T ss_pred             HHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-HhcCcee-cc------HHHHHhhCC
Confidence            34444433 334789999999999999999999999999999999887665555 3456532 21      234556799


Q ss_pred             EEEEcCCCchhH-HHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGDHPF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+.+.+....+ ...+..|++++.++.+|-.
T Consensus       305 IVv~atgt~~lI~~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          305 IVVTTTGNKDVITIDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             EEEECCSSSSSBCHHHHHHSCTTEEEEECSSS
T ss_pred             EEEECCCCccccCHHHHhcCCCCeEEEEcCCC
Confidence            999999876543 6789999999999998866

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.88  E-value=2.6e-05  Score=71.66  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=73.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.|++++|.|+|.+|...++.++..|++|+++++++.+..++. ..+.+ +.+      ..+....+|+++++.|....+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~~------lee~~~~aDvVi~atG~~~vl  334 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VLT------LEDVVSEADIFVTTTGNKDII  334 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECC------GGGTTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cCC------HHHHHHhcCEEEeCCCChhhh
Confidence            5799999999999999999999999999999999888777763 45542 211      123446899999999976644


Q ss_pred             -HHHHHhcccCcEEEEEcCC
Q 022313          259 -DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 -~~~~~~l~~~G~~v~~g~~  277 (299)
                       ...++.+++++.++.+|..
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSST
T ss_pred             hHHHHHhcCCCeEEEEcCCC
Confidence             4488999999999999876

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.87  E-value=3.4e-05  Score=69.86  Aligned_cols=106  Identities=16%  Similarity=0.225  Sum_probs=80.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.|++|.|+|.|.+|...++.++.+|++|+++++++.+..++ ...|....       .+.++....|+++.+.+....+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A-~~~G~~~~-------sL~eal~~ADVVilt~gt~~iI  280 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA-AMEGYQVL-------LVEDVVEEAHIFVTTTGNDDII  280 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-------CHHHHTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH-HHhCCeec-------CHHHHHhhCCEEEECCCCcCcc
Confidence            579999999999999999999999999999999988766665 35665321       3455667899999988875544


Q ss_pred             H-HHHHhcccCcEEEEEcCCCceeeChhhhhcCCee
Q 022313          259 D-AYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAP  293 (299)
Q Consensus       259 ~-~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~  293 (299)
                      . ..+..|+++..++.+|-. .+.+++..+..+.++
T Consensus       281 ~~e~l~~MK~gAIVINvgRg-~vEID~~~L~~~~~~  315 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHF-DTEIQVAWLKANAKE  315 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSS-GGGBCHHHHHHHCSE
T ss_pred             CHHHHhhcCCCcEEEEeCCC-CCccCHHHHHhhcCc
Confidence            3 678899999999888743 445666666544433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.87  E-value=0.00022  Score=54.47  Aligned_cols=96  Identities=15%  Similarity=0.082  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchh
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHP  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~  257 (299)
                      -.++|+|+|.|.+|...++.++..|.+|+++++++++.+.+ ++.|...+. +..+.+.+.+.. .++|+++.+++....
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~-~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~   84 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL-RERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence            34679999999999999999999999999999999999888 467765443 445566666553 689999999998652


Q ss_pred             H---HHHHHhcccCcEEEEEcC
Q 022313          258 F---DAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       258 ~---~~~~~~l~~~G~~v~~g~  276 (299)
                      .   ....+.+.+..+++....
T Consensus        85 n~~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           85 AGEIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             HHHHHHHHHHHCSSSEEEEEES
T ss_pred             HHHHHHHHHHHCCCCeEEEEEC
Confidence            2   234455666777665543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.83  E-value=0.00015  Score=61.29  Aligned_cols=99  Identities=20%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ +++|...++.+...|++|+++++++++.+.+.++++... .  .|..+.+.+.++       .+++|+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            36789999988 899999999999999999999999998888877766332 2  244454444332       268999


Q ss_pred             EEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++.|..                         ...+.+++.++.+|+++.++..
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            99998842                         1234455666778999999876

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.71  E-value=0.00028  Score=53.79  Aligned_cols=75  Identities=24%  Similarity=0.164  Sum_probs=59.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCch
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDH  256 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~  256 (299)
                      .++++|+|+|.+|...++.+...|.+|+++++++++.+.+. +.+...+. +..+.+.+.+.. .++|+++.+++...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~-~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLE-DEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            46799999999999999999999999999999999888884 55654332 455566666653 68999999999754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.68  E-value=0.00043  Score=58.16  Aligned_cols=75  Identities=27%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE---eCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ +++|...++.+...|++|+++++++++.+.+.++++.....   |..+.+.++++       .+++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            5789999988 89999999999999999999999998888877777643322   34444444332       2689999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      ++++|.
T Consensus        85 v~nAg~   90 (247)
T 3rwb_A           85 VNNASI   90 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.66  E-value=0.0002  Score=63.11  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhcC----------------CCEEEeCCCHHHH
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLLG----------------ADKFVVSSDLEQM  238 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~g----------------~~~v~~~~~~~~~  238 (299)
                      .++++++||-+|+|. |..+..+++..|  .+|+.++.+++..+.+.+.+.                .-.++..+-.+..
T Consensus       102 ~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          102 DINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence            348999999999976 778888888765  699999999887777644321                1122222211111


Q ss_pred             HHh-cCCccEEEEcCCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          239 KAL-GKSLDFIIDTASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~-~~~~d~v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..+ .+.||+|+-....+. .+..+.+.|+++|+++.....
T Consensus       181 ~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          181 EDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             -------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            112 246999987665543 478899999999999977544

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.66  E-value=0.00024  Score=62.04  Aligned_cols=108  Identities=11%  Similarity=0.127  Sum_probs=71.7

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC---chHHHHHHHhcC----C-CEEEeCCCHHHHH
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS---TSKKEEALSLLG----A-DKFVVSSDLEQMK  239 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~---~~~~~~~~~~~g----~-~~v~~~~~~~~~~  239 (299)
                      ..+|+....--.+++++|+|+|++|.+++..+...|+ +|+++.|+   .++.+.+.++++    . -.+++..+.+.+.
T Consensus       142 ~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~  221 (315)
T 3tnl_A          142 MRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLR  221 (315)
T ss_dssp             HHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHH
Confidence            3445443332478999999999999999999999999 89999999   667666655543    2 2344555544455


Q ss_pred             HhcCCccEEEEcCCCchh-----HHH-HHHhcccCcEEEEEcC
Q 022313          240 ALGKSLDFIIDTASGDHP-----FDA-YMSLLKVAGVYVLVGF  276 (299)
Q Consensus       240 ~~~~~~d~v~d~~g~~~~-----~~~-~~~~l~~~G~~v~~g~  276 (299)
                      +....+|+|+++++-...     ... ....++++..++++-.
T Consensus       222 ~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY  264 (315)
T 3tnl_A          222 KEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVY  264 (315)
T ss_dssp             HHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCC
T ss_pred             hhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEecc
Confidence            544679999999863210     001 2345667766666643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.65  E-value=0.00046  Score=58.75  Aligned_cols=76  Identities=30%  Similarity=0.381  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE---eCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+++.++++....+   |..+.+.++++       .+++|+
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            46789999987 89999999999999999999999999888877777744322   44455444332       268999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      +++++|.
T Consensus       105 lvnnAg~  111 (266)
T 3grp_A          105 LVNNAGI  111 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.63  E-value=0.00018  Score=54.70  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh-cCCccEEEEcCCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL-GKSLDFIIDTASGD  255 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~v~d~~g~~  255 (299)
                      ++++|+|+|+|.+|...++.+...|.+|+++++++++.+.+ ++.+...+. +..+.+.+.+. .+++|+++.+++..
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT-TTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            34679999999999999999999999999999988777665 344543322 33445555554 36799999999975

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.63  E-value=0.00066  Score=57.47  Aligned_cols=98  Identities=22%  Similarity=0.199  Sum_probs=70.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEEE---eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKFV---VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v~---~~~~~~~~~~~-------~~~~  245 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++.++..+++   |.+...   |-.+++.++++       -++.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            6899999987 89999999999999999999999988776654443   433322   33444444332       3689


Q ss_pred             cEEEEcCCCc-------------------------hhHHHHHHhcc---cCcEEEEEcCC
Q 022313          246 DFIIDTASGD-------------------------HPFDAYMSLLK---VAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~-------------------------~~~~~~~~~l~---~~G~~v~~g~~  277 (299)
                      |++++++|..                         ...+.+++.|.   .+|+++.++..
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~  147 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL  147 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence            9999999831                         12445566562   46899999877

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.60  E-value=0.001  Score=56.38  Aligned_cols=98  Identities=23%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... .  .|..+.+.+.++       .+++|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            5688999998 899999999999999999999999988887766665221 2  244455444332       2578999


Q ss_pred             EEcCCCch-------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDH-------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++.|...                         ..+.+.+.++.+|+++.++..
T Consensus        85 vnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  138 (263)
T 2a4k_A           85 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  138 (263)
T ss_dssp             EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            99987311                         123334445447999999877

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.60  E-value=0.00053  Score=56.35  Aligned_cols=96  Identities=6%  Similarity=0.034  Sum_probs=68.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHH-HCCCeEEEEeCCch-HHHHHHHhcCCCEEE--eCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          182 KSLGVIGL-GGLGHMAVKFGK-AFGLNVTVLSTSTS-KKEEALSLLGADKFV--VSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~-~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      ++|||.|+ |.+|...++.+. ..|++|++++|+++ +.+.+.+....-.++  +..+.+.+.+.-.++|++|.++|...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            46999997 999999998888 89999999999987 665552122222222  55566677666679999999999742


Q ss_pred             h-HHHHHHhcccC--cEEEEEcCC
Q 022313          257 P-FDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 ~-~~~~~~~l~~~--G~~v~~g~~  277 (299)
                      . .+.+++.++..  ++++.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~iv~iSs~  109 (221)
T 3r6d_A           86 SDMASIVKALSRXNIRRVIGVSMA  109 (221)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             hhHHHHHHHHHhcCCCeEEEEeec
Confidence            1 34455555543  588888766

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.59  E-value=0.00038  Score=59.46  Aligned_cols=76  Identities=21%  Similarity=0.237  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~-------~~~~d~  247 (299)
                      ..++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++.. ..+  |..+.+.++++       .+++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45788999988 89999999999999999999999999888877777632 222  44455444433       258999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      +++++|.
T Consensus       106 lVnnAg~  112 (272)
T 4dyv_A          106 LFNNAGT  112 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.58  E-value=0.00057  Score=58.53  Aligned_cols=99  Identities=19%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++.. ..+  |..+.+.+.++       .+++|+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35788999987 89999999999999999999999998888877777632 222  44455444332       268999


Q ss_pred             EEEcCCCch-------------------------hHHHHHHhc--ccCcEEEEEcCC
Q 022313          248 IIDTASGDH-------------------------PFDAYMSLL--KVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~  277 (299)
                      +++++|...                         ..+.+++.+  +.+|+++.++..
T Consensus       107 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~  163 (277)
T 3gvc_A          107 LVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSL  163 (277)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence            999998420                         133344444  456899999776

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.57  E-value=0.00016  Score=60.67  Aligned_cols=98  Identities=16%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-CEEEeCCCHHHHHHh---cCCccEEEEcCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-DKFVVSSDLEQMKAL---GKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~---~~~~d~v~d~~g  253 (299)
                      =+|+++||.|+ +++|.+.++.+...|++|+++++++++.+... .-.. ....|-.+.+.++++   -++.|+++++.|
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR-HPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC-CTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh-cCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            36999999988 89999999999999999999999877665331 1111 112344555555443   378999999998


Q ss_pred             Cc-----------------------hhHHHHHHhcc-cCcEEEEEcCC
Q 022313          254 GD-----------------------HPFDAYMSLLK-VAGVYVLVGFP  277 (299)
Q Consensus       254 ~~-----------------------~~~~~~~~~l~-~~G~~v~~g~~  277 (299)
                      -.                       ...+.+++.|+ .+|++|.+++.
T Consensus        88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  135 (242)
T 4b79_A           88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM  135 (242)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            32                       12344555664 57999999876

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.57  E-value=0.0011  Score=49.91  Aligned_cols=76  Identities=13%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh-cCCccEEEEcCCCch
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL-GKSLDFIIDTASGDH  256 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  256 (299)
                      +.+|+|+|+|.+|...++.+...|.+|+++++++++.+.+.++++...+. +..+.+.+.+. ..++|+|+.+++...
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   81 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   81 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence            45799999999999999999989999999999988887775556654332 33344555443 368999999998764

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.56  E-value=0.00068  Score=56.86  Aligned_cols=75  Identities=21%  Similarity=0.273  Sum_probs=56.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE--EE--eCCCHHHHHHh------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK--FV--VSSDLEQMKAL------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~--~~~~~~~~~~~------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++...  .+  |..+.+.+.++      .+++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            5688999998 999999999999999999999999888777656655322  22  44455444332      2689999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.++|.
T Consensus        90 i~~Ag~   95 (254)
T 2wsb_A           90 VNSAGI   95 (254)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999884

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.56  E-value=0.00073  Score=55.07  Aligned_cols=97  Identities=16%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +.++++||-+|+|. |..++.+++. +.+|+.++.+++..+.+++.   .|.+   .++..+-.+.+.. ...||+|+..
T Consensus        53 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-~~~~D~v~~~  129 (204)
T 3njr_A           53 PRRGELLWDIGGGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-LPLPEAVFIG  129 (204)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-SCCCSEEEEC
T ss_pred             CCCCCEEEEecCCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-CCCCCEEEEC
Confidence            38899999999986 8888888888 88999999999888776433   3533   3333332221211 2579999976


Q ss_pred             CCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          252 ASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+... .++.+.+.|+++|+++.....
T Consensus       130 ~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          130 GGGSQALYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             SCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CcccHHHHHHHHHhcCCCcEEEEEecC
Confidence            55433 678889999999999987655

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.55  E-value=0.00059  Score=56.67  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      -++.+|||.|+ |.+|...++.+...|++|++++|++++.+.+ ...+..+++..+-.+.+.+.-+++|+||.++|... 
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~~   97 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL-RERGASDIVVANLEEDFSHAFASIDAVVFAAGSGPH   97 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCCTT
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH-HhCCCceEEEcccHHHHHHHHcCCCEEEECCCCCCC
Confidence            35788999998 9999999999999999999999999988877 34455133322211233333468999999998531 


Q ss_pred             ------------hHHHHHHhccc--CcEEEEEcCC
Q 022313          257 ------------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       257 ------------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                                  ....+++.++.  .++++.++..
T Consensus        98 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  132 (236)
T 3e8x_A           98 TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV  132 (236)
T ss_dssp             SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred             CCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence                        12223333332  3689988776

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.54  E-value=0.00035  Score=59.98  Aligned_cols=76  Identities=24%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC----CC-EEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG----AD-KFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g----~~-~v~--~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++.    .. ..+  |..+.+.+.++       .+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36789999988 899999999999999999999999887776654442    22 222  44455444332       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus       111 ~iD~lvnnAG~  121 (281)
T 4dry_A          111 RLDLLVNNAGS  121 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999984

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.53  E-value=0.001  Score=56.02  Aligned_cols=75  Identities=23%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EE--eCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FV--VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~--~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... .+  |..+.+.++++       .+++|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5678999988 899999999999999999999999888877766665332 22  34444443332       2578999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      ++++|.
T Consensus        85 v~~Ag~   90 (253)
T 1hxh_A           85 VNNAGI   90 (253)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.53  E-value=0.00023  Score=60.92  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=69.9

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHhc-CCccE
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKALG-KSLDF  247 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~-~~~d~  247 (299)
                      .+++....--++++++|+|+|++|.++++.+...|++|+++.|+.++.+.+.++++.. .+ +..+.+   ++. +++|+
T Consensus       108 ~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~-~~~~~~---~~~~~~~Di  183 (271)
T 1nyt_A          108 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSI-QALSMD---ELEGHEFDL  183 (271)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSE-EECCSG---GGTTCCCSE
T ss_pred             HHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCe-eEecHH---HhccCCCCE
Confidence            3444332224678999999999999999999999999999999998888776776531 11 111111   122 68999


Q ss_pred             EEEcCCCchhHH---HHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGDHPFD---AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~~~~---~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++++....-.   .....++++..++++...
T Consensus       184 vVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~  216 (271)
T 1nyt_A          184 IINATSSGISGDIPAIPSSLIHPGIYCYDMFYQ  216 (271)
T ss_dssp             EEECCSCGGGTCCCCCCGGGCCTTCEEEESCCC
T ss_pred             EEECCCCCCCCCCCCCCHHHcCCCCEEEEeccC
Confidence            999999754200   012345666777777554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.50  E-value=0.001  Score=56.18  Aligned_cols=98  Identities=11%  Similarity=0.114  Sum_probs=68.6

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCC--CEE--EeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGA--DKF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~--~~v--~~~~~~~~~~~~-------~  242 (299)
                      +|+++||.|+ |  ++|++.++.+...|++|++++++++..+++.+   +++.  -..  .|-.+.+.+.++       -
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6899999996 5  79999999999999999999999877665533   3442  122  244454444332       2


Q ss_pred             CCccEEEEcCCCch-----------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          243 KSLDFIIDTASGDH-----------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       243 ~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++|+++++.|...                             ........++.+|+++.+++.
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~  148 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL  148 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence            78999999988310                             112334567788999999876

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.50  E-value=0.00085  Score=57.76  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             CCCCEEEEEc-CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCC-EEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GAD-KFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G-~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      -++++++|+| +|++|.+++..+...|++|+++.|+.++.+.+.+++    +.. ...+..+.+.+.+.-..+|++++++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            4678999999 599999999999999999999999988777665444    322 2345666666666667799999999


Q ss_pred             C
Q 022313          253 S  253 (299)
Q Consensus       253 g  253 (299)
                      +
T Consensus       197 g  197 (287)
T 1lu9_A          197 A  197 (287)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.48  E-value=0.00081  Score=57.48  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~-------~~~~d~v  248 (299)
                      .++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++.. ..+  |..+.+.++++       .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4688999987 99999999999999999999999999888876676632 222  44455444332       2589999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.++|.
T Consensus        84 v~~Ag~   89 (281)
T 3m1a_A           84 VNNAGR   89 (281)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999984

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.48  E-value=0.0019  Score=54.16  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++ ++.+...++.+... .  .|..+.+.+.++       .+++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   85 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            5688999998 8999999999999999999999987 66554335555322 2  244455444432       268999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      +++++|.
T Consensus        86 lv~nAg~   92 (249)
T 2ew8_A           86 LVNNAGI   92 (249)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.48  E-value=0.00069  Score=58.74  Aligned_cols=96  Identities=17%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      -++++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++..  .+++   .+.+.+...++|+|+++++..
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~---~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS---LAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC---HHHHHHTGGGCSEEEECSCTT
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee---HHHHHhhhccCCEEEECCCCC
Confidence            467899999999999999999999998 9999999999988887787752  2322   233444557899999999864


Q ss_pred             hhH-----HHHHHhcccCcEEEEEcCC
Q 022313          256 HPF-----DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       256 ~~~-----~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...     ......++++..++++...
T Consensus       216 ~~~~~~~~~i~~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          216 MHPRVEVQPLSLERLRPGVIVSDIIYN  242 (297)
T ss_dssp             CSSCCSCCSSCCTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEcCCC
Confidence            310     0112456777778887654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.47  E-value=0.0014  Score=55.37  Aligned_cols=75  Identities=16%  Similarity=0.137  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++... ..  .|..+.+.+.++       .+++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999998 89999999999999999999999988877765555421 22  244455444432       2589999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      ++++|.
T Consensus        91 v~~Ag~   96 (263)
T 3ak4_A           91 CANAGV   96 (263)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999883

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.47  E-value=0.00061  Score=58.15  Aligned_cols=99  Identities=24%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc----C--CC--EEEeCCCHHHHHHhcCCcc
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL----G--AD--KFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~----g--~~--~v~~~~~~~~~~~~~~~~d  246 (299)
                      .++++++||-+|+| .|..+..+++..  +.+++.++.+++..+.+.+.+    |  .+  .++.. +........+.||
T Consensus        96 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~-d~~~~~~~~~~~D  173 (280)
T 1i9g_A           96 DIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS-DLADSELPDGSVD  173 (280)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS-CGGGCCCCTTCEE
T ss_pred             CCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC-chHhcCCCCCcee
Confidence            34899999999998 688888888865  469999999988877775433    3  22  22222 2111110135799


Q ss_pred             EEEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+...... ..+..+.+.|+++|+++.+...
T Consensus       174 ~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          174 RAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             EEEEESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             EEEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            999877655 5688899999999999987654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.45  E-value=0.00056  Score=57.62  Aligned_cols=97  Identities=13%  Similarity=0.083  Sum_probs=69.6

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCCccEEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++|||.|+ +++|.+.++.+...|++|+++++++++.+++.++.+....+  |-.+.+.++++       -++.|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            378999987 89999999999999999999999999888886554432222  44455444332       278999999


Q ss_pred             cCCCc-------------------------hhHHHHHHhc-ccCcEEEEEcCC
Q 022313          251 TASGD-------------------------HPFDAYMSLL-KVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~-------------------------~~~~~~~~~l-~~~G~~v~~g~~  277 (299)
                      ++|..                         ...+.+.+.| +.+|+++.+++.
T Consensus        82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~  134 (247)
T 3ged_A           82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIAST  134 (247)
T ss_dssp             CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeec
Confidence            99831                         1233344444 457999998776

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.43  E-value=0.0021  Score=54.47  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-----CC-EE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-----AD-KF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-----~~-~v--~~~~~~~~~~~~-------~~  243 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++.     .. ..  .|..+.+.+.++       .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5688999998 999999999999999999999999877665433332     11 12  244455444332       25


Q ss_pred             CccEEEEcCCCch-----------------hHHHHHHhccc-----CcEEEEEcCC
Q 022313          244 SLDFIIDTASGDH-----------------PFDAYMSLLKV-----AGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~-----------------~~~~~~~~l~~-----~G~~v~~g~~  277 (299)
                      ++|++++++|...                 ..+.+++.++.     .|+++.++..
T Consensus        86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            7999999998421                 12334455543     5899998776

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.43  E-value=0.00086  Score=56.71  Aligned_cols=99  Identities=23%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHhc---CC-CEEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKA-FGLNVTVLSTSTSKKEEALSLL---GA-DKFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~-~g~~v~~~~~~~~~~~~~~~~~---g~-~~v~--~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+ |++|...++.+.. .|++|++++++.++.+.+.+++   +. -.++  |..+.+.+.++       .+
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35788999988 9999999998888 8999999999977666554433   32 2222  44454444332       24


Q ss_pred             CccEEEEcCCCc----------h---------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD----------H---------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++|.++|..          .               ..+.+++.+++.|+++.++..
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~  140 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  140 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence            899999998742          0               122334455567899999776

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.42  E-value=0.00056  Score=59.60  Aligned_cols=108  Identities=12%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC---chHHHHHHHhcC----CC-EEEeCCCHHHHH
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS---TSKKEEALSLLG----AD-KFVVSSDLEQMK  239 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~---~~~~~~~~~~~g----~~-~v~~~~~~~~~~  239 (299)
                      ..+++....--++++++|+|+|+.|.+++..+...|+ +|+++.|+   .++.+.+.++++    .. ..++..+.+...
T Consensus       136 ~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~  215 (312)
T 3t4e_A          136 IRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFT  215 (312)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhH
Confidence            3445443332468899999999999999999999998 89999999   666666655443    21 234444432223


Q ss_pred             HhcCCccEEEEcCCCch--hHHH----HHHhcccCcEEEEEcC
Q 022313          240 ALGKSLDFIIDTASGDH--PFDA----YMSLLKVAGVYVLVGF  276 (299)
Q Consensus       240 ~~~~~~d~v~d~~g~~~--~~~~----~~~~l~~~G~~v~~g~  276 (299)
                      +....+|+||++++-..  .-..    ....++++..++++-.
T Consensus       216 ~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY  258 (312)
T 3t4e_A          216 EALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVY  258 (312)
T ss_dssp             HHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCC
T ss_pred             hhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEecc
Confidence            33356899999887431  0000    1245666666666643

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.42  E-value=0.0012  Score=55.08  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhc---CCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALG---KSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~---~~~d~v~d~~g  253 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++....++  |..+.+.+.++-   +++|++++++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            5789999998 99999999999999999999999988877765555432333  444555555442   46899999998


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        86 ~   86 (244)
T 3d3w_A           86 V   86 (244)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.42  E-value=0.00074  Score=57.08  Aligned_cols=76  Identities=20%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EE--eCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FV--VSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~--~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++... .+  |..+.+.+.++       .+++|+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999998 899999999999999999999999988888777776432 22  44455444332       258999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      +++++|.
T Consensus        86 lv~~Ag~   92 (259)
T 4e6p_A           86 LVNNAAL   92 (259)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.42  E-value=0.00084  Score=57.34  Aligned_cols=75  Identities=21%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-CE--E--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-DK--F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~--v--~~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++   +. ..  +  .|..+.+.+.++       .+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5688999998 99999999999999999999999987766553332   31 11  2  244455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++|.++|.
T Consensus       111 ~iD~vi~~Ag~  121 (279)
T 1xg5_A          111 GVDICINNAGL  121 (279)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999983

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.42  E-value=0.0017  Score=54.74  Aligned_cols=74  Identities=23%  Similarity=0.191  Sum_probs=53.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      ++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. ..  .|..+.+.+.++       .+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            468999998 89999999999999999999999987766554333   422 22  244455444332       25899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++++++|.
T Consensus        82 ~lv~nAg~   89 (256)
T 1geg_A           82 VIVNNAGV   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.42  E-value=0.00089  Score=57.14  Aligned_cols=96  Identities=16%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..++|...++...++....--.|++++|+|.| .+|..+++++...|++|++..+....++                   
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------  199 (285)
T 3l07_A          139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------  199 (285)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------
Confidence            35666666777777766554689999999985 5899999999999999988865433222                   


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        +..+.+|+|+.++|.+..+  -.++++++..++++|..
T Consensus       200 --~~~~~ADIVI~Avg~p~~I--~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          200 --SHTTKADILIVAVGKPNFI--TADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             --HHHTTCSEEEECCCCTTCB--CGGGSCTTCEEEECCCE
T ss_pred             --HhcccCCEEEECCCCCCCC--CHHHcCCCcEEEEeccc
Confidence              2336789999999977533  23678999999999866

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.41  E-value=0.001  Score=55.80  Aligned_cols=75  Identities=17%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++...+ .|..+.+.+.++       .+++|++++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999998 8999999999999999999999998888777666663322 244455444332       257999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        84 ~Ag~   87 (245)
T 1uls_A           84 YAGI   87 (245)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9983

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.41  E-value=0.0012  Score=51.89  Aligned_cols=99  Identities=22%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHh---cCCC-E-EEeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSL---LGAD-K-FVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~---~g~~-~-v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      ++++++||-+|+|. |..+..+++.. +.++++++.+++..+.+++.   .+.+ . .+..+..+.+....+.||+|+..
T Consensus        23 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           23 PKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred             ccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence            48889999999986 88888888876 46999999998877776433   3433 2 33333223333333789999976


Q ss_pred             CCCc--hhHHHHHHhcccCcEEEEEcCC
Q 022313          252 ASGD--HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~~--~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....  ..++.+.+.|+++|+++.....
T Consensus       102 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A          102 GGLTAPGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             C-TTCTTHHHHHHHTCCTTCEEEEEECS
T ss_pred             CcccHHHHHHHHHHhcCCCCEEEEEeec
Confidence            5433  3689999999999999987655

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.41  E-value=0.0011  Score=56.09  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=70.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.++..+++   |.+..   .|-.+.+.++++       -++.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5889999988 89999999999999999999999998877665443   53322   244455554433       2789


Q ss_pred             cEEEEcCCCc--------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          246 DFIIDTASGD--------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      |++++++|-.                          ...+.+++.|+  .+|++|.+++.
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~  145 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASI  145 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEech
Confidence            9999999821                          12345555553  36899999876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.41  E-value=0.0024  Score=55.02  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcC-Ch--HHHHHHHHHHHCCCeEEEEeCCchHHH---HHHHhcCCCEEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GG--LGHMAVKFGKAFGLNVTVLSTSTSKKE---EALSLLGADKFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~--~G~~a~~~a~~~g~~v~~~~~~~~~~~---~~~~~~g~~~v~--~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |.  +|.+.++.+...|++|++++++++..+   .+.++.+....+  |..+.+.++++       .+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46789999987 66  999999999999999999999864332   333344532332  44455444332       26


Q ss_pred             CccEEEEcCCCch-----------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGDH-----------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|...                             ..+.+++.++++|+++.++..
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~  171 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY  171 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence            8999999998421                             234455667778999999876

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.40  E-value=0.0012  Score=56.23  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C---CC-EE--EeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G---AD-KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g---~~-~v--~~~~~~~~~~~~-------~  242 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   .   .. ..  .|..+.+.+.++       .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            4678999988 99999999999999999999999988777665554   2   11 12  244455444433       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|++++++|.
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            589999999884

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.40  E-value=0.0007  Score=57.10  Aligned_cols=75  Identities=21%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... .  .|..+.+.+.++       .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5688999998 899999999999999999999999888877766665322 2  244455444332       2589999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      ++++|.
T Consensus        84 v~nAg~   89 (254)
T 1hdc_A           84 VNNAGI   89 (254)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999884

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.40  E-value=0.0023  Score=55.28  Aligned_cols=99  Identities=23%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchHHHH---HHHhcCCCEEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSKKEE---ALSLLGADKFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~~~~---~~~~~g~~~v~--~~~~~~~~~~~-------~~  243 (299)
                      -.++++||.|+ |  ++|...++.+...|++|++++++++..+.   +.++.+....+  |..+.+.++++       .+
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999987 5  99999999999999999999998754333   33344533333  44455444433       26


Q ss_pred             CccEEEEcCCCch-----------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGDH-----------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|...                             ..+.++..++.+|+++.++..
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~  170 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY  170 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence            8999999998421                             123344566778999999776

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.40  E-value=0.002  Score=54.54  Aligned_cols=75  Identities=20%  Similarity=0.206  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... +  .|..+.+.+.++       .+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999998 89999999999999999999999987776654443   4222 2  244455444332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus        86 d~lv~nAg~   94 (262)
T 1zem_A           86 DFLFNNAGY   94 (262)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.39  E-value=0.002  Score=53.31  Aligned_cols=75  Identities=12%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++.-..+  |..+.+.+.++       .+++|+++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3578999987 99999999999999999999999988877775665422222  44454444332       25899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+.|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99883

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.39  E-value=0.0022  Score=54.51  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--C-EEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--D-KFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++.  . .++  |..+.+.+.++       .+++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5688999998 9999999999999999999999988776666555542  1 222  44455444333       25899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +++.++|.
T Consensus        95 ~li~~Ag~  102 (278)
T 2bgk_A           95 IMFGNVGV  102 (278)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.38  E-value=0.0038  Score=53.67  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHH-H---HHhcCCCEE-E--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEE-A---LSLLGADKF-V--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~-~---~~~~g~~~v-~--~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++... .   .++.+.... +  |..+.+.+.++       .+
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999998 899999999999999999999988764322 2   233443322 2  44455444332       26


Q ss_pred             CccEEEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|..                          ...+.+++.++.+|+++.++..
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            899999998731                          1244556677788999999876

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.38  E-value=0.0014  Score=55.27  Aligned_cols=75  Identities=21%  Similarity=0.215  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc----CCCE-EE--eCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEALSLL----GADK-FV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~~~~----g~~~-v~--~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++ .+.+.+++    +... .+  |..+.+.+.++       .+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4678999987 899999999999999999999998876 65554433    4322 22  44454444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        83 ~iD~lv~~Ag~   93 (260)
T 1x1t_A           83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999883

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.38  E-value=0.0017  Score=54.96  Aligned_cols=99  Identities=9%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcC-Ch--HHHHHHHHHHHCCCeEEEEeCCchHHHH---HHHhcCC--CEEE--eCCCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-GG--LGHMAVKFGKAFGLNVTVLSTSTSKKEE---ALSLLGA--DKFV--VSSDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~--~G~~a~~~a~~~g~~v~~~~~~~~~~~~---~~~~~g~--~~v~--~~~~~~~~~~~-------  241 (299)
                      -+++++||.|+ |.  +|...++.+...|++|+++++++...+.   +.++++.  -.++  |..+.+.++++       
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            35789999987 66  9999999999999999999988654333   3334443  1222  33444433332       


Q ss_pred             cCCccEEEEcCCCch-----------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          242 GKSLDFIIDTASGDH-----------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+++|+++.++|...                             ..+.++..++++|+++.++..
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence            268999999987421                             234455667778999999876

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.38  E-value=0.0028  Score=53.99  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHH---hcCCCEE---EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEALS---LLGADKF---VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~~---~~g~~~v---~~~~~~~~~~~~-------~~  243 (299)
                      -.++++||.|+ +++|.+.++.+...|++|+++++.. ++.+.+.+   +.+....   .|..+.+.++++       .+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46789999998 8999999999999999999986554 44443332   3353322   244455444332       25


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|..                         ...+.+.+.++.+|+++.++..
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            899999999841                         1245566677789999999775

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.36  E-value=0.00097  Score=57.08  Aligned_cols=99  Identities=14%  Similarity=0.147  Sum_probs=71.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ |++|.+.++.+...|++|+++++++++.+++.++++....   .|..+.+.+.++       .+++|+
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45789999998 8999999999999999999999999888887677664322   244455444332       258999


Q ss_pred             EEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          248 IIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      +++++|..                         ...+.+++.++.  +|+++.++..
T Consensus       105 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~  161 (277)
T 4dqx_A          105 LVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSY  161 (277)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCG
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECch
Confidence            99999831                         013344555544  4799998776

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.35  E-value=0.00062  Score=58.04  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... .  .|..+.+.+.++       .+++|+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999988 899999999999999999999999998888777776322 2  244455444433       258999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++++.|.
T Consensus        89 lv~nAg~   95 (271)
T 3tzq_B           89 VDNNAAH   95 (271)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.35  E-value=0.0012  Score=56.51  Aligned_cols=93  Identities=14%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC--CEEEeCCCHHHHHHhc-CCccEEEEcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA--DKFVVSSDLEQMKALG-KSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~-~~~d~v~d~~g~  254 (299)
                      -++++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++.  -.+....+      +. ..+|+|+++++.
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~------l~~~~~DivInaTp~  191 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA------LEGQSFDIVVNATSA  191 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG------GTTCCCSEEEECSSG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH------hcccCCCEEEECCCC
Confidence            468999999999999999999999996 999999999998888777764  22332222      22 679999999874


Q ss_pred             chhH---HHHHHhcccCcEEEEEcCC
Q 022313          255 DHPF---DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 ~~~~---~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...-   ......++++..++++-..
T Consensus       192 gm~~~~~~i~~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          192 SLTADLPPLPADVLGEAALAYELAYG  217 (272)
T ss_dssp             GGGTCCCCCCGGGGTTCSEEEESSCS
T ss_pred             CCCCCCCCCCHHHhCcCCEEEEeecC
Confidence            3200   0012467777777776443

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.35  E-value=0.001  Score=56.06  Aligned_cols=75  Identities=19%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      .++++||.|+ +++|...++.+...|++|+++++++++.+.+.++++....   .|..+.+.+.++       .+++|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5789999998 8999999999999999999999999998888777764322   244444444332       2589999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.++|.
T Consensus        88 i~~Ag~   93 (261)
T 3n74_A           88 VNNAGI   93 (261)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999883

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.35  E-value=0.00098  Score=56.26  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++... +  .|..+.+.+.++       .+++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            5789999998 999999999999999999999999888777766666332 2  244455444433       2589999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +.++|.
T Consensus        91 i~~Ag~   96 (265)
T 2o23_A           91 VNCAGI   96 (265)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.35  E-value=0.00096  Score=59.53  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=73.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      -+|+|+|+|.+|..+++.+.. ...|.+.+++.++.+.+ ++......++..+.+.+.++-++.|+|+++++......-+
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~-~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~   94 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV-KEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSI   94 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH-TTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH-hccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchHH
Confidence            469999999999998887754 46899999998888777 3443333456667777777778999999999987656667


Q ss_pred             HHhcccCcEEEEEcCC
Q 022313          262 MSLLKVAGVYVLVGFP  277 (299)
Q Consensus       262 ~~~l~~~G~~v~~g~~  277 (299)
                      ..|++.+-.++++...
T Consensus        95 ~~~~~~g~~yvD~s~~  110 (365)
T 3abi_A           95 KAAIKSKVDMVDVSFM  110 (365)
T ss_dssp             HHHHHHTCEEEECCCC
T ss_pred             HHHHhcCcceEeeecc
Confidence            7888888889887644

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.34  E-value=0.00089  Score=57.57  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=72.4

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++....--.|++++|+|.| .+|..+++++...|++|++..+....++                   
T Consensus       143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------  203 (301)
T 1a4i_A          143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------  203 (301)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------
T ss_pred             CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------
Confidence            35666666666667666544689999999997 6899999999999999998865433332                   


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        +..+.+|+||.++|.+..+.  .++++++..++++|..
T Consensus       204 --~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          204 --EEVNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             --HHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCB
T ss_pred             --HHhccCCEEEECCCCcccCC--HHHcCCCcEEEEccCC
Confidence              23367899999999875322  3458899999999976

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.34  E-value=0.0018  Score=54.20  Aligned_cols=75  Identities=23%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++ ++++.+.+.+++   +... .  .|..+.+.+.++       .++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999988 99999999999999999999998 666655543332   4322 2  244455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 2uvd_A           83 VDILVNNAGV   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.34  E-value=0.0017  Score=54.82  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=65.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHH---hcCCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALS---LLGAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~---~~g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ +++|.+.++.+...|++|+++ .++++..+...+   +.+.. ..+  |..+.+.++++       .++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999998 899999999999999999998 555555444333   33422 222  44455444332       258


Q ss_pred             ccEEEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++++.|..                          ...+.+++.++++|+++.++..
T Consensus        87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  145 (259)
T 3edm_A           87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQ  145 (259)
T ss_dssp             EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCH
Confidence            99999998742                          1233444566668899998765

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.33  E-value=0.0014  Score=57.21  Aligned_cols=74  Identities=20%  Similarity=0.216  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC--C-EE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA--D-KF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v--~~~~~~~~~~~~-------~~  243 (299)
                      .++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++   +.  . .+  .|..+.+.+.++       .+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            5789999998 89999999999999999999999988877664443   21  1 12  244455444332       26


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      ++|+++.++|
T Consensus        87 ~id~lv~nAg   96 (319)
T 3ioy_A           87 PVSILCNNAG   96 (319)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999999998

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.33  E-value=0.0033  Score=53.74  Aligned_cols=98  Identities=21%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHH---HhcCCCE-EE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEAL---SLLGADK-FV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~---~~~g~~~-v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++ .+.+.   ++.+... .+  |..+.+.+.++       .++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  107 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK  107 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999988 899999999999999999999988654 22221   3345332 22  44444443332       258


Q ss_pred             ccEEEEcCCCch-------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGDH-------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++++.|...                         ..+.+++.++.+|+++.++..
T Consensus       108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  165 (283)
T 1g0o_A          108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  165 (283)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEech
Confidence            999999998421                         234556666677999999876

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.33  E-value=0.00036  Score=58.09  Aligned_cols=96  Identities=10%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      -++|||.|+ |.+|...++.+...| ++|++++|++++.+.+. .-+... ..|..+.+.+.++-.++|+||.+.+... 
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-cCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            367999997 999999999999999 79999999987654331 112222 1255566777776678999999998754 


Q ss_pred             --hHHHHHHhcccC--cEEEEEcCC
Q 022313          257 --PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 --~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                        ..+.+++.++..  ++++.++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecc
Confidence              234455555544  589988775

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.32  E-value=0.00088  Score=57.63  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHhc---CCccEEEEc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKALG---KSLDFIIDT  251 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~~---~~~d~v~d~  251 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++.+.+.++++... +  .|..+.+.++++.   +++|+++++
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~n   93 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINN   93 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEEC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            46789999988 999999999999999999999999998888876665322 1  2444555555442   578999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      +|.
T Consensus        94 Ag~   96 (291)
T 3rd5_A           94 AGI   96 (291)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            983

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.32  E-value=0.00085  Score=55.90  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=56.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      ++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... .  .|..+.+.++++       .+++|+++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            578999998 899999999999999999999999988887766664321 1  244455444332       26899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      +++|.
T Consensus        83 nnAg~   87 (235)
T 3l6e_A           83 HCAGT   87 (235)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            99884

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.30  E-value=0.0031  Score=53.58  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      -.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. .++  |..+.+.+.++       .++
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            35688999998 99999999999999999999999987766554333   422 222  44444444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus       109 iD~li~~Ag~  118 (272)
T 1yb1_A          109 VSILVNNAGV  118 (272)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCCc
Confidence            9999999984

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.30  E-value=0.0014  Score=56.14  Aligned_cols=75  Identities=25%  Similarity=0.201  Sum_probs=57.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      .++++||.|+ +++|.+.++.+...|++|++++++.++.+.+.++++....   .|..+.+.+.++       .+++|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5789999998 8999999999999999999999999988887667764322   244444443332       2689999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      ++++|.
T Consensus        84 vnnAg~   89 (281)
T 3zv4_A           84 IPNAGI   89 (281)
T ss_dssp             ECCCCC
T ss_pred             EECCCc
Confidence            999984

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.29  E-value=0.00059  Score=57.34  Aligned_cols=76  Identities=24%  Similarity=0.275  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-E--EEeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-K--FVVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ +++|...++.+...|++|+++++++++.+.+.++++.. .  ..|..+.+.++++       .+++|+
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36789999987 89999999999999999999999988887776665532 1  2345555544432       258999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++++.|.
T Consensus        87 lv~nAg~   93 (248)
T 3op4_A           87 LVNNAGI   93 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999983

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.28  E-value=0.0015  Score=55.53  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCCC--E-EEeCCCHHHHHHh-------cC--
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEALSLLGAD--K-FVVSSDLEQMKAL-------GK--  243 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~~~~g~~--~-v~~~~~~~~~~~~-------~~--  243 (299)
                      +++++||.|+   |++|...++.+...|++|+++++++++ .+.+.++++..  . ..|..+.+.++++       .+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999984   799999999999999999999998766 35555555522  1 2244455444332       13  


Q ss_pred             -CccEEEEcCCCch------------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 -SLDFIIDTASGDH------------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 -~~d~v~d~~g~~~------------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       ++|++++++|...                              ..+.+++.++++|+++.++..
T Consensus        86 ~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~  150 (269)
T 2h7i_A           86 NKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFD  150 (269)
T ss_dssp             CCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             CCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCc
Confidence             8999999987321                              123344555667899988765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.28  E-value=0.0017  Score=55.94  Aligned_cols=76  Identities=24%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-C-EE--EeCCCH-HHHHHh-------c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-D-KF--VVSSDL-EQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~-~v--~~~~~~-~~~~~~-------~  242 (299)
                      .+++++||.|+ |++|...++.+...|++|++++|+.++.+.+.+++   +. . .+  .|..+. +.++.+       .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            45788999998 89999999999999999999999988776654443   21 1 12  244443 433332       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|++++++|.
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            689999999984

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.27  E-value=0.0014  Score=55.89  Aligned_cols=95  Identities=21%  Similarity=0.219  Sum_probs=72.4

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .++|...++...++....--.|++++|+|.| .+|..++.++...|++|++..+....++                    
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~--------------------  198 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS--------------------  198 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH--------------------
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH--------------------
Confidence            4666666667777766554699999999985 5899999999999999999876543332                    


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       +..+.+|+|+.++|.+..+  -.++++++..++++|..
T Consensus       199 -~~~~~ADIVI~Avg~p~~I--~~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          199 -LYTRQADLIIVAAGCVNLL--RSDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             -HHHTTCSEEEECSSCTTCB--CGGGSCTTEEEEECCCE
T ss_pred             -HHhhcCCEEEECCCCCCcC--CHHHcCCCeEEEEeccC
Confidence             2336789999999977533  23678999999999876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.27  E-value=0.0018  Score=52.41  Aligned_cols=99  Identities=19%  Similarity=0.109  Sum_probs=69.1

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHh---cCCC--EEEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSL---LGAD--KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++++||-+|+|. |..+..+++... .+|++++.+++..+.+++.   .+.+  .++..+-.+.... ...+|+|+.
T Consensus        37 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~  114 (204)
T 3e05_A           37 RLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD-LPDPDRVFI  114 (204)
T ss_dssp             TCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT-SCCCSEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc-CCCCCEEEE
Confidence            348899999999985 888888888863 6999999999888777443   2332  2332222111111 157999998


Q ss_pred             cCCC---chhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASG---DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~---~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....   ...++.+.+.|+++|+++.....
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          115 GGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             SCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            7652   33578888999999999987554

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.27  E-value=0.00079  Score=56.81  Aligned_cols=76  Identities=21%  Similarity=0.210  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~-------~~~~d~  247 (299)
                      -+++++||.|+ +++|.+.++.+...|++|+++++++++.+...++++.. .++  |..+.+.+.++       .+++|+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999998 89999999999999999999999988887776666532 222  44454444332       258999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      +++++|.
T Consensus        85 lv~nAg~   91 (257)
T 3tpc_A           85 LVNCAGT   91 (257)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.27  E-value=0.0008  Score=56.37  Aligned_cols=76  Identities=18%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh---cCCccEEEEc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL---GKSLDFIIDT  251 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~---~~~~d~v~d~  251 (299)
                      .+++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++.....   .+..+.+.+.++   .+++|+++.+
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~   91 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCN   91 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            68899999988 8999999999999999999999999888887666653322   234444444443   2579999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      +|.
T Consensus        92 Ag~   94 (249)
T 3f9i_A           92 AGI   94 (249)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            983

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.27  E-value=0.0026  Score=53.59  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-----------CCEEE--eCCCHHHHHHh----
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-----------ADKFV--VSSDLEQMKAL----  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-----------~~~v~--~~~~~~~~~~~----  241 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++.           .-.++  |..+.+.+.++    
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            5688999998 999999999999999999999999888776654442           11222  44444444332    


Q ss_pred             ---cCCc-cEEEEcCCC
Q 022313          242 ---GKSL-DFIIDTASG  254 (299)
Q Consensus       242 ---~~~~-d~v~d~~g~  254 (299)
                         .+++ |+++.++|.
T Consensus        86 ~~~~g~i~d~vi~~Ag~  102 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAGI  102 (264)
T ss_dssp             HHHHSSCCSEEEECCCC
T ss_pred             HHHhCCCCeEEEECCCc
Confidence               1456 999999884

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.26  E-value=0.0019  Score=54.12  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... +  .|..+.+.+.++       .+++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            5688999988 99999999999999999999999987765543332   4222 2  244454444332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        90 d~vi~~Ag~   98 (255)
T 1fmc_A           90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.26  E-value=0.0051  Score=53.00  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch--HHHHH---HHhcCCCEEE---eCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS--KKEEA---LSLLGADKFV---VSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~--~~~~~---~~~~g~~~v~---~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ +++|...++.+...|++|++++++.+  ..+.+   .++.+....+   |..+.+.++++       .+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6789999998 89999999999999999999988632  22222   2344533322   34444443332       26


Q ss_pred             CccEEEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|+++++.|..                          ...+.++..++++|+++.++..
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence            899999998841                          1234455677788999999876

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.26  E-value=0.0015  Score=55.15  Aligned_cols=75  Identities=20%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++    +... .  .|..+.+.+.++       .++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999998 99999999999999999999999987776654443    4322 2  244455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        86 id~lv~~Ag~   95 (263)
T 3ai3_A           86 ADILVNNAGT   95 (263)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.25  E-value=0.0012  Score=55.87  Aligned_cols=75  Identities=21%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EE--EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++... ..  .|..+.+.+.++       .+++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5688999998 89999999999999999999999988877765555422 12  244455444333       2589999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      ++++|.
T Consensus        86 v~~Ag~   91 (260)
T 1nff_A           86 VNNAGI   91 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999883

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.25  E-value=0.0017  Score=55.29  Aligned_cols=87  Identities=21%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCc-----
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGD-----  255 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~-----  255 (299)
                      +++++|+|+|+.|.+++..+...|.+|+++.|+.++.+.+. +++.. .....+      +. .+|+|+++++..     
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~-~~~~~~------l~-~~DiVInaTp~Gm~~~~  188 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCD-CFMEPP------KS-AFDLIINATSASLHNEL  188 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCE-EESSCC------SS-CCSEEEECCTTCCCCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCe-EecHHH------hc-cCCEEEEcccCCCCCCC
Confidence            88999999999999999999999999999999999998886 77743 333322      22 799999988743     


Q ss_pred             h-hHHHHHHhcccCcEEEEEcC
Q 022313          256 H-PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       256 ~-~~~~~~~~l~~~G~~v~~g~  276 (299)
                      . ........++++..++++-.
T Consensus       189 ~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          189 PLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             SSCHHHHHHHHHHCSEEEESCC
T ss_pred             CCChHHHHhhCCCCCEEEEeCC
Confidence            1 12222336778888877743

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.25  E-value=0.0016  Score=55.38  Aligned_cols=75  Identities=23%  Similarity=0.238  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++.....+  |..+.+.+.++       .+++|+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999998 89999999999999999999999988877775565432222  44455444332       25899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      ++.|.
T Consensus        88 ~nAg~   92 (270)
T 1yde_A           88 NNAGH   92 (270)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99874

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.25  E-value=0.0025  Score=53.00  Aligned_cols=74  Identities=20%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhc---CCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALG---KSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~---~~~d~v~d~~g  253 (299)
                      +++++||.|+ |.+|...++.+...|++|+++++++++.+.+.++....+++  |..+.+.+.++-   +++|+++.++|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            5688999998 99999999999999999999999988777665554322333  444555555542   46899999998

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.24  E-value=0.0017  Score=56.09  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---C-EE--EeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---D-KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~-~v--~~~~~~~~~~~~-------~  242 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.   . .+  .|..+.+.+.++       .
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            5688999988 89999999999999999999999988776654433   32   2 12  244455444332       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|++++++|.
T Consensus       105 g~iD~lvnnAG~  116 (297)
T 1xhl_A          105 GKIDILVNNAGA  116 (297)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            589999999883

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.24  E-value=0.0015  Score=56.17  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=72.6

Q ss_pred             ccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHH
Q 022313          160 PLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQM  238 (299)
Q Consensus       160 ~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  238 (299)
                      .++|...++...++....--.|++++|+|.| .+|..++.++...|++|++..+....++                   +
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~-------------------l  204 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED-------------------M  204 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------H
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------h
Confidence            4677767777777766554699999999985 5899999999999999999887443332                   0


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+.+|+|+.++|.+..+.  .+.++++..++++|..
T Consensus       205 ~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          205 IDYLRTADIVIAAMGQPGYVK--GEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHHHTCSEEEECSCCTTCBC--GGGSCTTCEEEECCCE
T ss_pred             hhhhccCCEEEECCCCCCCCc--HHhcCCCcEEEEEecc
Confidence            123356899999999875332  2568999999999876

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.24  E-value=0.0016  Score=55.27  Aligned_cols=76  Identities=28%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++    +... .  .|..+.+.+.++       .+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999998 89999999999999999999999988776654443    5332 2  244455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        99 ~iD~lvnnAg~  109 (267)
T 1vl8_A           99 KLDTVVNAAGI  109 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999884

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0011  Score=61.18  Aligned_cols=96  Identities=16%  Similarity=0.110  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      ++++|+|+|+|.+|..++..+... +.+|++++|+.++.+.+.++.+... .++..+.+.+.+.-.++|+|+++++....
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~  101 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH  101 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh
Confidence            457899999999999999988877 6699999999888877754434332 23444555555544689999999986532


Q ss_pred             HHHHHHhcccCcEEEEEc
Q 022313          258 FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g  275 (299)
                      ......+++.+-.+++..
T Consensus       102 ~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A          102 PNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             HHHHHHHHHHTCEEEECS
T ss_pred             HHHHHHHHhcCCEEEEee
Confidence            333445666666666553

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.23  E-value=0.0022  Score=54.83  Aligned_cols=99  Identities=18%  Similarity=0.114  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC------------chHHHHHH---HhcCCCE-E--EeCCCHHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS------------TSKKEEAL---SLLGADK-F--VVSSDLEQMK  239 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~-v--~~~~~~~~~~  239 (299)
                      -+++++||.|+ +++|...++.+...|++|++++++            .++.+.+.   ++.+... .  .|..+.+.+.
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            35789999998 899999999999999999999887            44444332   2334322 2  2444554443


Q ss_pred             Hh-------cCCccEEEEcCCCc-----------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          240 AL-------GKSLDFIIDTASGD-----------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       240 ~~-------~~~~d~v~d~~g~~-----------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++       .+++|++++++|..                       ...+.+++.++.+|+++.++..
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence            32       25899999998842                       1234455566778999998775

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.23  E-value=0.0021  Score=53.68  Aligned_cols=75  Identities=21%  Similarity=0.168  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CCEEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---ADKFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++.   .-.++  |..+.+.+.++       .+++|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            5688999988 999999999999999999999999887776655543   11222  44454444332       25799


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++|.++|.
T Consensus        85 ~li~~Ag~   92 (251)
T 1zk4_A           85 TLVNNAGI   92 (251)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999883

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.22  E-value=0.0011  Score=61.25  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+..++ ...|.. +.      .+.++....|+|+.+++....+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-~~~G~~-~~------~l~ell~~aDiVi~~~~t~~lI  346 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-AMEGYR-VV------TMEYAADKADIFVTATGNYHVI  346 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-HTTTCE-EC------CHHHHTTTCSEEEECSSSSCSB
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-HHcCCE-eC------CHHHHHhcCCEEEECCCccccc
Confidence            688999999999999999999999999999999987765344 244553 21      2445667899999998765433


Q ss_pred             -HHHHHhcccCcEEEEEcCC
Q 022313          259 -DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 -~~~~~~l~~~G~~v~~g~~  277 (299)
                       ...+..|+++..++.+|..
T Consensus       347 ~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          347 NHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CHHHHHHCCTTEEEEECSSS
T ss_pred             CHHHHhhCCCCcEEEEcCCC
Confidence             5688999999999999775

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.22  E-value=0.0027  Score=53.59  Aligned_cols=75  Identities=23%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTS---KKEEALSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+   |++|...++.+...|++|++++++++   ..+++.++.+....+  |..+.+.++++       .++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999986   69999999988888999999999875   344443444532333  44455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        87 iD~lv~~Ag~   96 (261)
T 2wyu_A           87 LDYLVHAIAF   96 (261)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.21  E-value=0.0021  Score=54.20  Aligned_cols=75  Identities=20%  Similarity=0.168  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------c-CC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------G-KS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~-~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|..+.+.+.++       . ++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999998 89999999999999999999999988766554433   4221 1  244455444332       2 67


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        88 id~lv~~Ag~   97 (260)
T 2ae2_A           88 LNILVNNAGI   97 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.21  E-value=0.0032  Score=51.27  Aligned_cols=91  Identities=20%  Similarity=0.232  Sum_probs=64.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCCc-----
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASGD-----  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~~-----  255 (299)
                      +|||+|+ |.+|...++.+...|.+|++++|++++.+.+.  -+.+.+. |..+.+.  +.-.++|+||.++|..     
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~   77 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTL--SDLSDQNVVVDAYGISPDEAE   77 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTTTTT
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhh--hhhcCCCEEEECCcCCccccc
Confidence            5899998 99999999999999999999999988776652  2333221 2222222  3337899999999864     


Q ss_pred             ---hhHHHHHHhcccC--cEEEEEcCC
Q 022313          256 ---HPFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       256 ---~~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                         .....+++.++..  ++++.++..
T Consensus        78 ~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           78 KHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             SHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             hHHHHHHHHHHHHHhcCCceEEEEecc
Confidence               1235566666654  688888654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.21  E-value=0.0017  Score=55.38  Aligned_cols=96  Identities=17%  Similarity=0.075  Sum_probs=72.5

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..++|...++...++....--.|++++|+|.| .+|..++.++...|++|++..+....++                   
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------  199 (286)
T 4a5o_A          139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------  199 (286)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------
Confidence            35677777777777766554689999999984 6999999999999999998876433222                   


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        +..+.+|+|+.++|.+..+.  .+.++++..++++|..
T Consensus       200 --~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          200 --DHVSRADLVVVAAGKPGLVK--GEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             --HHHHTCSEEEECCCCTTCBC--GGGSCTTCEEEECCSC
T ss_pred             --HHhccCCEEEECCCCCCCCC--HHHcCCCeEEEEeccc
Confidence              22356899999998775332  3678999999999876

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.21  E-value=0.0021  Score=54.43  Aligned_cols=75  Identities=27%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSL---LGADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++ ++++.+.+.++   .+... +  .|..+.+.+.++       .++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5688999988 99999999999999999999998 66555444332   34332 2  244455444332       158


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus       100 ~d~vi~~Ag~  109 (274)
T 1ja9_A          100 LDFVMSNSGM  109 (274)
T ss_dssp             EEEEECCCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.0046  Score=52.51  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHH---hcCCCEE---EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALS---LLGADKF---VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+ +++|.+.++.+...|++|+++. ++++..+.+.+   ..+....   .|..+.+.+.++       .+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999988 8999999999988999998874 45545444432   3343222   244455444332       26


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|..                         ...+.+++.++.+|+++.++..
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence            899999999831                         1244566677788999999876

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.20  E-value=0.0018  Score=53.90  Aligned_cols=101  Identities=11%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcC----CCEEE-eCCCHHHHHHhcCC
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLG----ADKFV-VSSDLEQMKALGKS  244 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g----~~~v~-~~~~~~~~~~~~~~  244 (299)
                      +.... ++||++||=+|+|+ |..+..+|+..|-  +|++++.+++..+.+.+...    ...+. +..+.+........
T Consensus        70 l~~l~-ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           70 LIELP-VKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CSCCC-CCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred             hhhcC-CCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence            44443 59999999999975 7888888888764  89999999998887755443    22232 12223333333467


Q ss_pred             ccEEEEcCCCch----hHHHHHHhcccCcEEEEE
Q 022313          245 LDFIIDTASGDH----PFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       245 ~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~~  274 (299)
                      +|+||.....+.    .+..+.+.|+|+|+++..
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            999987666543    466677899999998875

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.20  E-value=0.0024  Score=54.37  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------c-CC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------G-KS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~-~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|..+.+.+.++       - ++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999998 89999999999999999999999987766554333   4322 2  244454444332       2 68


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999984

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.20  E-value=0.0039  Score=53.05  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHhcCCCEE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTS---KKEEALSLLGADKF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+   |++|...++.+...|++|++++++++   ..+++.++.+...+  .|..+.+.+.++       .++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   69999999999999999999999875   44444344452222  244455444332       258


Q ss_pred             ccEEEEcCCCch-----------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGDH-----------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|++++++|...                             ..+.+++.++++|+++.++..
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  146 (275)
T 2pd4_A           85 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYL  146 (275)
T ss_dssp             EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred             CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecc
Confidence            999999988421                             113334455557999999875

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.20  E-value=0.0031  Score=52.18  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCE-E--EeCCCHHHHHHhc-------CC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADK-F--VVSSDLEQMKALG-------KS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~-v--~~~~~~~~~~~~~-------~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++    +... +  .|..+.+.+.++.       ++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            3678999988 89999999999999999999999988776654433    4322 2  2455566555542       48


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        81 id~li~~Ag~   90 (235)
T 3l77_A           81 VDVVVANAGL   90 (235)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999884

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.0021  Score=53.96  Aligned_cols=76  Identities=13%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-----C--CCEE--EeCCCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-----G--ADKF--VVSSDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-----g--~~~v--~~~~~~~~~~~~-------  241 (299)
                      ..++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++     +  .-.+  .|..+.+.+.++       
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            35789999998 89999999999999999999999988877664443     2  1122  244455444332       


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      .+++|++++++|.
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2689999999984

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.20  E-value=0.00064  Score=58.49  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=67.8

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC----CE--EEeCCCHHHHHHh
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA----DK--FVVSSDLEQMKAL  241 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~----~~--v~~~~~~~~~~~~  241 (299)
                      ..+++....--++++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++.    ..  ..+.++   +.+.
T Consensus       115 ~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~  191 (283)
T 3jyo_A          115 GRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDV  191 (283)
T ss_dssp             HHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHH
T ss_pred             HHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHH
Confidence            3344443322578899999999999999999999999 799999999888877665541    11  222222   2222


Q ss_pred             cCCccEEEEcCCCchh----HHHHHHhcccCcEEEEEcC
Q 022313          242 GKSLDFIIDTASGDHP----FDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       242 ~~~~d~v~d~~g~~~~----~~~~~~~l~~~G~~v~~g~  276 (299)
                      -..+|+|++++.-...    .......++++..++++-.
T Consensus       192 l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY  230 (283)
T 3jyo_A          192 IAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVY  230 (283)
T ss_dssp             HHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCC
T ss_pred             HhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecC
Confidence            3468999999863210    0112346677776666633

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.19  E-value=0.0014  Score=56.28  Aligned_cols=103  Identities=19%  Similarity=0.175  Sum_probs=69.1

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC---CEEEeCCCHHHHHHhcCC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA---DKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~  244 (299)
                      ..+++....--++++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++.   -.+....      ++..+
T Consensus       114 ~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~------~l~~~  187 (281)
T 3o8q_A          114 VQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE------QLKQS  187 (281)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG------GCCSC
T ss_pred             HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH------HhcCC
Confidence            3345444332478999999999999999999999997 999999999988887776653   1232222      23368


Q ss_pred             ccEEEEcCCCchhHHH---HHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGDHPFDA---YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~---~~~~l~~~G~~v~~g~~  277 (299)
                      +|+|+++++....-..   -...++++..++++-..
T Consensus       188 aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          188 YDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             EEEEEECSCCCC----CSCCGGGEEEEEEEEESCCC
T ss_pred             CCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCC
Confidence            9999999876431110   12456666666666433

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.19  E-value=0.0033  Score=53.65  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-EE--eCCCHHHHHHh------cCCc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-FV--VSSDLEQMKAL------GKSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v~--~~~~~~~~~~~------~~~~  245 (299)
                      -.++++||.|+ +++|.+.++.+...|++|+++++++++.+.+.+++   +... .+  |..+.+.+.++      .+++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            46789999987 89999999999999999999999987766554443   4322 22  33333222221      1689


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus       111 D~lvnnAg~  119 (275)
T 4imr_A          111 DILVINASA  119 (275)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.19  E-value=0.0016  Score=54.93  Aligned_cols=74  Identities=18%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---AD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++.   .. ..  .|..+.+.+.++       .+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999987 899999999999999999999999988877755543   22 12  244455444332       2689


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |++++++|
T Consensus        85 d~lv~nAg   92 (257)
T 3imf_A           85 DILINNAA   92 (257)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.19  E-value=0.0025  Score=53.92  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTST---SKKEEALSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~---~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+   |++|...++.+...|++|+++++++   +..+++.++.+...++  |..+.+.+.++       .++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999985   6899999999999999999999887   3344443344432333  44455444432       247


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        88 iD~lv~~Ag~   97 (265)
T 1qsg_A           88 FDGFVHSIGF   97 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.19  E-value=0.0015  Score=53.10  Aligned_cols=94  Identities=20%  Similarity=0.142  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC--EEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD--KFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ++++++||-+|+|. |..+..+++. +.+|+.++.+++..+.+++.+   +..  .++..+-.+.. ...+.||+|+...
T Consensus        75 ~~~~~~vLdiG~G~-G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~  151 (210)
T 3lbf_A           75 LTPQSRVLEIGTGS-GYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTA  151 (210)
T ss_dssp             CCTTCEEEEECCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESS
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEcc
Confidence            48899999999984 7788888887 789999999998887765433   432  23322221111 1136899999876


Q ss_pred             CCchhHHHHHHhcccCcEEEEE
Q 022313          253 SGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       253 g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      .-......+.+.|+++|+++..
T Consensus       152 ~~~~~~~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          152 APPEIPTALMTQLDEGGILVLP  173 (210)
T ss_dssp             BCSSCCTHHHHTEEEEEEEEEE
T ss_pred             chhhhhHHHHHhcccCcEEEEE
Confidence            6655566789999999998875

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.19  E-value=0.0039  Score=53.36  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++.+++++.+.+.+++   +... .  .|..+.+.+.++       .+++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4688999998 99999999999889999999998877766554333   4322 2  244455444432       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++|.++|.
T Consensus       123 d~li~~Ag~  131 (285)
T 2c07_A          123 DILVNNAGI  131 (285)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.18  E-value=0.0015  Score=52.64  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .+|+|.|+ |.+|...++.+...|.+|+++++++++.... ..-+...+ .+..+.+.+.+.-+++|+||.+++...   
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~   82 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS   82 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCC
Confidence            68999998 9999999999999999999999987654322 01122222 244556666666678999999998532   


Q ss_pred             -------hHHHHHHhccc--CcEEEEEcCC
Q 022313          257 -------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       257 -------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                             ....+++.++.  -++++.++..
T Consensus        83 ~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           83 PTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence                   13334444433  2588888665

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.18  E-value=0.0017  Score=55.06  Aligned_cols=75  Identities=17%  Similarity=0.084  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++++||.|+ |++|.+.++.+...|++|+++++++++.....++.+...+ .|..+.+.+.++       .+++|++++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~  105 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVH  105 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            5678999987 8999999999999999999999998776554456664332 244455444332       268999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus       106 nAg~  109 (260)
T 3gem_A          106 NASE  109 (260)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9983

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.18  E-value=0.0014  Score=53.53  Aligned_cols=97  Identities=24%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---CCC--EEEeCCCHHHHHHhcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---GAD--KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g~~--~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .++++++||.+|+| .|..+..+++..+  .+|+.++.+++..+.+.+.+   +.+  .+...+-..... ..+.||+|+
T Consensus        74 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~  151 (215)
T 2yxe_A           74 DLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIY  151 (215)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEE
Confidence            34889999999998 4888888998876  79999999988877764432   322  222222111111 136799999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEc
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ....-......+.+.|+++|+++..-
T Consensus       152 ~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          152 TTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             ESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            87776555678899999999988763

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.17  E-value=0.0021  Score=54.46  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-----CCCE-E--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-----GADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++     +... .  .|..+.+.+.++       .+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5788999998 89999999999999999999999987766554333     3222 2  244455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        92 ~id~lv~nAg~  102 (267)
T 1iy8_A           92 RIDGFFNNAGI  102 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999873

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.17  E-value=0.0017  Score=54.65  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHhc------CCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKALG------KSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~~------~~~d  246 (299)
                      +++++||.|+ +++|.+.++.+...|++|+++++++++.+.+.+++   +... +  .|..+.+.+.++.      +++|
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id   85 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLE   85 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCce
Confidence            5789999998 89999999999999999999999988877665444   4221 2  2444544433321      6899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++++++|.
T Consensus        86 ~lv~nAg~   93 (252)
T 3h7a_A           86 VTIFNVGA   93 (252)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.17  E-value=0.0022  Score=53.73  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=55.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. ..  .|..+.+.+.++       .+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999998 89999999999999999999999988776654443   432 22  244455444332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus        86 d~lv~nAg~   94 (247)
T 2jah_A           86 DILVNNAGI   94 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.17  E-value=0.002  Score=54.99  Aligned_cols=75  Identities=20%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|..+.+.+.++       .+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999998 99999999999999999999999987766554433   4322 2  244454444332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus       101 D~lv~~Ag~  109 (277)
T 2rhc_B          101 DVLVNNAGR  109 (277)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.0018  Score=55.00  Aligned_cols=75  Identities=16%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      .++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++   +....   .|..+.+.+.++       .+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999988 89999999999999999999999988877665444   43221   244455444332       2689


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus        83 D~lVnnAG~   91 (264)
T 3tfo_A           83 DVLVNNAGV   91 (264)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.17  E-value=0.002  Score=54.05  Aligned_cols=75  Identities=25%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. .+  .|..+.+.+.++       .+++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999998 99999999999999999999999988877665443   322 12  244455444333       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|-
T Consensus        88 d~li~~Ag~   96 (253)
T 3qiv_A           88 DYLVNNAAI   96 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999885

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.17  E-value=0.0013  Score=53.87  Aligned_cols=92  Identities=13%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCC-HHHHHHhcCCccEEEEcCCCch---
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSD-LEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      +|||.|+ |.+|...++.+...|++|++++|++++.+.+   -+.+.+ .|..+ .+.+.+.-+++|+||.+++...   
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~   78 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSL   78 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCc
Confidence            6899997 9999999999999999999999997654322   122221 24556 6677777789999999998531   


Q ss_pred             ------hHHHHHHhcccC--cEEEEEcCC
Q 022313          257 ------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 ------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                            ....+++.++..  ++++.++..
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS~  107 (219)
T 3dqp_A           79 LKVDLYGAVKLMQAAEKAEVKRFILLSTI  107 (219)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             EeEeHHHHHHHHHHHHHhCCCEEEEECcc
Confidence                  133344444443  488888776

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.17  E-value=0.0031  Score=53.02  Aligned_cols=74  Identities=23%  Similarity=0.245  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhcCCCEE-E--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK--KEEALSLLGADKF-V--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~--~~~~~~~~g~~~v-~--~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++  .+++ ++.+.... +  |..+.+.+.++       .+++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEI-ARHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678999988 999999999999999999999988752  1222 23343222 2  44445444333       15899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++++++|.
T Consensus        82 ~lv~~Ag~   89 (255)
T 2q2v_A           82 ILVNNAGI   89 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999883

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.16  E-value=0.003  Score=53.07  Aligned_cols=75  Identities=21%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhc---CCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLL---GAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~---g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++ ++++.+.+.+++   +.. .++  |..+.+.+.++       .++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999988 99999999999999999999999 666555443332   322 122  44444444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++|.++|.
T Consensus        86 id~li~~Ag~   95 (261)
T 1gee_A           86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.16  E-value=0.0066  Score=51.48  Aligned_cols=99  Identities=20%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHH---HhcCCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEAL---SLLGADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~---~~~g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ +++|.+.++.+...|++|+++++.. +..+.+.   ++.+... .  .|..+.+.+.++       .+
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999987 8999999999999999999977653 3333332   2344332 2  244455444332       25


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|..                         ...+.+++.++++|+++.++..
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            899999998841                         1245566778889999999876

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.16  E-value=0.0013  Score=60.42  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+..++ ...|.. +.      .+.++....|+|+.+.+....+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-~~~g~~-~~------~l~ell~~aDiVi~~~~t~~lI  326 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-VMEGFN-VV------TLDEIVDKGDFFITCTGNVDVI  326 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-HTTTCE-EC------CHHHHTTTCSEEEECCSSSSSB
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-HHcCCE-ec------CHHHHHhcCCEEEECCChhhhc
Confidence            688999999999999999999999999999999988765444 345652 21      2445567899999998765533


Q ss_pred             -HHHHHhcccCcEEEEEcCC
Q 022313          259 -DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 -~~~~~~l~~~G~~v~~g~~  277 (299)
                       ...+..|+++..++.+|..
T Consensus       327 ~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          327 KLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CHHHHTTCCTTCEEEECSST
T ss_pred             CHHHHhhcCCCcEEEEeCCC
Confidence             4678899999999999765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.16  E-value=0.0015  Score=54.18  Aligned_cols=97  Identities=18%  Similarity=0.294  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHh--cCCccEEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKAL--GKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~--~~~~d~v~  249 (299)
                      .++++||-+|+| .|..+..+++.. +.+|+.++.+++..+.+.+.+   |..   .++..+..+.+...  .+.||+|+
T Consensus        53 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           53 AAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             cCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            577899999998 688888899887 579999999988887775443   431   23333322333444  46899998


Q ss_pred             EcCCC---chhHHHHHHhcccCcEEEEEcC
Q 022313          250 DTASG---DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       250 d~~g~---~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      .....   ...++.+.+.|+++|+++..-.
T Consensus       132 ~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          132 IDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             ECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            76653   2346788899999999988643

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.16  E-value=0.002  Score=59.17  Aligned_cols=94  Identities=15%  Similarity=0.072  Sum_probs=63.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      +++|+|+|+|.+|...++.+...|++|++++++.++.+.+.++++....  ++..+.+.+.++-.++|+|+++++.....
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~   82 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA   82 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence            5689999999999999998888899999999998877766545542222  24444555555556899999999864322


Q ss_pred             HHHHHhcccCcEEEEE
Q 022313          259 DAYMSLLKVAGVYVLV  274 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~  274 (299)
                      .....+++++-.+++.
T Consensus        83 ~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           83 TVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             HHHHHHHHHTCEEEES
T ss_pred             HHHHHHHhCCCeEEEe
Confidence            2334455555454443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.15  E-value=0.0017  Score=55.49  Aligned_cols=94  Identities=14%  Similarity=0.037  Sum_probs=67.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCc----
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGD----  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~----  255 (299)
                      +|||.|+ |.+|...++.+... |.+|++++|++++...+ ...+.+.+ .|..+.+.+.+.-.++|+||.+++..    
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~   80 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSF   80 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccch
Confidence            5899998 99999999998877 88999999998765544 23343332 35666777777778999999998853    


Q ss_pred             ---hhHHHHHHhcccC--cEEEEEcCC
Q 022313          256 ---HPFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       256 ---~~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                         .....+++.++..  ++++.++..
T Consensus        81 ~~~~~~~~l~~aa~~~gv~~iv~~Ss~  107 (289)
T 3e48_A           81 KRIPEVENLVYAAKQSGVAHIIFIGYY  107 (289)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence               1234455555554  478877655

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.15  E-value=0.0045  Score=54.76  Aligned_cols=93  Identities=20%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC-------------------HHHHH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD-------------------LEQMK  239 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-------------------~~~~~  239 (299)
                      -+|++|.|.|.|.+|+.+++.++.+|++|++++.+.++ .+..++++++.+ +.++                   .+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            58899999999999999999999999999988877665 444456775432 1110                   11222


Q ss_pred             HhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEc
Q 022313          240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       240 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .+  +.++|++.+.++.+...+.+.|..+|.++.-+
T Consensus       251 ~l--k~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          251 TL--DCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             HC--CCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             hC--CCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            22  46788887777654445677888887766544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.15  E-value=0.00093  Score=56.35  Aligned_cols=90  Identities=24%  Similarity=0.264  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCc-------------------hHHHHHHHhc---C-CCEEE--eC-
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTST-------------------SKKEEALSLL---G-ADKFV--VS-  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~-------------------~~~~~~~~~~---g-~~~v~--~~-  232 (299)
                      ++.+|+|+|+|++|..+++.+...|. ++++++++.                   .+.+.+++++   . ...+.  .. 
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            34789999999999999999999998 888888876                   5555544333   2 12221  11 


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCc
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAG  269 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G  269 (299)
                      -+.+.+.++-.++|+|+++++...+...+.+.....|
T Consensus       110 ~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~  146 (249)
T 1jw9_B          110 LDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAK  146 (249)
T ss_dssp             CCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred             CCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence            1233444444689999999988764333434333333

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.15  E-value=0.00019  Score=62.51  Aligned_cols=118  Identities=15%  Similarity=0.107  Sum_probs=79.0

Q ss_pred             cccchhhHHHHHHhhh---------ccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-
Q 022313          159 APLLCAGITVYTPMMR---------HKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-  227 (299)
Q Consensus       159 a~~~~~~~ta~~al~~---------~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-  227 (299)
                      ..+||...++...++.         ...--.+++++|+|+| .+|..+++++...|++|+++.++..+.....++++.. 
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~  225 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK  225 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc
Confidence            4566666666666666         2322588999999997 5799999999999999999988744433222333321 


Q ss_pred             EEE-eC--CCHHHHHHhcCCccEEEEcCCCchh-HHHHHHhcccCcEEEEEcCCC
Q 022313          228 KFV-VS--SDLEQMKALGKSLDFIIDTASGDHP-FDAYMSLLKVAGVYVLVGFPS  278 (299)
Q Consensus       228 ~v~-~~--~~~~~~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~~  278 (299)
                      +.. ..  .+.+.+.+....+|+||.+++.+.. +..  +.++++..++++|...
T Consensus       226 ~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~--e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          226 HHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPT--EYIKEGAVCINFACTK  278 (320)
T ss_dssp             CEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCT--TTSCTTEEEEECSSSC
T ss_pred             ccccccccccHhHHHHHhccCCEEEECCCCCcceeCH--HHcCCCeEEEEcCCCc
Confidence            100 00  1124555566789999999998752 222  3478888999998874

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.14  E-value=0.0022  Score=52.98  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=55.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC---EEEeCCCHHHHHHh----cCCccEEEEcCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD---KFVVSSDLEQMKAL----GKSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~----~~~~d~v~d~~g  253 (299)
                      +++||.|+ |++|...++.+...|++|+++++++++.+.+.++++..   ...|..+.+.+.++    ...+|+++++.|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            46899988 89999999999999999999999999988887776522   12345555555443    345699999998


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        82 ~   82 (230)
T 3guy_A           82 S   82 (230)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.13  E-value=0.0015  Score=53.82  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC------CeEEEEeCCchHHHHHHHhc---C-------CCEEEeCCCHHHHH-
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG------LNVTVLSTSTSKKEEALSLL---G-------ADKFVVSSDLEQMK-  239 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g------~~v~~~~~~~~~~~~~~~~~---g-------~~~v~~~~~~~~~~-  239 (299)
                      .++++++||-+|+|. |..+..+++..+      .+|+.++.+++..+.+.+.+   +       .-.++..+-.+... 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence            358899999999976 888888888876      59999999988777764432   2       12233322221110 


Q ss_pred             --HhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          240 --ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       240 --~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                        ...+.||+|+....-......+.+.|+++|+++..
T Consensus       156 ~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          156 EKKELGLFDAIHVGASASELPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             HHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEE
T ss_pred             cCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEE
Confidence              12367999998777666678899999999998866

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.13  E-value=0.0023  Score=55.42  Aligned_cols=76  Identities=21%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... +  .|..+.+.+.++       .++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            46789999998 89999999999999999999999988877665443   3222 2  244455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       109 id~lvnnAg~  118 (301)
T 3tjr_A          109 VDVVFSNAGI  118 (301)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999983

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.12  E-value=0.0035  Score=52.63  Aligned_cols=76  Identities=21%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----C-CCEE--EeC--CCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----G-ADKF--VVS--SDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g-~~~v--~~~--~~~~~~~~~-------  241 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++    + ....  .+.  .+.+.++++       
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            46789999988 89999999999999999999999988876654443    2 1122  233  344433332       


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      .+++|++++++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2689999999984

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.12  E-value=0.0023  Score=53.95  Aligned_cols=75  Identities=21%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-----C-CCEE--EeCCCHHHHHHhc------CC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-----G-ADKF--VVSSDLEQMKALG------KS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-----g-~~~v--~~~~~~~~~~~~~------~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++     + .-.+  .|..+.+.+.++-      .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5688999998 89999999999999999999999988776654443     2 1122  2444555444321      13


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        86 id~lv~~Ag~   95 (260)
T 2z1n_A           86 ADILVYSTGG   95 (260)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.12  E-value=0.0022  Score=54.82  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-CEEE--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-DKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +. -..+  |..+.+.++++       .++
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999988 89999999999999999999999988776654443   32 2222  44455544433       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       110 iD~lvnnAg~  119 (276)
T 3r1i_A          110 IDIAVCNAGI  119 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.11  E-value=0.0034  Score=52.85  Aligned_cols=73  Identities=19%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++ +.+.++++. .++  |..+.+.+.++       .+++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4688999998 899999999999999999999999877 555455542 333  44444443332       25899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      +++|.
T Consensus        83 ~~Ag~   87 (256)
T 2d1y_A           83 NNAAI   87 (256)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99883

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.11  E-value=0.0017  Score=54.99  Aligned_cols=76  Identities=29%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C-CC-EEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G-AD-KFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g-~~-~v~--~~~~~~~~~~~-------~~  243 (299)
                      -.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   + .. ..+  |..+.+.++++       .+
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            35789999987 89999999999999999999999988876654443   2 11 222  44455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999983

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.11  E-value=0.0026  Score=54.50  Aligned_cols=76  Identities=24%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CCE-E--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---ADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ +++|.+.++.+...|++|++++++.++.+.+.+++.   ... .  .|..+.+.++++       .++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35789999998 899999999999999999999999888777655542   222 2  244455444332       268


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.10  E-value=0.00064  Score=55.14  Aligned_cols=135  Identities=15%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             cceeeEE-eecceEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEe
Q 022313          134 GYSSYIV-VHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLS  211 (299)
Q Consensus       134 ~~~~~~~-~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~  211 (299)
                      .|.+|.. .+....+.+++.+++..... + ........+...  ++++.+||-+|+|. |..+..+++. +. ++++++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~~l~~~--~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q-TTQLAMLGIERA--MVKPLTVADVGTGS-GILAIAAHKL-GAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-H-HHHHHHHHHHHH--CSSCCEEEEETCTT-SHHHHHHHHT-TCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-c-cHHHHHHHHHHh--ccCCCEEEEECCCC-CHHHHHHHHC-CCCEEEEEE
Confidence            3555655 55667778887776655421 1 111111122211  36889999999876 6777777764 55 999999


Q ss_pred             CCchHHHHHHHh---cCCC--EEEeCCCHHHHHHhcCCccEEEEcCCCch---hHHHHHHhcccCcEEEEEcCC
Q 022313          212 TSTSKKEEALSL---LGAD--KFVVSSDLEQMKALGKSLDFIIDTASGDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       212 ~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+++..+.+++.   .+..  .++..+-.+   ...+.||+|+....-..   .++.+.+.|+++|+++..+..
T Consensus        91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A           91 ISDESMTAAEENAALNGIYDIALQKTSLLA---DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCCEEEESSTTT---TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCceEEEeccccc---cCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            998877776443   2432  333322211   23478999997654332   244556789999999886544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.10  E-value=0.0085  Score=46.13  Aligned_cols=94  Identities=20%  Similarity=0.065  Sum_probs=63.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHhc--CCCEEE-eCCCHHHHHHh-cCCccEEEEcCCCc
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST-SKKEEALSLL--GADKFV-VSSDLEQMKAL-GKSLDFIIDTASGD  255 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~~~~--g~~~v~-~~~~~~~~~~~-~~~~d~v~d~~g~~  255 (299)
                      .++++|+|+|.+|...++.+...|.+|+++++++ ++.+.+.+.+  |...+. +..+.+.+.+. -.++|.|+-+++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            4678999999999999999999999999999974 5554553333  433332 34455666655 47899999999876


Q ss_pred             hh---HHHHHHhcccCcEEEEE
Q 022313          256 HP---FDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       256 ~~---~~~~~~~l~~~G~~v~~  274 (299)
                      ..   .....+.+.+..+++..
T Consensus        83 ~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           83 ADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEE
Confidence            52   22223444444566554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.09  E-value=0.0055  Score=55.56  Aligned_cols=96  Identities=13%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchh
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHP  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~  257 (299)
                      ....|+|+|.|.+|+..++.++..|..|++++.++++.+.+ ++.|...+. +..+.+.+.+.+ ..+|+|+-+++....
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~   81 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT   81 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence            34669999999999999999999999999999999999988 577865443 555667777764 789999999998652


Q ss_pred             H---HHHHHhcccCcEEEEEcC
Q 022313          258 F---DAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       258 ~---~~~~~~l~~~G~~v~~g~  276 (299)
                      .   ....+.+.+.-+++.-..
T Consensus        82 n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           82 NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHhCCCCeEEEEEC
Confidence            2   233455556666665543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.09  E-value=0.0033  Score=53.73  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      .+++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++   +... .  .|..+.+.+.++       .++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999998 89999999999999999999999988777654443   3222 2  244455444332       268


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       102 id~lv~nAg~  111 (279)
T 3sju_A          102 IGILVNSAGR  111 (279)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999984

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.08  E-value=0.0017  Score=56.45  Aligned_cols=90  Identities=21%  Similarity=0.354  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|++++++.+. +.+ ++.|.+..    +   +.++....|+|+.++....  
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~~----~---l~ell~~aDvV~l~~p~~~~t  210 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERA-KEVNGKFV----D---LETLLKESDVVTIHVPLVEST  210 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHTTCEEC----C---HHHHHHHCSEEEECCCCSTTT
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH-hhcCcccc----C---HHHHHhhCCEEEEecCCChHH
Confidence            46789999999999999999999999999999998776 444 56776421    2   2233346899999887432  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+ ...+..+++++.++.++..
T Consensus       211 ~~li~~~~l~~mk~ga~lin~arg  234 (307)
T 1wwk_A          211 YHLINEERLKLMKKTAILINTSRG  234 (307)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             hhhcCHHHHhcCCCCeEEEECCCC
Confidence              12 4577889999999988754

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.08  E-value=0.0019  Score=55.10  Aligned_cols=96  Identities=18%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++....--.|++++|+|.| .+|..+++++...|++|++..+....+++.                 
T Consensus       137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~-----------------  199 (288)
T 1b0a_A          137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH-----------------  199 (288)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH-----------------
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHH-----------------
Confidence            35676666667777766544689999999997 589999999999999999987665444332                 


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                          .+.+|+||.++|.+..+.  .++++++..++++|..
T Consensus       200 ----~~~ADIVI~Avg~p~lI~--~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          200 ----VENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             ----HHHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred             ----hccCCEEEECCCCcCcCC--HHHcCCCcEEEEccCC
Confidence                244789999999875322  2457889999999876

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.08  E-value=0.0029  Score=53.68  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=70.3

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+....++...  -.|++++|+|.| .+|..++.++...|++|++..+....+++.                 
T Consensus       130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~-----------------  190 (276)
T 3ngx_A          130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSM-----------------  190 (276)
T ss_dssp             SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH-----------------
T ss_pred             CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHh-----------------
Confidence            345666677777777666  689999999985 699999999999999999987654333322                 


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                          .+.+|+|+.++|.+..+.  .+.++++..++++|..
T Consensus       191 ----~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          191 ----TRSSKIVVVAVGRPGFLN--REMVTPGSVVIDVGIN  224 (276)
T ss_dssp             ----HHHSSEEEECSSCTTCBC--GGGCCTTCEEEECCCE
T ss_pred             ----hccCCEEEECCCCCcccc--HhhccCCcEEEEeccC
Confidence                244788999888765332  2567889899998865

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.07  E-value=0.0042  Score=52.52  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ +++|...++.+...|++|++++++.++.+.+.+++   +... .  .|..+.+.+.++       .++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999998 89999999999999999999999988777664443   3222 2  244455444332       268


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++++.|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999999864

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.07  E-value=0.008  Score=53.11  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-------HHHH---HHhcCCCEE---EeCCCHHHHHHh---
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-------KEEA---LSLLGADKF---VVSSDLEQMKAL---  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-------~~~~---~~~~g~~~v---~~~~~~~~~~~~---  241 (299)
                      -+++++||.|+ +++|.+.++.+...|++|++++++.++       ++.+   .++.|....   .|..+.+.+.++   
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            46789999998 899999999999999999999998763       2221   134453222   245555544433   


Q ss_pred             ----cCCccEEEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          242 ----GKSLDFIIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       242 ----~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                          .+++|++++++|..                         ...+.++..++.  +|+++.++..
T Consensus       123 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~  189 (346)
T 3kvo_A          123 AIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPP  189 (346)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCH
Confidence                25899999999841                         123344445544  4899999876

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.07  E-value=0.0037  Score=52.48  Aligned_cols=97  Identities=19%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch--HHHHHHHhcCCCEEE---eCCCHHHHHHh--cCCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS--KKEEALSLLGADKFV---VSSDLEQMKAL--GKSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~--~~~~~~~~~g~~~v~---~~~~~~~~~~~--~~~~d~v~d~  251 (299)
                      +|+++||.|+ +++|++.++.+...|++|++++++.+  ..+.+ ++.|.+...   |..+++.+++.  .+++|+++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~-~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNN   86 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDII-AKDGGNASALLIDFADPLAAKDSFTDAGFDILVNN   86 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHH-HHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEEC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHH-HHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            6889999987 89999999999999999999998753  23344 566643322   33333333332  2679999999


Q ss_pred             CCCc-------------------------hhHHHHHHhc-c--cCcEEEEEcCC
Q 022313          252 ASGD-------------------------HPFDAYMSLL-K--VAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~~-------------------------~~~~~~~~~l-~--~~G~~v~~g~~  277 (299)
                      .|..                         .+.+.+++.| +  .+|++|.+++.
T Consensus        87 AGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~  140 (247)
T 4hp8_A           87 AGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL  140 (247)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEech
Confidence            9831                         1244455544 3  35899999876

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0049  Score=52.96  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCC---eEEEEeCCchHHHHHHHhc-----CCCE-E--EeCCCHHHHHHh------
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGL---NVTVLSTSTSKKEEALSLL-----GADK-F--VVSSDLEQMKAL------  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~---~v~~~~~~~~~~~~~~~~~-----g~~~-v--~~~~~~~~~~~~------  241 (299)
                      +++++||.|+ +++|...++.+...|+   +|++++++.++.+.+.+++     +... .  .|..+.+.++++      
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4688999998 8999998887777776   9999999988877765443     2221 1  244444444332      


Q ss_pred             -cCCccEEEEcCCC
Q 022313          242 -GKSLDFIIDTASG  254 (299)
Q Consensus       242 -~~~~d~v~d~~g~  254 (299)
                       .+++|++++++|.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence             1579999999983

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.07  E-value=0.0066  Score=51.90  Aligned_cols=75  Identities=23%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTS---KKEEALSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      .++++||.|+   |++|...++.+...|++|++++++++   ..+.+.++.+...++  |..+.+.+.++       .++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999986   59999999999999999999999875   334443334422222  44455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       100 iD~lv~~Ag~  109 (285)
T 2p91_A          100 LDIIVHSIAY  109 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.07  E-value=0.0018  Score=55.93  Aligned_cols=76  Identities=22%  Similarity=0.148  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC----C-EE--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA----D-KF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~----~-~v--~~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++..    . ..  .|..+.+.+.++       .+
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            36789999988 8999999999999999999999998887766555431    1 12  244455444332       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus       119 ~iD~lvnnAg~  129 (293)
T 3rih_A          119 ALDVVCANAGI  129 (293)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999883

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.07  E-value=0.0074  Score=49.45  Aligned_cols=74  Identities=15%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh-cCCccEEEEcCCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL-GKSLDFIIDTASGDH  256 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  256 (299)
                      +|+|+|+|.+|...++.+...|.+|+++++++++.+.+.++.+...+. +..+.+.+.+. ...+|+++-+++...
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence            488999999999999999999999999999999988875566654333 44456666665 378999999999875

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.06  E-value=0.0032  Score=53.26  Aligned_cols=99  Identities=16%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHhc---CCCE---EEeCCCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS---KKEEALSLL---GADK---FVVSSDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~---~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------  241 (299)
                      -+++++||.|+ +++|...++.+...|++|+++++...   +.+.+.+++   +...   ..|..+.+.++++       
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            36789999988 89999999999999999999876533   333333333   3222   1244455544433       


Q ss_pred             cCCccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          242 GKSLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+++|++++++|..                         ...+.+++.++++|+++.++..
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence            26899999999831                         1234445566778999999776

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.06  E-value=0.0074  Score=51.31  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC------------chHHHHHHH---hcCCCEE---EeCCCHHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS------------TSKKEEALS---LLGADKF---VVSSDLEQMK  239 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~v---~~~~~~~~~~  239 (299)
                      -.++++||.|+ +++|...++.+...|++|++++++            .++.+...+   ..+....   .|..+.+.+.
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            36789999988 899999999999999999999987            444443322   2343222   2444554443


Q ss_pred             Hh-------cCCccEEEEcCCCc---------------------hhHHHHHHhccc---CcEEEEEcCC
Q 022313          240 AL-------GKSLDFIIDTASGD---------------------HPFDAYMSLLKV---AGVYVLVGFP  277 (299)
Q Consensus       240 ~~-------~~~~d~v~d~~g~~---------------------~~~~~~~~~l~~---~G~~v~~g~~  277 (299)
                      ++       .+++|++++++|..                     ...+.+++.+..   +|+++.++..
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence            32       25899999999842                     123334444432   6899998776

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.05  E-value=0.0019  Score=55.35  Aligned_cols=75  Identities=24%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE-E--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF-V--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v-~--~~~~~~~~~~~-------~~~  244 (299)
                      -.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.... +  |..+.+.+.++       .++
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999988 89999999999999999999999988877776555   22222 2  34444444332       258


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|++++++|
T Consensus        86 iD~lvnnAg   94 (280)
T 3tox_A           86 LDTAFNNAG   94 (280)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999998

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.05  E-value=0.0015  Score=53.66  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .+|||.|+ |.+|...++.+...|.+|++++|++++...+.  -+.+.+ .+..+.+.+.+.-.++|+||.+++...   
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~   82 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNP   82 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-----
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCCh
Confidence            57999998 99999999999999999999999976653321  112111 244456666666678999999998641   


Q ss_pred             --------hHHHHHHhcccC--cEEEEEcCC
Q 022313          257 --------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 --------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                              ....+++.++..  .+++.++..
T Consensus        83 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           83 DIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             -CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence                    233344555544  388888765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.04  E-value=0.0037  Score=53.35  Aligned_cols=75  Identities=19%  Similarity=0.127  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ +++|.+.++.+...|++|++++++.++.+...+++    +... .  .|..+.+.+.++       .+
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36789999998 89999999999999999999999987766554443    4322 2  244455444332       26


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      ++|++++++|
T Consensus       105 ~id~lv~nAg  114 (277)
T 4fc7_A          105 RIDILINCAA  114 (277)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            8999999998

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.04  E-value=0.0012  Score=54.53  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC-------CeEEEEeCCchHHHHHHHhc----------CCCEEEeCCCHHHHH
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG-------LNVTVLSTSTSKKEEALSLL----------GADKFVVSSDLEQMK  239 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g-------~~v~~~~~~~~~~~~~~~~~----------g~~~v~~~~~~~~~~  239 (299)
                      .++++.+||-+|+|. |..+..+++..+       .+|+.++.+++..+.+.+.+          ..-.++..+..+...
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  159 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP  159 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC
Confidence            358899999999976 888888888665       49999999988777664332          112233222211111


Q ss_pred             HhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          240 ALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       240 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                       ..+.||+|+....-......+.+.|+++|+++..
T Consensus       160 -~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          160 -PNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             -GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             -cCCCccEEEECCchHHHHHHHHHHhcCCCEEEEE
Confidence             1267999998877666678899999999998865

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.03  E-value=0.0035  Score=52.62  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. .+  .|..+.+.+.++       .+++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999998 99999999999999999999999987665543332   422 22  244455444332       2589


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |+++.++|
T Consensus        92 d~vi~~Ag   99 (260)
T 3awd_A           92 DILVACAG   99 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.03  E-value=0.0019  Score=57.49  Aligned_cols=49  Identities=24%  Similarity=0.294  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD  227 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~  227 (299)
                      -+|++|+|+|.|.+|..+++.+...|++|++++++.++.+.++++++++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE
Confidence            5789999999999999999999999999999999988888776777753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.03  E-value=0.0024  Score=54.55  Aligned_cols=74  Identities=27%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EE--eCCCHHHHHHh------cCCccEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FV--VSSDLEQMKAL------GKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~--~~~~~~~~~~~------~~~~d~v  248 (299)
                      -+++++||.|+ +++|...++.+...|++|++++++.++.+.+.++++... ++  |..+.+.+.++      .++.|++
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            35788999998 899999999999999999999999998888877776432 22  44454444332      1478999


Q ss_pred             EEcC
Q 022313          249 IDTA  252 (299)
Q Consensus       249 ~d~~  252 (299)
                      +.+.
T Consensus       108 v~~a  111 (281)
T 3ppi_A          108 VVAH  111 (281)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            9883

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.02  E-value=0.0041  Score=50.82  Aligned_cols=91  Identities=21%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCCc-----
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASGD-----  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~~-----  255 (299)
                      +|||+|+ |.+|...++.+...|.+|++++|++++...+ ..-+.+.+. |..+.+.  +.-+++|+||.++|..     
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~   78 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-LGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSGR   78 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-TCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSSC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-cCCCceEEecccccccH--hhcccCCEEEECCccCCCcch
Confidence            5899998 9999999999999999999999998877655 222333322 2222223  3347899999999863     


Q ss_pred             -----hhHHHHHHhccc-CcEEEEEcC
Q 022313          256 -----HPFDAYMSLLKV-AGVYVLVGF  276 (299)
Q Consensus       256 -----~~~~~~~~~l~~-~G~~v~~g~  276 (299)
                           .....+++.++. +++++.++.
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           79 GYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             THHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             hhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                 123445555544 468888854

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.02  E-value=0.0017  Score=53.95  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE--EEeCCCHHHHHHhcCCccEEEEc
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK--FVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      .++++++||.+|+| .|..+..+++..+.+|+.++.+++..+.+++.   .|...  ++..+-...+. ...+||+|+..
T Consensus        88 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~  165 (235)
T 1jg1_A           88 NLKPGMNILEVGTG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-PKAPYDVIIVT  165 (235)
T ss_dssp             TCCTTCCEEEECCT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEEC
T ss_pred             CCCCCCEEEEEeCC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCC-CCCCccEEEEC
Confidence            34889999999998 68888899988768999999998877776443   34322  22222111111 12459999987


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEc
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ..-......+.+.|+++|+++..-
T Consensus       166 ~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          166 AGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             SBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHhcCCCcEEEEEE
Confidence            776555678899999999987653

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.01  E-value=0.0017  Score=57.88  Aligned_cols=127  Identities=14%  Similarity=0.156  Sum_probs=83.5

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC----chH----HHHHHHhcCCCEE
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS----TSK----KEEALSLLGADKF  229 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~----~~~----~~~~~~~~g~~~v  229 (299)
                      .+....+.+.+.+++..+.--++.+|+|+|+|..|..+++++...|+ +|++++++    .++    +...++.|..+  
T Consensus       170 GTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~--  247 (388)
T 1vl6_A          170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI--  247 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT--
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHh--
Confidence            34444556666677665532577899999999999999999999999 89999988    544    22222222211  


Q ss_pred             Ee-CCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhh
Q 022313          230 VV-SSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLN  288 (299)
Q Consensus       230 ~~-~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~  288 (299)
                      .+ ......+.+.-+++|++|-+++.....+..++.|+++..++.+..+. ..+.+.+..
T Consensus       248 ~~~~~~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt-~E~~p~~a~  306 (388)
T 1vl6_A          248 TNPERLSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV-PEIDPELAR  306 (388)
T ss_dssp             SCTTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS-CSSCHHHHH
T ss_pred             hhccCchhhHHHHHccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC-CCCCHHHHH
Confidence            01 11122344444678999999885445677788898888777776654 355555544

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.01  E-value=0.0011  Score=55.09  Aligned_cols=97  Identities=18%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      +++++||.|+ |.+|...++.+...|+  +|+++++++++.+... .-+...+ .|..+.+.+.++-.++|+++.++|..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            3578999997 9999999999998999  9999999876543321 1122211 23334444555556899999999864


Q ss_pred             h--------------hHHHHHHhcccC--cEEEEEcCC
Q 022313          256 H--------------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       256 ~--------------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                      .              ....+++.++..  ++++.++..
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~  133 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK  133 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccC
Confidence            2              122333444333  688888766

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.01  E-value=0.003  Score=52.70  Aligned_cols=74  Identities=20%  Similarity=0.104  Sum_probs=54.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCC-EE--EeCCCHHHHHHh-------cCCc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GAD-KF--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++||.|+ |++|...+..+...|++|+++++++++.+.+.+++    +.. .+  .|..+.+.+.++       .+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999998 99999999999999999999999988777665444    321 22  244455444333       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        82 d~li~~Ag~   90 (250)
T 2cfc_A           82 DVLVNNAGI   90 (250)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.01  E-value=0.0025  Score=56.11  Aligned_cols=90  Identities=21%  Similarity=0.242  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|++++++.+. +.+ ++.|++.    .   .+.++....|+|+.++....  
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~---~l~ell~~aDvV~l~~P~t~~t  233 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVS-ASFGVQQ----L---PLEEIWPLCDFITVHTPLLPST  233 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHH-HHTTCEE----C---CHHHHGGGCSEEEECCCCCTTT
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCcee----C---CHHHHHhcCCEEEEecCCCHHH
Confidence            46789999999999999999999999999999988665 334 5677642    1   23345567899999887643  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+ ...+..+++++.++.++..
T Consensus       234 ~~li~~~~l~~mk~gailIN~arg  257 (335)
T 2g76_A          234 TGLLNDNTFAQCKKGVRVVNCARG  257 (335)
T ss_dssp             TTSBCHHHHTTSCTTEEEEECSCT
T ss_pred             HHhhCHHHHhhCCCCcEEEECCCc
Confidence              12 4678899999999988764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.01  E-value=0.0043  Score=51.74  Aligned_cols=75  Identities=21%  Similarity=0.229  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|..+.+.++++       .+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999988 89999999999999999999999988776654433   4322 2  244455444332       2579


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |+++.++|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.00  E-value=0.0049  Score=52.12  Aligned_cols=76  Identities=17%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cCCC--EE--EeCCCHHHHHHh-------c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LGAD--KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g~~--~v--~~~~~~~~~~~~-------~  242 (299)
                      -+++++||.|+ +++|...++.+...|++|++++++.++.+.+.++    .+..  ..  .|..+.+.+.++       .
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35789999987 8999999999999999999999998877665443    3322  22  244455444332       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|+++++.|.
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            689999999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.00  E-value=0.0021  Score=54.77  Aligned_cols=76  Identities=18%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEEE---eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKFV---VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v~---~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +....+   |..+.+.+.++       .++
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            46789999987 89999999999999999999999988776654443   433222   34444444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.00  E-value=0.0034  Score=53.46  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--C-EE--EeCCCHHHHHHh-------cCCccEE
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--D-KF--VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v--~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +++||.|+ |++|...++.+...|++|+++++++++.+.+.+++..  . ..  .|..+.+.+.++       .+++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            78999988 8999999999999999999999998887776555532  1 12  244455554443       1578999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +++.|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.99  E-value=0.0031  Score=53.18  Aligned_cols=75  Identities=19%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +... .  .|..+.+.+.++       .+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999988 99999999999999999999999987766543332   4222 1  244444443332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus        93 D~lv~~Ag~  101 (260)
T 2zat_A           93 DILVSNAAV  101 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.98  E-value=0.0035  Score=55.30  Aligned_cols=77  Identities=19%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHC-CC-eEEEEeCCchHHHHHHHhcCC--CEE--EeCCCHHHHHHhcCCccEEEEc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAF-GL-NVTVLSTSTSKKEEALSLLGA--DKF--VVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~-g~-~v~~~~~~~~~~~~~~~~~g~--~~v--~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      -++++|||.|+ |.+|...++.+... |. +|+++++++.+.+.+.+.+..  -.+  .|..+.+.+.++-.++|+||.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            45689999998 99999999888888 97 999999998877766555431  122  2555667777766789999999


Q ss_pred             CCCc
Q 022313          252 ASGD  255 (299)
Q Consensus       252 ~g~~  255 (299)
                      ++..
T Consensus        99 Aa~~  102 (344)
T 2gn4_A           99 AALK  102 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9853

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.98  E-value=0.0045  Score=51.46  Aligned_cols=96  Identities=22%  Similarity=0.274  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHh---------
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKAL---------  241 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~---------  241 (299)
                      .++++||-+|+| .|..+..+++..  +.+|+.++.+++..+.+++.+   |..   .++..+..+.+.++         
T Consensus        59 ~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           59 SGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            577899999998 488888999987  569999999988877764443   432   23333322333333         


Q ss_pred             ------c-CCccEEEEcCCCc---hhHHHHHHhcccCcEEEEEc
Q 022313          242 ------G-KSLDFIIDTASGD---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       242 ------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                            . +.||+|+......   ..+..+.+.|+++|.++..-
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                  2 6799999876654   34678889999999998764

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.97  E-value=0.0035  Score=52.06  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHh---cCCC-EE-E--eCCCHHHHHHh-------cCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSL---LGAD-KF-V--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~---~g~~-~v-~--~~~~~~~~~~~-------~~~  244 (299)
                      ++++||.|+ |++|...++.+...|++|+++ .+++++.+.+.++   .+.. .. +  |..+.+.+.++       .++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            367899988 999999999999999999998 7887766554333   2422 22 2  44455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus        81 ~d~li~~Ag~   90 (245)
T 2ph3_A           81 LDTLVNNAGI   90 (245)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.97  E-value=0.0025  Score=54.49  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---C-EE--EeCCCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---D-KF--VVSSDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~-~v--~~~~~~~~~~~~-------  241 (299)
                      -.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.   . .+  .|..+.+.+.++       
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35789999988 89999999999999999999999988776654443   32   1 11  244455444332       


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      .+++|++++++|.
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2689999999985

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.97  E-value=0.0025  Score=54.46  Aligned_cols=74  Identities=22%  Similarity=0.260  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--C-EEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--D-KFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++..  . .++  |..+.+.+.++       .+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            5688999998 8999999999999999999999998877665554421  1 111  34444443332       25899


Q ss_pred             EEEEcCC
Q 022313          247 FIIDTAS  253 (299)
Q Consensus       247 ~v~d~~g  253 (299)
                      ++++++|
T Consensus       108 ~lvnnAg  114 (276)
T 2b4q_A          108 ILVNNAG  114 (276)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999998

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.97  E-value=0.0079  Score=52.77  Aligned_cols=75  Identities=17%  Similarity=0.102  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHh------cCCCEE-EeCCCHHHHHHhcCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK----KEEALSL------LGADKF-VVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~----~~~~~~~------~g~~~v-~~~~~~~~~~~~~~~~d~  247 (299)
                      .+.+|||.|+ |.+|...++.+...|.+|+++++....    ...+.+.      -+...+ .|..+.+.+.++-.++|+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            4578999998 999999999999999999999986542    2333111      122222 245566777777779999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ||.+++.
T Consensus       104 Vih~A~~  110 (351)
T 3ruf_A          104 VLHQAAL  110 (351)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999985

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.97  E-value=0.0029  Score=53.29  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++   +... .  .|..+.+.++++       .++
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999988 89999999999889999999999988776654433   4322 2  244455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        90 id~lv~nAg~   99 (256)
T 3gaf_A           90 ITVLVNNAGG   99 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.97  E-value=0.0028  Score=53.91  Aligned_cols=96  Identities=22%  Similarity=0.291  Sum_probs=71.4

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCC-hHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLG-GLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGADKFVVSSDL  235 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g-~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~  235 (299)
                      ..+||...++...++....--.|++++|+|.| .+|..+++++...  +++|++..+....+.                 
T Consensus       136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-----------------  198 (281)
T 2c2x_A          136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-----------------  198 (281)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-----------------
T ss_pred             CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-----------------
Confidence            34566666666666666533689999999997 5799999999999  899999866543332                 


Q ss_pred             HHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          236 EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       236 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                          +..+.+|+||.++|.+..+  -.++++++..++++|..
T Consensus       199 ----~~~~~ADIVI~Avg~p~~I--~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          199 ----ALTRQADIVVAAVGVAHLL--TADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             ----HHHTTCSEEEECSCCTTCB--CGGGSCTTCEEEECCEE
T ss_pred             ----HHHhhCCEEEECCCCCccc--CHHHcCCCcEEEEccCC
Confidence                2236789999999987632  23558899999999876

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.97  E-value=0.0038  Score=53.48  Aligned_cols=75  Identities=11%  Similarity=0.056  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHHHh----cCCCE-E--EeCCC----HHHHHHh-----
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEALSL----LGADK-F--VVSSD----LEQMKAL-----  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~~~----~g~~~-v--~~~~~----~~~~~~~-----  241 (299)
                      +++++||.|+ |++|.+.++.+...|++|+++++++ ++.+.+.++    .+... +  .|..+    .+.+.++     
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            4678999988 8999999999999999999999998 665554333    34221 2  24444    4443332     


Q ss_pred             --cCCccEEEEcCCC
Q 022313          242 --GKSLDFIIDTASG  254 (299)
Q Consensus       242 --~~~~d~v~d~~g~  254 (299)
                        .+++|++|+++|.
T Consensus       102 ~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          102 RAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence              2589999999883

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.96  E-value=0.0028  Score=53.59  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++   +... +  .|..+.+.+.++       .++
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            45789999987 99999999999999999999999988876654443   3221 2  244455444332       267


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.96  E-value=0.0018  Score=53.24  Aligned_cols=84  Identities=23%  Similarity=0.095  Sum_probs=60.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh---cCCccEEEEcCCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL---GKSLDFIIDTASGD  255 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~---~~~~d~v~d~~g~~  255 (299)
                      +++++||.|+ +++|...++.+...|++|++++++.+              .|..+.+.++++   -+++|+++++.|..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            4678999998 89999999999888999999987643              233444433332   16789999988842


Q ss_pred             --------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          256 --------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       256 --------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                                                ...+.+.+.++++|+++.++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence                                      1234455667778999999866

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.96  E-value=0.0011  Score=54.51  Aligned_cols=96  Identities=19%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---C-------CCEEEeCCCHHHHHHhcCCc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---G-------ADKFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g-------~~~v~~~~~~~~~~~~~~~~  245 (299)
                      ++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+.+.+   +       .-.++..+ ..........|
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD-GRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC-GGGCCGGGCCE
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC-cccCcccCCCc
Confidence            47899999999975 778888888765  59999999988877764332   1       11222222 11111113579


Q ss_pred             cEEEEcCCCchhHHHHHHhcccCcEEEEEc
Q 022313          246 DFIIDTASGDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       246 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      |+|+....-......+.+.|+++|+++..-
T Consensus       153 D~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          153 DAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            999987766666788999999999988753

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.96  E-value=0.0018  Score=57.40  Aligned_cols=91  Identities=21%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCc---
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGD---  255 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~---  255 (299)
                      -.|++|.|+|.|.+|...++.++.+|.+|++.+++....+.+ ++.|...+      +.+.++....|+|+.++...   
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~------~~l~ell~~aDvV~l~~Plt~~t  234 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-KETGAKFV------EDLNEMLPKCDVIVINMPLTEKT  234 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-HHHCCEEC------SCHHHHGGGCSEEEECSCCCTTT
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-HhCCCeEc------CCHHHHHhcCCEEEECCCCCHHH
Confidence            468899999999999999999999999999999887655555 46675432      12344556789999887742   


Q ss_pred             --hhHHHHHHhcccCcEEEEEcC
Q 022313          256 --HPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       256 --~~~~~~~~~l~~~G~~v~~g~  276 (299)
                        ..-...+..|+++..++.++-
T Consensus       235 ~~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          235 RGMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             TTCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHhhcHHHHhcCCCCCEEEECcC
Confidence              123567788898888888763

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.95  E-value=0.0072  Score=51.61  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHh---cCCCE-EE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSL---LGADK-FV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~-v~--~~~~~~~~~~~-------~~  243 (299)
                      ..++++||.|+ |++|...++.+...|++|+++++ ++++.+.+.++   .+... ++  |..+.+.+.++       .+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46789999998 89999999999999999999985 55555444333   34322 22  44444333322       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            89999999985

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.95  E-value=0.0028  Score=53.01  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC-chHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS-TSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~-~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|++++++ +++.+.+.+++   +.. .+  .|..+.+.+.++       .++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999988 999999999999999999999998 66665543333   322 12  244455444433       148


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++|.++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.95  E-value=0.0044  Score=52.97  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhc-----CC----CEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLL-----GA----DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~-----g~----~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++||++|+|. |..+..+++..+ .+|++++.+++-.+.+++.+     +.    -+++..+..+.+....+.||+|
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            3568999998863 556667777655 59999999998888776555     21    2344444444455445789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEE
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +-....          ...++.+.+.|+++|.++..
T Consensus       153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            875543          24588999999999999876

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.95  E-value=0.0018  Score=54.94  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC----CCE--E--EeCCCHHHHHHh---cCCcc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG----ADK--F--VVSSDLEQMKAL---GKSLD  246 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g----~~~--v--~~~~~~~~~~~~---~~~~d  246 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+...+++.    ...  .  .+..+.+.+.++   .+++|
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35788999987 899999999999999999999999887665544331    111  1  244445544443   36899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++++++|.
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.94  E-value=0.0021  Score=54.73  Aligned_cols=76  Identities=18%  Similarity=0.155  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-E--EEeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-K--FVVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. .  ..|..+.+.++++       .++
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            35788999987 89999999999999999999999988776554333   321 2  2344555444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.94  E-value=0.0016  Score=55.27  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP-  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  257 (299)
                      -++ +++|+|+|.+|...+..+...|++|+++.++.++.+.+.++++..  .  .+   +.+. ...|+|+.+++.... 
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~--~--~~---~~~~-~~~Divi~~tp~~~~~  185 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR--A--VP---LEKA-REARLLVNATRVGLED  185 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE--E--CC---GGGG-GGCSEEEECSSTTTTC
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc--h--hh---Hhhc-cCCCEEEEccCCCCCC
Confidence            356 899999999999999999999999999999988877776777763  2  11   2234 679999999986521 


Q ss_pred             -H-HH-HHHhcccCcEEEEEcCC
Q 022313          258 -F-DA-YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 -~-~~-~~~~l~~~G~~v~~g~~  277 (299)
                       . .. ....++++..+++++..
T Consensus       186 ~~~~~l~~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          186 PSASPLPAELFPEEGAAVDLVYR  208 (263)
T ss_dssp             TTCCSSCGGGSCSSSEEEESCCS
T ss_pred             CCCCCCCHHHcCCCCEEEEeecC
Confidence             0 00 14667788888877654

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.94  E-value=0.0034  Score=52.28  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cCCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LGAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++    .+.. .++  |..+.+.+.++       .++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5688999988 9999999999999999999999998776655333    2432 222  44455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++|.++|.
T Consensus        86 ~d~vi~~Ag~   95 (248)
T 2pnf_A           86 IDILVNNAGI   95 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.94  E-value=0.0041  Score=51.36  Aligned_cols=94  Identities=16%  Similarity=0.051  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -.+++|||+|+|.+|...++.+...|++|++++.... ..+.+.++.+...+-.....+    .-.++|+||-+++.+. 
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~----dL~~adLVIaAT~d~~-  103 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEE----DLLNVFFIVVATNDQA-  103 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGG----GSSSCSEEEECCCCTH-
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHh----HhCCCCEEEECCCCHH-
Confidence            4678899999999999999999999999999987643 344453332233221111111    2267999999999987 


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+...+..|..+.+-..
T Consensus       104 ~N~~I~~~ak~gi~VNvvD~  123 (223)
T 3dfz_A          104 VNKFVKQHIKNDQLVNMASS  123 (223)
T ss_dssp             HHHHHHHHSCTTCEEEC---
T ss_pred             HHHHHHHHHhCCCEEEEeCC
Confidence            55555444557777665443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.93  E-value=0.0038  Score=51.88  Aligned_cols=73  Identities=22%  Similarity=0.125  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .+++|||.|+ |.+|...++.+...  |++|+++++++++.+.+  .-+...+ .+..+.+.+.++-.++|+||.+++.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            4678999998 99999999999988  78999999987665433  1123322 3555666777666789999999874

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.93  E-value=0.0028  Score=54.38  Aligned_cols=101  Identities=13%  Similarity=0.137  Sum_probs=67.7

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccE
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      ..+|+....--.+++++|+|+|+.|.+++..+...|+ +|+++.|+.++.+.+++++.   .+..   +.+.++  .+|+
T Consensus       110 ~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~~---~~l~~l--~~Di  181 (282)
T 3fbt_A          110 GKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISY---DELSNL--KGDV  181 (282)
T ss_dssp             HHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEEH---HHHTTC--CCSE
T ss_pred             HHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cccH---HHHHhc--cCCE
Confidence            4455543332568999999999999999999999998 99999999988877755442   2221   222232  7999


Q ss_pred             EEEcCCCch--h---HHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGDH--P---FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~--~---~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+++++-..  .   .......++++..++++-..
T Consensus       182 vInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~  216 (282)
T 3fbt_A          182 IINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYN  216 (282)
T ss_dssp             EEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCS
T ss_pred             EEECCccCccCCCccCCCCHHHcCCCCEEEEEeeC
Confidence            999885311  0   01123456777777776443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.93  E-value=0.0041  Score=52.47  Aligned_cols=75  Identities=25%  Similarity=0.286  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh--------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL--------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~--------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. .+  .|..+.+.+.++        .++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999988 99999999999999999999999987766554333   322 12  244444444332        168


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus        93 id~li~~Ag~  102 (266)
T 1xq1_A           93 LDILINNLGA  102 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            9999999884

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.93  E-value=0.0028  Score=53.19  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh-------cCCccEEEE
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... .  .|..+.+.++++       .+++|++++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            36888887 899999999999999999999999888877766665322 2  244455555443       147999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        81 nAg~   84 (248)
T 3asu_A           81 NAGL   84 (248)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9873

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.93  E-value=0.0025  Score=53.28  Aligned_cols=74  Identities=19%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHHh---cCCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKAL---GKSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~---~~~~d~v~d~~g  253 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+. ++..-..  .|..+.+.+.++   .+++|++++++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            4688999988 89999999999999999999999987766553 4431122  244455555443   368999999988


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        84 ~   84 (246)
T 2ag5_A           84 F   84 (246)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.92  E-value=0.0011  Score=56.35  Aligned_cols=74  Identities=16%  Similarity=0.102  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      .++++||.|+ |++|...++.+...|++|++++++.++.+.+. .-... ...|..+.+.+.++       .+++|++++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-CTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-cCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4688999998 89999999999999999999999877665441 11111 12244454444332       268999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.92  E-value=0.0066  Score=52.20  Aligned_cols=74  Identities=16%  Similarity=0.234  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCC-EEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GAD-KFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++    +.. .++  |..+.+.+.++       .++
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999998 99999999999999999999999987766554443    432 222  44444444332       257


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|+++.++|
T Consensus       105 id~li~~Ag  113 (302)
T 1w6u_A          105 PNIVINNAA  113 (302)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999998

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.92  E-value=0.0044  Score=51.86  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=70.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc----CCC--EEEeCCCHHHHHHh-cCCccE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL----GAD--KFVVSSDLEQMKAL-GKSLDF  247 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~-~~~~d~  247 (299)
                      .++++++||-+|+|. |..+..+++..  +.+++.++.+++..+.+.+.+    |.+  .+...+ .... .+ .+.+|+
T Consensus        93 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d-~~~~-~~~~~~~D~  169 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGK-LEEA-ELEEAAYDG  169 (258)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESC-GGGC-CCCTTCEEE
T ss_pred             CCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECc-hhhc-CCCCCCcCE
Confidence            348999999999985 88888899885  469999999998887775443    522  222222 1111 12 257999


Q ss_pred             EEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+...... ..+..+.+.|+++|+++.+...
T Consensus       170 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  200 (258)
T 2pwy_A          170 VALDLMEPWKVLEKAALALKPDRFLVAYLPN  200 (258)
T ss_dssp             EEEESSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred             EEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            99877665 5688999999999999987654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.92  E-value=0.0014  Score=54.06  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-cCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-GKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~d~v~d~~g~~~~  257 (299)
                      +++.+||=+|+|. |..+..+++. +++|+.++.++...+.+.+....-.++..+-.+.+... .+.||+|+........
T Consensus        47 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~  124 (226)
T 3m33_A           47 TPQTRVLEAGCGH-GPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSV  124 (226)
T ss_dssp             CTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSGG
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHHH
Confidence            6788999999874 6677777776 78999999999988888655443344433221111111 3679999988766667


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +..+.+.|+|+|+++..+..
T Consensus       125 l~~~~~~LkpgG~l~~~~~~  144 (226)
T 3m33_A          125 ILRLPELAAPDAHFLYVGPR  144 (226)
T ss_dssp             GGGHHHHEEEEEEEEEEESS
T ss_pred             HHHHHHHcCCCcEEEEeCCc
Confidence            88999999999999965443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.91  E-value=0.004  Score=53.13  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--C-EEEeCCCHHHHHHhc-CC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--D-KFVVSSDLEQMKALG-KS  244 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~-~~  244 (299)
                      ..+++....--++++++|+|+|++|.+++..+...|++|+++.|+.++.+.+.++++.  . ...+.      .++. +.
T Consensus       107 ~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~------~~~~~~~  180 (272)
T 1p77_A          107 VTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSM------DSIPLQT  180 (272)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEG------GGCCCSC
T ss_pred             HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeH------HHhccCC
Confidence            3344443322467899999999999999999999999999999999888877666642  1 12221      1232 48


Q ss_pred             ccEEEEcCCCchhHH---HHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGDHPFD---AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~---~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+++++++......   .....++++..++++...
T Consensus       181 ~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~  216 (272)
T 1p77_A          181 YDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYA  216 (272)
T ss_dssp             CSEEEECCCC-------CCCHHHHHHCSCEEESCCC
T ss_pred             CCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCC
Confidence            999999999654111   012345666777777554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.91  E-value=0.0042  Score=52.10  Aligned_cols=93  Identities=25%  Similarity=0.305  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-------cCCccEEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +-++++||.|+ |++|...++.+...|++|+++++++++.+..      ...++..+.+.+.++       .+++|+++.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~------~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH------SFTIKDSGEEEIKSVIEKINSKSIKVDTFVC   93 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSE------EEECSCSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccc------ceEEEeCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            34678999998 8999999999999999999999987654311      112233444443332       257999999


Q ss_pred             cCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|..                          ...+.+.+.++++|+++.++..
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  146 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS  146 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEech
Confidence            99831                          0234455667778999999876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.91  E-value=0.009  Score=50.36  Aligned_cols=99  Identities=19%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCCEEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTSKK---EEALSLLGADKFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~~~---~~~~~~~g~~~v~--~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+   +++|...++.+...|++|+++++++...   +++.++.+...++  |..+.+.++++       .+
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   91 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWD   91 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            67899999974   6899999999999999999998885433   3333444532222  44455444332       26


Q ss_pred             CccEEEEcCCCch------------------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGDH------------------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~~------------------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|...                              ..+.+++.++++|+++.++..
T Consensus        92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  155 (271)
T 3ek2_A           92 SLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYL  155 (271)
T ss_dssp             CEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred             CCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecc
Confidence            8999999987421                              123344556668899998776

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.91  E-value=0.0072  Score=50.11  Aligned_cols=74  Identities=20%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh-------cCCc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSL---LGADK-F--VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~~~  245 (299)
                      ++++||.|+ |++|...++.+...|++|+++ .+++++.+.+.++   .+... .  .|..+.+.+.++       .+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            468899987 999999999999999999985 7877666554333   24221 1  244454444332       2589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++|.++|.
T Consensus        81 d~li~~Ag~   89 (244)
T 1edo_A           81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.91  E-value=0.0044  Score=52.15  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK--KEEALSLL---GADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~--~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      ++++||.|+ |++|...++.+...|++|+++++++++  .+.+.+++   +... .  .|..+.+.+.++       .++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            578999998 899999999988889999999998776  55543333   3222 2  244455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++++.|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.90  E-value=0.0062  Score=50.05  Aligned_cols=98  Identities=17%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CC---CEEEeCCCHHHHHHhc-----CCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GA---DKFVVSSDLEQMKALG-----KSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~~~~-----~~~  245 (299)
                      .++++||-+|+| .|..++.+++..  +.+++.++.+++..+.+++.+   |.   -.++..+..+.+.++.     +.|
T Consensus        68 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            677899999997 688888888876  469999999998877764433   43   2333333333333332     679


Q ss_pred             cEEEEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+|+-.....   ..+..+.+.|+++|.++.....
T Consensus       147 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          147 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            9998765432   3478888999999999886544

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.90  E-value=0.0026  Score=55.48  Aligned_cols=90  Identities=22%  Similarity=0.301  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|++++++.++. .+ ++.|... .   +.   .++....|+|+.++....  
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~g~~~-~---~l---~ell~~aDvVvl~~P~~~~t  210 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KA-EKINAKA-V---SL---EELLKNSDVISLHVTVSKDA  210 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HH-HHTTCEE-C---CH---HHHHHHCSEEEECCCCCTTS
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HH-HhcCcee-c---CH---HHHHhhCCEEEEeccCChHH
Confidence            477899999999999999999999999999999987764 34 5677642 1   22   233346899999887432  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+ ...+..+++++.++.++..
T Consensus       211 ~~li~~~~l~~mk~ga~lIn~arg  234 (313)
T 2ekl_A          211 KPIIDYPQFELMKDNVIIVNTSRA  234 (313)
T ss_dssp             CCSBCHHHHHHSCTTEEEEESSCG
T ss_pred             HHhhCHHHHhcCCCCCEEEECCCC
Confidence              12 5677889999888888654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.88  E-value=0.003  Score=53.81  Aligned_cols=94  Identities=12%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCc---
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGD---  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~---  255 (299)
                      +|||.|+ |.+|...++.+...  |.+|+++++++++.+.+ ...+.+.+ .|..+.+.+.+.-.++|+||.+++..   
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTL-ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN   80 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHH-hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence            5899998 99999999988887  88999999988776655 23344332 25556677777767899999998842   


Q ss_pred             ----hhHHHHHHhcccC--cEEEEEcCC
Q 022313          256 ----HPFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       256 ----~~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                          .....+++.++..  ++++.++..
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence                1123344444444  478887655

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.88  E-value=0.0022  Score=51.44  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---CC---CEEEeCCCHHHHH-HhcCCccEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---GA---DKFVVSSDLEQMK-ALGKSLDFI  248 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~-~~~~~~d~v  248 (299)
                      ++++++||-+|+|. |..+..+++..+  .+++.++.+++..+.+++.+   |.   -.++.. +...+. ...+.||+|
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           20 VKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD-GHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS-CGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHHhhhccCCceEE
Confidence            37889999999876 778888888754  59999999988777764432   32   223322 222222 234689999


Q ss_pred             EEcCCC---------------chhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASG---------------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +...+-               ...+..+.+.|+++|+++.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            866532               13588899999999999877543

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.88  E-value=0.0026  Score=54.30  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---C-EE--EeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---D-KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~-~v--~~~~~~~~~~~~-------~  242 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.   . .+  .|..+.+.++++       .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            5688999987 89999999999999999999999988776654443   22   1 22  244455444332       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|++++++|.
T Consensus        85 g~iD~lv~nAg~   96 (280)
T 1xkq_A           85 GKIDVLVNNAGA   96 (280)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            589999999873

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.87  E-value=0.0032  Score=53.53  Aligned_cols=75  Identities=16%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhc----CCCE-EE--eCCCH----HHHHHh-----
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLL----GADK-FV--VSSDL----EQMKAL-----  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~----g~~~-v~--~~~~~----~~~~~~-----  241 (299)
                      +++++||.|+ |++|...++.+...|++|+++++ ++++.+.+.+++    +... ++  |..+.    +.+.++     
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4678999987 89999999999999999999999 777666554443    4222 22  33344    443332     


Q ss_pred             --cCCccEEEEcCCC
Q 022313          242 --GKSLDFIIDTASG  254 (299)
Q Consensus       242 --~~~~d~v~d~~g~  254 (299)
                        .+++|++++++|.
T Consensus        90 ~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           90 RAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence              2589999999983

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.87  E-value=0.0065  Score=52.34  Aligned_cols=97  Identities=20%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhcCCccEEE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ..++++.+||-+|+|. |..+..+++..+++|+.++.+++..+.+.+.+   |..   .++..+ ..   ++.+.||+|+
T Consensus        68 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~---~~~~~fD~v~  142 (302)
T 3hem_A           68 LNLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG-WE---EFDEPVDRIV  142 (302)
T ss_dssp             TCCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC-GG---GCCCCCSEEE
T ss_pred             cCCCCcCEEEEeeccC-cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC-HH---HcCCCccEEE
Confidence            3458999999999985 88888999988899999999998877764432   322   222222 11   2257899998


Q ss_pred             EcCCC---------------chhHHHHHHhcccCcEEEEEcCC
Q 022313          250 DTASG---------------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....-               ...+..+.+.|+|+|+++.....
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            74321               13578888999999999876544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.86  E-value=0.0036  Score=54.40  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---CEEEeCCCHHHHHHhcCCccEEE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---DKFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ..++++.+||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.+   |.   -.++..+ .   .++.+.||+|+
T Consensus        86 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~---~~~~~~fD~v~  160 (318)
T 2fk8_A           86 LDLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG-W---EDFAEPVDRIV  160 (318)
T ss_dssp             SCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC-G---GGCCCCCSEEE
T ss_pred             cCCCCcCEEEEEcccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC-h---HHCCCCcCEEE
Confidence            3448899999999976 88888888877899999999998887775443   32   1222222 1   12237899998


Q ss_pred             Ec-----CCC---chhHHHHHHhcccCcEEEEEcCC
Q 022313          250 DT-----ASG---DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~-----~g~---~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..     .+.   ...++.+.+.|+++|+++.....
T Consensus       161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             EeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            76     332   23577788999999999876443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.86  E-value=0.0044  Score=52.01  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      .++++.+||-+|+| .|..+..+++..+++|+.++.+++..+.+.+....   -.++..+- .......+.||+|+....
T Consensus        52 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           52 ELNENSKVLDIGSG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDI-LTKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT-TTCCCCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEECCC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc-ccCCCCCCcEEEEeHHHH
Confidence            34889999999997 57888888887788999999999988888554432   12222221 111111367999997543


Q ss_pred             Cc--------hhHHHHHHhcccCcEEEEEcCC
Q 022313          254 GD--------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~--------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      -.        ..++.+.+.|+|+|+++.....
T Consensus       130 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          130 ILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            22        2467888999999999887543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.86  E-value=0.012  Score=49.21  Aligned_cols=72  Identities=21%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eC-CCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VS-SDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~-~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++++..    ++++...++ |. .+.+.+.+...++|++++++|.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----HhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            57789999998 9999999999999999999999986433    344532222 22 1222222223489999999983

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.86  E-value=0.011  Score=48.58  Aligned_cols=98  Identities=20%  Similarity=0.276  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHh---cCCC----EEEeCCCHHHHHHh-cCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSL---LGAD----KFVVSSDLEQMKAL-GKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~---~g~~----~v~~~~~~~~~~~~-~~~~d~v  248 (299)
                      +++.+||-+|+|. |..++.+++..  +.+|+.++.+++..+.+++.   .|..    .++..+..+.+..+ .+.||+|
T Consensus        55 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           55 NGSTGAIAITPAA-GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             TTCCEEEEESTTH-HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCCCEEEEcCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            4556999889874 88888888876  57999999998877766433   3432    22222223333344 4789999


Q ss_pred             EEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |-.....   ..++.+.+.|+++|.++.-...
T Consensus       134 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          134 FGQVSPMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             EECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            8755432   2477888999999999875443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.86  E-value=0.0064  Score=50.64  Aligned_cols=76  Identities=24%  Similarity=0.284  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C--CCEEE--eC--CCHHHHHHh-------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G--ADKFV--VS--SDLEQMKAL-------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g--~~~v~--~~--~~~~~~~~~-------  241 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +  ...++  +.  .+.+.+.++       
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            46789999988 89999999999999999999999988877654433   2  22222  22  334333332       


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      .+++|+++.+.|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2589999999884

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.86  E-value=0.0031  Score=53.49  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cCCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LGADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      -.++++||.|+ +++|.+.++.+...|++|++++++.++.+.+.++    .+... .  .|..+.+.+.++       .+
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35789999987 8999999999999999999999998877665443    34322 2  233444333322       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        98 ~id~lv~nAg~  108 (266)
T 4egf_A           98 GLDVLVNNAGI  108 (266)
T ss_dssp             SCSEEEEECCC
T ss_pred             CCCEEEECCCc
Confidence            89999999883

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.85  E-value=0.0035  Score=56.73  Aligned_cols=96  Identities=19%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCC---CeEEEEeCCchHHHHHHHhcCC-----CE--EEeCCCHHHHHHhcC--CccEEE
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFG---LNVTVLSTSTSKKEEALSLLGA-----DK--FVVSSDLEQMKALGK--SLDFII  249 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g---~~v~~~~~~~~~~~~~~~~~g~-----~~--v~~~~~~~~~~~~~~--~~d~v~  249 (299)
                      .+|+|+|+|.+|..+++.+...+   .+|++++++.++.+.+.++++.     -.  .++..+.+.+.++-.  ++|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            36899999999999999888877   4899999999988877666531     12  234445555555433  489999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++.......+..+++.+-.++++...
T Consensus        82 n~ag~~~~~~v~~a~l~~g~~vvD~a~~  109 (405)
T 4ina_A           82 NIALPYQDLTIMEACLRTGVPYLDTANY  109 (405)
T ss_dssp             ECSCGGGHHHHHHHHHHHTCCEEESSCC
T ss_pred             ECCCcccChHHHHHHHHhCCCEEEecCC
Confidence            9998654345555677777777765443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.82  E-value=0.0051  Score=51.95  Aligned_cols=76  Identities=22%  Similarity=0.278  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcC-C-hHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C-C-CEE--EeCCCHHHHHHh-------c
Q 022313          179 QPGKSLGVIGL-G-GLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G-A-DKF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g-~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g-~-~~v--~~~~~~~~~~~~-------~  242 (299)
                      -+++++||.|+ | ++|...++.+...|++|++++++.++.+.+.+++   + . -.+  .|..+.+.+.++       .
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            45789999998 7 7999999999999999999999988877665544   2 1 122  244455444332       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|+++.++|-
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            589999999983

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.82  E-value=0.0045  Score=50.96  Aligned_cols=98  Identities=17%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      .++++.+||-+|+|. |..+..+++.. .+|+.++.+++..+.+.+.+..   -.++..+-.+... ..+.||+|+....
T Consensus        67 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~  143 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWAT  143 (231)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSB
T ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCc
Confidence            348889999999985 77888888764 8999999999888887655431   2233322211111 2367999998766


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      -......+.+.|+++|+++..-..
T Consensus       144 ~~~~~~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          144 APTLLCKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             BSSCCHHHHHTEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEcC
Confidence            555567889999999999877433

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.81  E-value=0.0092  Score=49.51  Aligned_cols=71  Identities=20%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCC--HH-HHHHh---cCCccEEEEcC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSD--LE-QMKAL---GKSLDFIIDTA  252 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~--~~-~~~~~---~~~~d~v~d~~  252 (299)
                      ++++||.|+ |++|...++.+...|++|+++++++++.   .++++...+ .|..+  .+ .+++.   .+++|+++++.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999998 9999999999999999999999987762   234453222 12222  11 12221   26899999998


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      |.
T Consensus        79 g~   80 (239)
T 2ekp_A           79 AV   80 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.80  E-value=0.015  Score=50.60  Aligned_cols=90  Identities=17%  Similarity=0.112  Sum_probs=67.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCC-CEEEeCCCHHHHHH-hcCCccEEEEcCCCch-
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGA-DKFVVSSDLEQMKA-LGKSLDFIIDTASGDH-  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~-~~~~~d~v~d~~g~~~-  256 (299)
                      .+|.|+|.|.+|...++.++..|.  +|+++++++++.+.+ .+.|. +......     .+ .....|+||.++.... 
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-~~~G~~~~~~~~~-----~~~~~~~aDvVilavp~~~~  107 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTSI-----AKVEDFSPDFVMLSSPVRTF  107 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESCT-----TGGGGGCCSEEEECSCGGGH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHCCCcchhcCCH-----HHHhhccCCEEEEeCCHHHH
Confidence            679999999999999999999998  999999999888887 57775 3332211     23 3467899999998754 


Q ss_pred             --hHHHHHHhcccCcEEEEEcCC
Q 022313          257 --PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+......++++..+++++..
T Consensus       108 ~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          108 REIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHhhccCCCcEEEECCCC
Confidence              233445567777777777654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.80  E-value=0.0036  Score=52.80  Aligned_cols=93  Identities=19%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---------------------C-EEEeCCCHH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---------------------D-KFVVSSDLE  236 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---------------------~-~v~~~~~~~  236 (299)
                      +++.+||.+|+|. |..+..+++. |++|+.++.++.-++.+.++.+.                     . .++..+ ..
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D-~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS-IF  143 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC-TT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc-cc
Confidence            5788999999874 6677777765 89999999999998888655532                     1 122111 11


Q ss_pred             HHHHh-cCCccEEEEcCCC--------chhHHHHHHhcccCcEEEEE
Q 022313          237 QMKAL-GKSLDFIIDTASG--------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       237 ~~~~~-~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      .+... .+.||+|++...-        ...++.+.+.|+|+|+++.+
T Consensus       144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            12111 2679999974321        12466788999999998644

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.80  E-value=0.0067  Score=51.14  Aligned_cols=75  Identities=20%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+ |++|...++.+...|++|+++ .+++++.+.+.+++   +... +  .|..+.+.++++       .+
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999987 899999999999999999886 78877666554443   4322 2  244455444332       26


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      ++|++++++|
T Consensus        82 ~id~lv~nAg   91 (258)
T 3oid_A           82 RLDVFVNNAA   91 (258)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999999997

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.80  E-value=0.007  Score=50.94  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHH----h----cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKA----L----GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~----~----~~~  244 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++   +.. ..  .|..+.+.+.+    +    .++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4688999987 89999999999999999999999988776654443   322 12  24444443322    2    357


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|+++++.|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            899999994

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.79  E-value=0.005  Score=48.79  Aligned_cols=97  Identities=10%  Similarity=0.134  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC--CEEEeCCCHHHHHH-hcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA--DKFVVSSDLEQMKA-LGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~v~~~~~~~~~~~-~~~~~d~v~d~  251 (299)
                      ++++++||=+|+|. |..+..+++. +.+|+.++.+++..+.+++.+   +.  -.++. .+...+.. ..+.||+|+-+
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGN-GNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcHHHHHhhccCCcCEEEEe
Confidence            47899999899875 7777888877 889999999998877764433   32  23333 33222222 24679999866


Q ss_pred             CCC-----------c----hhHHHHHHhcccCcEEEEEcCC
Q 022313          252 ASG-----------D----HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~-----------~----~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+-           .    ..+..+.+.|+++|+++.+-..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            321           1    1247788999999999887554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.78  E-value=0.002  Score=57.39  Aligned_cols=92  Identities=17%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+ |++++++....+.+ +++|...+   .+   +.++....|+|+.++.... 
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvV~l~~P~t~~  234 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE-EKVGARRV---EN---IEELVAQADIVTVNAPLHAG  234 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHH-HHTTEEEC---SS---HHHHHHTCSEEEECCCCSTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHH-HhcCcEec---CC---HHHHHhcCCEEEECCCCChH
Confidence            4788999999999999999999999997 99999887666555 56675321   12   2334457899999887641 


Q ss_pred             ---hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 ---PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ---~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                         .+ ...+..|+++..++.++..
T Consensus       235 t~~li~~~~l~~mk~ga~lIn~arG  259 (364)
T 2j6i_A          235 TKGLINKELLSKFKKGAWLVNTARG  259 (364)
T ss_dssp             TTTCBCHHHHTTSCTTEEEEECSCG
T ss_pred             HHHHhCHHHHhhCCCCCEEEECCCC
Confidence               12 4567889998888888643

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.78  E-value=0.0035  Score=54.64  Aligned_cols=99  Identities=15%  Similarity=-0.026  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----C--CCEE--EeCCCHHHHHHhcCCccEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----G--ADKF--VVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g--~~~v--~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .++++|||.|+ |.+|...+..+...|++|++++++.++.+.+.+.+    +  ...+  .+..+.+.+.++-.++|+||
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            56789999998 99999999999889999999999877665543221    2  2222  23334444444446899999


Q ss_pred             EcCCCch--------------hHHHHHHhcc--c-CcEEEEEcCC
Q 022313          250 DTASGDH--------------PFDAYMSLLK--V-AGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~~--------------~~~~~~~~l~--~-~G~~v~~g~~  277 (299)
                      .+++...              ....+++.+.  . .++++.++..
T Consensus        89 h~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~  133 (342)
T 1y1p_A           89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST  133 (342)
T ss_dssp             ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred             EeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence            9987421              1223334433  2 3788888765

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.01  Score=50.76  Aligned_cols=75  Identities=11%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhc----CCCE-EE--eCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLL----GADK-FV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~----g~~~-v~--~~~~~~~~~~~-------~~  243 (299)
                      .++++||.|+ |++|...++.+...|++|+++++ +.++.+.+.+++    +... .+  |..+.+.+.++       .+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            5688999988 89999999999999999999998 444544443332    3222 22  44444444332       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus       104 ~iD~lv~nAg~  114 (281)
T 3v2h_A          104 GADILVNNAGV  114 (281)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999984

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.77  E-value=0.0096  Score=50.74  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcC-Ch--HHHHHHHHHHHCCCeEEEEeCCc--hHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GG--LGHMAVKFGKAFGLNVTVLSTST--SKKEEALSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~--~G~~a~~~a~~~g~~v~~~~~~~--~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      -+++++||.|+ |.  +|...++.+...|++|++++++.  +..+++.++.+.-.++  |..+.+.+.++       .++
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            45789999985 44  99999999999999999999987  5666665555533333  44454444332       268


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus       104 id~li~nAg~  113 (280)
T 3nrc_A          104 LDAIVHSIAF  113 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999884

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.77  E-value=0.0044  Score=52.64  Aligned_cols=94  Identities=12%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCc---
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGD---  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~---  255 (299)
                      +|||.|+ |.+|...++.+...  |.+|+++++++++.+.+ ...+...+ .|..+.+.+.+.-.++|+||.+++..   
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~   79 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL-AAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQ   79 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhh-hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchH
Confidence            4899998 99999999988887  88999999987766555 23344332 25556677777767899999998742   


Q ss_pred             --hhHHHHHHhcccC--cEEEEEcCC
Q 022313          256 --HPFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       256 --~~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                        .....+++.++..  ++++.++..
T Consensus        80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           80 RAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             --CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCC
Confidence              1234444444433  578887665

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.77  E-value=0.0049  Score=52.71  Aligned_cols=73  Identities=25%  Similarity=0.321  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCE--E--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADK--F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~--v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+.++   .+...  +  .|..+.+.+.++       .++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999998 9999999999999999999999998877665433   24322  2  244444443332       258


Q ss_pred             ccEEEEcC
Q 022313          245 LDFIIDTA  252 (299)
Q Consensus       245 ~d~v~d~~  252 (299)
                      +|+++.+.
T Consensus       107 iD~li~na  114 (286)
T 1xu9_A          107 LDMLILNH  114 (286)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99999983

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.77  E-value=0.0069  Score=51.64  Aligned_cols=76  Identities=20%  Similarity=0.209  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-------------CchHHHHHHHh---cCCCEE---EeCCCHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-------------STSKKEEALSL---LGADKF---VVSSDLEQM  238 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-------------~~~~~~~~~~~---~g~~~v---~~~~~~~~~  238 (299)
                      -+++++||.|+ +++|...++.+...|++|+++++             ++++.+.+.+.   .+....   .|..+.+.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            46789999998 89999999999999999999987             45555544332   343222   244555544


Q ss_pred             HHh-------cCCccEEEEcCCC
Q 022313          239 KAL-------GKSLDFIIDTASG  254 (299)
Q Consensus       239 ~~~-------~~~~d~v~d~~g~  254 (299)
                      .++       .+++|++++++|.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            433       2689999999984

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.76  E-value=0.0065  Score=50.91  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhc--CCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALG--KSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~--~~~d~v  248 (299)
                      .++++||-+|+|. |..+..+++..  +.+|+.++.+++..+.+++.+   |..   .++..+..+.+....  +.||+|
T Consensus        62 ~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           62 TQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             cCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            5778999999875 77888888876  469999999998877764433   532   333333333344443  389999


Q ss_pred             EEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +-.....   ..++.+.+.|+++|.++.-...
T Consensus       141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          141 FIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             EECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             EECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            9544432   2477888999999998876544

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.75  E-value=0.0063  Score=50.60  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHh---cCCCE-EE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSL---LGADK-FV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~-v~--~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|+++ .+++++.+.+.++   .+... .+  |..+.+.+.++       .++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999988 999999999999999999998 6666655544332   34322 22  44455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.74  E-value=0.009  Score=52.14  Aligned_cols=91  Identities=13%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD  259 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  259 (299)
                      ...+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|....   .   ...+.....|+|+.++..+....
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~---~~~e~~~~aDvVi~~vp~~~~~~  102 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-ALGATIH---E---QARAAARDADIVVSMLENGAVVQ  102 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCEEE---S---SHHHHHTTCSEEEECCSSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-HCCCEee---C---CHHHHHhcCCEEEEECCCHHHHH
Confidence            346899999999999999999999999999999999888884 4464322   1   22233467899999998754344


Q ss_pred             HHH------HhcccCcEEEEEcCC
Q 022313          260 AYM------SLLKVAGVYVLVGFP  277 (299)
Q Consensus       260 ~~~------~~l~~~G~~v~~g~~  277 (299)
                      .++      ..++++..++..+..
T Consensus       103 ~v~~~~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          103 DVLFAQGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             HHHTTTCHHHHCCTTCEEEECSCC
T ss_pred             HHHcchhHHhhCCCCCEEEecCCC
Confidence            444      356677777766543

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.74  E-value=0.01  Score=49.57  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++++||.|+ |++|...++.+...|++|++++++++.     ++.+...+ .|..+.+.+.++       .+++|++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999998 899999999999999999999988652     23342221 244455444332       258999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.73  E-value=0.0057  Score=51.99  Aligned_cols=74  Identities=24%  Similarity=0.300  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCCC-EEE--eCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGAD-KFV--VSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~v~--~~~~~~~~~~~-------~~~~  245 (299)
                      +++++||.|+ |++|...+..+...|++|+++++++++.+.+.+   +.+.. .++  |..+.+.+.++       .+++
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            5688999987 899999999888889999999998766544422   23422 222  44444444332       2579


Q ss_pred             cEEEEcCC
Q 022313          246 DFIIDTAS  253 (299)
Q Consensus       246 d~v~d~~g  253 (299)
                      |+++.++|
T Consensus       113 d~li~~Ag  120 (279)
T 3ctm_A          113 DVFVANAG  120 (279)
T ss_dssp             SEEEECGG
T ss_pred             CEEEECCc
Confidence            99999887

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.73  E-value=0.0035  Score=52.49  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhcCCccEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++++||-+|+|. |..+..+++..  +.+++.++.+++..+.+++.+   |..   .++..+-.+.  ...+.+|+|
T Consensus        90 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v  166 (255)
T 3mb5_A           90 GISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG--IEEENVDHV  166 (255)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC--CCCCSEEEE
T ss_pred             CCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc--cCCCCcCEE
Confidence            348999999999986 88888888884  569999999988877775443   432   2222221111  012569999


Q ss_pred             EEcCCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +....... .++.+.+.|+++|+++.+...
T Consensus       167 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          167 ILDLPQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             EECSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             EECCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence            98777653 689999999999999987644

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.72  E-value=0.0064  Score=52.34  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--------CCC-EE--EeCCCHHHHHHh-----
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL--------GAD-KF--VVSSDLEQMKAL-----  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~--------g~~-~v--~~~~~~~~~~~~-----  241 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++.+.+.+++        +.. .+  .|..+.+.+.++     
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            35689999998 99999999999999999999999987766554332        322 12  244444444332     


Q ss_pred             --cCCccEEEEcCC
Q 022313          242 --GKSLDFIIDTAS  253 (299)
Q Consensus       242 --~~~~d~v~d~~g  253 (299)
                        .+++|++|.++|
T Consensus        96 ~~~g~id~li~~Ag  109 (303)
T 1yxm_A           96 DTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence              257999999998

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.72  E-value=0.0053  Score=51.94  Aligned_cols=98  Identities=16%  Similarity=0.042  Sum_probs=67.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH--HhcCC-CEE--EeCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL--SLLGA-DKF--VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~--~~~g~-~~v--~~~~~~~~~~~~-------~~~~d  246 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+.+.  ++.+. ...  .|-.+.+.++++       -++.|
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            6899999988 89999999999999999999999876544321  23342 222  244455444332       27899


Q ss_pred             EEEEcCCCc------------------------hhHHHHHHhcc-cCcEEEEEcCC
Q 022313          247 FIIDTASGD------------------------HPFDAYMSLLK-VAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~------------------------~~~~~~~~~l~-~~G~~v~~g~~  277 (299)
                      ++++++|-.                        ...+.+++.|+ .+|+++.+++.
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  141 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK  141 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence            999999831                        12344455554 46999999877

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.71  E-value=0.0034  Score=52.55  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-------cCCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~v~d~  251 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.+ .  +  ...|..+.+.+.++       .+++|+++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-F--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-E--E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHh-c--C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5688999988 8999999999999999999999987654432 1  1  22355555444332       2578999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      .|.
T Consensus        89 Ag~   91 (247)
T 1uzm_A           89 AGL   91 (247)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            884

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.70  E-value=0.0065  Score=50.19  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCC-C--EEEeCCCHH--HHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGA-D--KFVVSSDLE--QMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~-~--~v~~~~~~~--~~~~~~~~~d~v~d~  251 (299)
                      ++++++||-+|+|. |..+..+++..+ .+|+.++.+++..+.+.+.... +  .++..+..+  ........||+|+..
T Consensus        72 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (230)
T 1fbn_A           72 IKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence            47889999999986 888888888876 5999999999888777544321 1  122222111  101122679999976


Q ss_pred             CCCc---h-hHHHHHHhcccCcEEEEE
Q 022313          252 ASGD---H-PFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       252 ~g~~---~-~~~~~~~~l~~~G~~v~~  274 (299)
                      ...+   . .+..+.+.|+++|+++..
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          151 VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            6554   2 377788899999999886

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.70  E-value=0.0041  Score=55.91  Aligned_cols=92  Identities=11%  Similarity=0.082  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++.+|.+|++.+++....+.. +++|....   .   .+.++....|+|+.++....  
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~-~~~G~~~~---~---~l~ell~~aDvV~l~~Plt~~t  261 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTWH---A---TREDMYPVCDVVTLNCPLHPET  261 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEEC---S---SHHHHGGGCSEEEECSCCCTTT
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhH-hhcCceec---C---CHHHHHhcCCEEEEecCCchHH
Confidence            367899999999999999999999999999999886555544 45675421   1   22345567899998877432  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+ ...+..|+++..++.++..
T Consensus       262 ~~li~~~~l~~mk~gailIN~aRG  285 (393)
T 2nac_A          262 EHMINDETLKLFKRGAYIVNTARG  285 (393)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             HHHhhHHHHhhCCCCCEEEECCCc
Confidence              12 4677888888888887643

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.70  E-value=0.017  Score=49.83  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      .+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.......     ..+.....|+||.++......+..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~~-----~~e~~~~aDvvi~~vp~~~~~~~v   81 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANL-LAEGACGAAAS-----AREFAGVVDALVILVVNAAQVRQV   81 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEESS-----STTTTTTCSEEEECCSSHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHcCCccccCC-----HHHHHhcCCEEEEECCCHHHHHHH
Confidence            579999999999999999999999999999999988888 45676542211     112335689999999876435555


Q ss_pred             H-------HhcccCcEEEEEcC
Q 022313          262 M-------SLLKVAGVYVLVGF  276 (299)
Q Consensus       262 ~-------~~l~~~G~~v~~g~  276 (299)
                      +       ..++++..++..+.
T Consensus        82 ~~~~~~l~~~l~~g~ivv~~st  103 (303)
T 3g0o_A           82 LFGEDGVAHLMKPGSAVMVSST  103 (303)
T ss_dssp             HC--CCCGGGSCTTCEEEECSC
T ss_pred             HhChhhHHhhCCCCCEEEecCC
Confidence            4       44566666666543

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.69  E-value=0.0043  Score=51.78  Aligned_cols=73  Identities=18%  Similarity=0.067  Sum_probs=53.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-e--CCchHHHHHHHhc-CCCEEEeCCCHH-HHHHh---cCCccEEEEc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-S--TSTSKKEEALSLL-GADKFVVSSDLE-QMKAL---GKSLDFIIDT  251 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~--~~~~~~~~~~~~~-g~~~v~~~~~~~-~~~~~---~~~~d~v~d~  251 (299)
                      ++++||.|+ |++|...++.+...|++|+++ +  +++++.+.+.+++ +. .+.+..+.+ .++++   .+++|+++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~g~iD~lv~~   79 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKPERLVDATLQHGEAIDTIVSN   79 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCGGGHHHHHGGGSSCEEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            467899987 899999999999999999999 6  8888887776666 32 233444322 23332   3689999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      +|.
T Consensus        80 Ag~   82 (244)
T 1zmo_A           80 DYI   82 (244)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            883

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.68  E-value=0.0091  Score=50.09  Aligned_cols=73  Identities=14%  Similarity=0.010  Sum_probs=50.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH--hcCCC-EEEeCCCHHH-HHHh---cCCccEEEEcCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS--LLGAD-KFVVSSDLEQ-MKAL---GKSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~--~~g~~-~v~~~~~~~~-~~~~---~~~~d~v~d~~g  253 (299)
                      +++||.|+ |++|...++.+...|++|+++++++++.+.+.+  +.+.+ ..++..+.+. ++++   .+++|+++++.|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nAg   81 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   81 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            46889987 899999999999999999999998776655422  22422 2223333322 2222   268999999988


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        82 ~   82 (254)
T 1zmt_A           82 F   82 (254)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0062  Score=51.16  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=54.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  247 (299)
                      ++++||.|+ +++|...++.+...  +++|+.+++++++.+.+.++++....   .|..+.+.++++       .+++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999987 89999888777666  46899999999888888777663322   244455444332       268999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ++++.|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9999884

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.66  E-value=0.0095  Score=50.77  Aligned_cols=95  Identities=23%  Similarity=0.321  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---CEEEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---DKFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++.+||-+|+|. |..+..+++..+.+|+.++.+++..+.+.+.+   |.   -.++.. +..   ++.+.||+|+.
T Consensus        61 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~---~~~~~fD~v~~  135 (287)
T 1kpg_A           61 GLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GWE---QFDEPVDRIVS  135 (287)
T ss_dssp             TCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CGG---GCCCCCSEEEE
T ss_pred             CCCCcCEEEEECCcc-cHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-Chh---hCCCCeeEEEE
Confidence            348899999999875 77888888777899999999998887775443   21   122222 211   23378999986


Q ss_pred             c-----CCC---chhHHHHHHhcccCcEEEEEcC
Q 022313          251 T-----ASG---DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       251 ~-----~g~---~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      .     .+.   ...++.+.+.|+|+|+++....
T Consensus       136 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          136 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            5     221   2357888899999999987643

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.65  E-value=0.015  Score=49.10  Aligned_cols=92  Identities=17%  Similarity=0.068  Sum_probs=62.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++      .-.... ..|..+.+.+.++       .+++|++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999998 999999999999999999999988654      011211 1244455444332       258999999


Q ss_pred             cCCCch-------------------------hHHHHHHhccc--CcEEEEEcCC
Q 022313          251 TASGDH-------------------------PFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      ++|...                         ..+.+++.++.  .|+++.++..
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  134 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSV  134 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            988310                         13344445543  5899999776

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.65  E-value=0.0052  Score=49.44  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhc---CCccEEEEcCC
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALG---KSLDFIIDTAS  253 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~v~d~~g  253 (299)
                      ++||.|+ |.+|...++.+. .|++|++++++++           ....|..+.+.+.++-   +++|+++.++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQVGKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence            7999998 999999999888 8999999998754           1223444544443331   46899999987

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.64  E-value=0.01  Score=50.57  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEE
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++..... ..+++++|+|+|+.|.+++..+...|+ +|+++.|+.++.+.+.++++.+ . ... .    . ...+|+|
T Consensus       109 ~~l~~~~~-~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~-~~~-~----~-~~~~Div  179 (271)
T 1npy_A          109 KLIEKYHL-NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-Y-INS-L----E-NQQADIL  179 (271)
T ss_dssp             HHHHHTTC-CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-E-ESC-C----T-TCCCSEE
T ss_pred             HHHHHhCC-CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-c-chh-h----h-cccCCEE
Confidence            34444333 466889999999999999999999998 8999999998888887777752 2 111 0    0 2579999


Q ss_pred             EEcCCCchhH-------HHHHHhcccCcEEEEEcC
Q 022313          249 IDTASGDHPF-------DAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       249 ~d~~g~~~~~-------~~~~~~l~~~G~~v~~g~  276 (299)
                      ++++......       ......++++..++++-.
T Consensus       180 InaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY  214 (271)
T 1npy_A          180 VNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA  214 (271)
T ss_dssp             EECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCC
T ss_pred             EECCCCCccCccccCCCCCCHHHcCCCCEEEEeec
Confidence            9998854310       011245666777777754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.63  E-value=0.013  Score=50.52  Aligned_cols=92  Identities=22%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-----hHHHHHH--HhcCCCEE-EeCCCHHHHHHhcCCccEEEEc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-----SKKEEAL--SLLGADKF-VVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-----~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      ..+|||.|+ |.+|...++.+...|.+|++++|+.     ++.+.+.  +..+.+.+ .|..+.+.+.+.-.++|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            357999998 9999999999998999999999984     3333321  12244322 2555666776666789999999


Q ss_pred             CCCc------hhHHHHHHhcccCc---EEE
Q 022313          252 ASGD------HPFDAYMSLLKVAG---VYV  272 (299)
Q Consensus       252 ~g~~------~~~~~~~~~l~~~G---~~v  272 (299)
                      ++..      .....+++.++..|   +++
T Consensus        84 a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           84 LAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             CCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            8853      12444555555444   666

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.63  E-value=0.0015  Score=55.26  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCc---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGD---  255 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~---  255 (299)
                      ++ +++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++.   ....   .+.+...++|+|++++...   
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~~---~~~~~~~~aDiVInatp~gm~p  180 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSLD---QLDEVVKKAKSLFNTTSVGMKG  180 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEGG---GHHHHHHTCSEEEECSSTTTTS
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCHH---HHHhhhcCCCEEEECCCCCCCC
Confidence            46 89999999999999999999998 999999998887766444432   2222   2233345799999988531   


Q ss_pred             --hhHHHHHHhcccCcEEEEEcC
Q 022313          256 --HPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       256 --~~~~~~~~~l~~~G~~v~~g~  276 (299)
                        ..+  ....++++..++++-.
T Consensus       181 ~~~~i--~~~~l~~~~~V~Divy  201 (253)
T 3u62_A          181 EELPV--SDDSLKNLSLVYDVIY  201 (253)
T ss_dssp             CCCSC--CHHHHTTCSEEEECSS
T ss_pred             CCCCC--CHHHhCcCCEEEEeeC
Confidence              111  1244667777776643

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.63  E-value=0.0064  Score=50.44  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc-CCC-EE--EeCCCHHHHHHhc-------C--
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL-GAD-KF--VVSSDLEQMKALG-------K--  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~-g~~-~v--~~~~~~~~~~~~~-------~--  243 (299)
                      +++++||.|+ |++|...++.+...|  ++|++++++.++.+.+ ++. +.. .+  .|..+.+.+.++-       +  
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH-HhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            3578999988 999999999999999  9999999998877766 344 222 22  2444444443321       2  


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++|.++|.
T Consensus        81 ~id~li~~Ag~   91 (250)
T 1yo6_A           81 GLSLLINNAGV   91 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            89999999873

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.62  E-value=0.0076  Score=51.52  Aligned_cols=76  Identities=22%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC----------------chHHHHHHHh---cCCCE-E--EeCCCH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS----------------TSKKEEALSL---LGADK-F--VVSSDL  235 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~----------------~~~~~~~~~~---~g~~~-v--~~~~~~  235 (299)
                      -.++++||.|+ +++|...++.+...|++|++++++                .++.+.+.++   .+... .  .|..+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            36789999998 899999999999999999999876                4454444333   23222 2  244455


Q ss_pred             HHHHHh-------cCCccEEEEcCCC
Q 022313          236 EQMKAL-------GKSLDFIIDTASG  254 (299)
Q Consensus       236 ~~~~~~-------~~~~d~v~d~~g~  254 (299)
                      +.++++       .+++|++++++|.
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            444432       2589999999983

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.62  E-value=0.0072  Score=50.17  Aligned_cols=74  Identities=18%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh-----
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGL-------NVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL-----  241 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~-------~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-----  241 (299)
                      ++++||.|+ |++|...++.+...|+       +|+++++++++.+.+.+++   +.. .+  .|..+.+.+.++     
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            568999998 9999999998888899       9999999988776664443   322 12  244454444332     


Q ss_pred             --cCCccEEEEcCCC
Q 022313          242 --GKSLDFIIDTASG  254 (299)
Q Consensus       242 --~~~~d~v~d~~g~  254 (299)
                        .+++|+++.++|.
T Consensus        82 ~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HhCCCCCEEEEcCCc
Confidence              2589999999883

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.62  E-value=0.0037  Score=55.43  Aligned_cols=88  Identities=27%  Similarity=0.394  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|++|.|+|.|.+|...++.++..|.+|++++++.. .+.+ .+.|.+.+   .   .+.++....|+|+.++....   
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~-~~~g~~~~---~---~l~ell~~aDiV~l~~Plt~~t~  230 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERA-RADGFAVA---E---SKDALFEQSDVLSVHLRLNDETR  230 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHH-HHTTCEEC---S---SHHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHH-HhcCceEe---C---CHHHHHhhCCEEEEeccCcHHHH
Confidence            578999999999999999999999999999998753 3333 46676422   1   22333355899998876432   


Q ss_pred             --hHHHHHHhcccCcEEEEEc
Q 022313          257 --PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g  275 (299)
                        .-...+..|+++..++.++
T Consensus       231 ~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          231 SIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             TCBCHHHHTTSCTTCEEEECS
T ss_pred             HhhCHHHHhhCCCCcEEEECC
Confidence              2346788999999999987

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.62  E-value=0.0075  Score=51.31  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-------------CchHHHHHHH---hcCCCEE---EeCCCHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-------------STSKKEEALS---LLGADKF---VVSSDLEQM  238 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-------------~~~~~~~~~~---~~g~~~v---~~~~~~~~~  238 (299)
                      -.++++||.|+ +++|...++.+...|++|+++++             +.++.+...+   ..+....   .|..+.+.+
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            46789999998 89999999999999999999987             4444444332   2333222   244455444


Q ss_pred             HHh-------cCCccEEEEcCCC
Q 022313          239 KAL-------GKSLDFIIDTASG  254 (299)
Q Consensus       239 ~~~-------~~~~d~v~d~~g~  254 (299)
                      .++       .+++|++++++|.
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            332       2689999999984

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.62  E-value=0.019  Score=50.78  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhc-CCCEE-Ee-CCCHHHHHHhcCCccEEEEcCCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKK--EEALSLL-GADKF-VV-SSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~--~~~~~~~-g~~~v-~~-~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      +.+|||.|+ |.+|...++.+...|.+|+++++++++.  +.+ .+. +.+.+ .| ..+.+.+.+.-.++|+||.+.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l-~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL-QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHH-HTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHH-hhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            467999998 9999999998888899999999987664  333 222 23222 24 44666676666789999987764


Q ss_pred             c-----hhHHHHHHhcccC---cEEEEEcCC
Q 022313          255 D-----HPFDAYMSLLKVA---GVYVLVGFP  277 (299)
Q Consensus       255 ~-----~~~~~~~~~l~~~---G~~v~~g~~  277 (299)
                      .     .....+++.++..   ++++.++..
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            3     1123344444433   488888654

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.61  E-value=0.0021  Score=53.90  Aligned_cols=89  Identities=17%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhc----CCccEEEEcCCCch
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALG----KSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~----~~~d~v~d~~g~~~  256 (299)
                      +++||.|+ |++|...++.+...|++|+++++++++.+.       ....|..+.+.++++.    +++|++++++|...
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------ccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence            47899998 899999999999999999999988654321       0001111223333332    56799999988532


Q ss_pred             ------------------hHHHHHHhcccC--cEEEEEcCC
Q 022313          257 ------------------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 ------------------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                                        ..+.+++.++..  |+++.++..
T Consensus        75 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             CcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence                              134455555443  899999876

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.61  E-value=0.015  Score=50.15  Aligned_cols=76  Identities=21%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC------------chHHHHHH---HhcCCCEE---EeCCCHHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS------------TSKKEEAL---SLLGADKF---VVSSDLEQMK  239 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~v---~~~~~~~~~~  239 (299)
                      -+++++||.|+ +++|.+.++.+...|++|++++++            .++.+...   ++.+....   .|..+.+.+.
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            46789999998 899999999999999999999886            44444332   23443222   2444554443


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 022313          240 AL-------GKSLDFIIDTASG  254 (299)
Q Consensus       240 ~~-------~~~~d~v~d~~g~  254 (299)
                      ++       .+++|++++++|.
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCC
Confidence            32       2689999999883

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.60  E-value=0.0074  Score=51.72  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=62.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      .+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|...   ..+.   .+.....|+|+.++..+......
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~---~~~~---~~~~~~aDvvi~~vp~~~~~~~v   74 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-ALGAER---AATP---CEVVESCPVTFAMLADPAAAEEV   74 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEE---CSSH---HHHHHHCSEEEECCSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCee---cCCH---HHHHhcCCEEEEEcCCHHHHHHH
Confidence            4789999999999999999999999999999999988884 555421   1222   22223468899888865334444


Q ss_pred             H-------HhcccCcEEEEEcC
Q 022313          262 M-------SLLKVAGVYVLVGF  276 (299)
Q Consensus       262 ~-------~~l~~~G~~v~~g~  276 (299)
                      +       ..++++..++..+.
T Consensus        75 ~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           75 CFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             HHSTTCHHHHCCTTCEEEECSC
T ss_pred             HcCcchHhhcCCCCCEEEeCCC
Confidence            4       55667666666643

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.59  E-value=0.0063  Score=50.60  Aligned_cols=93  Identities=25%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh--------c-CCcc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL--------G-KSLD  246 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~--------~-~~~d  246 (299)
                      .+++++||.|+ |++|...++.+...|++|+++++++++.+.      ....+  |..+.+.+.++        . +++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS------ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS------EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccC------CcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            46789999998 899999999999999999999998754321      11111  22333333222        1 5899


Q ss_pred             EEEEcCCCc-------h-------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGD-------H-------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~-------~-------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++++|..       .                   ..+.+.+.++.+|+++.++..
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~  135 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  135 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCH
Confidence            999998831       0                   123344556667999999776

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.58  E-value=0.01  Score=50.91  Aligned_cols=92  Identities=21%  Similarity=0.150  Sum_probs=62.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-------hHHHHHH--HhcCCCEE-EeCCCHHHHHHhcCCccEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-------SKKEEAL--SLLGADKF-VVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .++|+|.|+ |.+|...++.+...|.+|++++|++       ++.+.+.  +..+.+.+ .|..+.+.+.+.-.++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            357999998 9999999999888899999999986       4443331  23354433 25556667766667899999


Q ss_pred             EcCCCc--hhHHHHHHhcccC---cEEE
Q 022313          250 DTASGD--HPFDAYMSLLKVA---GVYV  272 (299)
Q Consensus       250 d~~g~~--~~~~~~~~~l~~~---G~~v  272 (299)
                      .+++..  .....+++.++..   .+++
T Consensus        82 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           82 CAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             ECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             ECCcccccccHHHHHHHHHhcCCceEEe
Confidence            999853  2234445544433   3665

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.57  E-value=0.0016  Score=55.73  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEE
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .+++....--++++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.+++   ...   ..+.+.+....+|+|
T Consensus       106 ~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~---~~~---~~~~~~~~~~~aDiV  179 (277)
T 3don_A          106 NGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI---NKI---NLSHAESHLDEFDII  179 (277)
T ss_dssp             HHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC---EEE---CHHHHHHTGGGCSEE
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc---ccc---cHhhHHHHhcCCCEE
Confidence            344443322467899999999999999999999998 9999999988766552211   111   223344445679999


Q ss_pred             EEcCCCchhHHH-----HHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDHPFDA-----YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~~~~~-----~~~~l~~~G~~v~~g~~  277 (299)
                      +++++... ...     ....++++..++++-..
T Consensus       180 InaTp~Gm-~~~~~~~l~~~~l~~~~~V~D~vY~  212 (277)
T 3don_A          180 INTTPAGM-NGNTDSVISLNRLASHTLVSDIVYN  212 (277)
T ss_dssp             EECCC--------CCSSCCTTCCSSCEEEESCCS
T ss_pred             EECccCCC-CCCCcCCCCHHHcCCCCEEEEecCC
Confidence            99887432 111     13456777777777544

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.57  E-value=0.012  Score=49.30  Aligned_cols=75  Identities=21%  Similarity=0.176  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----hcCCCE-E--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS----LLGADK-F--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~-------~~~  244 (299)
                      +++++||.|+ |++|...++.+...|++|++++++.++.....+    +.+... .  .|..+.+.++++       .++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4678999998 999999999999999999999996554433222    224322 2  244454444332       257


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999884

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.57  E-value=0.01  Score=50.85  Aligned_cols=93  Identities=20%  Similarity=0.314  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc----CC-----------CEEEeCCCHHHHHHhc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL----GA-----------DKFVVSSDLEQMKALG  242 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~----g~-----------~~v~~~~~~~~~~~~~  242 (299)
                      .++++||.+|+|. |..+..+++. +. +|++++.+++-.+.+++.+    +.           -.++..+..+.+.. .
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            4568999998864 5666677776 54 9999999998888886655    21           12333332333444 6


Q ss_pred             CCccEEEEcCCC----------chhHHHHHHhcccCcEEEEE
Q 022313          243 KSLDFIIDTASG----------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       243 ~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +.||+|+-....          ...++.+.+.|+++|.++..
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            789999865442          33478889999999999875

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.57  E-value=0.0075  Score=50.37  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++.+||-+|+|. |..+..+++..+.+|+.++.+++..+.+.+.   .|..   .++..+-.+ .. ..+.||+|+.
T Consensus        33 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~V~~  109 (256)
T 1nkv_A           33 RMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YV-ANEKCDVAAC  109 (256)
T ss_dssp             CCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CC-CSSCEEEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CC-cCCCCCEEEE
Confidence            348899999999976 7788888988888999999998877766433   3421   222222111 11 1467999986


Q ss_pred             cCC------CchhHHHHHHhcccCcEEEEEc
Q 022313          251 TAS------GDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       251 ~~g------~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .-.      -...++.+.+.|+|+|+++...
T Consensus       110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          110 VGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            221      2234788889999999998764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.57  E-value=0.0063  Score=50.90  Aligned_cols=99  Identities=20%  Similarity=0.193  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHh---cCCCE-E--EeCCCHHHHHHh---------
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSL---LGADK-F--VVSSDLEQMKAL---------  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~---------  241 (299)
                      -+++++||.|+ +++|...++.+...|++|+++ .++.++.+...++   .+... .  .+..+.+.++.+         
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            35789999987 899999999999999999886 5666555544333   23221 1  233444333222         


Q ss_pred             ----cCCccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          242 ----GKSLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       242 ----~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                          .+++|++++++|..                         ...+.+++.++++|+++.++..
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~  149 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  149 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence                13599999998841                         0123344456678999999876

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.57  E-value=0.005  Score=51.02  Aligned_cols=92  Identities=23%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh--------c-CCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL--------G-KSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~--------~-~~~d~  247 (299)
                      +++++||.|+ |++|...++.+...|++|+++++++++.+.      ....+  |..+.+.+.++        . +++|+
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc------ccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            3578999998 899999999999999999999998765321      11121  22233333221        1 58999


Q ss_pred             EEEcCCCc--------h------------------hHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD--------H------------------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~--------~------------------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++++|..        .                  ..+.+.+.++.+|+++.++..
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99999831        0                  133455566667899998776

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.57  E-value=0.011  Score=56.34  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc---------hHHHHHHH---hcCCCEEEeCCCHH----HHHHh-
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST---------SKKEEALS---LLGADKFVVSSDLE----QMKAL-  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~---------~~~~~~~~---~~g~~~v~~~~~~~----~~~~~-  241 (299)
                      .++++||.|+ +++|++.++.+...|++|++.+++.         ++.+.+.+   +.|...+.+..+.+    .+++. 
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            5688999998 8999999999999999999987654         34433323   33544445554432    22222 


Q ss_pred             --cCCccEEEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          242 --GKSLDFIIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       242 --~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                        -+++|+++++.|-.                         .+.+.++..|+.  +|+++.+++.
T Consensus        87 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~  151 (604)
T 2et6_A           87 KNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSP  151 (604)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence              26899999999831                         124455566643  5899999776

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.57  E-value=0.0092  Score=50.63  Aligned_cols=76  Identities=22%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHH---hcCCCE-E--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST-STSKKEEALS---LLGADK-F--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++ +.+..+.+.+   +.+... .  .|..+.+.+.++       .+
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35788999987 89999999999999999999888 4444444332   334322 2  244455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus       106 ~id~lv~nAg~  116 (269)
T 4dmm_A          106 RLDVLVNNAGI  116 (269)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999984

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.57  E-value=0.011  Score=49.46  Aligned_cols=98  Identities=16%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCe-EEEEeCCc--hHHHHHHHhcCCCE--E--EeCCCH-HHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLN-VTVLSTST--SKKEEALSLLGADK--F--VVSSDL-EQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~-v~~~~~~~--~~~~~~~~~~g~~~--v--~~~~~~-~~~~~~-------~~  243 (299)
                      ++++++|.|+ |++|...++.+...|++ |+++++++  +..+++.+..+...  +  .|..+. +.+.++       .+
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            4688999987 99999999999999996 99999876  34445533332111  2  233333 333322       25


Q ss_pred             CccEEEEcCCCc-----------------hhHHHHHHhccc-----CcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-----------------HPFDAYMSLLKV-----AGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-----------------~~~~~~~~~l~~-----~G~~v~~g~~  277 (299)
                      ++|++++++|..                 ...+.+++.+..     +|+++.++..
T Consensus        84 ~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence            899999999831                 113334444433     5889998776

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.56  E-value=0.01  Score=49.17  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhc-----CCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALG-----KSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-----~~~  245 (299)
                      .++++||-+|+| .|..++.+++..  +.+++.++.+++..+.+++.+   |..   .++..+..+.+.++.     +.|
T Consensus        71 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           71 TGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             HTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred             cCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            567789999987 688888999876  469999999988877764433   432   233333333344442     679


Q ss_pred             cEEEEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+||-.....   ..++.+.+.|+++|.++.--..
T Consensus       150 D~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          150 DLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             CEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999554422   2477888999999999875444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.54  E-value=0.0026  Score=55.89  Aligned_cols=89  Identities=16%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|++|.|+|.|.+|...++.++..|.+|++++++....+.. +++|...    .+   +.++....|+|+.++....   
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~----~~---l~ell~~aDvV~l~~P~t~~t~  215 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-QRLGLRQ----VA---CSELFASSDFILLALPLNADTL  215 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-HHHTEEE----CC---HHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-HhcCcee----CC---HHHHHhhCCEEEEcCCCCHHHH
Confidence            57899999999999999999999999999999987544444 3556422    12   2233345788888877321   


Q ss_pred             --hHHHHHHhcccCcEEEEEcC
Q 022313          257 --PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g~  276 (299)
                        .-...+..|+++..++.++-
T Consensus       216 ~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          216 HLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHhCHHHHhhCCCCcEEEECCC
Confidence              22467788888888888763

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.53  E-value=0.0052  Score=53.74  Aligned_cols=91  Identities=20%  Similarity=0.279  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLST-STSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|+++++ +.+.. .+ +++|... .  .+   +.++....|+|+.++.... 
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-~~~g~~~-~--~~---l~ell~~aDvVil~~p~~~~  215 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DE-ASYQATF-H--DS---LDSLLSVSQFFSLNAPSTPE  215 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HH-HHHTCEE-C--SS---HHHHHHHCSEEEECCCCCTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hh-hhcCcEE-c--CC---HHHHHhhCCEEEEeccCchH
Confidence            4678999999999999999999999999999998 76653 33 4567632 1  12   2233346899999887532 


Q ss_pred             ---hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 ---PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ---~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                         .+ ...+..++++..++.++..
T Consensus       216 t~~~i~~~~l~~mk~gailIn~arg  240 (320)
T 1gdh_A          216 TRYFFNKATIKSLPQGAIVVNTARG  240 (320)
T ss_dssp             TTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             HHhhcCHHHHhhCCCCcEEEECCCC
Confidence               12 4567889998888888654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.53  E-value=0.0074  Score=53.10  Aligned_cols=90  Identities=23%  Similarity=0.384  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.+.+|.|+|.|.+|...++.++..|.+|++++++.+. +.+ +++|...    .+.   .++....|+|+.++....  
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~l---~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE-RELNAEF----KPL---EDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHHCCEE----CCH---HHHHHHCSEEEECCCCCTTT
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH-hhcCccc----CCH---HHHHhhCCEEEECCCCChHH
Confidence            46789999999999999999999999999999998876 444 4566521    122   223345799999887643  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+ ...+..++++..++.++..
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~srg  242 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIARG  242 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCC
Confidence              12 4567888998888877633

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.53  E-value=0.013  Score=46.13  Aligned_cols=97  Identities=13%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC-C--EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA-D--KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~-~--~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +.++.+||-+|+|. |..+..+++.. .++++++.+++..+.+.+.   .+. .  .++..+-.+.+.. ...+|+|+..
T Consensus        31 ~~~~~~vldiG~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~  107 (192)
T 1l3i_A           31 PGKNDVAVDVGCGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-IPDIDIAVVG  107 (192)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-SCCEEEEEES
T ss_pred             CCCCCEEEEECCCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-CCCCCEEEEC
Confidence            48889999999976 77888887766 8999999998887776443   333 1  2333221221211 1579999976


Q ss_pred             CCC---chhHHHHHHhcccCcEEEEEcCC
Q 022313          252 ASG---DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~---~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...   ...+..+.+.|+++|+++.....
T Consensus       108 ~~~~~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A          108 GSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             CCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             CchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            442   23477788999999999876543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.52  E-value=0.015  Score=49.41  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC------------chHHHHHH---HhcCCCEE---EeCCCHHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS------------TSKKEEAL---SLLGADKF---VVSSDLEQMK  239 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~v---~~~~~~~~~~  239 (299)
                      -+++++||.|+ +++|.+.++.+...|++|++++++            .++.+...   ++.+....   .|..+.+.+.
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            35789999987 899999999999999999999986            33333322   33443322   2444554443


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 022313          240 AL-------GKSLDFIIDTASG  254 (299)
Q Consensus       240 ~~-------~~~~d~v~d~~g~  254 (299)
                      ++       .+++|++++++|.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            32       2589999999983

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.52  E-value=0.016  Score=49.39  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHhcC-CccEEEEcCCCchh
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKALGK-SLDFIIDTASGDHP  257 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~-~~d~v~d~~g~~~~  257 (299)
                      .+|.|+|.|.+|...++.+...|.  +|+++++++++.+.+ ++.|.. ....  +   ..+... ..|+|+.++.....
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-~~~g~~~~~~~--~---~~~~~~~~aDvVilavp~~~~   75 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTT--S---IAKVEDFSPDFVMLSSPVRTF   75 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEES--C---GGGGGGTCCSEEEECSCHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-HHCCCcccccC--C---HHHHhcCCCCEEEEcCCHHHH
Confidence            368999999999999999998887  899999998888877 577753 2221  1   112335 79999999987652


Q ss_pred             ---HHHHHHhcccCcEEEEEcCC
Q 022313          258 ---FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ---~~~~~~~l~~~G~~v~~g~~  277 (299)
                         +......++++..++.++..
T Consensus        76 ~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           76 REIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHHhhCCCCcEEEECCCC
Confidence               22333456777777766543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.52  E-value=0.011  Score=47.95  Aligned_cols=97  Identities=16%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ...+.++.+||-+|+|. |..+..+++. +.+++.++.+++..+.+. +.+..  .++..+- ... ...+.||+|+...
T Consensus        41 l~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~d~-~~~-~~~~~~D~v~~~~  115 (218)
T 3ou2_A           41 LRAGNIRGDVLELASGT-GYWTRHLSGL-ADRVTALDGSAEMIAEAG-RHGLDNVEFRQQDL-FDW-TPDRQWDAVFFAH  115 (218)
T ss_dssp             HTTTTSCSEEEEESCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHG-GGCCTTEEEEECCT-TSC-CCSSCEEEEEEES
T ss_pred             HhcCCCCCeEEEECCCC-CHHHHHHHhc-CCeEEEEeCCHHHHHHHH-hcCCCCeEEEeccc-ccC-CCCCceeEEEEec
Confidence            33357888999999875 7777777777 889999999998888884 45522  2222221 111 2246899998654


Q ss_pred             CC--------chhHHHHHHhcccCcEEEEEcC
Q 022313          253 SG--------DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       253 g~--------~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      .-        ...++.+.+.|+++|+++....
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            31        2347778899999999987754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.51  E-value=0.013  Score=51.13  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCC---------CEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGA---------DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .+.++||++|+|. |..+..+++..+ .+|++++.+++-.+.+++.+..         -.++..+..+.+....+.||+|
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence            4568999998864 566667777653 5999999999888888665531         1233232233344445789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-....          ...++.+.+.|+++|.++.-.
T Consensus       186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            865421          345788899999999998753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.49  E-value=0.0078  Score=52.15  Aligned_cols=102  Identities=20%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhcCCccE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~  247 (299)
                      ....++++++||-+|+|. |..+..+++..+++|+.++.+++..+.+.+.   .|..   .++..+- ..+....+.||+
T Consensus       111 ~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~  188 (312)
T 3vc1_A          111 HLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDTPFDKGAVTA  188 (312)
T ss_dssp             TSCCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEE
T ss_pred             HhccCCCCCEEEEecCCC-CHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcCCCCCCCEeE
Confidence            334358899999999875 7777888887788999999998887776433   3321   2222221 111111367999


Q ss_pred             EEEc-----CCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDT-----ASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~-----~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+..     .+-...++.+.+.|+++|+++.....
T Consensus       189 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          189 SWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            9863     22234588899999999999977543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.49  E-value=0.013  Score=50.17  Aligned_cols=75  Identities=24%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-------HHHHH---HhcCCCE-E--EeCCCHHHHHHh----
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-------KEEAL---SLLGADK-F--VVSSDLEQMKAL----  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-------~~~~~---~~~g~~~-v--~~~~~~~~~~~~----  241 (299)
                      +++++||.|+ +++|...++.+...|++|++++++.++       .++..   ++.+... .  .|..+.+.+.++    
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5789999998 899999999999999999999998762       22222   2334322 2  244555444332    


Q ss_pred             ---cCCccEEEEcCCC
Q 022313          242 ---GKSLDFIIDTASG  254 (299)
Q Consensus       242 ---~~~~d~v~d~~g~  254 (299)
                         .+++|++++++|.
T Consensus        88 ~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           88 VEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               2589999999983

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.48  E-value=0.0079  Score=51.91  Aligned_cols=95  Identities=20%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++||++|+|. |..+..+++..+ .+|++++.+++..+.+++.+.         .-.++..+..+.+....+.||+|
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  167 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  167 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence            4558999998764 556667777654 599999999988877755441         12233332222233334679999


Q ss_pred             EEcCCC-----------chhHHHHHHhcccCcEEEEE
Q 022313          249 IDTASG-----------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       249 ~d~~g~-----------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +-....           ...++.+.+.|+++|.++..
T Consensus       168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            853322           23578888999999999886

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.47  E-value=0.0077  Score=51.73  Aligned_cols=44  Identities=18%  Similarity=0.037  Sum_probs=37.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHHh
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALSL  223 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~~  223 (299)
                      +++++||.|+ |++|...++.+...|++|++++ +++++.+.+.++
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~   53 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   53 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence            5688999987 8999999999999999999999 988776655443

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.47  E-value=0.01  Score=51.81  Aligned_cols=74  Identities=20%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC---------CchHHHHHHHh---cCCCEEEeCCCHHHHHH----h-
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST---------STSKKEEALSL---LGADKFVVSSDLEQMKA----L-  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~---------~~~~~~~~~~~---~g~~~v~~~~~~~~~~~----~-  241 (299)
                      .++++||.|+ |++|...++.+...|++|++.++         +.++.+.+.++   .+...+.+..+.+.+.+    + 
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            5788999998 89999999999999999999754         45555443333   34444456555433222    1 


Q ss_pred             --cCCccEEEEcCC
Q 022313          242 --GKSLDFIIDTAS  253 (299)
Q Consensus       242 --~~~~d~v~d~~g  253 (299)
                        .+++|++|++.|
T Consensus        88 ~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           88 DTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHTSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence              368999999998

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.47  E-value=0.0038  Score=51.97  Aligned_cols=96  Identities=17%  Similarity=0.037  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EEEeCCCHHHHHHh-cCCccEE-EEcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KFVVSSDLEQMKAL-GKSLDFI-IDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~-~~~~d~v-~d~~  252 (299)
                      .+|.+||-+|+|. |..+..+++..+.++++++.+++-.+.+++..   +.. .++..+-.+....+ .+.||.| +|..
T Consensus        59 ~~G~rVLdiG~G~-G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGM-AIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCc-cHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            7899999999974 77788888876779999999998888775433   222 22222222222222 3579988 4544


Q ss_pred             CCc----------hhHHHHHHhcccCcEEEEEc
Q 022313          253 SGD----------HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       253 g~~----------~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ...          ..++.+.+.|+|||+++...
T Consensus       138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            321          23567889999999998764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.47  E-value=0.014  Score=49.98  Aligned_cols=96  Identities=17%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCC---------CEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGA---------DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++||++|+|. |..+..+++.. ..++++++.+++-.+.+++.+..         -.++..+..+.+....+.||+|
T Consensus        77 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           77 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            4668999998753 55566666655 35999999999888888665542         1333333333344445789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-....          ...++.+.+.|+++|.++...
T Consensus       156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            863321          245778889999999998774

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.46  E-value=0.023  Score=49.46  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCC-----CEEEeCCCHHHHHHh-cCCccEEEEcCCC
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGA-----DKFVVSSDLEQMKAL-GKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~-~~~~d~v~d~~g~  254 (299)
                      .+||++|+|. |..+..+++.. +.+|++++.+++-.+.+++.++.     -.++..+-.+.+... .+.||+|+-....
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            3899999864 66777777754 66999999999988888766753     133333333444444 3689999864321


Q ss_pred             ----------chhHHHHHHhcccCcEEEEEc
Q 022313          255 ----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       255 ----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                                ...++.+.+.|+++|.++..-
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence                      234788899999999987653

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.46  E-value=0.02  Score=48.56  Aligned_cols=75  Identities=23%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-------HHHHH---HhcCCCE---EEeCCCHHHHHHh----
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-------KEEAL---SLLGADK---FVVSSDLEQMKAL----  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-------~~~~~---~~~g~~~---v~~~~~~~~~~~~----  241 (299)
                      +++++||.|+ +++|...++.+...|++|++++++.++       .+...   +..+...   ..|..+.+.+.++    
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999998 899999999999999999999998653       22222   2234322   1244455444332    


Q ss_pred             ---cCCccEEEEcCCC
Q 022313          242 ---GKSLDFIIDTASG  254 (299)
Q Consensus       242 ---~~~~d~v~d~~g~  254 (299)
                         .+++|++++++|.
T Consensus        85 ~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           85 VDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence               2689999999984

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.46  E-value=0.0045  Score=52.09  Aligned_cols=72  Identities=22%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-E--EeCCCHHHHHHh------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-F--VVSSDLEQMKAL------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~------~~~~d~v~  249 (299)
                      +++++||.|+ +++|...++.+...|++|+++++..++..   ++++... .  .|..+.+.+.++      .+++|+++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---ADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---HhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            5688999998 89999999999999999999998654432   4455322 2  244455444332      25899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      +++|.
T Consensus        85 ~nAg~   89 (257)
T 3tl3_A           85 NCAGT   89 (257)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99983

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.45  E-value=0.019  Score=49.04  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=62.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc------------CCC---------EEEeCCCHHHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL------------GAD---------KFVVSSDLEQMKA  240 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~------------g~~---------~v~~~~~~~~~~~  240 (299)
                      ++|.|+|+|.+|...++.+...|.+|+++++++++.+.+.+.+            +.+         .+...   ..+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~---~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS---DDLAQ   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE---SCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe---CCHHH
Confidence            5799999999999999999999999999999998877764331            110         00001   11223


Q ss_pred             hcCCccEEEEcCCCch-----hHHHHHHhcccCcEEEEEcC
Q 022313          241 LGKSLDFIIDTASGDH-----PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       241 ~~~~~d~v~d~~g~~~-----~~~~~~~~l~~~G~~v~~g~  276 (299)
                      ...+.|+|++++....     .+......++++..++....
T Consensus        82 ~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS  122 (283)
T 4e12_A           82 AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSS  122 (283)
T ss_dssp             HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            3468999999999752     24445556667666655443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.44  E-value=0.0087  Score=51.45  Aligned_cols=87  Identities=21%  Similarity=0.238  Sum_probs=62.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYM  262 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  262 (299)
                      +|.|+|+|.+|...+..+...|.+|+++++++++.+.+. +.|...   ..+.+   +.....|+|+.++..+.....++
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~~~~---~~~~~~D~vi~~v~~~~~~~~~~   79 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAET---ASTAK---AIAEQCDVIITMLPNSPHVKEVA   79 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE---CSSHH---HHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCee---cCCHH---HHHhCCCEEEEECCCHHHHHHHH
Confidence            699999999999999888888999999999988888774 446421   22222   22235899999998654344444


Q ss_pred             -------HhcccCcEEEEEcC
Q 022313          263 -------SLLKVAGVYVLVGF  276 (299)
Q Consensus       263 -------~~l~~~G~~v~~g~  276 (299)
                             ..++++..++.+..
T Consensus        80 ~~~~~l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           80 LGENGIIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HSTTCHHHHCCTTCEEEECSC
T ss_pred             hCcchHhhcCCCCCEEEECCC
Confidence                   55677777776643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.43  E-value=0.0084  Score=52.29  Aligned_cols=72  Identities=22%  Similarity=0.241  Sum_probs=52.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .+|||.|+ |.+|...++.+...|.+|++++++..+.+.+ ...+.+.+ .|..+.+.+.++-.++|+||.+++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL-AYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG-GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh-ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            47999998 9999999999998999999999987655433 22243322 2455666777766789999999874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.43  E-value=0.033  Score=46.60  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHh------cCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKAL------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~------~~~  244 (299)
                      .++++||-+|+|. |..++.+++..  +.+++.++.+++..+.+++.   .|..   .++..+..+.+..+      .+.
T Consensus        78 ~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           78 INAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             TTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hCcCEEEEeCCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            5667899999863 77788888876  57999999999877766433   3432   23333333444444      467


Q ss_pred             ccEEEEcCCC---chhHHHHHHhcccCcEEEEEcC
Q 022313          245 LDFIIDTASG---DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       245 ~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      ||+||-....   ...+..+.+.|+++|.++.-..
T Consensus       157 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          157 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             EEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            9999865443   2347788899999999986543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.43  E-value=0.0082  Score=52.58  Aligned_cols=44  Identities=18%  Similarity=0.037  Sum_probs=37.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHHh
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALSL  223 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~~  223 (299)
                      +++++||.|+ |++|...++.+...|++|++++ +++++.+.+.++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~   90 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   90 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            4678999987 8999999999999999999999 988777665443

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.42  E-value=0.0059  Score=52.12  Aligned_cols=92  Identities=18%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -++.+++|+|+|.+|.+.+..+...|++|+++.++.++.+.+.+++|.. +.+  +   +.+.....|+|+.+++.....
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~-~~~--~---~~~~~~~aDiVi~atp~~~~~  200 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE-VVN--S---PEEVIDKVQVIVNTTSVGLKD  200 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEE-ECS--C---GGGTGGGCSEEEECSSTTSST
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCe-eeh--h---HHhhhcCCCEEEEeCCCCCCC
Confidence            4578999999999999999999988999999999988887776666632 211  1   122335789999999865310


Q ss_pred             ---HH-HHHhcccCcEEEEEcC
Q 022313          259 ---DA-YMSLLKVAGVYVLVGF  276 (299)
Q Consensus       259 ---~~-~~~~l~~~G~~v~~g~  276 (299)
                         .. ....++++..++++..
T Consensus       201 ~~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          201 EDPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             TCCCSSCGGGCCTTSEEEESSS
T ss_pred             CCCCCCCHHHcCCCCEEEEcCC
Confidence               00 1345777777777765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.42  E-value=0.017  Score=49.52  Aligned_cols=73  Identities=22%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchHH--HHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSKK--EEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~~--~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .++|||.|+ |.+|...++.+...| .+|++++|++++.  +.+ ...+.+.+ .|..+.+.+.+.-.++|+||.+++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL-RLQGAEVVQGDQDDQVIMELALNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHH-HHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCC
Confidence            468999998 999999998888878 8999999987654  223 33454433 2555667777666789999999873

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.41  E-value=0.013  Score=49.70  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHH---HhcCCCE-EE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEAL---SLLGADK-FV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~---~~~g~~~-v~--~~~~~~~~~~~-------~~  243 (299)
                      -+++++||.|+ |++|...++.+...|++|++++++.++ .+.+.   ++.+... ++  |..+.+.+.++       .+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            36789999988 899999999999999999999995443 33332   2334322 22  34444443332       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.++|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999984

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.41  E-value=0.0073  Score=53.04  Aligned_cols=90  Identities=22%  Similarity=0.358  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.+.+|.|+|.|.+|...++.++..|.+|++++++.++.+.+ +++|....    +.   .++....|+|+.++....  
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~l---~e~l~~aDvVi~~vp~~~~t  224 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFV----ST---PELAAQSDFIVVACSLTPAT  224 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEEC----CH---HHHHHHCSEEEECCCCCTTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeC----CH---HHHHhhCCEEEEeCCCChHH
Confidence            357899999999999999999999999999999887666555 45564321    22   222245789988887532  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~  276 (299)
                        .+ ...+..++++..++.++.
T Consensus       225 ~~~i~~~~~~~mk~gailIn~sr  247 (330)
T 2gcg_A          225 EGLCNKDFFQKMKETAVFINISR  247 (330)
T ss_dssp             TTCBSHHHHHHSCTTCEEEECSC
T ss_pred             HHhhCHHHHhcCCCCcEEEECCC
Confidence              12 456678888887776654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.40  E-value=0.0083  Score=53.32  Aligned_cols=87  Identities=17%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|++|.|+|.|.+|...++.++.+|.+|++.++... .+.+ ++.|...    .   .+.++....|+|+.++....   
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~-~~~g~~~----~---~l~ell~~aDvV~l~~Plt~~T~  245 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSML-EENGVEP----A---SLEDVLTKSDFIFVVAAVTSENK  245 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHH-HHTTCEE----C---CHHHHHHSCSEEEECSCSSCC--
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHH-hhcCeee----C---CHHHHHhcCCEEEEcCcCCHHHH
Confidence            478999999999999999999999999999998753 3333 3566532    1   23444567899998776431   


Q ss_pred             --hHHHHHHhcccCcEEEEEc
Q 022313          257 --PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g  275 (299)
                        .-...+..|+++..++.++
T Consensus       246 ~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          246 RFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             -CCCHHHHHTSCTTCEEEECS
T ss_pred             hhcCHHHHhcCCCCcEEEECc
Confidence              2356778899999999887

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.40  E-value=0.013  Score=49.80  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHh------cCCc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKAL------GKSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~------~~~~  245 (299)
                      -+++++||.|+ |++|...++.+...|++|+++++.+.. ++..+++   +.. ..  .|..+.+.+.++      .+++
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGV-KEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHH-HHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHH-HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            46789999998 899999999999999999999976433 3322332   322 12  244454444332      1589


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus       108 D~lv~nAg~  116 (273)
T 3uf0_A          108 DVLVNNAGI  116 (273)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999884

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.40  E-value=0.011  Score=56.54  Aligned_cols=99  Identities=16%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeC---------CchHHHHHH---HhcCCCEEEeCCCHHHHHHh----
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLST---------STSKKEEAL---SLLGADKFVVSSDLEQMKAL----  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~---------~~~~~~~~~---~~~g~~~v~~~~~~~~~~~~----  241 (299)
                      -.++++||.|+ +++|.+.++.+...|++|+++++         +.++.+.+.   ++.+...+.+..+.+.+.++    
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC--
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Confidence            36788999988 89999999999999999999876         444443332   23455555566555433332    


Q ss_pred             ---cCCccEEEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          242 ---GKSLDFIIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       242 ---~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                         -+++|++++++|..                         ...+.++..|+.  +|+++.+++.
T Consensus        97 ~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~  162 (613)
T 3oml_A           97 IKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSN  162 (613)
T ss_dssp             --------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCH
T ss_pred             HHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence               15799999999842                         123444555544  4899998765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.40  E-value=0.0099  Score=51.74  Aligned_cols=96  Identities=22%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---CCC--EEEeCCCHHHHHHhcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---GAD--KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g~~--~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+++.+   |..  .++..+-.+... ..+.||+|+
T Consensus        72 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv  149 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIF  149 (317)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEE
T ss_pred             CCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEE
Confidence            348999999999976 778888887653  46999999998887765432   432  222222111111 236799999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEE
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ....-......+.+.|+++|+++..
T Consensus       150 ~~~~~~~~~~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          150 VTVGVDEVPETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             ECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             EcCCHHHHHHHHHHhcCCCcEEEEE
Confidence            8766555567888999999998876

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.40  E-value=0.0083  Score=52.36  Aligned_cols=75  Identities=21%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cC-CCEEE--eCCCHHHHHHhc--CCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LG-ADKFV--VSSDLEQMKALG--KSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g-~~~v~--~~~~~~~~~~~~--~~~d~v~  249 (299)
                      .+.+|||.|+ |.+|...++.+...|++|++++++.+......++    .+ .-.++  |..+.+.+.++-  .++|+|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4578999998 9999999999999999999999876543332222    23 22222  444555555543  4899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      .+++.
T Consensus        84 h~A~~   88 (341)
T 3enk_A           84 HFAAL   88 (341)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            99985

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.40  E-value=0.0037  Score=52.68  Aligned_cols=95  Identities=21%  Similarity=0.244  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-EEEeCCCHHHHHHh-cCCccEEEEcC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-KFVVSSDLEQMKAL-GKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~-~~~~d~v~d~~  252 (299)
                      ++++++||-+|+|. |..++.+++ .|++|++++.++...+.+++.   .+.. .++..+-.+   .+ .+.||+|+.+.
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~---~~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVANL  192 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEEC
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh---cCcCCCCCEEEECC
Confidence            47889999999876 777777666 467999999999887776443   2332 333222112   13 46899999765


Q ss_pred             CCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          253 SGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...   ..+..+.+.|+++|+++..+..
T Consensus       193 ~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          193 YAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            322   2467778899999999988755

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.40  E-value=0.0068  Score=52.08  Aligned_cols=95  Identities=16%  Similarity=0.084  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC---E---EEeCCCHHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD---K---FVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~---~---v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      -++++++|+|+|++|.+++..+...| +|+++.++.++.+.+.++++..   .   .++..+   +.+..+++|++++++
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~---~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG---LDVDLDGVDIIINAT  201 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC---TTCCCTTCCEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEee---HHHhhCCCCEEEECC
Confidence            46789999999999999999999999 9999999988777765554320   0   001111   122336799999999


Q ss_pred             CCchhHH-----H-HHHhcccCcEEEEEcCC
Q 022313          253 SGDHPFD-----A-YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~~~~~-----~-~~~~l~~~G~~v~~g~~  277 (299)
                      +......     . ....++++..++++...
T Consensus       202 g~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          202 PIGMYPNIDVEPIVKAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             CTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEeeeC
Confidence            8543100     0 23567777778887653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.39  E-value=0.021  Score=45.40  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHCC----------CeEEEEeCCchHHHHHHHhcCCCEEE-eCC--CHHHH---
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFG----------LNVTVLSTSTSKKEEALSLLGADKFV-VSS--DLEQM---  238 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g----------~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~--~~~~~---  238 (299)
                      ...++++++||-+|+|. |..+..+++..+          .+|++++.++...      ...-.++ ..+  +....   
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           17 HQILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------LEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             HCCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------CTTCEEECSCCTTSHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc------CCCCeEEEeccCCCHHHHHHH
Confidence            34458899999999987 888999999876          6899999886421      1112233 222  21111   


Q ss_pred             HH-h-cCCccEEEE-----cCCCc------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KA-L-GKSLDFIID-----TASGD------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~-~-~~~~d~v~d-----~~g~~------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+ . .+.||+|+.     +++..            ..+..+.+.|+++|+++..-..
T Consensus        90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            11 2 247999995     33321            3466788999999999876443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.39  E-value=0.013  Score=50.77  Aligned_cols=96  Identities=21%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++||++|+|. |..+..+++..+ .+|++++.+++-.+.+++.+.         .-.++..+..+.+....+.||+|
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            5668999998763 566667777654 599999999888877755442         12333333233344445789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-....          ...++.+.+.|+++|.++.-.
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            854332          235788899999999998653

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.39  E-value=0.0075  Score=50.77  Aligned_cols=86  Identities=16%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      -+|.|+|.|.+|...+..+...|..|.++++++++.+.+.+++|...   ..+.+   +.....|+|+.++.... ....
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~---~~~~~~D~Vi~~v~~~~-~~~v   76 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---AMSHQ---DLIDQVDLVILGIKPQL-FETV   76 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---CSSHH---HHHHTCSEEEECSCGGG-HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---eCCHH---HHHhcCCEEEEEeCcHh-HHHH
Confidence            36899999999999888888888899999999888888766667532   22222   22246899999998544 7777


Q ss_pred             HHhcccCcEEEEE
Q 022313          262 MSLLKVAGVYVLV  274 (299)
Q Consensus       262 ~~~l~~~G~~v~~  274 (299)
                      +..++++..++..
T Consensus        77 ~~~l~~~~~vv~~   89 (259)
T 2ahr_A           77 LKPLHFKQPIISM   89 (259)
T ss_dssp             HTTSCCCSCEEEC
T ss_pred             HHHhccCCEEEEe
Confidence            7777766655555

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.38  E-value=0.013  Score=50.86  Aligned_cols=89  Identities=20%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      -.+|.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|...   ..+.   .+.....|+||.++..+.....
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~---~~~~---~~~~~~aDvvi~~vp~~~~~~~   93 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDEL-VEHGASV---CESP---AEVIKKCKYTIAMLSDPCAALS   93 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-HHTTCEE---CSSH---HHHHHHCSEEEECCSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCeE---cCCH---HHHHHhCCEEEEEcCCHHHHHH
Confidence            3679999999999999999999999999999999998888 4666532   1221   1222346888888876543444


Q ss_pred             HH-------HhcccCcEEEEEcC
Q 022313          261 YM-------SLLKVAGVYVLVGF  276 (299)
Q Consensus       261 ~~-------~~l~~~G~~v~~g~  276 (299)
                      ++       ..++++..++..+.
T Consensus        94 v~~~~~~l~~~l~~g~~vv~~st  116 (310)
T 3doj_A           94 VVFDKGGVLEQICEGKGYIDMST  116 (310)
T ss_dssp             HHHSTTCGGGGCCTTCEEEECSC
T ss_pred             HHhCchhhhhccCCCCEEEECCC
Confidence            44       34556666666543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.38  E-value=0.0064  Score=49.26  Aligned_cols=94  Identities=17%  Similarity=0.067  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-----------------CEEEeCCCHHHHHH
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-----------------DKFVVSSDLEQMKA  240 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-----------------~~v~~~~~~~~~~~  240 (299)
                      +.++.+||-+|+|. |..+..+++. |++|+.++.+++-++.++++.+.                 -.++..+-. .+..
T Consensus        20 ~~~~~~vLD~GCG~-G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l~~   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGK-SQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-ALTA   96 (203)
T ss_dssp             CCTTCEEEETTTCC-SHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SSTH
T ss_pred             cCCCCEEEEeCCCC-cHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc-cCCc
Confidence            37889999999874 6677777776 88999999999988888655431                 112211110 1111


Q ss_pred             h-cCCccEEEEcCCC-----c---hhHHHHHHhcccCcEEEEE
Q 022313          241 L-GKSLDFIIDTASG-----D---HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       241 ~-~~~~d~v~d~~g~-----~---~~~~~~~~~l~~~G~~v~~  274 (299)
                      . .+.||+|++...-     .   ..++.+.+.|+|+|+++.+
T Consensus        97 ~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           97 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            1 1479999974321     1   1356788999999994333

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.38  E-value=0.019  Score=46.90  Aligned_cols=98  Identities=17%  Similarity=0.160  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhc-----CCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALG-----KSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-----~~~  245 (299)
                      .++.+||-+|+|. |..+..+++..  +.+|+.++.+++..+.+.+.+   |..   .++..+..+.+....     +.|
T Consensus        63 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           63 MQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            5678899999875 77888888875  569999999988777664433   432   233333334444443     689


Q ss_pred             cEEEEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+|+-.....   ..++.+.+.|+++|.++.-...
T Consensus       142 D~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          142 DLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             cEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9999655432   2467788999999999876544

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.38  E-value=0.0084  Score=52.95  Aligned_cols=76  Identities=13%  Similarity=0.059  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHH--CCCeEEEEeCCchHHH----------HHH--HhcCCCE-EEeCCCHHHHHHh-
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKA--FGLNVTVLSTSTSKKE----------EAL--SLLGADK-FVVSSDLEQMKAL-  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~--~g~~v~~~~~~~~~~~----------~~~--~~~g~~~-v~~~~~~~~~~~~-  241 (299)
                      -.+.+|||.|+ |.+|...++.+..  .|++|+++++......          ...  ...+... ..|..+.+.+.++ 
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence            35689999988 9999999999888  8999999998654111          000  0111221 2255566777777 


Q ss_pred             cCCccEEEEcCCC
Q 022313          242 GKSLDFIIDTASG  254 (299)
Q Consensus       242 ~~~~d~v~d~~g~  254 (299)
                      ..++|+||.+++.
T Consensus        88 ~~~~D~vih~A~~  100 (362)
T 3sxp_A           88 KLHFDYLFHQAAV  100 (362)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             ccCCCEEEECCcc
Confidence            6899999999984

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.37  E-value=0.018  Score=50.05  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC------------chHHHHHH---HhcCCCEE---EeCCCHHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS------------TSKKEEAL---SLLGADKF---VVSSDLEQMK  239 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~v---~~~~~~~~~~  239 (299)
                      -+++++||.|+ +++|...++.+...|++|++++++            .++.+...   ++.+....   .|..+.+.+.
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            46789999987 899999999999999999999875            34443332   23343322   2444554443


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 022313          240 AL-------GKSLDFIIDTASG  254 (299)
Q Consensus       240 ~~-------~~~~d~v~d~~g~  254 (299)
                      ++       .+++|++++++|.
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            32       2689999999983

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.37  E-value=0.011  Score=51.58  Aligned_cols=76  Identities=24%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC----------chHHHHHHHh---cCCCEEE---eCCCHHHHHHh
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS----------TSKKEEALSL---LGADKFV---VSSDLEQMKAL  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~----------~~~~~~~~~~---~g~~~v~---~~~~~~~~~~~  241 (299)
                      -.++++||.|+ +++|...++.+...|++|++++++          .++.+.+.++   .+.....   |..+.+.+.++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            46789999987 899999999999999999999887          4444444333   3432222   33444444332


Q ss_pred             -------cCCccEEEEcCCC
Q 022313          242 -------GKSLDFIIDTASG  254 (299)
Q Consensus       242 -------~~~~d~v~d~~g~  254 (299)
                             .+++|++++++|.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence                   2589999999984

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.36  E-value=0.015  Score=50.82  Aligned_cols=96  Identities=17%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCC---------CEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGA---------DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++++||.+|+|. |..+..+++.. +.+|++++.+++-.+.+++.+..         -+++..+-.+.+....+.||+|
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI  193 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  193 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence            4568999998764 55666777764 46999999999988888655542         1233333233344445789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-....          ...++.+.+.|+++|.++...
T Consensus       194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            854421          245788889999999998753

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.33  E-value=0.0051  Score=52.15  Aligned_cols=71  Identities=24%  Similarity=0.207  Sum_probs=49.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-------cCCccEEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      -.++++||.|+ |++|...++.+...|++|++++++.+..+.. ..+    ..+..+.+.+.++       .+++|++++
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~-~~~----~~Dv~~~~~~~~~~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD-LHL----PGDLREAAYADGLPGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS-EEC----CCCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh-hcc----CcCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            35789999988 8999999999999999999999876544322 111    1233343333222       268999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus       101 nAg~  104 (266)
T 3uxy_A          101 NAGV  104 (266)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.33  E-value=0.0095  Score=47.97  Aligned_cols=70  Identities=21%  Similarity=0.252  Sum_probs=51.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhc---CCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALG---KSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~---~~~d~v~d~~g~  254 (299)
                      +++||.|+ |.+|...++.+...  +|+++++++++.+.+.++++. .++  |..+.+.+.++-   +++|+++.+.|.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   76 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK   76 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            36899998 99999888877766  999999998887776555543 333  344455554443   489999999884

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.33  E-value=0.0053  Score=51.33  Aligned_cols=103  Identities=14%  Similarity=0.077  Sum_probs=69.6

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC---CEEEeCCCHHHHHHhcCC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA---DKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~---~~v~~~~~~~~~~~~~~~  244 (299)
                      .+.....++++.+||-+|+|. |..+..+++..+.+|+.++.++...+.+.+.   .|.   -.++..+- ..+....+.
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~  114 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGT-GGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEE  114 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTT-SHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTC
T ss_pred             HHHHHhcCCCCCeEEEeCCCC-CHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCC
Confidence            344444568889999999975 8888899998877999999998877766433   332   12222221 111111367


Q ss_pred             ccEEEEc-----CCCchhHHHHHHhcccCcEEEEEc
Q 022313          245 LDFIIDT-----ASGDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       245 ~d~v~d~-----~g~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ||+|+..     ......++.+.+.|+|+|+++...
T Consensus       115 fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          115 LDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999753     222335788889999999998775

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.33  E-value=0.016  Score=50.15  Aligned_cols=96  Identities=14%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHH-hcCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKA-LGKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~-~~~~~d~  247 (299)
                      .++++||++|+|. |..+..+++..+ .+|++++.+++-.+.+++.+.         .-.++..+-.+.... ..+.||+
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            5678999998864 566667777644 599999999888887755541         123333332233332 2467999


Q ss_pred             EEEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          248 IIDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       248 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      |+-....          ...++.+.+.|+++|.++...
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9864431          244778889999999998864

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.32  E-value=0.0075  Score=53.36  Aligned_cols=92  Identities=18%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHH-HCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGK-AFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH-  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~-~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~-  256 (299)
                      -.|++|.|+|.|.+|...++.++ ..|.+|++++++.++.+.+ +++|...+   .+.   .++....|+|+.++.... 
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~~l---~ell~~aDvVil~vp~~~~  233 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-KALGAERV---DSL---EELARRSDCVSVSVPYMKL  233 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-HHHTCEEC---SSH---HHHHHHCSEEEECCCCSGG
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-hhcCcEEe---CCH---HHHhccCCEEEEeCCCChH
Confidence            56789999999999999999999 9999999999987666555 35565321   122   222245788888876532 


Q ss_pred             ---hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 ---PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ---~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                         .+ ...+..++++..++.++..
T Consensus       234 t~~li~~~~l~~mk~gailin~srg  258 (348)
T 2w2k_A          234 THHLIDEAFFAAMKPGSRIVNTARG  258 (348)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHhhHHHHhcCCCCCEEEECCCC
Confidence               12 3466778887777766543

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.32  E-value=0.013  Score=49.19  Aligned_cols=75  Identities=16%  Similarity=0.093  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHH---CCCeEEEEeCCchHHHHHHHhc-----CCC-EE--EeCCCHHHHHHh----c-
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKA---FGLNVTVLSTSTSKKEEALSLL-----GAD-KF--VVSSDLEQMKAL----G-  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~---~g~~v~~~~~~~~~~~~~~~~~-----g~~-~v--~~~~~~~~~~~~----~-  242 (299)
                      +++++||.|+ |++|...++.+..   .|++|+++++++++.+.+.+++     +.. ..  .|..+.+.+.++    . 
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            4678999987 8999999988887   8999999999988777664443     322 12  244454443332    1 


Q ss_pred             ----CCcc--EEEEcCCC
Q 022313          243 ----KSLD--FIIDTASG  254 (299)
Q Consensus       243 ----~~~d--~v~d~~g~  254 (299)
                          +++|  +++++.|.
T Consensus        85 ~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             SCCCTTCCEEEEEECCCC
T ss_pred             ccccccCCccEEEECCcc
Confidence                3678  99998873

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.32  E-value=0.0085  Score=50.01  Aligned_cols=75  Identities=29%  Similarity=0.313  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC-chHHHHHHH---hcCCCEE---EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS-TSKKEEALS---LLGADKF---VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~-~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~-------~~~  244 (299)
                      .++++||.|+ |++|...++.+...|++|+++++. .++.+.+.+   +.+....   .|..+.+.++++       .++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999987 899999999999999999988774 344444333   3343322   244455444332       258


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 3osu_A           83 LDVLVNNAGI   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.30  E-value=0.0046  Score=53.93  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhcC--CccEEEEcCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALGK--SLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~--~~d~v~d~~g  253 (299)
                      -++.+|||.|+ |.+|...++.+...|++|++++++........+.+..-.++  +..+.+.+.++-.  ++|+||.+++
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   97 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA   97 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence            35678999998 99999999999888999999998654332111222211222  4445555555544  8999999988


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        98 ~   98 (330)
T 2pzm_A           98 A   98 (330)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.28  E-value=0.0068  Score=53.29  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.+++|.|+|.|.+|...++.++..|.+|++++++.+. +.+ +++|...    .+.   .++....|+|+.++....  
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~l---~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVE-KELKARY----MDI---DELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHH-HHHTEEE----CCH---HHHHHHCSEEEECCCCCTTT
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCcee----cCH---HHHHhhCCEEEEcCCCChHH
Confidence            46789999999999999999999999999999998876 433 3556421    122   222245788888887651  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~  276 (299)
                        .+ ...+..++++ .++.++.
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~sr  236 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGR  236 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSC
T ss_pred             HHHhCHHHHhhCCCC-EEEECCC
Confidence              12 3456778888 7766653

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.28  E-value=0.034  Score=46.69  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      +|.|+|+|.+|...+..+...| .+|+++++++++.+.+.+++|....-+..      +.. ..|+||.++. +.....+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~------~~~-~~D~vi~~v~-~~~~~~v   73 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP------ELH-SDDVLILAVK-PQDMEAA   73 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC------CCC-TTSEEEECSC-HHHHHHH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHH------HHh-cCCEEEEEeC-chhHHHH
Confidence            5889999999999888888888 89999999999888886666754221111      223 6788888888 4436666


Q ss_pred             HHhccc-CcEEEEE
Q 022313          262 MSLLKV-AGVYVLV  274 (299)
Q Consensus       262 ~~~l~~-~G~~v~~  274 (299)
                      ++.+.+ +..++.+
T Consensus        74 ~~~l~~~~~ivv~~   87 (263)
T 1yqg_A           74 CKNIRTNGALVLSV   87 (263)
T ss_dssp             HTTCCCTTCEEEEC
T ss_pred             HHHhccCCCEEEEe
Confidence            666643 3344444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.27  E-value=0.028  Score=47.71  Aligned_cols=86  Identities=19%  Similarity=0.109  Sum_probs=62.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-EEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-KFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      +|.|+|+|.+|...+..+...|.+|+++++++++.+.+ ++.|.. .+..  +   ..+. .+.|+|+.++.... ....
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~~~--~---~~~~-~~~D~vi~av~~~~-~~~~   73 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAGQ--D---LSLL-QTAKIIFLCTPIQL-ILPT   73 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEES--C---GGGG-TTCSEEEECSCHHH-HHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HhCCCCccccC--C---HHHh-CCCCEEEEECCHHH-HHHH
Confidence            58899999999999998888899999999998888887 467753 2221  1   2234 67999999998754 3333


Q ss_pred             H----HhcccCcEEEEEcC
Q 022313          262 M----SLLKVAGVYVLVGF  276 (299)
Q Consensus       262 ~----~~l~~~G~~v~~g~  276 (299)
                      +    ..++++..++.++.
T Consensus        74 ~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           74 LEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             HHHHGGGSCTTCEEEECCS
T ss_pred             HHHHHhhCCCCCEEEECCC
Confidence            3    34556666666643

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.27  E-value=0.0035  Score=52.22  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=56.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh----cCCccEEEEcCCCch
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL----GKSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----~~~~d~v~d~~g~~~  256 (299)
                      +++||.|+ |.+|...+..+...|++|+++++++++.+.       ....+..+.+.+.++    .+++|+++.++|...
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~   74 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGV   74 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCT
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------cccCCcccHHHHHHHHHHcCCCccEEEECCCCCC
Confidence            46899998 999999999998899999999988654210       000111112223222    258999999987432


Q ss_pred             ------------------hHHHHHHhcccC--cEEEEEcCC
Q 022313          257 ------------------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 ------------------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                                        ..+.+.+.++..  ++++.++..
T Consensus        75 ~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  115 (255)
T 2dkn_A           75 TAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSI  115 (255)
T ss_dssp             TSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             cchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecc
Confidence                              123333444333  899998766

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.27  E-value=0.0048  Score=54.68  Aligned_cols=75  Identities=17%  Similarity=0.102  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEE-EeCC-CHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKF-VVSS-DLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~-~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ...+|||.|+ |.+|...++.+... |.+|++++++.++...+.+.-+.+.+ .|.. +.+.+.++-.++|+||.+++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~  101 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI  101 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCcc
Confidence            3478999998 99999999988877 89999999998766554222233322 2444 556666555689999998874

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.26  E-value=0.02  Score=48.41  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEE-eCCchHHHHHHHh---cCCCE-EE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVL-STSTSKKEEALSL---LGADK-FV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~-v~--~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+ |++|...++.+...|++|+++ .++.+..+.+.++   .+... ++  |..+.+.+.++       .+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            45788999988 899999999999999999776 6666655554333   33222 22  44444444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.++|.
T Consensus       104 ~id~li~nAg~  114 (272)
T 4e3z_A          104 RLDGLVNNAGI  114 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999883

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.23  E-value=0.019  Score=50.13  Aligned_cols=74  Identities=16%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC-----chHHHHHH---HhcCCC-EE--EeCCCHHHHHHh------
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS-----TSKKEEAL---SLLGAD-KF--VVSSDLEQMKAL------  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~-----~~~~~~~~---~~~g~~-~v--~~~~~~~~~~~~------  241 (299)
                      +++++||.|+ |++|...++.+...|++|++++++     .++.+.+.   ++.+.. ..  .|..+.+.+.++      
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            3678999988 999999999999999999998775     23333332   223422 22  244454444332      


Q ss_pred             -cCCccEEEEcCC
Q 022313          242 -GKSLDFIIDTAS  253 (299)
Q Consensus       242 -~~~~d~v~d~~g  253 (299)
                       .+++|++++++|
T Consensus        84 ~~g~iD~lVnnAG   96 (324)
T 3u9l_A           84 EDGRIDVLIHNAG   96 (324)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             258999999998

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.23  E-value=0.015  Score=50.88  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .++++|||.|+ |.+|...++.+...|++|+++++++..       -+...+ .+..+.+.+.++-.++|+||.+++.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            56688999998 999999999999999999999998654       233332 2555666666666799999998874

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.22  E-value=0.021  Score=49.29  Aligned_cols=91  Identities=22%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHH--HhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEAL--SLLGADKF-VVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      ++|||.|+ |.+|...++.+...|.+|++++|+.. +.+.+.  +..+.+.+ .|..+.+.+.+.-.++|+||.+++...
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~~   91 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQ   91 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchhh
Confidence            46999998 99999999999999999999999874 332221  23454433 255566777776678999999988531


Q ss_pred             --hHHHHHHhcccC---cEEE
Q 022313          257 --PFDAYMSLLKVA---GVYV  272 (299)
Q Consensus       257 --~~~~~~~~l~~~---G~~v  272 (299)
                        ....+++.++..   .+++
T Consensus        92 ~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           92 ILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             STTHHHHHHHHHHHCCCCEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEE
Confidence              234444544433   3665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.22  E-value=0.034  Score=46.10  Aligned_cols=98  Identities=19%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHh------cCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKAL------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~------~~~  244 (299)
                      .++++||-+|+|. |..++.+++..  +.+++.++.+++..+.+++.   .|..   .++..+..+.+..+      .+.
T Consensus        69 ~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           69 VNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             TTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            5678899998863 67777888876  56999999998877766433   3532   23333333444444      467


Q ss_pred             ccEEEEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ||+||-.....   ..++.+.+.|+++|.++.-...
T Consensus       148 fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          148 YDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             cCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            99999655432   2477788999999998875433

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.21  E-value=0.035  Score=48.64  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch----HHHHHHHhc------CCCEE-EeCCCHHHHHHhcCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS----KKEEALSLL------GADKF-VVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~----~~~~~~~~~------g~~~v-~~~~~~~~~~~~~~~~d~  247 (299)
                      ++.+|||.|+ |.+|...++.+...|.+|++++++..    ..+.+.+.+      +...+ .|..+.+.+.++-.++|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            3568999998 99999999999989999999998653    333332222      22211 244556666666679999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      ||.+++.
T Consensus       106 vih~A~~  112 (352)
T 1sb8_A          106 VLHQAAL  112 (352)
T ss_dssp             EEECCSC
T ss_pred             EEECCcc
Confidence            9999984

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.21  E-value=0.0016  Score=58.02  Aligned_cols=129  Identities=13%  Similarity=0.056  Sum_probs=81.9

Q ss_pred             cccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCc-------hHHHHHHHhcCCCE
Q 022313          157 LAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTST-------SKKEEALSLLGADK  228 (299)
Q Consensus       157 ~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~-------~~~~~~~~~~g~~~  228 (299)
                      +..+....+.+.+.+++..+.--+..+|+|+|+|..|..+++++..+|+ +|+++++..       +++...++.|... 
T Consensus       164 iqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~-  242 (398)
T 2a9f_A          164 QHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKV-  242 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHH-
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhc-
Confidence            3334444555666677655543466789999999999999999999999 999998762       1122222222110 


Q ss_pred             EEe-CCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhh
Q 022313          229 FVV-SSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLN  288 (299)
Q Consensus       229 v~~-~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~  288 (299)
                       .+ ......+.+.-++.|++|-+++.....+..++.|+++..++.+..+. ..+.+.+..
T Consensus       243 -~~~~~~~~~L~eav~~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt-~E~~pe~a~  301 (398)
T 2a9f_A          243 -TNREFKSGTLEDALEGADIFIGVSAPGVLKAEWISKMAARPVIFAMANPI-PEIYPDEAL  301 (398)
T ss_dssp             -HSCTTCCCSCSHHHHTTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSS-CSSCHHHHH
T ss_pred             -cCcccchhhHHHHhccCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCC-ccCCHHHHH
Confidence             00 00011122222457999998886556788889999999988887774 255555554

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.21  E-value=0.056  Score=51.39  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hH-HHHHHHhcCCCEEEeCCCH-HHHH----Hh---cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SK-KEEALSLLGADKFVVSSDL-EQMK----AL---GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~-~~~~~~~~g~~~v~~~~~~-~~~~----~~---~~~~d~v  248 (299)
                      +++++||.|+ +++|.+.++.+...|++|++.++.. ++ .+++ ++.|...+....|. +..+    +.   -+++|++
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i-~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiL  399 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEI-KAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDIL  399 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHH-HhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEE
Confidence            4678899988 8999999999999999999987532 22 2333 34554444444444 2222    21   2689999


Q ss_pred             EEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          249 IDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      +++.|-.                         ...+.++..|+  .+|+++.+++.
T Consensus       400 VnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~  455 (604)
T 2et6_A          400 VNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST  455 (604)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence            9999831                         12445556663  35899999776

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.20  E-value=0.026  Score=48.81  Aligned_cols=92  Identities=15%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc------hHHHHHH--HhcCCCEE-EeCCCHHHHHHhcCCccEEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST------SKKEEAL--SLLGADKF-VVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      ..+|+|.|+ |.+|...++.+...|.+|++++|+.      ++.+.+.  +.-+.+.+ .|..+.+.+.+.-.++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            356999998 9999999999998999999999986      2322221  22344333 255566777776678999999


Q ss_pred             cCCCc--hhHHHHHHhcccC---cEEE
Q 022313          251 TASGD--HPFDAYMSLLKVA---GVYV  272 (299)
Q Consensus       251 ~~g~~--~~~~~~~~~l~~~---G~~v  272 (299)
                      +++..  .....+++.++..   ++++
T Consensus        84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           84 ALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             CCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CCCccchhhHHHHHHHHHHhCCccEEe
Confidence            98853  1234444544443   3666

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.19  E-value=0.055  Score=47.96  Aligned_cols=92  Identities=17%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      ..+|.|+|.|.+|...++.+...|.+|+++++++++.+.+. +.|..   ...+.+.+.+.....|+||.++.... ...
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~---~~~s~~e~~~~a~~~DvVi~~vp~~~-v~~   96 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-REGIA---GARSIEEFCAKLVKPRVVWLMVPAAV-VDS   96 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCB---CCSSHHHHHHHSCSSCEEEECSCGGG-HHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCE---EeCCHHHHHhcCCCCCEEEEeCCHHH-HHH
Confidence            46799999999999999999999999999999999888874 55542   12233332222345699999988764 444


Q ss_pred             HH----HhcccCcEEEEEcCC
Q 022313          261 YM----SLLKVAGVYVLVGFP  277 (299)
Q Consensus       261 ~~----~~l~~~G~~v~~g~~  277 (299)
                      ++    ..++++..++..+..
T Consensus        97 vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           97 MLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             HHHHHGGGCCTTCEEEECSSC
T ss_pred             HHHHHHhhCCCCCEEEeCCCC
Confidence            33    445566666666544

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.18  E-value=0.015  Score=48.94  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCc-------------------hHHHHHHH---hcC-CCEEE--eC-
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTST-------------------SKKEEALS---LLG-ADKFV--VS-  232 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~-------------------~~~~~~~~---~~g-~~~v~--~~-  232 (299)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+.                   .+.+.+++   ++. ...+.  .. 
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            34789999999999999999999998 777776542                   23333322   222 11221  11 


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCchh
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -+.+.+.++-.++|+|++++.+...
T Consensus       107 ~~~~~~~~~~~~~DvVi~~~d~~~~  131 (251)
T 1zud_1          107 LTGEALKDAVARADVVLDCTDNMAT  131 (251)
T ss_dssp             CCHHHHHHHHHHCSEEEECCSSHHH
T ss_pred             CCHHHHHHHHhcCCEEEECCCCHHH
Confidence            1234444444679999999997663

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.17  E-value=0.0079  Score=53.16  Aligned_cols=91  Identities=24%  Similarity=0.304  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|+++++..++. .. +++|.+.+   .+   +.++....|+|+.++....  
T Consensus       166 l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-~~~g~~~~---~~---l~ell~~aDvV~l~~P~t~~t  237 (347)
T 1mx3_A          166 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VE-RALGLQRV---ST---LQDLLFHSDCVTLHCGLNEHN  237 (347)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HH-HHHTCEEC---SS---HHHHHHHCSEEEECCCCCTTC
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hH-hhcCCeec---CC---HHHHHhcCCEEEEcCCCCHHH
Confidence            367899999999999999999999999999999876542 22 45565322   11   2233345788888776431  


Q ss_pred             --hH-HHHHHhcccCcEEEEEcCC
Q 022313          257 --PF-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 --~~-~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+ ...+..|+++..++.++..
T Consensus       238 ~~li~~~~l~~mk~gailIN~arg  261 (347)
T 1mx3_A          238 HHLINDFTVKQMRQGAFLVNTARG  261 (347)
T ss_dssp             TTSBSHHHHTTSCTTEEEEECSCT
T ss_pred             HHHhHHHHHhcCCCCCEEEECCCC
Confidence              12 5567788888888877644

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.17  E-value=0.018  Score=49.18  Aligned_cols=77  Identities=17%  Similarity=0.106  Sum_probs=56.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC---eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL---NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~---~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      .+|.|+|+|.+|.+.++.+...|.   +|+++++++++.+.+.+++|....   .+   ..+.....|+||.++.... .
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~---~~---~~~~~~~aDvVilav~p~~-~   76 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT---QD---NRQGALNADVVVLAVKPHQ-I   76 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE---SC---HHHHHSSCSEEEECSCGGG-H
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe---CC---hHHHHhcCCeEEEEeCHHH-H
Confidence            568999999999999999888887   899999999999988666775422   11   1223367899999996544 5


Q ss_pred             HHHHHhc
Q 022313          259 DAYMSLL  265 (299)
Q Consensus       259 ~~~~~~l  265 (299)
                      ..+++.+
T Consensus        77 ~~vl~~l   83 (280)
T 3tri_A           77 KMVCEEL   83 (280)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554433

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.16  E-value=0.016  Score=49.01  Aligned_cols=95  Identities=17%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-------cCCccEEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      -+|+++||.|+ +++|++.++.+...|++|+++++++++.  +.+.+  ....|..+.+.++.+       -+++|++++
T Consensus         9 L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVn   84 (261)
T 4h15_A            9 LRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG--LPEEL--FVEADLTTKEGCAIVAEATRQRLGGVDVIVH   84 (261)
T ss_dssp             CTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT--SCTTT--EEECCTTSHHHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC--CCcEE--EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            37899999987 8999999999999999999999875421  10111  112244454443332       368999999


Q ss_pred             cCCCc---------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          251 TASGD---------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~---------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      +.|..                           ...+.+++.|+  .+|+++.+++.
T Consensus        85 nAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~  140 (261)
T 4h15_A           85 MLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSI  140 (261)
T ss_dssp             CCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             CCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEeh
Confidence            88731                           12344444553  36899999876

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.15  E-value=0.036  Score=45.72  Aligned_cols=93  Identities=6%  Similarity=0.009  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh-cCCccEEEEcCCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL-GKSLDFIIDTASGDH  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  256 (299)
                      ...++++|+|.|.+|...++.+...|. |+++++++++.+.+ + .+...+. +..+.+.+.+. -.++|.++-+++...
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~-~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL-R-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS   83 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH-H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH-h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence            455789999999999999998888888 99999988888777 3 5543332 44455666665 378999999998764


Q ss_pred             h---HHHHHHhcccCcEEEEE
Q 022313          257 P---FDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       257 ~---~~~~~~~l~~~G~~v~~  274 (299)
                      .   .....+.+.+..+++..
T Consensus        84 ~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           84 ETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEEE
Confidence            1   22334555666566554

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.15  E-value=0.011  Score=52.23  Aligned_cols=89  Identities=18%  Similarity=0.284  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|++.+++....+..  . +...+   .   .+.++....|+|+.++....  
T Consensus       171 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~-g~~~~---~---~l~ell~~sDvV~l~~Plt~~T  241 (345)
T 4g2n_A          171 LTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--E-GAIYH---D---TLDSLLGASDIFLIAAPGRPEL  241 (345)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--T-TCEEC---S---SHHHHHHTCSEEEECSCCCGGG
T ss_pred             cCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--c-CCeEe---C---CHHHHHhhCCEEEEecCCCHHH
Confidence            357899999999999999999999999999999886544433  2 43221   1   23344456899988887421  


Q ss_pred             ---hHHHHHHhcccCcEEEEEcC
Q 022313          257 ---PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 ---~~~~~~~~l~~~G~~v~~g~  276 (299)
                         .-...+..|+++..++.++-
T Consensus       242 ~~li~~~~l~~mk~gailIN~aR  264 (345)
T 4g2n_A          242 KGFLDHDRIAKIPEGAVVINISR  264 (345)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHHhCHHHHhhCCCCcEEEECCC
Confidence               12567788888888888763

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.15  E-value=0.0088  Score=50.75  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHh-------cCCccEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      .+++++||.|+ +++|.+.++.+...|++|++++++++...    . .... ..|..+.+.+.++       .+++|+++
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   86 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----N-VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILV   86 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----T-SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----C-ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            67899999988 89999999999999999999998865432    1 1111 2344555444332       26899999


Q ss_pred             EcCCC
Q 022313          250 DTASG  254 (299)
Q Consensus       250 d~~g~  254 (299)
                      +++|.
T Consensus        87 ~nAg~   91 (269)
T 3vtz_A           87 NNAGI   91 (269)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99984

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.14  E-value=0.027  Score=48.48  Aligned_cols=91  Identities=19%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .+|||.|+ |.+|...++.+...|.+|+++++++...+ + +  +.+.+. +.. .+.+.++-.++|+||.+++...   
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~-~--~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~~~   77 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I-N--DYEYRVSDYT-LEDLINQLNDVDAVVHLAATRGSQG   77 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCCSSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C-C--ceEEEEcccc-HHHHHHhhcCCCEEEEccccCCCCC
Confidence            57999998 99999999999999999999999855544 4 2  433332 444 6666666679999999988531   


Q ss_pred             ----------hHHHHHHhcccC--cEEEEEcCC
Q 022313          257 ----------PFDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       257 ----------~~~~~~~~l~~~--G~~v~~g~~  277 (299)
                                ....+++.++..  .+++.++..
T Consensus        78 ~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~  110 (311)
T 3m2p_A           78 KISEFHDNEILTQNLYDACYENNISNIVYASTI  110 (311)
T ss_dssp             CGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccH
Confidence                      123344444443  368877644

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.14  E-value=0.022  Score=49.97  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHHh-cCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKAL-GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~-~~~~d~  247 (299)
                      .+.++||.+|+|. |..+..+++..+ .+|++++.+++-.+.+++.+.         .-.++..+-.+.+... .+.||+
T Consensus       119 ~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            5668999998863 566677777654 599999999988887755442         1233333323333333 367999


Q ss_pred             EEEcCC----------CchhHHHHHHhcccCcEEEEE
Q 022313          248 IIDTAS----------GDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       248 v~d~~g----------~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      |+-...          ....++.+.+.|+++|.++.-
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            986443          123577889999999999986

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.14  E-value=0.011  Score=51.84  Aligned_cols=89  Identities=20%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP-  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  257 (299)
                      -.+++|.|+|.|.+|...++.++..|.+|++++++.++.  + ++. .+. .  .+   +.++....|+|+.++..... 
T Consensus       144 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~-~--~~---l~ell~~aDvV~l~~p~~~~t  213 (333)
T 1j4a_A          144 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYY-V--DS---LDDLYKQADVISLHVPDVPAN  213 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCB-C--SC---HHHHHHHCSEEEECSCCCGGG
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Cee-c--CC---HHHHHhhCCEEEEcCCCcHHH
Confidence            357899999999999999999999999999999887654  2 233 221 1  12   22333468999998875431 


Q ss_pred             ---H-HHHHHhcccCcEEEEEcCC
Q 022313          258 ---F-DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ---~-~~~~~~l~~~G~~v~~g~~  277 (299)
                         + ...+..+++++.++.++..
T Consensus       214 ~~li~~~~l~~mk~ga~lIn~arg  237 (333)
T 1j4a_A          214 VHMINDESIAKMKQDVVIVNVSRG  237 (333)
T ss_dssp             TTCBSHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHhHHHHhhCCCCcEEEECCCC
Confidence               1 4567888998888888643

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.14  E-value=0.032  Score=45.50  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhc----CCcc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALG----KSLD  246 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~----~~~d  246 (299)
                      .++.+||-+|+| .|..+..+++..  +.+|+.++.+++..+.+.+.   .|..   .++..+..+.+..+.    +.||
T Consensus        57 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           57 QGARNILEIGTL-GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HTCSEEEEECCT-TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hCCCEEEEecCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            577899999987 377788888876  56999999998877766433   3532   333333333333331    5699


Q ss_pred             EEEEcCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +|+-.....   ..++.+.+.|+++|.++.-...
T Consensus       136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            999655432   3477788999999988876544

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.13  E-value=0.012  Score=49.64  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLN-VTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      -+|.|+|+|.+|...++.+...|.+ |.++++++++.+.+.+++|....   .+   ..+.....|+|+.++.... ...
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~---~~---~~~~~~~~Dvvi~av~~~~-~~~   83 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYT---TD---LAEVNPYAKLYIVSLKDSA-FAE   83 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEE---SC---GGGSCSCCSEEEECCCHHH-HHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCcee---CC---HHHHhcCCCEEEEecCHHH-HHH
Confidence            4699999999999988888888887 88999998888888666675322   11   1223467899999999765 444


Q ss_pred             HHH----hcccCcEEEEEcC
Q 022313          261 YMS----LLKVAGVYVLVGF  276 (299)
Q Consensus       261 ~~~----~l~~~G~~v~~g~  276 (299)
                      .++    .++++..++.+..
T Consensus        84 v~~~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           84 LLQGIVEGKREEALMVHTAG  103 (266)
T ss_dssp             HHHHHHTTCCTTCEEEECCT
T ss_pred             HHHHHHhhcCCCcEEEECCC
Confidence            444    3445556666643

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.13  E-value=0.023  Score=49.39  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=61.0

Q ss_pred             CEEEEEcCChHHHHHHHHHHH-C-CCeEE-EEeCCchH-HHHHHHhcCCCEEEeCCCHHHHHHh--cCCccEEEEcCCCc
Q 022313          182 KSLGVIGLGGLGHMAVKFGKA-F-GLNVT-VLSTSTSK-KEEALSLLGADKFVVSSDLEQMKAL--GKSLDFIIDTASGD  255 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~-~-g~~v~-~~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~--~~~~d~v~d~~g~~  255 (299)
                      -+|.|+|+|.+|...+..+.. . +.+++ ++++++++ ...+.+++|....  ..+.+.+.+.  ..++|+||++++..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--~~~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--cCCHHHHHhccCCCCCcEEEECCChH
Confidence            478999999999988888844 3 55554 44555555 4444478886532  2222233222  25799999999976


Q ss_pred             hhHHHHHHhccc--CcEEEEE
Q 022313          256 HPFDAYMSLLKV--AGVYVLV  274 (299)
Q Consensus       256 ~~~~~~~~~l~~--~G~~v~~  274 (299)
                      ...+.+..+++.  +..+++.
T Consensus        83 ~h~~~a~~al~a~~Gk~Vi~e  103 (312)
T 1nvm_B           83 AHVQNEALLRQAKPGIRLIDL  103 (312)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEC
T ss_pred             HHHHHHHHHHHhCCCCEEEEc
Confidence            667778888888  8887763

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.13  E-value=0.018  Score=48.00  Aligned_cols=95  Identities=16%  Similarity=0.077  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC--
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG--  254 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~--  254 (299)
                      ..++.+||-+|+| .|..+..+++.. +.+++.++.+++..+.+.+....-.++..+-. .+. ..+.||+|+....-  
T Consensus        31 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~  107 (259)
T 2p35_A           31 LERVLNGYDLGCG-PGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLA-TWK-PAQKADLLYANAVFQW  107 (259)
T ss_dssp             CSCCSSEEEETCT-TTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTT-TCC-CSSCEEEEEEESCGGG
T ss_pred             CCCCCEEEEecCc-CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChh-hcC-ccCCcCEEEEeCchhh
Confidence            3788899999987 366777777765 67999999999988888655433333333221 111 24679999875431  


Q ss_pred             ----chhHHHHHHhcccCcEEEEEc
Q 022313          255 ----DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       255 ----~~~~~~~~~~l~~~G~~v~~g  275 (299)
                          ...+..+.+.|+++|+++..-
T Consensus       108 ~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          108 VPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             STTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHhcCCCeEEEEEe
Confidence                234677889999999998763

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.12  E-value=0.0083  Score=50.53  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCC---CeEEEEeCCchHHHHH---HHhcCCCEEE--eCCCHHHHHHh-------c
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFG---LNVTVLSTSTSKKEEA---LSLLGADKFV--VSSDLEQMKAL-------G  242 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g---~~v~~~~~~~~~~~~~---~~~~g~~~v~--~~~~~~~~~~~-------~  242 (299)
                      .+++++||.|+ |++|...++.+...|   ++|++++++.++.+.+   .+..+.-.++  |..+.+.+.++       .
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            46678999988 999999999999999   8999999987654433   1111221222  33343333222       1


Q ss_pred             C--CccEEEEcCCC
Q 022313          243 K--SLDFIIDTASG  254 (299)
Q Consensus       243 ~--~~d~v~d~~g~  254 (299)
                      +  ++|++|.++|.
T Consensus        99 g~~~id~li~~Ag~  112 (267)
T 1sny_A           99 KDQGLNVLFNNAGI  112 (267)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             CCCCccEEEECCCc
Confidence            2  79999999883

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.12  E-value=0.022  Score=46.68  Aligned_cols=96  Identities=19%  Similarity=0.244  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhcC---CCEEEeCCCHH--HHHHhcCCccEEEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLLG---ADKFVVSSDLE--QMKALGKSLDFIID  250 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~--~~~~~~~~~d~v~d  250 (299)
                      ++++++||-+|+|. |..+..+++..|  .+|+.++.+++..+.+.+...   .-.++..+-.+  ......+.||+|+-
T Consensus        71 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            47899999999876 778888888764  599999999876555533322   12223222111  11122357999997


Q ss_pred             cCCCch----hHHHHHHhcccCcEEEEE
Q 022313          251 TASGDH----PFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 ~~g~~~----~~~~~~~~l~~~G~~v~~  274 (299)
                      ......    .+..+.+.|+++|+++..
T Consensus       150 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          150 DVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            665442    267788999999999887

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.11  E-value=0.02  Score=52.66  Aligned_cols=75  Identities=12%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCch
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~  256 (299)
                      -+|+|.|+|-+|...++.+...|..|++++.++++.+.+.++++...+. +..+++.+.+.+ +.+|+++-+++...
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            3689999999999999888888899999999999999887778764443 455677777775 78999998888765

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.10  E-value=0.025  Score=49.23  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcC----------CCEEEeCCCHHHHHHhcCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLG----------ADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g----------~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      .++++||++|+|. |..+..+++.. +.+|++++.+++-.+.+++.+.          .-.++..+..+.+....+.||+
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            4568999998763 55666777764 4599999999888777755442          1133333333334444578999


Q ss_pred             EEEcCCC-------------chhHHHHHHhcccCcEEEEE
Q 022313          248 IIDTASG-------------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       248 v~d~~g~-------------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      |+-....             ...++.+.+.|+++|.++..
T Consensus       155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            9864432             23478889999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.09  E-value=0.023  Score=50.08  Aligned_cols=93  Identities=15%  Similarity=0.068  Sum_probs=64.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      -.+|.|+|.|.+|...+..++..|.+|++++++++..+.+ .+.|....  .+..+.+.+.....|+||.++.... ...
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-~~~G~~~~--~~~~e~~~~a~~~aDlVilavP~~~-~~~   83 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-VDEGFDVS--ADLEATLQRAAAEDALIVLAVPMTA-IDS   83 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-HHTTCCEE--SCHHHHHHHHHHTTCEEEECSCHHH-HHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeee--CCHHHHHHhcccCCCEEEEeCCHHH-HHH
Confidence            3569999999999999999999999999999999888887 57887432  1112223322245799999998643 333


Q ss_pred             HHHh---cccCcEEEEEcCC
Q 022313          261 YMSL---LKVAGVYVLVGFP  277 (299)
Q Consensus       261 ~~~~---l~~~G~~v~~g~~  277 (299)
                      .++.   ++++..+++++..
T Consensus        84 vl~~l~~~~~~~iv~Dv~Sv  103 (341)
T 3ktd_A           84 LLDAVHTHAPNNGFTDVVSV  103 (341)
T ss_dssp             HHHHHHHHCTTCCEEECCSC
T ss_pred             HHHHHHccCCCCEEEEcCCC
Confidence            3322   3566666667654

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.09  E-value=0.036  Score=48.63  Aligned_cols=90  Identities=19%  Similarity=0.264  Sum_probs=63.8

Q ss_pred             CEEEEEcCChHHHHHHHHHH-HC-CCeEE-EEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-c-CCccEEEEcCCCch
Q 022313          182 KSLGVIGLGGLGHMAVKFGK-AF-GLNVT-VLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-G-KSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~-~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~-~~~d~v~d~~g~~~  256 (299)
                      -+|.|+|+|.+|...++.++ .. +.+++ +.++++++.+.+.+++|...+++  +   +.++ . .++|+|+.++....
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~---~~~~l~~~~~D~V~i~tp~~~   83 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N---YKDMIDTENIDAIFIVAPTPF   83 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C---HHHHHTTSCCSEEEECSCGGG
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C---HHHHhcCCCCCEEEEeCChHh
Confidence            47899999999998888776 43 56654 56777777777767888765542  2   2222 2 47999999999877


Q ss_pred             hHHHHHHhcccCcEEEEEcCC
Q 022313          257 PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....+..+++.+ +-+.+..+
T Consensus        84 h~~~~~~al~~G-~~v~~eKp  103 (346)
T 3cea_A           84 HPEMTIYAMNAG-LNVFCEKP  103 (346)
T ss_dssp             HHHHHHHHHHTT-CEEEECSC
T ss_pred             HHHHHHHHHHCC-CEEEEcCC
Confidence            677788888765 55555554

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.09  E-value=0.017  Score=48.51  Aligned_cols=74  Identities=22%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhc---CCC-EE--EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEALSLL---GAD-KF--VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~  244 (299)
                      .++++||.|+ |++|...++.+...|++|+++++.++. .+.+.+.+   +.. .+  .|..+.+.+.++       .++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4678999988 899999999999999999999776554 33332222   211 22  244455444432       258


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      +|+++.++|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999999

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.08  E-value=0.013  Score=49.23  Aligned_cols=69  Identities=20%  Similarity=0.128  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      .++++||.|+ |++|...++.+...|++|+++++++++.+.      ... ..|..+.+.+.++       .+++|++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999998 899999999999999999999998654332      111 1244455444332       257899999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        94 nAg~   97 (253)
T 2nm0_A           94 NAGV   97 (253)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            8874

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.07  E-value=0.067  Score=49.30  Aligned_cols=96  Identities=21%  Similarity=0.270  Sum_probs=64.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      .+|.|+|.|.+|...+..+...|.+|.+.++++++.+.+.++.+...+....+.+.+.+-.+..|+|+.++.....+..+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            35899999999999988888889999999999998888865542111222333332222123589999999885324444


Q ss_pred             H----HhcccCcEEEEEcCC
Q 022313          262 M----SLLKVAGVYVLVGFP  277 (299)
Q Consensus       262 ~----~~l~~~G~~v~~g~~  277 (299)
                      +    ..++++..++..+..
T Consensus        86 l~~l~~~l~~g~iiId~s~~  105 (474)
T 2iz1_A           86 IKSLLPLLDIGDILIDGGNT  105 (474)
T ss_dssp             HHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHhhCCCCCEEEECCCC
Confidence            4    355566666665443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.06  E-value=0.025  Score=49.57  Aligned_cols=92  Identities=18%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc----hHHHHHH--HhcCCCEE-EeCCCHHHHHHhcC--CccEEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST----SKKEEAL--SLLGADKF-VVSSDLEQMKALGK--SLDFIID  250 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~----~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~--~~d~v~d  250 (299)
                      ..+|||.|+ |.+|...++.+...|.+|++++|++    ++.+.+.  +..+.+.+ .|..+.+.+.++-.  ++|+||.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            357999998 9999999999999999999999976    3333221  23344433 25556666666555  9999999


Q ss_pred             cCCCch--hHHHHHHhcccCc---EEE
Q 022313          251 TASGDH--PFDAYMSLLKVAG---VYV  272 (299)
Q Consensus       251 ~~g~~~--~~~~~~~~l~~~G---~~v  272 (299)
                      +++...  ....+++.++..|   +++
T Consensus        90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           90 TVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             CCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            998632  2345555555544   555

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.05  E-value=0.011  Score=50.71  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYM  262 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  262 (299)
                      +|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|...   ..+.   .+.....|+|+.++..+......+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~---~~~~---~~~~~~advvi~~v~~~~~~~~v~   75 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLV-ALGARQ---ASSP---AEVCAACDITIAMLADPAAAREVC   75 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHH-HHTCEE---CSCH---HHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCee---cCCH---HHHHHcCCEEEEEcCCHHHHHHHH
Confidence            588999999999988888888999999999999888874 446421   1122   122234688888888763354444


Q ss_pred             -------HhcccCcEEEEEcC
Q 022313          263 -------SLLKVAGVYVLVGF  276 (299)
Q Consensus       263 -------~~l~~~G~~v~~g~  276 (299)
                             ..++++..++..+.
T Consensus        76 ~~~~~l~~~l~~g~~vv~~st   96 (287)
T 3pdu_A           76 FGANGVLEGIGGGRGYIDMST   96 (287)
T ss_dssp             HSTTCGGGTCCTTCEEEECSC
T ss_pred             cCchhhhhcccCCCEEEECCC
Confidence                   34555556665543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.03  E-value=0.011  Score=48.50  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEE-EeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTV-LSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      .+|.|+|+|.+|.+.++.+...|.+|++ .++++++.+.+.+++|.....  ...+.    ....|+||.++.... ...
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~--~~~~~----~~~aDvVilavp~~~-~~~   96 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKA--VELKD----ALQADVVILAVPYDS-IAD   96 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEE--CCHHH----HTTSSEEEEESCGGG-HHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCccc--ChHHH----HhcCCEEEEeCChHH-HHH
Confidence            4699999999999999988888998888 889988888876777765432  22221    256899999987655 666


Q ss_pred             HHHhcc--cCcEEEEEc
Q 022313          261 YMSLLK--VAGVYVLVG  275 (299)
Q Consensus       261 ~~~~l~--~~G~~v~~g  275 (299)
                      .+..++  ++..++.+.
T Consensus        97 v~~~l~~~~~~ivi~~~  113 (220)
T 4huj_A           97 IVTQVSDWGGQIVVDAS  113 (220)
T ss_dssp             HHTTCSCCTTCEEEECC
T ss_pred             HHHHhhccCCCEEEEcC
Confidence            666654  233444443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.02  E-value=0.032  Score=46.55  Aligned_cols=90  Identities=14%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH--------------HHHHHHhcCCCEEEeCCCHHHHHHhcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK--------------KEEALSLLGADKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~--------------~~~~~~~~g~~~v~~~~~~~~~~~~~~~  244 (299)
                      ..+.+|.|+|.|.+|...++.+...|.+|++.++++++              .+.+.++++.....   +   ..+....
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~e~~~~   90 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLA---A---FADVAAG   90 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEE---E---HHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceecc---C---HHHHHhc
Confidence            45688999999999999999999999999999999886              44443445543321   1   1222345


Q ss_pred             ccEEEEcCCCchhHHHH----HHhcccCcEEEEEc
Q 022313          245 LDFIIDTASGDHPFDAY----MSLLKVAGVYVLVG  275 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~----~~~l~~~G~~v~~g  275 (299)
                      .|+||.++........+    ...+ ++..++.+.
T Consensus        91 aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           91 AELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             CSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             CCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            89999999987632222    2233 566777776

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.02  E-value=0.025  Score=47.02  Aligned_cols=73  Identities=18%  Similarity=0.085  Sum_probs=47.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHH-H-h------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMK-A-L------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~-~------~~~~d~v~d  250 (299)
                      .++++||.|+ |++|...++.+.. |++|+++++++++.+.+. +......+..+-.+... + .      .+++|++++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA-EIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH-TSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH-hhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            4688999998 8999998888766 889999999988888774 33322233222111111 1 1      147999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        82 ~Ag~   85 (245)
T 3e9n_A           82 AAAV   85 (245)
T ss_dssp             CC--
T ss_pred             CCCc
Confidence            9984

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.01  E-value=0.015  Score=47.53  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC----------CEEEeCCCHHHHHHhcCCccE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA----------DKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      ++++.+||-+|+|. |..+..+++. ++++++++.+++..+.+.+....          -.++..+. .......+.||+
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~  104 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSFHDSSFDF  104 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCSCTTCEEE
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCCCCCceeE
Confidence            36888999999875 7777777776 88999999999888887554431          12222221 111111367999


Q ss_pred             EEEcCC-----Cc----hhHHHHHHhcccCcEEEEEcC
Q 022313          248 IIDTAS-----GD----HPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       248 v~d~~g-----~~----~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      |+-...     ..    ..++.+.+.|+++|+++....
T Consensus       105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            986432     21    357788899999999988743

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.01  E-value=0.0072  Score=52.76  Aligned_cols=98  Identities=18%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhcC--CccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALGK--SLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~--~~d~v~d~~g~  254 (299)
                      ++.+|||.|+ |.+|...++.+...|.+|++++++........+++..-.++  +..+.+.+.++-.  .+|+||.+++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            4578999997 99999999999889999999998754322111122211222  4445555555433  49999999884


Q ss_pred             chh--------------HHHHHHhcccC--cEEEEEcCC
Q 022313          255 DHP--------------FDAYMSLLKVA--GVYVLVGFP  277 (299)
Q Consensus       255 ~~~--------------~~~~~~~l~~~--G~~v~~g~~  277 (299)
                      ...              ...+++.+.+.  ++++.++..
T Consensus       100 ~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~  138 (333)
T 2q1w_A          100 YKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTA  138 (333)
T ss_dssp             CSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred             cCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcH
Confidence            321              12333333332  588887655

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.01  E-value=0.0052  Score=52.91  Aligned_cols=86  Identities=23%  Similarity=0.334  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...++.++..|.+|++++++.+..+.      . .  ...   .+.++....|+|+.++....  
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~-~--~~~---~l~ell~~aDiV~l~~P~t~~t  187 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------D-V--ISE---SPADLFRQSDFVLIAIPLTDKT  187 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------S-E--ECS---SHHHHHHHCSEEEECCCCCTTT
T ss_pred             eecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------c-c--ccC---ChHHHhhccCeEEEEeeccccc
Confidence            35789999999999999999999999999999987644321      1 1  111   22233345788888777421  


Q ss_pred             ---hHHHHHHhcccCcEEEEEcC
Q 022313          257 ---PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 ---~~~~~~~~l~~~G~~v~~g~  276 (299)
                         .-...+..|+++..++.++-
T Consensus       188 ~~li~~~~l~~mk~gailIN~aR  210 (290)
T 3gvx_A          188 RGMVNSRLLANARKNLTIVNVAR  210 (290)
T ss_dssp             TTCBSHHHHTTCCTTCEEEECSC
T ss_pred             hhhhhHHHHhhhhcCceEEEeeh
Confidence               12566788888888888763

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.00  E-value=0.017  Score=48.79  Aligned_cols=76  Identities=25%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHH---hcCC-CEE--EeCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALS---LLGA-DKF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~---~~g~-~~v--~~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+ |++|...++.+...|++|++++ +..+..+...+   +.+. -.+  .|..+.+.++++       .+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45678999988 8999999999999999999998 44444433322   2232 222  244455444332       25


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.++|.
T Consensus       103 ~id~li~nAg~  113 (269)
T 3gk3_A          103 KVDVLINNAGI  113 (269)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999983

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.00  E-value=0.026  Score=46.59  Aligned_cols=98  Identities=21%  Similarity=0.258  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHH-HhcCCccEEEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMK-ALGKSLDFIID  250 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~-~~~~~~d~v~d  250 (299)
                      .++.+||=+|+|. |..+..+++.. +.+|+.++.+++..+.+++.   .+..   .++..+..+.+. ...+.||+|+-
T Consensus        70 ~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           70 NNVKNILEIGTAI-GYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HTCCEEEEECCSS-SHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             cCCCEEEEEeCch-hHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            5778899998863 66667777744 56999999998877776443   3432   344444334444 45678999986


Q ss_pred             cCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .....   ..++.+.+.|+++|.++.-...
T Consensus       149 ~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          149 DAAKAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             ETTSSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             cCcHHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence            55432   2367778999999999885444

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.00  E-value=0.06  Score=49.64  Aligned_cols=95  Identities=20%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC----CEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA----DKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      +|.|+|.|.+|...+..+...|.+|.+.++++++.+.+.++.|.    +.+....+.+.+.+..++.|+|+.++.....+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v   82 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHH
Confidence            48899999999999988888899999999999988888655551    11222333332222113689999999985324


Q ss_pred             HHH----HHhcccCcEEEEEcCC
Q 022313          259 DAY----MSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~----~~~l~~~G~~v~~g~~  277 (299)
                      ..+    ...++++..++..+..
T Consensus        83 ~~vl~~l~~~l~~g~iIId~sng  105 (478)
T 1pgj_A           83 DSTIEQLKKVFEKGDILVDTGNA  105 (478)
T ss_dssp             HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             HHHHHHHHhhCCCCCEEEECCCC
Confidence            443    3456666666665433

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.99  E-value=0.0049  Score=52.15  Aligned_cols=70  Identities=17%  Similarity=0.053  Sum_probs=52.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      +++|||.|+ |.+|...++.+...|++|+++++++.+..    ..+... ..|..+.+.+.++..++|+||.+.|.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            467999997 99999999999888999999999865432    111211 22555667777777799999999874

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.99  E-value=0.0082  Score=48.21  Aligned_cols=96  Identities=23%  Similarity=0.334  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHhcCCccEEEEcCCC-
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKALGKSLDFIIDTASG-  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~-  254 (299)
                      +++ +||-+|+|. |..+..+++. +.+++.++.+++..+.+.+.+   +...-+...+........+.||+|+..... 
T Consensus        29 ~~~-~vLdiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~  105 (202)
T 2kw5_A           29 PQG-KILCLAEGE-GRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHL  105 (202)
T ss_dssp             CSS-EEEECCCSC-THHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCC
T ss_pred             CCC-CEEEECCCC-CHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcC
Confidence            566 899899875 6677777765 789999999988877764443   222111122211111112579999875432 


Q ss_pred             -----chhHHHHHHhcccCcEEEEEcCC
Q 022313          255 -----DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 -----~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                           ...+..+.+.|+++|+++.....
T Consensus       106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          106 PSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             CHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                 12467778899999999877543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.99  E-value=0.017  Score=49.06  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc----CCC--EEEeCCCHHHHHHh-cCCccE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL----GAD--KFVVSSDLEQMKAL-GKSLDF  247 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~-~~~~d~  247 (299)
                      .++++++||-+|+| .|..+..+++..  +.+|+.++.+++..+.+.+.+    |.+  .++..+-.+   .. .+.||+
T Consensus       107 ~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD~  182 (275)
T 1yb2_A          107 GLRPGMDILEVGVG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYDA  182 (275)
T ss_dssp             CCCTTCEEEEECCT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEEE
T ss_pred             CCCCcCEEEEecCC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCccE
Confidence            34889999999987 477777888763  569999999998887775443    422  222222111   12 256999


Q ss_pred             EEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+...... ..++.+.+.|+++|+++.....
T Consensus       183 Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  213 (275)
T 1yb2_A          183 VIADIPDPWNHVQKIASMMKPGSVATFYLPN  213 (275)
T ss_dssp             EEECCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             EEEcCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            99866554 4588899999999999887654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.97  E-value=0.024  Score=48.60  Aligned_cols=92  Identities=17%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch------HHHHHH--HhcCCCEE-EeCCCHHHHHHhcCCccEEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS------KKEEAL--SLLGADKF-VVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~------~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++|+|+|+ |.+|...++.+...|.+|++++|+..      +.+.+.  +..+.+.+ .|..+.+.+.+.-.++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            457999998 99999999999999999999999742      222221  22344332 245566666665568999999


Q ss_pred             cCCCch--hHHHHHHhcccC---cEEE
Q 022313          251 TASGDH--PFDAYMSLLKVA---GVYV  272 (299)
Q Consensus       251 ~~g~~~--~~~~~~~~l~~~---G~~v  272 (299)
                      +++...  ....+++.++..   .+++
T Consensus        84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           84 TVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             CCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             CCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            988532  123344444332   4666

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.96  E-value=0.03  Score=50.64  Aligned_cols=76  Identities=13%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHH-CCCeEEEEeCCchHH---------------HHHHHhcCCCEE-E--eCCCHHHH
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKA-FGLNVTVLSTSTSKK---------------EEALSLLGADKF-V--VSSDLEQM  238 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~-~g~~v~~~~~~~~~~---------------~~~~~~~g~~~v-~--~~~~~~~~  238 (299)
                      +.++++||.|+ +++|++.++.+.. .|++|++++++.+..               ....++.|.... +  |-.+.+.+
T Consensus        59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            46788999998 8999999888888 999999998765431               122245664322 2  33344333


Q ss_pred             HH-------hc-CCccEEEEcCCC
Q 022313          239 KA-------LG-KSLDFIIDTASG  254 (299)
Q Consensus       239 ~~-------~~-~~~d~v~d~~g~  254 (299)
                      .+       .- +++|++++++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCcc
Confidence            22       23 689999999875

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.94  E-value=0.016  Score=51.56  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ...+|||.|+ |.+|...++.+...|++|++++++..+.... ...+...+ .+..+.+.+.++-.++|+||.+++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-GGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-ccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            3568999998 9999999999988899999999886543322 11233222 2455566666666799999999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.94  E-value=0.019  Score=49.85  Aligned_cols=88  Identities=20%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      .+|.|+|+|.+|...+..+...|.+|+++++++++.+.+. +.|.. +  ..+..   +.....|+|+.++..+......
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~-~--~~~~~---~~~~~~DvVi~av~~~~~~~~v  103 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-QEGAR-L--GRTPA---EVVSTCDITFACVSDPKAAKDL  103 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-HTTCE-E--CSCHH---HHHHHCSEEEECCSSHHHHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HcCCE-E--cCCHH---HHHhcCCEEEEeCCCHHHHHHH
Confidence            5699999999999999888888999999999988888773 55642 1  12221   2223579999999865435555


Q ss_pred             H-------HhcccCcEEEEEcC
Q 022313          262 M-------SLLKVAGVYVLVGF  276 (299)
Q Consensus       262 ~-------~~l~~~G~~v~~g~  276 (299)
                      +       ..++++..++.++.
T Consensus       104 ~~~~~~~~~~l~~~~~vv~~s~  125 (316)
T 2uyy_A          104 VLGPSGVLQGIRPGKCYVDMST  125 (316)
T ss_dssp             HHSTTCGGGGCCTTCEEEECSC
T ss_pred             HcCchhHhhcCCCCCEEEECCC
Confidence            4       34556666666643

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.94  E-value=0.033  Score=48.94  Aligned_cols=86  Identities=23%  Similarity=0.247  Sum_probs=60.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      +.+|.|+|.|.+|...++.++..|.+|++.++++++.....++.|... .   +.   .+.....|+|+.++.... ...
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~-~---~~---~e~~~~aDvVilavp~~~-~~~   87 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-A---DV---KTAVAAADVVMILTPDEF-QGR   87 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-E---CH---HHHHHTCSEEEECSCHHH-HHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEE-c---cH---HHHHhcCCEEEEeCCcHH-HHH
Confidence            356999999999999999999999999999988776333336778632 2   22   122246899999998765 344


Q ss_pred             HHH-----hcccCcEEEEE
Q 022313          261 YMS-----LLKVAGVYVLV  274 (299)
Q Consensus       261 ~~~-----~l~~~G~~v~~  274 (299)
                      .++     .++++..++.+
T Consensus        88 v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           88 LYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             HHHHHTGGGCCTTCEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEc
Confidence            443     45566666654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.94  E-value=0.021  Score=46.41  Aligned_cols=93  Identities=23%  Similarity=0.225  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-CCEEEeCCCHHHHHHhcCCccEEEEcCCC---
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-ADKFVVSSDLEQMKALGKSLDFIIDTASG---  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~d~v~d~~g~---  254 (299)
                      +++.+||=+|+|. |..+..+++. +.+++.++.+++..+.+.+.+. .-.++..+-.+ +. ..+.||+|+....-   
T Consensus        44 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           44 KSFGNVLEFGVGT-GNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHL  119 (220)
T ss_dssp             TCCSEEEEECCTT-SHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGS
T ss_pred             cCCCeEEEeCCCC-CHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcC
Confidence            5788999999864 6666666665 7899999999998888866654 22222222111 11 11679999875331   


Q ss_pred             --ch---hHHHHHHhcccCcEEEEEc
Q 022313          255 --DH---PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       255 --~~---~~~~~~~~l~~~G~~v~~g  275 (299)
                        ..   .++.+.+.|+++|.++..-
T Consensus       120 ~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          120 TDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence              11   5788889999999998774

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.92  E-value=0.015  Score=48.72  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHH---HhcCCC-EEE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEAL---SLLGAD-KFV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~---~~~g~~-~v~--~~~~~~~~~~~-------~~  243 (299)
                      .+++++||.|+ |++|...++.+...|++|++++ ++.++.+...   ++.+.. .++  |..+.+.++++       .+
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   90 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG   90 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            67789999987 8999999999999999999887 5544443322   233422 222  34444443332       26


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++.++|.
T Consensus        91 ~id~lv~~Ag~  101 (256)
T 3ezl_A           91 EIDVLVNNAGI  101 (256)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999883

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=95.90  E-value=0.033  Score=43.52  Aligned_cols=99  Identities=11%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      ..++++||=+|+|. |..+..+++.-..+|+.++.+++..+.+++.+   +..   .++..+-.+......+.||+|+-.
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence            36788999898863 55566666663359999999988877764433   321   233333223344445679999875


Q ss_pred             CCC-----chhHHHHH--HhcccCcEEEEEcCC
Q 022313          252 ASG-----DHPFDAYM--SLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~-----~~~~~~~~--~~l~~~G~~v~~g~~  277 (299)
                      ..-     ...+....  +.|+++|.++..-..
T Consensus       108 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          108 PPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            331     12244444  788999998876444

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.90  E-value=0.023  Score=48.18  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=63.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCCc----h
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASGD----H  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~~----~  256 (299)
                      .+|||.|+|.+|...+..+...|.+|++++|++++...+ +..+.+.+. +..+   +.  ..++|+||.+++..    .
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d---~~--~~~~d~vi~~a~~~~~~~~   79 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI-RASGAEPLLWPGEE---PS--LDGVTHLLISTAPDSGGDP   79 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHH-HHTTEEEEESSSSC---CC--CTTCCEEEECCCCBTTBCH
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhH-hhCCCeEEEecccc---cc--cCCCCEEEECCCccccccH
Confidence            579999999999999999998899999999998887776 344543332 2222   11  47899999999753    2


Q ss_pred             hHHHHHHhccc----CcEEEEEcCC
Q 022313          257 PFDAYMSLLKV----AGVYVLVGFP  277 (299)
Q Consensus       257 ~~~~~~~~l~~----~G~~v~~g~~  277 (299)
                      .....++.++.    -.+++.++..
T Consensus        80 ~~~~l~~a~~~~~~~~~~~v~~Ss~  104 (286)
T 3ius_A           80 VLAALGDQIAARAAQFRWVGYLSTT  104 (286)
T ss_dssp             HHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred             HHHHHHHHHHhhcCCceEEEEeecc
Confidence            23444555443    2688877644

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.89  E-value=0.069  Score=49.26  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      ..+|.|+|.|.+|...+..+...|.+|++.++++++.+.+.++.+...+....+.+...+-.+..|+||-++.....+..
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   94 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDA   94 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHH
Confidence            35699999999999999988888999999999999888876554211122233332221111358999999987422444


Q ss_pred             HH----HhcccCcEEEEEcCC
Q 022313          261 YM----SLLKVAGVYVLVGFP  277 (299)
Q Consensus       261 ~~----~~l~~~G~~v~~g~~  277 (299)
                      ++    ..++++..++..+..
T Consensus        95 vl~~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           95 AIDSLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             HHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHhhcCCCCEEEECCCC
Confidence            44    345556666666544

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.89  E-value=0.021  Score=46.86  Aligned_cols=96  Identities=21%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC-CEEEeCCCHHHHHHh-cCCccEEEEcC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA-DKFVVSSDLEQMKAL-GKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~-~~~~d~v~d~~  252 (299)
                      ++++++||=+|+|..|..+..+++..+.+|+.++.+++..+.+.+.   .+. -.++..+- .....+ .+.||+|+-..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECC
Confidence            4789999999988568888888887678999999998877766433   232 23333221 011111 26799999542


Q ss_pred             CC-------------------------chhHHHHHHhcccCcEEEEE
Q 022313          253 SG-------------------------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       253 g~-------------------------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      .-                         ...+..+.+.|+++|+++.+
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            20                         23477788899999999875

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.88  E-value=0.015  Score=45.23  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC----
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG----  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~----  254 (299)
                      +++.+||-+|+|. |..+..+++... ++++++.+++..+.+.+....-.++..+    .....+.||+|+....-    
T Consensus        16 ~~~~~vLDiG~G~-G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d----~~~~~~~~D~v~~~~~l~~~~   89 (170)
T 3i9f_A           16 GKKGVIVDYGCGN-GFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP----KEIPDNSVDFILFANSFHDMD   89 (170)
T ss_dssp             SCCEEEEEETCTT-CTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG----GGSCTTCEEEEEEESCSTTCS
T ss_pred             CCCCeEEEECCCC-CHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC----CCCCCCceEEEEEccchhccc
Confidence            7888999999864 667777777654 9999999998888886554433333322    11123679999865432    


Q ss_pred             --chhHHHHHHhcccCcEEEEEcCC
Q 022313          255 --DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 --~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        ...++.+.+.|+++|+++.....
T Consensus        90 ~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           90 DKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHhcCCCCEEEEEEcC
Confidence              12478889999999999987554

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.87  E-value=0.032  Score=46.89  Aligned_cols=76  Identities=22%  Similarity=0.231  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcC---ChHHHHHHHHHHHCCCeEEEEeCCchHH-----HHHHHhcCCCEE---EeCCCHHHHHHh------
Q 022313          179 QPGKSLGVIGL---GGLGHMAVKFGKAFGLNVTVLSTSTSKK-----EEALSLLGADKF---VVSSDLEQMKAL------  241 (299)
Q Consensus       179 ~~g~~vlI~G~---g~~G~~a~~~a~~~g~~v~~~~~~~~~~-----~~~~~~~g~~~v---~~~~~~~~~~~~------  241 (299)
                      -+++++||.|+   +++|...++.+...|++|++++++.++.     +++.++.+....   .|..+.+.++++      
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            46789999985   4899999999999999999998775433     333233343222   244444443332      


Q ss_pred             -cCCccEEEEcCCC
Q 022313          242 -GKSLDFIIDTASG  254 (299)
Q Consensus       242 -~~~~d~v~d~~g~  254 (299)
                       .+++|++++++|.
T Consensus        98 ~~g~id~li~nAg~  111 (267)
T 3gdg_A           98 DFGQIDAFIANAGA  111 (267)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             3689999999983

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.86  E-value=0.012  Score=49.68  Aligned_cols=104  Identities=15%  Similarity=0.094  Sum_probs=68.8

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC---CEEEeCCCHHHHHHhcCC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA---DKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~~~~~~  244 (299)
                      ++.....++++.+||-+|+|. |..+..+++..+++|+.++.++...+.+.+.+   |.   -.++..+- ..+....+.
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~  114 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGT-GGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEE  114 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTT-CHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTC
T ss_pred             HHHhcccCCCCCEEEEeCCCC-CHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCC
Confidence            344444458899999999974 77888888885569999999988777664432   32   22222221 111111367


Q ss_pred             ccEEEEcCC-----CchhHHHHHHhcccCcEEEEEcC
Q 022313          245 LDFIIDTAS-----GDHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       245 ~d~v~d~~g-----~~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      ||+|+....     -...++.+.+.|+|+|+++....
T Consensus       115 fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          115 LDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             EEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            999986332     23357788899999999987643

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.85  E-value=0.021  Score=49.16  Aligned_cols=87  Identities=21%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH--
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD--  259 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~--  259 (299)
                      .+|.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|...   ..   ...++.. .|+||.++..+....  
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~---~~---~~~~~~~-aDvvi~~vp~~~~~~~v   87 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPL-AEAGATL---AD---SVADVAA-ADLIHITVLDDAQVREV   87 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHH-HHTTCEE---CS---SHHHHTT-SSEEEECCSSHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCEE---cC---CHHHHHh-CCEEEEECCChHHHHHH
Confidence            469999999999999998888899999999999988888 4556421   11   2234445 899999988653233  


Q ss_pred             --HHHHhcccCcEEEEEcC
Q 022313          260 --AYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       260 --~~~~~l~~~G~~v~~g~  276 (299)
                        .....++++..++..+.
T Consensus        88 ~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           88 VGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             HHHHHTTCCTTCEEEECSC
T ss_pred             HHHHHHhcCCCCEEEEeCC
Confidence              34455666666666643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.85  E-value=0.038  Score=48.57  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC-------EEEeCC-CHHHHHHhcCCccEEEEcCC
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD-------KFVVSS-DLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~-------~v~~~~-~~~~~~~~~~~~d~v~d~~g  253 (299)
                      .+|.|+|+|.+|...+..+...|.+|+++++++++.+.+.+..+..       ...... ......+...++|+||.++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999988888888999999999988888775443310       000000 01122233367999999999


Q ss_pred             CchhHHHHHH----hcccCcEEEEE
Q 022313          254 GDHPFDAYMS----LLKVAGVYVLV  274 (299)
Q Consensus       254 ~~~~~~~~~~----~l~~~G~~v~~  274 (299)
                      ... ...+++    .++++..++..
T Consensus        85 ~~~-~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           85 AIH-HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             GGG-HHHHHHHHGGGCCTTCEEEES
T ss_pred             chH-HHHHHHHHHHhCCCCCEEEEc
Confidence            876 344443    35555556655

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.84  E-value=0.014  Score=50.95  Aligned_cols=93  Identities=12%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      +...+++|+|+|.+|...+..+.. .+. +|.+.+++.++.+.+.++++..  .+. ..+   +.+.. +.|+|+.++..
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~---~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQP---AEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECC---HHHHT-SSSEEEECCCC
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECC---HHHHh-CCCEEEEeeCC
Confidence            567899999999999888776665 444 8999999999988887665421  122 222   33444 79999999986


Q ss_pred             chhHHHHHHhcccCcEEEEEcCC
Q 022313          255 DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 ~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...+- ....++++-.++.+|..
T Consensus       198 ~~pv~-~~~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          198 RKPVV-KAEWVEEGTHINAIGAD  219 (322)
T ss_dssp             SSCCB-CGGGCCTTCEEEECSCC
T ss_pred             CCcee-cHHHcCCCeEEEECCCC
Confidence            43111 12578888888888766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-27
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	7e-26
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	6e-21
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	8e-20
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	8e-20
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-18
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-16
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	4e-16
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-15
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	5e-15
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	6e-15
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	7e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	6e-14
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	3e-13
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	4e-13
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	4e-12
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	5e-12
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	7e-12
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	8e-12
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	3e-11
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	3e-11
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	3e-11
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	9e-11
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-10
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	2e-10
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	2e-10
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	9e-09
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	2e-08
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	1e-06
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	2e-06
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	2e-06
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	2e-05
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	3e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	7e-05
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	9e-05
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	3e-04
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	3e-04
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	3e-04
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	0.002

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 4e-27
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 6/179 (3%)

Query: 12  GWAARDPSGVLSPY--SFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGH 69
           G A +      +P    ++ +     D+ I I  CGVC +D+       G+ K PLV GH
Sbjct: 9   GIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGH 68

Query: 70  EIVGIVKEVGHNVS-RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADG 128
           EIVG V ++G   +   KVG  VGVG  V SC +C+ C +  E +C + V T++    DG
Sbjct: 69  EIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDG 128

Query: 129 TITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI-TVYTPMMRHKMNQPGKSLGV 186
            +++GGY++Y+ VHE +   I  +  +    P+  AG+   +  M +  + +   +L  
Sbjct: 129 YVSQGGYANYVRVHEHFVVPIPENIWVE-TLPVGEAGVHEAFERMEKGDV-RYRFTLVG 185

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 98.9 bits (245), Expect = 7e-26
 Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 2/173 (1%)

Query: 14  AARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVG 73
            A      L P    RR  G +DV I I +CGVC++D+   R++   + YP VPGHEIVG
Sbjct: 5   GAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVG 64

Query: 74  IVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGT-ITK 132
            V  VG  V ++  GD VGVG  V+SC+ CE C DGLE +C     T+N+   D    T 
Sbjct: 65  RVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTL 124

Query: 133 GGYSSYIVVHERYCYKI-ANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSL 184
           GGYS  IVVHERY  +I   D  +  A  +  A   +    ++++     ++L
Sbjct: 125 GGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVKYRFVIDNRTL 177

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 6e-21
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 15/187 (8%)

Query: 15  ARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGI 74
           A +    LS          + +V I I    VC+ D         +  +P++ GH   GI
Sbjct: 12  AWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGI 71

Query: 75  VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF------------- 121
           V+ VG  V++ K GD V +  Y+  C +C++C +     C +   T              
Sbjct: 72  VESVGEGVTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT 130

Query: 122 -NAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
                    +    +S Y VV +    KI     +        +   +          + 
Sbjct: 131 CKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKS 190

Query: 181 GKSLGVI 187
            +++  I
Sbjct: 191 IRTVVKI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 83.4 bits (205), Expect = 8e-20
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 27/194 (13%)

Query: 15  ARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGI 74
           A      L           + +V I +    VC  D+    +    + +P+V GHE  GI
Sbjct: 14  AWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI-NATDPKKKALFPVVLGHECAGI 72

Query: 75  VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR------------------ 116
           V+ VG  V+ FK GD V +  +   C+ C+ C   L   C +                  
Sbjct: 73  VESVGPGVTNFKPGDKV-IPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRT 131

Query: 117 SVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHK 176
           S +T         +    +S Y VV E    ++ +++ L L         ++        
Sbjct: 132 SRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESIN-----DA 186

Query: 177 MN--QPGKSLGVIG 188
           ++  + GKS+  I 
Sbjct: 187 IDLMKEGKSIRTIL 200

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 83.0 bits (204), Expect = 8e-20
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 15/187 (8%)

Query: 15  ARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGI 74
           A + +  L           ++++ I I   GVC+ D+           +P+V GHE  GI
Sbjct: 14  AWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGI 73

Query: 75  VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCAR--------------SVYT 120
           V+ VG  V+ F+ G+ V +  +++ C +C +C       C +              + +T
Sbjct: 74  VESVGPGVTEFQPGEKV-IPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT 132

Query: 121 FNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
                    +    +S Y VV++    KI     L           +V   +   K  + 
Sbjct: 133 CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKC 192

Query: 181 GKSLGVI 187
            +++  +
Sbjct: 193 IRTVLSL 199

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 79.6 bits (195), Expect = 1e-18
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 33  GSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           G   V + I   GVC+ D+             P +PGHE VG V  VG  V+R K GD V
Sbjct: 29  GPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRV 88

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
           G+     +C  CE+C  G E  C     T  +++         Y+ Y++    Y   +  
Sbjct: 89  GIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGG-------YAEYVLADPNYVGILPK 141

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI 187
           +    +    L     +   M        G+ +  +
Sbjct: 142 NVKATIHPGKLDDINQILDQM--RAGQIEGRIVLEM 175

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 73.1 bits (178), Expect = 3e-16
 Identities = 38/218 (17%), Positives = 67/218 (30%), Gaps = 44/218 (20%)

Query: 8   KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP 67
           KD +              +   R    D+V + +   G+C+   +  R++      P V 
Sbjct: 2   KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCH-TDLIVRDQKYPVPLPAVL 60

Query: 68  GHEIVGIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCA------------ 115
           GHE  GI++ +G NV+  +VGDHV +      C  C  CN G   +C+            
Sbjct: 61  GHEGSGIIEAIGPNVTELQVGDHVVL--SYGYCGKCTQCNTGNPAYCSEFFGRNFSGADS 118

Query: 116 ----RSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTP 171
                       +  D    +  +++Y +  E    K+  D+P                 
Sbjct: 119 EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAF------- 171

Query: 172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTV 209
                               +   A+   K   L   +
Sbjct: 172 ------------------DEINQAAIDSRKGITLKPII 191

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 72.3 bits (176), Expect = 4e-16
 Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS 211
              LA  APLLCAGIT Y+P+   +   PGK +GV+G+GGLGHM +K   A G +V    
Sbjct: 3   QEQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVA-F 60

Query: 212 TSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVY 271
           T++  K EA   LGAD+ V S + ++M A  KS DFI++T +  H  D + +LLK  G  
Sbjct: 61  TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTM 120

Query: 272 VLVGFPSKVK 281
            LVG P+   
Sbjct: 121 TLVGAPATPH 130

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 42/195 (21%), Positives = 65/195 (33%), Gaps = 26/195 (13%)

Query: 15  ARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGI 74
           A +P   LS  +       + +V I I   G+C +D      +   SK+P++ GHE VG+
Sbjct: 14  AWEPHKPLSLETITVAPPKAHEVRIKILASGICGSD-SSVLKEIIPSKFPVILGHEAVGV 72

Query: 75  VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAI---DADGTIT 131
           V+ +G  V+  K GD V +  +V  C  C  C       C ++          D     T
Sbjct: 73  VESIGAGVTCVKPGDKV-IPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT 131

Query: 132 KGG-----------YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQP 180
             G           ++ Y VV +    KI     +            +            
Sbjct: 132 CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQI----------NK 181

Query: 181 GKSLGVIGLGGLGHM 195
              L   G G    M
Sbjct: 182 AFELLSSGQGVRSIM 196

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.5 bits (169), Expect = 5e-15
 Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 15  ARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGI 74
               +  L    F    +    + + I   GVC +DV   R +      P++ GHE  G 
Sbjct: 10  LEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGR 69

Query: 75  VKEVGHNVSRFKVGDHV----GVGTYVNSCRDCEYCNDGLEVHC--ARSVYTFNAIDADG 128
           V EV                  V     +C +C +C    E +    R VY  N   ++ 
Sbjct: 70  VVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEY 129

Query: 129 TITKGGYSSYIVVH-ERYCYKIANDYPLALAAPLLCAGITV 168
              +G YSS+IV+  E    K++    +    PL  A   +
Sbjct: 130 PHLRGCYSSHIVLDPETDVLKVSEK--ITHRLPLKEANKAL 168

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.2 bits (168), Expect = 6e-15
 Identities = 43/174 (24%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 16  RDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVP-GHEIVGI 74
                 L      +  +   +V + I  CGVC+ D+              +  GHE VGI
Sbjct: 7   EQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGI 66

Query: 75  VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGG 134
           V+EVG  V+  KVGD VG+    ++C  C+YC  G E  C                  GG
Sbjct: 67  VEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY-------SVDGG 119

Query: 135 YSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG 188
           Y+ Y      Y  KI ++  +    PL          +   K    G+ +  + 
Sbjct: 120 YAEYCRAAADYVVKIPDNTIIE-VQPLEKINEVFDRML---KGQINGRVVLTLE 169

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.5 bits (169), Expect = 7e-15
 Identities = 18/181 (9%), Positives = 42/181 (23%), Gaps = 12/181 (6%)

Query: 29  RRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
           R       V + +    +C +D    R +        +     +                
Sbjct: 27  RGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG--LVLGHEITGEVIEKGRDVENLQI 84

Query: 89  DHVGVGTYVNSCRDCEYCNDGLE---VHCARSVYTFNAIDADGTITKGGYSSYIVVH--E 143
             +    +  +C  C  C +      +    +         D     GG + Y++V   +
Sbjct: 85  GDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYAD 144

Query: 144 RYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAF 203
               K+ +         +               ++   +  G    G      +   K F
Sbjct: 145 FNLLKLPDRDKAMEKINIAEVVGVQV-----ISLDDAPRGYGEFDAGVPKKFVIDPHKTF 199

Query: 204 G 204
            
Sbjct: 200 S 200

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 66.6 bits (161), Expect = 6e-14
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 11/160 (6%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGD---SKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
              D+V + + + G+C +DV +  +        K P+V GHE  G V +VG NV   K G
Sbjct: 23  PKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKG 82

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D V V   V  CR C++C +G    C    +             G  + Y V    +C+K
Sbjct: 83  DRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFCAT------PPDDGNLARYYVHAADFCHK 135

Query: 149 IANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG 188
           + ++  +                    +  +   ++ V+ 
Sbjct: 136 LPDNCNVKQLVTHSFKLEQTVDAFEAARK-KADNTIKVMI 174

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 4/139 (2%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           P+ L  PL C   T     +      P  S    G G +G  A+   K  G ++ +    
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 214 TSKKEEALSLLGADKFVVSSDLEQMKAL----GKSLDFIIDTASGDHPFDAYMSLLKVAG 269
              + E    LGA   + S   + + A+       ++F +++          +  L + G
Sbjct: 62  VESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILG 121

Query: 270 VYVLVGFPSKVKFSPASLN 288
              +VG P     +   +N
Sbjct: 122 KIAVVGAPQLGTTAQFDVN 140

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.2 bits (155), Expect = 4e-13
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           P  LAAPLLC G+TVY+P++R+    PGK +G++GLGG+G M     KA G   T + + 
Sbjct: 2   PSHLAAPLLCGGLTVYSPLVRNGC-GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISR 59

Query: 214 TSKKEEALSLLGADKFVVSS---DLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGV 270
           +S+K E    +GAD ++ +    D  +       L  +  ++  D  F+     +KV G 
Sbjct: 60  SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGR 119

Query: 271 YVLVGFP 277
            V +  P
Sbjct: 120 IVSISIP 126

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 61.1 bits (147), Expect = 4e-12
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 155 LALAAPLLCAGITVYTPMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           L   APL  AGIT Y  + +  +   PG  + ++G+GGLGH+AV+  K       +    
Sbjct: 6   LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV 65

Query: 214 TSKKEEALSLLGADKFVVSSD----LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAG 269
             +K +    LGAD  V +             G+ ++  +D        D    LL   G
Sbjct: 66  KEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMG 125

Query: 270 VYVLVGFPSKVKFSPASL 287
             ++VG+  +++F    +
Sbjct: 126 RLIIVGYGGELRFPTIRV 143

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 5e-12
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 7/138 (5%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           P      + C   T Y   ++    +PG +  V GLGG+G   +   K+ G +  +    
Sbjct: 3   PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL 62

Query: 214 TSKKEEALSLLGADKFVVSSDLEQMKALGKSL-------DFIIDTASGDHPFDAYMSLLK 266
              K E    +GA + +   D  +  +   S                 +   DA  S   
Sbjct: 63  NKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHM 122

Query: 267 VAGVYVLVGFPSKVKFSP 284
             G  V+VG P   K   
Sbjct: 123 NYGTSVVVGVPPSAKMLT 140

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 60.6 bits (146), Expect = 7e-12
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKK 217
           +  + C   T Y   +      PG +  V GLGG+G  A+   KA G +  +   +   K
Sbjct: 5   SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK 64

Query: 218 EEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIIDTASGDHPFDAYMSLLKVAGV 270
                 LGA + +   D ++           G     +      +   +A  S    +GV
Sbjct: 65  FPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGV 124

Query: 271 YVLVGFPSKVKFSP 284
            V++G  S  +  P
Sbjct: 125 TVVLGLASPNERLP 138

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 61.0 bits (147), Expect = 8e-12
 Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 17/187 (9%)

Query: 15  ARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGI 74
             +     S          + +V I +   G+C +D             P++ GHE  GI
Sbjct: 14  LWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGI 72

Query: 75  VKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITK-- 132
           V+ +G  V+  + GD V         +     +          +        DGT     
Sbjct: 73  VESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTC 132

Query: 133 -----------GGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPG 181
                        +S Y VV E    KI   + L    PL+   +          + + G
Sbjct: 133 RGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFAL---DPLITHVLPFEKINEGFDLLRSG 189

Query: 182 KSLGVIG 188
           +S+  I 
Sbjct: 190 ESIRTIL 196

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 59.2 bits (142), Expect = 3e-11
 Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGDS--------KYPLVPGHEIVGIVKEVGHNVS 83
                V I +   GVC++DV   + + G+         K P+  GHEI G ++EVG  V 
Sbjct: 23  PKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVV 82

Query: 84  RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVV-H 142
            +  GD V          +C YC  G E  C    +        G    G Y+ Y++V H
Sbjct: 83  GYSKGDLV-AVNPWQGEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPH 134

Query: 143 ERYCYKIANDYPLALAAPLLCAGITVY 169
            +Y YK+    P+      L       
Sbjct: 135 YKYMYKLRRVKPMITKTMKLEEANEAI 161

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 3e-11
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 32  VGSDDVSITITHCGVCYADV---IWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVG 88
            G ++V + +   G+C +DV    + R  +   K P+V GHE  G V++VG +V   K G
Sbjct: 29  PGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPG 88

Query: 89  DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYK 148
           D V +        + E+C  G         +             G    +   +  +CYK
Sbjct: 89  DRVAIEPGAP-RENDEFCKMGRYNLSPSIFFCA------TPPDDGNLCRFYKHNAAFCYK 141

Query: 149 IANDYPLALAAPL-LCAGITVYTPMMRHKMNQPGKSLGVIGLG 190
           + ++    +     L   +  +    +      G  + ++   
Sbjct: 142 LPDNVKPLVTHRFPLEKALEAFETFKK----GLGLKI-MLKCD 179

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           PL     + C   T Y   ++      G +  V GLGG+G   +   KA G    +    
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 214 TSKKEEALSLLGADKFVVSSDLE------QMKALGKSLDFIIDTASGDHPFDAYMSLLKV 267
              K      +GA + V   D +        +     +DF  +           +S  + 
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 121

Query: 268 AGVYVLV 274
           A    ++
Sbjct: 122 AYGVSVI 128

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 57.7 bits (138), Expect = 9e-11
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 18/169 (10%)

Query: 31  AVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH 90
             GS D  +       C +D+          +  ++ GHE VG V EVG  V  FK GD 
Sbjct: 21  VAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDR 80

Query: 91  VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE--RYCYK 148
           V V               G + H    +  +   +    +    +  Y  V++       
Sbjct: 81  VIV-PCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV----FGEYFHVNDADMNLAI 135

Query: 149 IANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAV 197
           +  D  L+     +  G                ++L ++       +  
Sbjct: 136 LPKDVDLSKLVTHVYHGFDH-----------IEEALLLMKDKPKDLIKA 173

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-10
 Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 6/128 (4%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           PL     L C   T Y   +     +PG    V GLGG+G   +   K  G +  +    
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 214 TSKKEEALSLLGADKFVVSSDLEQ------MKALGKSLDFIIDTASGDHPFDAYMSLLKV 267
              K       GA + +   D  +      ++     +D+  +         A +     
Sbjct: 62  NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK 121

Query: 268 AGVYVLVG 275
                +V 
Sbjct: 122 GWGVSVVV 129

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 30  RAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYP---LVPGHEIVGIVKEVGHNVSRFK 86
           R  G  DV + I   GVC+ D+   +    +   P      GHE VG ++EV   V   +
Sbjct: 21  RLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE 80

Query: 87  VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYC 146
            GD V +     +   C  C  G ++HC    +        G    GG++ ++    R  
Sbjct: 81  KGDPV-ILHPAVTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSV 132

Query: 147 YKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGV 186
            K+  D  + +    L     V   + +      G+++ +
Sbjct: 133 IKLPKDVRVEVDIHKLDEINDVLERLEK--GEVLGRAVLI 170

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST 214
           L + A  +C+G T Y     +  +  GK++ + G G LG   V   ++ G    ++   +
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62

Query: 215 SKKEEALSLLGADKFVVSSDLEQMKAL--------GKSLDFIIDTASGDHPFDAYMSLLK 266
             + +    +GAD  +   +    +          G+  DFI++             LL+
Sbjct: 63  PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122

Query: 267 VAGVYVLVGFPSKVKFSPASLNIGNAPLFR 296
             G Y + G        P    +    + +
Sbjct: 123 RGGFYSVAGVAVPQD--PVPFKVYEWLVLK 150

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 51.9 bits (123), Expect = 9e-09
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           PL     L C   T +   +     +PG +  V GLG +G  AV    + G    +    
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 214 TSKKEEALSLLGADKFVVSSDLE-------QMKALGKSLDFIIDTASGDHPFDAYMSLLK 266
              K E   + GA  FV  +D              G     +    +     +A  S LK
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK 121

Query: 267 VAGVYVLVGFPSKVKFSPASLNI 289
             GV VLVG+      +   + +
Sbjct: 122 GWGVSVLVGWTDLHDVATRPIQL 144

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 7/133 (5%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
            L     + C   + Y   +      PG +  V GLG +G  A+   K  G +  +    
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 214 TSKKEEALSLLGADKFVVSSDLEQMKALGKS------LDFIIDTASGDHPFD-AYMSLLK 266
             +K      LGA   +   +L++      +      +D+ +D A        A    + 
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL 121

Query: 267 VAGVYVLVGFPSK 279
             G   +VG    
Sbjct: 122 GWGSCTVVGAKVD 134

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
             A  AP+LCAG+TVY  + +    +PG+ + + G+GGLGH+AV++ +A GL+V  +   
Sbjct: 2   EFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60

Query: 214 TSKKEEALS--LLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVY 271
            +K E A                +E ++        ++ TA  +  F   + + +  G  
Sbjct: 61  DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTI 120

Query: 272 VLVGFPSKVKFSPA 285
            LVG P     +P 
Sbjct: 121 ALVGLPPGDFPTPI 134

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 7/90 (7%), Positives = 21/90 (23%), Gaps = 2/90 (2%)

Query: 95  TYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYP 154
            ++              +     V           + +GG +  + V +     +    P
Sbjct: 41  DHLMRLGAYLTRLHPPFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPLPEGRP 100

Query: 155 LALAAPLLCAGITVYTPMMRHKMNQPGKSL 184
           +             +  ++       GK +
Sbjct: 101 VVGPVFPFAEAEAAFRALLDR--GHTGKVV 128

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 23/157 (14%), Positives = 40/157 (25%), Gaps = 32/157 (20%)

Query: 32  VGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHV 91
           +   DV + + +  V Y D        G           I      V     RF+ GD V
Sbjct: 28  LPEGDVLVRVHYSSVNYKDG-LASIPDGKIVKTYPFVPGIDLAGVVVSSQHPRFREGDEV 86

Query: 92  GVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAN 151
                           +    H                   GGYS Y  +H  +   +  
Sbjct: 87  -----------IATGYEIGVTHF------------------GGYSEYARLHGEWLVPLPK 117

Query: 152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG 188
                +A  +  A +         +    G+++  + 
Sbjct: 118 GLE-RIAQEISLAELPQAL-KRILRGELRGRTVVRLA 152

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 10/149 (6%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
           PL  A  +     T +       + + G S+ VIG+G +G M +   K  G    +   S
Sbjct: 2   PLENAVMITDMMTTGFHGAELADI-EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 214 TSKKEEALSLLGADKFVVSSDLEQMKALGK-----SLDFIIDTASGDHPFDAYMSLLKVA 268
                EA    GA   +   +      + K      +D +I    G       + ++K  
Sbjct: 61  RPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG 120

Query: 269 GVYVLVGFPSKVKFSPASLNIGNAPLFRF 297
           G+   + +      S  +L I        
Sbjct: 121 GIISNINYHG----SGDALLIPRVEWGCG 145

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS 213
               AAP+ CAG+T Y  +      +PG+ + + G+GGLGH+AV++ KA GLNV  +   
Sbjct: 2   SFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG 60

Query: 214 TSKKEEALSLLGADKFVVS--SDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVY 271
             K E A  L              + MK     +   + TA     F +  + ++  G  
Sbjct: 61  DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGAC 120

Query: 272 VLVGFP 277
           VLVG P
Sbjct: 121 VLVGLP 126

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 3/103 (2%)

Query: 96  YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPL 155
            +             +   A            G    GG S Y  V   +   +  +  L
Sbjct: 62  LILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSL 121

Query: 156 ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVK 198
             A       I      +      PG    ++     G + VK
Sbjct: 122 KEAMVDQLLTIVDREVSLEET---PGALKDILQNRIQGRVIVK 161

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKK 217
            A +     T Y  ++     + G+S+ V G  G   +A            + +  T + 
Sbjct: 6   GAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG 65

Query: 218 EEALSLLGADKFVVSSDLEQMKALGKSL----DFIIDTASGDHPFDAYMSLLKVAGVYVL 273
           ++ +   GA +     ++  +  + K +      II     +      +SLL   G  ++
Sbjct: 66  QKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIV 125

Query: 274 VGFPSKVKFSPASLNIGNAPLFRF 297
           VG    ++ +P       + +   
Sbjct: 126 VGSRGTIEINPRDTMAKESSIIGV 149

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 8/143 (5%)

Query: 158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKK 217
           AA    A +T +  +       PG+ + +    G   MA              +  +  K
Sbjct: 3   AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAK 62

Query: 218 EEALSLLGADKFVVSSDL----EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVL 273
            E LS LG +    S  +    E ++        ++  +         + +L   G ++ 
Sbjct: 63  REMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIE 122

Query: 274 VGFPSKVKFSPASLNIGNAPLFR 296
           +G         A  ++G A L +
Sbjct: 123 LGKKD----VYADASLGLAALAK 141

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGG-LGHMAVKFGKAFGLNVTVLSTSTSK 216
           AA     G+TVY  + +    +P +        G +G +A ++ KA G  +     +  K
Sbjct: 6   AAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK 65

Query: 217 KEEALSLLGADKFVVSSDL----EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYV 272
            + AL   GA + +   +        +  G     ++  + G   ++  +  L+  G+ V
Sbjct: 66  AQSALK-AGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMV 124

Query: 273 L 273
            
Sbjct: 125 S 125

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHM 195
           AAPL C+GIT Y  + +  +  P K+L V+G GG    
Sbjct: 6   AAPLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGT 42

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 156 ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS 215
           AL  PL            R    Q G ++ VIG G +G ++V   KA+G  V   + S  
Sbjct: 7   ALLEPLSVGVHAC-----RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR 61

Query: 216 KKEEALSLLGADKFVVSSDLEQM---------KALGKSLDFIIDTASGDHPFDAYMSLLK 266
           + E A +  GAD  +V    ++           A+G   +  ID +  +      +++ +
Sbjct: 62  RLEVAKN-CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITR 120

Query: 267 VAGVYVLVGFPSK 279
             G  +LVG  S+
Sbjct: 121 TGGTLMLVGMGSQ 133

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 154 PLALA-APLLCAGITVYTPMMRHKMNQPGKSLGVI-GLGGLGHMAVKFGKAFGLNVTVLS 211
           PL+LA   +   G+T Y  ++     + G+++ V    G +G +  +  K  G  V   +
Sbjct: 2   PLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA 61

Query: 212 TSTSKKEEALSLLGADKFVVSSDLEQMKALGKS----LDFIIDTASGDHPFDAYMSLLKV 267
            S  K      +     F   +     +AL K+     D   D   G    +  +S +K 
Sbjct: 62  GSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV-GGEFLNTVLSQMKD 120

Query: 268 AGVYVLVGF 276
            G   + G 
Sbjct: 121 FGKIAICGA 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.97
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.97
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.97
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.97
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.97
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.97
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.94
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.92
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.92
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.91
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.91
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.91
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.91
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.9
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.89
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.89
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.89
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.89
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.89
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.88
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.88
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.88
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.88
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.88
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.87
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.87
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.87
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.86
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.85
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.83
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.83
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.83
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.8
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.59
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.54
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.57
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.39
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.27
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.02
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.98
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.98
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.95
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.93
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.87
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.83
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.82
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.81
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.81
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.79
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.79
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.76
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.75
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.73
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.73
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.71
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.66
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.65
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.64
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.64
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.62
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.62
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.61
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.59
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.59
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.59
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.57
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.56
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.52
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.51
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.49
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.46
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.44
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.43
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.41
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.41
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.4
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.38
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.36
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.35
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.34
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.34
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.32
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.31
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.31
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.31
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.3
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.28
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.27
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.26
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.26
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.26
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.25
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.24
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.18
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.15
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.12
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.08
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.04
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.03
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.03
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.01
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.01
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.0
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.95
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.92
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.91
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.88
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.86
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.84
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.8
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.79
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.79
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.76
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.75
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.75
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.75
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.74
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.74
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.73
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.65
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.61
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.53
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.53
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.52
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.48
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.46
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.44
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.36
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.35
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.33
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.32
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.32
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.32
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.29
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.27
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.26
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.26
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.19
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.17
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.14
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.13
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.13
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.13
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.09
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.09
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.08
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.07
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.98
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.93
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.89
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.86
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	95.86
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.77
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.75
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.72
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.72
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.68
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.68
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.64
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.58
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.56
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.54
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.5
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.49
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.47
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.42
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	95.39
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.39
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.35
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.31
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.3
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.26
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.24
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.23
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.22
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.17
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.98
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.98
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.97
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.96
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.95
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.93
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.92
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	94.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.9
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.86
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.84
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.8
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.78
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.68
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	94.63
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.63
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.58
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.53
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.52
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.52
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.51
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.45
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	94.44
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	94.36
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.35
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.32
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.25
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	94.2
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.16
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.13
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.12
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.85
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	93.84
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.82
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	93.8
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.79
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	93.76
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.72
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	93.69
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	93.66
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.65
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.65
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.59
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.59
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.58
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.53
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.43
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.42
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.38
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	93.38
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.37
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.32
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.31
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	93.29
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.25
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.2
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.18
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.07
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.03
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.02
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.98
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	92.95
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	92.95
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.95
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.92
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	92.92
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.88
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.86
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.84
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.83
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	92.78
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.76
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.66
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.66
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	92.65
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	92.65
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.56
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.55
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	92.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.38
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.3
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.28
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	92.27
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.16
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.04
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.03
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	91.95
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.95
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.89
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.86
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.76
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.73
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.58
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.51
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.5
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	91.5
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.48
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.32
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.28
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	91.13
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	91.09
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	91.08
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.07
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.07
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	91.04
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	91.03
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.97
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.88
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.88
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	90.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.69
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.62
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	90.6
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.56
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.54
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.48
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.35
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	90.28
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	90.24
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.13
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.92
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.68
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	89.62
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.56
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	89.56
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.41
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.4
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.33
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.24
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.09
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	89.06
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	89.03
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	88.98
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.98
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.96
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	88.86
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.85
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.82
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	88.78
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.73
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.65
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	88.6
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.42
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.34
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.24
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	88.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	88.18
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.78
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.53
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.38
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.2
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	87.04
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	86.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	86.8
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	86.72
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	86.63
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.56
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.48
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.46
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	86.24
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.2
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.1
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	86.05
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.01
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.85
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.79
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.52
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	85.39
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	85.28
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	85.24
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	85.22
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	85.22
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	85.09
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	84.89
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.28
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	84.11
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	84.08
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	83.96
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	83.65
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	83.6
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.6
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.56
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	82.82
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.26
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.96
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	81.9
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	81.48
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.4
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.13
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	80.27

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=1.5e-35  Score=243.68  Aligned_cols=184  Identities=20%  Similarity=0.261  Sum_probs=162.1

Q ss_pred             cccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCC
Q 022313            3 SETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNV   82 (299)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v   82 (299)
                      +-.++||++++.+....+++++++++.|+|+++||||||+++++|++|++.+.|......+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            45689999999997777789999999999999999999999999999999999877667789999999999999999999


Q ss_pred             CCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccC-CCC-------------ccCCcceeeEEeecceEEE
Q 022313           83 SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA-DGT-------------ITKGGYSSYIVVHERYCYK  148 (299)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~-~g~-------------~~~g~~~~~~~~~~~~~~~  148 (299)
                      ++|++||||++.+. .+|+.|.+|+.++++.|.+.+........ .+.             ...|+|+||+.++++++++
T Consensus        82 ~~~~~GdrV~~~~~-~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          82 TEFQPGEKVIPLFI-SQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CSCCTTCEEEECSS-CCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             ceecCCCEEEEeee-ccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence            99999999987665 59999999999999999886544322221 111             1259999999999999999


Q ss_pred             cCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEE
Q 022313          149 IANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       149 ~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                      +|++++++++|++.+++.|+++++...+..+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999999988887899999984

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-34  Score=233.84  Aligned_cols=183  Identities=28%  Similarity=0.454  Sum_probs=157.2

Q ss_pred             ccccccceEEeeeCC--CCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCC
Q 022313            4 ETASKDCLGWAARDP--SGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      |..|.+++++....+  ...+++.+++.++++++||||||++++||++|++++.|.++..++|+++|||++|+|+++|++
T Consensus         1 m~~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~   80 (192)
T d1piwa1           1 MSYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPK   80 (192)
T ss_dssp             CCTTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTT
T ss_pred             CCCCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhcccc
Confidence            455666777777433  344667777777789999999999999999999999998877789999999999999999998


Q ss_pred             C-CCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccc
Q 022313           82 V-SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAP  160 (299)
Q Consensus        82 v-~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~  160 (299)
                      + +.+++||||.+.+....|+.|.+|+.+.++.|.+......+...+|...+|+|+||+.+++++++++|++++++.|+.
T Consensus        81 v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal  160 (192)
T d1piwa1          81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPV  160 (192)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEES
T ss_pred             cccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHH
Confidence            8 569999999998888899999999999999999987776666667778899999999999999999999999988776


Q ss_pred             cchhhHHHHHHhhhccCCCCCCEEEEE
Q 022313          161 LLCAGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       161 ~~~~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                      +.+.+.|||+++.+. .++++++|+|.
T Consensus       161 ~~~~~~ta~~~l~~~-~vk~g~~Vvv~  186 (192)
T d1piwa1         161 GEAGVHEAFERMEKG-DVRYRFTLVGY  186 (192)
T ss_dssp             SHHHHHHHHHHHHHT-CCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHHh-CCCCCCEEEEE
Confidence            665678999999754 55999999884

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=1.9e-34  Score=233.21  Aligned_cols=169  Identities=22%  Similarity=0.341  Sum_probs=147.8

Q ss_pred             EEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCcccC
Q 022313           12 GWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      +.+++ .++++++++++.|+++++|||||+++++||++|++.+.+...   ..+.|.++|||++|+|+++|+++++|++|
T Consensus         4 aAVl~-g~~~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~G   82 (178)
T d1e3ja1           4 SAVLY-KQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKG   82 (178)
T ss_dssp             EEEEE-ETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             EEEEE-cCCcEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCC
Confidence            34454 467799999999999999999999999999999998876532   34578899999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|++.+.. +|+.|..|..+.+..|.+..+...      ....|+|+||+.+|+++++++|++++++++|.+++.+.|+
T Consensus        83 drV~~~~~~-~~~~c~~c~~g~~~~c~~~~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta  155 (178)
T d1e3ja1          83 DRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFCAT------PPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQT  155 (178)
T ss_dssp             CEEEECCEE-CCSSSHHHHTTCGGGCTTCEETTB------TTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGH
T ss_pred             CEEEECccc-ccCCccccccCCccccccccceec------cccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHH
Confidence            999887665 899999999999999988755421      2346999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEEcC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGL  189 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~  189 (299)
                      |++++.... ++|++|+|+|+
T Consensus       156 ~~a~~~~~~-~~g~~VlVig~  175 (178)
T d1e3ja1         156 VDAFEAARK-KADNTIKVMIS  175 (178)
T ss_dssp             HHHHHHHHH-CCTTCSEEEEE
T ss_pred             HHHHHHhCC-CCCCEEEEEcc
Confidence            999987665 99999999875

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=7.1e-34  Score=232.95  Aligned_cols=182  Identities=20%  Similarity=0.248  Sum_probs=158.1

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      +.+||++|+.+....++|+++++|.|+|+++||||||++++||++|++++.|.+....+|.++|||++|+|+++|+++++
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            46789999999877888999999999999999999999999999999999998777789999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCcccccccccc-ccccCC-------------CCccCCcceeeEEeecceEEEcC
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDAD-------------GTITKGGYSSYIVVHERYCYKIA  150 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~~~-------------g~~~~g~~~~~~~~~~~~~~~~p  150 (299)
                      +++||+|++.+.. .|+.|.+|+.+.+..|.+..... .+...+             +....|+|+||+.+|+.+++++|
T Consensus        82 ~~~GdrV~v~~~~-~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIP-QCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSC-CCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEcccc-ccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECC
Confidence            9999999887664 99999999999999998753321 111111             11224999999999999999999


Q ss_pred             CCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEE
Q 022313          151 NDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       151 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                      ++++++++|++.+++.|++.++.....-+.+++|+|+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999999776665788999884

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.6e-33  Score=225.95  Aligned_cols=172  Identities=24%  Similarity=0.384  Sum_probs=150.4

Q ss_pred             cccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCc
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      |.+|+++.+.+..+++++++++.|.++++||||||+++++|++|++.+.|.++ ...+|.++|||++|+|+++|++++++
T Consensus         3 P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~~   82 (175)
T d1llua1           3 PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRV   82 (175)
T ss_dssp             CSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             chhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCcccc
Confidence            34445566655556699999999999999999999999999999999999875 45689999999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||||.+.+....|+.|.+|+.+.+..|.+....       |...+|+|+||+.+++++++++|++++++.++++.+++
T Consensus        83 ~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~-------G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~  155 (175)
T d1llua1          83 KEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNT-------GYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDI  155 (175)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGH
T ss_pred             ccCCEEEeccccccCCccccccCCccccccccccc-------ccccccccceEEEechHHEEECCCCCChhHHHHHHhHH
Confidence            99999988777779999999999999999987554       44567999999999999999999999999998888999


Q ss_pred             HHHHHHhhhccCCCCCCEEEEE
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~  187 (299)
                      .|++++++ ... .+|++|||+
T Consensus       156 ~t~~~~~~-~g~-~~G~~VLVl  175 (175)
T d1llua1         156 NQILDQMR-AGQ-IEGRIVLEM  175 (175)
T ss_dssp             HHHHHHHH-TTC-CSSEEEEEC
T ss_pred             HHHHHHHH-hCC-CCCCEEEeC
Confidence            99998875 344 579999984

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=5.2e-33  Score=227.10  Aligned_cols=175  Identities=25%  Similarity=0.468  Sum_probs=144.5

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCccc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      +++++..+...+++|++++++.|+++++|||||++++++|++|++++.|.++ .++|.++|||++|+|+++|+++++|++
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~i~GHE~~G~V~~vG~~v~~~~v   80 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQV   80 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc-ccCCcccccceEEEeeecCccceeEcc
Confidence            3456666767778899999999999999999999999999999999998776 578999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCcccccccc-ccccccCCC---------------CccCCcceeeEEeecceEEEcCC
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVY-TFNAIDADG---------------TITKGGYSSYIVVHERYCYKIAN  151 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~g---------------~~~~g~~~~~~~~~~~~~~~~p~  151 (299)
                      ||+|+. +.. +|+.|.+|++++++.|++... .+.|...+|               ....|+|+||+.++..+++++|+
T Consensus        81 GDrVv~-~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~  158 (194)
T d1f8fa1          81 GDHVVL-SYG-YCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  158 (194)
T ss_dssp             TCEEEE-CCC-CCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             Cceeee-ecc-cccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence            999954 444 899999999999999997521 122222222               12358999999999999999999


Q ss_pred             CCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEE
Q 022313          152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVL  210 (299)
Q Consensus       152 ~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~  210 (299)
                      +++++++                         +++.|+|++|++|+|+++.+|++.++.
T Consensus       159 ~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iia  192 (194)
T d1f8fa1         159 DFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIK  192 (194)
T ss_dssp             TCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEE
T ss_pred             CCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEE
Confidence            8876543                         345678999999999999999955443

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=3.4e-33  Score=230.30  Aligned_cols=181  Identities=23%  Similarity=0.297  Sum_probs=153.9

Q ss_pred             cccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCC
Q 022313            3 SETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNV   82 (299)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v   82 (299)
                      +.-++||++|+.+.+..+++++++++.|+|+++||||||++++||++|++.++|.++ ..+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V   80 (202)
T d1e3ia1           2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGV   80 (202)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCc
Confidence            446789999999977767899999999999999999999999999999999998775 5679999999999999999999


Q ss_pred             CCcccCCEEEEeccccCCCCCccccCCCCcccccccccccccc------------------CCCCccCCcceeeEEeecc
Q 022313           83 SRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAID------------------ADGTITKGGYSSYIVVHER  144 (299)
Q Consensus        83 ~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~------------------~~g~~~~g~~~~~~~~~~~  144 (299)
                      +++++||+|++.+. ..|+.|.+|+.+.++.|.+.........                  ..+....|+|+||+.+++.
T Consensus        81 ~~~~~GdrV~~~~~-~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~  159 (202)
T d1e3ia1          81 TNFKPGDKVIPFFA-PQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEA  159 (202)
T ss_dssp             CSCCTTCEEEECSS-CCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             eeccCCCEEEEEee-ccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehh
Confidence            99999999977665 5999999999999999987533211110                  0011235999999999999


Q ss_pred             eEEEcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEc
Q 022313          145 YCYKIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIG  188 (299)
Q Consensus       145 ~~~~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G  188 (299)
                      +++++|++++++.++++.+++.++++++...   ++|++|.|+.
T Consensus       160 ~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~~---k~G~~V~vi~  200 (202)
T d1e3ia1         160 NLARVDDEFDLDLLVTHALPFESINDAIDLM---KEGKSIRTIL  200 (202)
T ss_dssp             GEEECCTTSCGGGGEEEEEEGGGHHHHHHHH---HTTCCSEEEE
T ss_pred             hEEECCCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEEE
Confidence            9999999999999999999999998888653   7898888863

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=9.7e-33  Score=221.43  Aligned_cols=165  Identities=22%  Similarity=0.341  Sum_probs=144.9

Q ss_pred             EEeeeCCCCcccceeeecCCC-CCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCccc
Q 022313           12 GWAARDPSGVLSPYSFNRRAV-GSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRFKV   87 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~p~~-~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~~~   87 (299)
                      ++.+....++|++++++.|++ .++||||||++++||++|++.+.|.+.   ...+|.++|||++|+|+++|++++++++
T Consensus         2 A~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~   81 (171)
T d1h2ba1           2 AARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEK   81 (171)
T ss_dssp             EEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCT
T ss_pred             EEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCCC
Confidence            455655566699999999986 589999999999999999999988654   3567999999999999999999999999


Q ss_pred             CCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHH
Q 022313           88 GDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGIT  167 (299)
Q Consensus        88 Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~t  167 (299)
                      ||||++.+. ..|++|..|+.+.+++|.+..+.       |....|+|+||+.++++.++++|++++++.++++.+++.|
T Consensus        82 GdrV~~~~~-~~cg~~~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~t  153 (171)
T d1h2ba1          82 GDPVILHPA-VTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEIND  153 (171)
T ss_dssp             TCEEEECSC-BCCSCSHHHHTTCGGGCTTCBCB-------TTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHH
T ss_pred             CCEEEEcCc-cCCCCcccccccccccccccccc-------eeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHH
Confidence            999988666 48999999999999999987654       3456799999999999999999999999989999999999


Q ss_pred             HHHHhhhccCCCCCCEEEE
Q 022313          168 VYTPMMRHKMNQPGKSLGV  186 (299)
Q Consensus       168 a~~al~~~~~~~~g~~vlI  186 (299)
                      +|++++. ..+ .|++|||
T Consensus       154 a~~al~~-~~~-~G~~VlI  170 (171)
T d1h2ba1         154 VLERLEK-GEV-LGRAVLI  170 (171)
T ss_dssp             HHHHHHT-TCC-SSEEEEE
T ss_pred             HHHHHHh-cCC-CCCEEEe
Confidence            9999975 454 7999997

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=7e-32  Score=218.02  Aligned_cols=173  Identities=20%  Similarity=0.249  Sum_probs=141.1

Q ss_pred             cccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC---
Q 022313            7 SKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS---   83 (299)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~---   83 (299)
                      .||++++.+.+..+++++++++.|+++++||||||.++|||++|+++++|.++..++|.++|||++|+|+++|+++.   
T Consensus         2 ~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~~   81 (184)
T d1vj0a1           2 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLN   81 (184)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCTT
T ss_pred             CceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEeccccccc
Confidence            56778888866667799999999999999999999999999999999999887678999999999999999999886   


Q ss_pred             --CcccCCEEEEeccccCCCCCccccCCCCcc-ccccccc-cccccCCCCccCCcceeeEEee-cceEEEcCCCCCcccc
Q 022313           84 --RFKVGDHVGVGTYVNSCRDCEYCNDGLEVH-CARSVYT-FNAIDADGTITKGGYSSYIVVH-ERYCYKIANDYPLALA  158 (299)
Q Consensus        84 --~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~g~~~~~~~~~-~~~~~~~p~~~~~~~a  158 (299)
                        .+++||+|.+.+.. +|+.|.+|+.+.+.+ |.+.... +.+.........|+|+||+.++ +.+++++|++++++. 
T Consensus        82 ~~~~~~Gd~V~~~~~~-~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~-  159 (184)
T d1vj0a1          82 GELLKPGDLIVWNRGI-TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL-  159 (184)
T ss_dssp             SCBCCTTCEEEECSEE-CCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEEE-
T ss_pred             cccccceeeeEecccc-ccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHHH-
Confidence              46899999887664 999999999999765 6654321 1111112234689999999996 578999999998764 


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEE
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                           ++.+|++++..... ++|++|||+
T Consensus       160 -----pl~~A~~a~~~~~~-~~G~~VlI~  182 (184)
T d1vj0a1         160 -----PLKEANKALELMES-REALKVILY  182 (184)
T ss_dssp             -----EGGGHHHHHHHHHH-TSCSCEEEE
T ss_pred             -----HHHHHHHHHHHhCC-CcCCEEEEe
Confidence                 34566778876665 999999997

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.97  E-value=1.5e-31  Score=219.63  Aligned_cols=181  Identities=20%  Similarity=0.311  Sum_probs=150.1

Q ss_pred             CcccccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCC
Q 022313            2 TSETASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      ++|.+.||++++.+...++++++++++.|+|+++||||||.++|||++|++.+.|.++ .++|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~-~~~P~i~GHE~~G~Vv~vG~~   79 (198)
T d2jhfa1           1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV-TPLPVIAGHEAAGIVESIGEG   79 (198)
T ss_dssp             CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC-CCSSBCCCCSEEEEEEEECTT
T ss_pred             CCCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcc-cccceecccceeEEEEecCcc
Confidence            4788999999999988888899999999999999999999999999999999999876 568999999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccC-C--------C-----CccCCcceeeEEeecceEE
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA-D--------G-----TITKGGYSSYIVVHERYCY  147 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~-~--------g-----~~~~g~~~~~~~~~~~~~~  147 (299)
                      ++++++||+|++.+. ..|+.|.+|+.+.+..|.+.......... +        |     ....|+|+||+.+|+.+++
T Consensus        80 v~~~~vGdrV~v~~~-~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~  158 (198)
T d2jhfa1          80 VTTVRPGDKVIPLFT-PQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA  158 (198)
T ss_dssp             CCSCCTTCEEEECSS-CCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             ccCcCCCCEEEEeee-ecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeE
Confidence            999999999987665 49999999999999999987654322111 1        1     1224899999999999999


Q ss_pred             EcCCCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEE
Q 022313          148 KIANDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       148 ~~p~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                      ++|++++++.++....++.+...+.   ..+++|++|.|+
T Consensus       159 ~~p~~~~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi  195 (198)
T d2jhfa1         159 KIDAAFALDPLITHVLPFEKINEGF---DLLRSGESIRTI  195 (198)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEE
Confidence            9999998877665555544433322   224788888886

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.6e-32  Score=217.63  Aligned_cols=163  Identities=40%  Similarity=0.641  Sum_probs=136.6

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGD   89 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd   89 (299)
                      |+|+..+...++|++++++.|+|.++||||||.+++||++|++.+.|.+....+|.++|||++|+|+++|++++++++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            46677777888899999999999999999999999999999999999877778899999999999999999999999999


Q ss_pred             EEEEeccccCCCCCccccCCCCccccccccccccccC-CCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           90 HVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDA-DGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        90 ~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      +|.+.+....|++|.+|+.+.+++|.+....+.+... .+....|+|+||+.+|+++++++|++.....   +..++.++
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~~---~a~~l~~a  157 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMI---RADQINEA  157 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEEE---CGGGHHHH
T ss_pred             EEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcChh---HhchhHHH
Confidence            9999888889999999999999999987554444332 2345579999999999999999996543322   22345566


Q ss_pred             HHHhhhc
Q 022313          169 YTPMMRH  175 (299)
Q Consensus       169 ~~al~~~  175 (299)
                      ++++.+.
T Consensus       158 ~~a~~~a  164 (179)
T d1uufa1         158 YERMLRG  164 (179)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            7766544

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-32  Score=220.58  Aligned_cols=171  Identities=19%  Similarity=0.300  Sum_probs=143.8

Q ss_pred             cceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC---CCCCCccccccccEEEEEecCCCCCc
Q 022313            9 DCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG---DSKYPLVPGHEIVGIVKEVGHNVSRF   85 (299)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~---~~~~p~~lG~e~~G~V~~vG~~v~~~   85 (299)
                      .+.++++. .++++++++++.|+++++||||||++++||++|++.+.+...   ..+.|.++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~-gp~~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVH-GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEE-ETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEe-CCCeEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            45566664 567899999999999999999999999999999999875421   34678999999999999999999999


Q ss_pred             ccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhh
Q 022313           86 KVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAG  165 (299)
Q Consensus        86 ~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~  165 (299)
                      ++||+|++.+.. .|+.|.+|+.+.++.|.+..+...      ...+|+|+||+.+++++++++|+++++++++.++  +
T Consensus        86 ~~GdrV~~~~~~-~cg~c~~c~~G~~~~c~~~~~~g~------~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p--l  156 (185)
T d1pl8a1          86 KPGDRVAIEPGA-PRENDEFCKMGRYNLSPSIFFCAT------PPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP--L  156 (185)
T ss_dssp             CTTCEEEECSEE-CSSCCHHHHTTCGGGCTTCEETTB------TTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEE--G
T ss_pred             cccccceeccee-ccccchhhccchhchhccceeeec------ccccccceEEEEEchHHEEECCCCCCHHHHHHHH--H
Confidence            999999887765 899999999999999988755421      2356899999999999999999999999987654  4


Q ss_pred             HHHHHHhhhccCCCCCCEEEEEcCCh
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVIGLGG  191 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~G~g~  191 (299)
                      .+++++++.... ++|++||| |+|+
T Consensus       157 ~~a~~a~~~~~~-~~G~~VlI-g~GP  180 (185)
T d1pl8a1         157 EKALEAFETFKK-GLGLKIML-KCDP  180 (185)
T ss_dssp             GGHHHHHHHHHT-TCCSEEEE-ECCT
T ss_pred             HHHHHHHHHhCC-CCCCEEEE-EeCC
Confidence            566777776665 89999988 6653

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.97  E-value=4.5e-34  Score=234.50  Aligned_cols=187  Identities=19%  Similarity=0.210  Sum_probs=151.8

Q ss_pred             eEEeeeCCCCcccceeeecCCC-------CCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCC
Q 022313           11 LGWAARDPSGVLSPYSFNRRAV-------GSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~-------~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      +++.+. .++++++++++.|++       .++||+|||++++||++|++.+.|.++ .++|.++|||++|+|+++|++++
T Consensus         3 kA~v~~-~~~~le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~~V~   80 (201)
T d1kola1           3 RGVVYL-GSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDVE   80 (201)
T ss_dssp             EEEEEE-ETTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTCC
T ss_pred             EEEEEe-CCCceEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeeccccccc
Confidence            455554 556799999999965       359999999999999999999998776 57899999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccc-ccccc--CCCCccCCcceeeEEeec--ceEEEcCCCCCcccc
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYT-FNAID--ADGTITKGGYSSYIVVHE--RYCYKIANDYPLALA  158 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~--~~g~~~~g~~~~~~~~~~--~~~~~~p~~~~~~~a  158 (299)
                      +|++||||.+.+. .+|+.|.+|+++.++.|...... ..+..  ..+....|+|+||+.+|.  .+++++|++.+..++
T Consensus        81 ~~~vGdrV~v~~~-~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~  159 (201)
T d1kola1          81 NLQIGDLVSVPFN-VACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEK  159 (201)
T ss_dssp             SCCTTCEEECCSE-ECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHT
T ss_pred             cccccceeEEeee-eeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCChHHH
Confidence            9999999987664 59999999999999998775332 22211  112345799999999984  369999998777778


Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL  205 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~  205 (299)
                      +++.+.+.++++++..... +.+    ++|+|++|++++|+||.+||
T Consensus       160 ~~~~~~~~~~~~a~~~~~~-~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         160 INIAEVVGVQVISLDDAPR-GYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             CCHHHHHTEEEECGGGHHH-HHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCe----EEeeCHHHHHHHHHHHHcCC
Confidence            8888888888888765543 333    35889999999999998875

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=6.6e-31  Score=210.95  Aligned_cols=169  Identities=29%  Similarity=0.518  Sum_probs=141.7

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCC-CCCCCCccccccccEEEEEecCCCCCcccC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKH-GDSKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~-~~~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      |+++.+....+++++++++.|+++++||||||++++||++|++.+.+.. .....|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            4566665556679999999999999999999999999999999887653 356789999999999999999999999999


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|.+.+....|+.|..|..+.++.|.+....       |...+|+|+||+.+++++++++|++++++.| ++. .+.++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A-~l~-~~~~~  151 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKNA-------GYSVDGGYAEYCRAAADYVVKIPDNTIIEVQ-PLE-KINEV  151 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGCEECCTTCCEEEE-EGG-GHHHH
T ss_pred             eEEeeccccccccccccccCCCcccccccccc-------ceeccCccccceEecHHHEEECCCCCCHHHH-HHH-HHHHH
Confidence            99998777778999999999999999987554       4456799999999999999999999998655 454 34566


Q ss_pred             HHHhhhccCCCCCCEEEEEcC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGL  189 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~  189 (299)
                      ++++.. .. .+|++|||+|.
T Consensus       152 ~~~~~~-~~-~~G~tVlViG~  170 (171)
T d1rjwa1         152 FDRMLK-GQ-INGRVVLTLED  170 (171)
T ss_dssp             HHHHHT-TC-CSSEEEEECCC
T ss_pred             HHHHHh-cC-CCCCEEEEeCC
Confidence            666543 34 35999999985

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.97  E-value=3.7e-31  Score=216.80  Aligned_cols=178  Identities=23%  Similarity=0.308  Sum_probs=144.5

Q ss_pred             cccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCC
Q 022313            5 TASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      -+.++++++.+..+.+++++++++.|+|+++||||||.+++||++|++++.|.++ .++|.++|||++|+|+++|+++.+
T Consensus         4 ~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~-~~~P~i~GHE~~G~Vv~~G~~v~~   82 (198)
T d1p0fa1           4 GKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVTC   82 (198)
T ss_dssp             TSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc-cccccccceeeeeeeeecCccccc
Confidence            4577899988876667899999999999999999999999999999999998776 578999999999999999999999


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCcccccccccc-ccccCCCC-------------ccCCcceeeEEeecceEEEcC
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTF-NAIDADGT-------------ITKGGYSSYIVVHERYCYKIA  150 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~~~g~-------------~~~g~~~~~~~~~~~~~~~~p  150 (299)
                      +++||+|++.+. .+|+.|.+|+++.+++|.+..... .+...++.             ...|+|+||+.+++..++++|
T Consensus        83 ~~~GdrV~~~~~-~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip  161 (198)
T d1p0fa1          83 VKPGDKVIPLFV-PQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID  161 (198)
T ss_dssp             CCTTCEEEECSS-CCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred             CcCCCEEEEEee-ccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECC
Confidence            999999988666 499999999999999998764332 11111111             124899999999999999999


Q ss_pred             CCCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHH
Q 022313          151 NDYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGH  194 (299)
Q Consensus       151 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~  194 (299)
                      ++++++.++...+.+.+.          .++.+|+|.|+|++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~v----------~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         162 PKINVNFLVSTKLTLDQI----------NKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TTSCGGGGEEEEECGGGH----------HHHHHHTTTSSCSEEE
T ss_pred             CCCCHHHHHHhhcchhhc----------CCCCEEEEECCCcceE
Confidence            999988766555443332          2334477778887764

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.97  E-value=5.7e-33  Score=223.39  Aligned_cols=169  Identities=20%  Similarity=0.203  Sum_probs=133.9

Q ss_pred             eEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCE
Q 022313           11 LGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDH   90 (299)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~   90 (299)
                      +++.+. .++++++++++.|+++++|||||+++++||++|++.+.+.....+.|.++|||++|+|+++|+++++|++|||
T Consensus         2 Ka~v~~-~~~~l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGdr   80 (177)
T d1jqba1           2 KGFAML-GINKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDR   80 (177)
T ss_dssp             EEEEEE-ETTEEEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTCE
T ss_pred             eEEEEE-eCCCeEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCCc
Confidence            445553 5677999999999999999999999999999999877665555678999999999999999999999999999


Q ss_pred             EEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeec--ceEEEcCCCCCcccccccchhhHHH
Q 022313           91 VGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHE--RYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        91 V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~--~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |++.+.. +|+.|.+|+.+.+.+|......+.    .|...+|+|+||+.+|.  .+++++|+++++++++.....   +
T Consensus        81 V~v~~~~-~cg~c~~C~~g~~~~c~~~~~~~~----~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~---~  152 (177)
T d1jqba1          81 VIVPCTT-PDWRSLEVQAGFQQHSNGMLAGWK----FSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYH---G  152 (177)
T ss_dssp             EEECSCC-CCSSSHHHHTTCGGGTTSTTTTCC----BTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEE---S
T ss_pred             EEEeeee-ccccccchhhhhhccccccccccc----ccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHH---H
Confidence            9886664 999999999999999987643211    13346799999999985  469999999998877643322   1


Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHH
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMA  196 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a  196 (299)
                      ++++        ++.++++|+|++|+.+
T Consensus       153 ~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         153 FDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             GGGH--------HHHHHHHHHCCTTCSE
T ss_pred             HHHh--------cCceEEECCCHHHhhe
Confidence            2222        2336677777776644

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=7.5e-30  Score=205.84  Aligned_cols=167  Identities=25%  Similarity=0.397  Sum_probs=136.4

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC--------CCCCCccccccccEEEEEecCC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG--------DSKYPLVPGHEIVGIVKEVGHN   81 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~--------~~~~p~~lG~e~~G~V~~vG~~   81 (299)
                      |+|+.+....++|++++++.|+++++||||||.+++||++|++++.|.++        ..++|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            35666655556699999999999999999999999999999999988643        3468999999999999999999


Q ss_pred             CCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecce-EEEcCCCCCcccccc
Q 022313           82 VSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERY-CYKIANDYPLALAAP  160 (299)
Q Consensus        82 v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~p~~~~~~~aa~  160 (299)
                      +.+|++||+|++.+.. .|+.|.+|+.++++.|.+..+.       |....|+|+||+.+++.+ ++++|+..+.+.|+.
T Consensus        81 v~~~~~GdrV~~~~~~-~c~~c~~~~~g~~~~c~~~~~~-------g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~  152 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQ-GEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTM  152 (177)
T ss_dssp             CCSCCTTCEEEECCEE-CCSSSHHHHTTCGGGCSSCEEB-------TTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEE
T ss_pred             ccccccCceEeeeecc-ccccccccccccccccCCccee-------eeccccccccEEEEEhHHeEEECCCCChHHHHHH
Confidence            9999999999887664 8999999999999999987543       334569999999998655 556655444444444


Q ss_pred             cchhhHHHHHHhhhccCCCCCCEEEE
Q 022313          161 LLCAGITVYTPMMRHKMNQPGKSLGV  186 (299)
Q Consensus       161 ~~~~~~ta~~al~~~~~~~~g~~vlI  186 (299)
                      ...++.+++++++....  .|++|||
T Consensus       153 ~~~~~~~a~~~~~~~~~--~G~~VlI  176 (177)
T d1jvba1         153 KLEEANEAIDNLENFKA--IGRQVLI  176 (177)
T ss_dssp             EGGGHHHHHHHHHTTCC--CSEEEEE
T ss_pred             HHHHHHHHHHHHHhhcc--cCCceEC
Confidence            45688899999876664  4888887

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=193.52  Aligned_cols=148  Identities=20%  Similarity=0.317  Sum_probs=128.5

Q ss_pred             ccccceEEeeeCCCCcccce-eeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCC
Q 022313            6 ASKDCLGWAARDPSGVLSPY-SFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVS   83 (299)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~   83 (299)
                      ++||+..+.-+++++.+++. +.+.|+++++||||||+++++|++|.+.+.|.+.. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           1 KLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             CceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceee
Confidence            46776666655566778874 68999999999999999999999999999887653 46788999999999999999999


Q ss_pred             CcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccch
Q 022313           84 RFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLC  163 (299)
Q Consensus        84 ~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~  163 (299)
                      +|++||||+...                                  ...|+|+||+.++++.++++|+++++++||++++
T Consensus        81 ~~~vGdrV~~~~----------------------------------~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~  126 (150)
T d1yb5a1          81 AFKKGDRVFTSS----------------------------------TISGGYAEYALAADHTVYKLPEKLKPVIGSQYPL  126 (150)
T ss_dssp             TCCTTCEEEESC----------------------------------CSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEG
T ss_pred             ccccCccccccc----------------------------------cccccccccccccccccccccCCCCHHHHHHhhh
Confidence            999999996421                                  2459999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhccCCCCCCEEEEE
Q 022313          164 AGITVYTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       164 ~~~ta~~al~~~~~~~~g~~vlI~  187 (299)
                      ...|+|+++...+....|+++||+
T Consensus       127 ~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         127 EKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             GGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             hhhhehhhheEEcCcccCCEEEEC
Confidence            999999988777777999999884

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-26  Score=181.34  Aligned_cols=136  Identities=19%  Similarity=0.248  Sum_probs=117.1

Q ss_pred             eCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecCCCCCcccCCEEEEec
Q 022313           16 RDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGHNVSRFKVGDHVGVGT   95 (299)
Q Consensus        16 ~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~~v~~~~~Gd~V~~~~   95 (299)
                      ++.++.|++++.+.|+++++||+|||+++++|++|++++.|.+....+|.++|||++|+|+++|+++++|++||+|+.. 
T Consensus         9 ~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~-   87 (147)
T d1qora1           9 HGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYA-   87 (147)
T ss_dssp             CCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEES-
T ss_pred             cCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeecccccccceeeee-
Confidence            3455668999999999999999999999999999999999988877889999999999999999999999999999631 


Q ss_pred             cccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccc--cccchhhHHHHHHhh
Q 022313           96 YVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALA--APLLCAGITVYTPMM  173 (299)
Q Consensus        96 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~al~  173 (299)
                                                       ....|+|+||..++.+.++++|++++++.+  ++++....++++++.
T Consensus        88 ---------------------------------~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~  134 (147)
T d1qora1          88 ---------------------------------QSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEIL  134 (147)
T ss_dssp             ---------------------------------CCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHH
T ss_pred             ---------------------------------ccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence                                             123589999999999999999999988755  455666777778776


Q ss_pred             hccCCCCCCEEEE
Q 022313          174 RHKMNQPGKSLGV  186 (299)
Q Consensus       174 ~~~~~~~g~~vlI  186 (299)
                      ... +++|++|||
T Consensus       135 ~~~-~~~G~~VLI  146 (147)
T d1qora1         135 ESR-ATQGSSLLI  146 (147)
T ss_dssp             HTT-CCCBCCEEE
T ss_pred             HhC-CCCCCEEEe
Confidence            654 599999997

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-25  Score=177.18  Aligned_cols=143  Identities=19%  Similarity=0.321  Sum_probs=128.5

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +|+++||++++++.|||+++.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~-~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccc-cccCcccccc
Confidence            5789999999999999999987777899999999997 9999999999999999999999998888777 6899999999


Q ss_pred             CCCHHHHHH---h--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeee
Q 022313          232 SSDLEQMKA---L--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       232 ~~~~~~~~~---~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +++.+..++   .  .+++|++||++|+.. ++.++++++++|+++.+|.....++++..++.|+++++|+
T Consensus        80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~k~~~i~g~  149 (174)
T d1yb5a2          80 HREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGV  149 (174)
T ss_dssp             TTSTTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEEEEEEECCCCSCEEECTHHHHTTTCEEEEC
T ss_pred             cccccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCCCEEEEEecCCCCCCCHHHHHHCCCEEEEE
Confidence            887644333   3  367999999999764 9999999999999999998877899999999999999997

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=1.5e-25  Score=175.75  Aligned_cols=148  Identities=19%  Similarity=0.274  Sum_probs=118.8

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      ||+..+.-.+++..+++++.+.|+++++||||||+++++|++|++.+.|.++ ....|+++|+|++|+|++  ..+..|+
T Consensus         4 ~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~~   81 (152)
T d1xa0a1           4 FQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRFR   81 (152)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSCC
T ss_pred             eEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCccc
Confidence            3444443333344567889999999999999999999999999998888765 346899999999999999  5567899


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|......                             -+....|+|+||+.+|+++++++|++++ .+||+++++..
T Consensus        82 ~g~~v~~~~~~-----------------------------~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~  131 (152)
T d1xa0a1          82 EGDEVIATGYE-----------------------------IGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAEL  131 (152)
T ss_dssp             TTCEEEEESTT-----------------------------BTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGH
T ss_pred             cCCEEEEecCc-----------------------------cccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHH
Confidence            99999632110                             0224569999999999999999999998 47888999999


Q ss_pred             HHHHHhhhccCCCCCCEEEEEc
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIG  188 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G  188 (299)
                      |+|.++.....+ +|++|||+|
T Consensus       132 ta~~~~~~~~~~-~G~tVL~l~  152 (152)
T d1xa0a1         132 PQALKRILRGEL-RGRTVVRLA  152 (152)
T ss_dssp             HHHHHHHHHTCC-CSEEEEECC
T ss_pred             HHHHHHHHhcCC-CCCEEEEcC
Confidence            998888777774 599999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.3e-25  Score=169.76  Aligned_cols=130  Identities=16%  Similarity=0.315  Sum_probs=113.0

Q ss_pred             ceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCC-CCCCccccccccEEEEEecCCCCCcccC
Q 022313           10 CLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGD-SKYPLVPGHEIVGIVKEVGHNVSRFKVG   88 (299)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~-~~~p~~lG~e~~G~V~~vG~~v~~~~~G   88 (299)
                      |+++.+.+..+++++++.+.|+++++||+||++++++|++|++.+.|.+.. ..+|+++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            356666555667999999999999999999999999999999999988753 468999999999999           39


Q ss_pred             CEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhHHH
Q 022313           89 DHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGITV  168 (299)
Q Consensus        89 d~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta  168 (299)
                      |+|+..                                   ...|+|+||+.++++.++++|+++++++||++++.+.|+
T Consensus        70 d~V~~~-----------------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta  114 (131)
T d1iz0a1          70 RRYAAL-----------------------------------VPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAA  114 (131)
T ss_dssp             EEEEEE-----------------------------------CSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHH
T ss_pred             ceEEEE-----------------------------------eccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHH
Confidence            999642                                   235899999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCEEEEE
Q 022313          169 YTPMMRHKMNQPGKSLGVI  187 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~  187 (299)
                      |+++...+  +.|++||++
T Consensus       115 ~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         115 FRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             HHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHhcc--cCCCEEEEC
Confidence            99997654  568998863

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=7.3e-25  Score=175.25  Aligned_cols=142  Identities=23%  Similarity=0.324  Sum_probs=122.2

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +++++||++++++.|||+++++. .+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|++++++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~-~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~-~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRA-QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHT-TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh-CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc-cccccceeee
Confidence            57899999999999999999875 5699999999997 9999999999999999999999999888888 6999999999


Q ss_pred             CCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          232 SSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       232 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+........+++|+|||++|. . +..++++++++|+++.+|..  ...++++..++.|++++.||.
T Consensus        79 ~~~~~~~~~~~~g~D~v~d~~G~-~-~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~  145 (171)
T d1iz0a2          79 YAEVPERAKAWGGLDLVLEVRGK-E-VEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFW  145 (171)
T ss_dssp             GGGHHHHHHHTTSEEEEEECSCT-T-HHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECC
T ss_pred             hhhhhhhhhccccccccccccch-h-HHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEe
Confidence            87654433345889999999884 3 89999999999999999988  566899999999999999984

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.2e-24  Score=169.36  Aligned_cols=145  Identities=41%  Similarity=0.662  Sum_probs=127.2

Q ss_pred             CCCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          152 DYPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       152 ~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +.+++.+|++.|+..|+|++++... +++|++|+|+|+|++|++++|+|+..|++++++++++++++.+ +++|++++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLRHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHHTT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHhC-CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH-hccCCcEEEE
Confidence            4567788999999999999997654 5999999999999999999999999999999999999988877 7999999999


Q ss_pred             CCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          232 SSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       232 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+.+......+++|++||++|+..++..++++++++|+++.+|..  ....++...+++|++++.|..
T Consensus        81 ~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~  149 (168)
T d1uufa2          81 SRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSM  149 (168)
T ss_dssp             TTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECC
T ss_pred             CchhhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEe
Confidence            9988777667789999999999988899999999999999999987  456778889999999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.91  E-value=9.7e-24  Score=169.17  Aligned_cols=144  Identities=22%  Similarity=0.335  Sum_probs=126.4

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      ++++.|++++|++.|+|+++.+...+++|++|+|+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a-~~~Ga~~~i~   79 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQLGATHVIN   79 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHHTCSEEEE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHH-HHcCCeEEEe
Confidence            46788999999999999998877778999999999999999999999999999 566677788788877 7999999999


Q ss_pred             CCCHHH---HHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          232 SSDLEQ---MKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       232 ~~~~~~---~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +++.+.   ++++. +++|+||||+|....++.+++.++++|+++.+|..   ...++++.+++.|+++++|.
T Consensus        80 ~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs  152 (174)
T d1f8fa2          80 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGV  152 (174)
T ss_dssp             TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEEC
T ss_pred             CCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEE
Confidence            887543   34443 68999999999988899999999999999999976   56789999999999999995

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=2.5e-24  Score=172.14  Aligned_cols=144  Identities=19%  Similarity=0.318  Sum_probs=124.8

Q ss_pred             CCcccccccchhhHHHHHHhh---hccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE
Q 022313          153 YPLALAAPLLCAGITVYTPMM---RHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~---~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      +|+++||+++++++|||++++   .....++|++|||+|+ |++|.+++|+|+..|++|+++++++++.+.+ +++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~-~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH-Hhcccce
Confidence            588999999999999997754   4566688999999987 9999999999999999999999999999888 7999999


Q ss_pred             EEeCCCHH--HHHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          229 FVVSSDLE--QMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       229 v~~~~~~~--~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++++++..  ..... .+++|+|||++|+.. +..++++|+++|+++.+|..  ...++++..++.|+++++|..
T Consensus        80 vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~  153 (176)
T d1xa0a2          80 VLAREDVMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGID  153 (176)
T ss_dssp             EEECC---------CCSCCEEEEEECSTTTT-HHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECC
T ss_pred             eeecchhHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEe
Confidence            99887532  12222 378999999999987 99999999999999999998  678899999999999999963

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=8.6e-24  Score=168.19  Aligned_cols=144  Identities=27%  Similarity=0.445  Sum_probs=128.8

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      +|+++||+++|++.|+|+++++.. +++|++|+|+|+|++|++++|+|+..|++|+++++++++++.+ +++|+++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~-~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a-~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTN-ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA-RKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh-hccCccccccc
Confidence            578999999999999999998765 5999999999999999999999999999999999999999888 79999999988


Q ss_pred             CCHHHH---HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          233 SDLEQM---KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       233 ~~~~~~---~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      .+.+..   .+...++|.+++++++...++.++++++++|+++.+|.. ...++++..++.|+++++|..
T Consensus        79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~  148 (166)
T d1llua2          79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSI  148 (166)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEe
Confidence            875443   334567888888888888899999999999999999988 888999999999999999853

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=7.4e-26  Score=179.42  Aligned_cols=154  Identities=20%  Similarity=0.217  Sum_probs=126.1

Q ss_pred             ccccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCC
Q 022313            6 ASKDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSR   84 (299)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~   84 (299)
                      ++||+..+.-.+.+..+++++++.|+++++||||||++++||++|++.+.|.++ ....|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            466777666655667799999999999999999999999999999998888766 345678999999999998  45678


Q ss_pred             cccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchh
Q 022313           85 FKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCA  164 (299)
Q Consensus        85 ~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  164 (299)
                      +++||+|......                             .|....|+|+||+.+|++.++++|+++|+++||.+++.
T Consensus        80 ~~~g~~v~~~~~~-----------------------------~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~  130 (162)
T d1tt7a1          80 FAEGDEVIATSYE-----------------------------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLL  130 (162)
T ss_dssp             CCTTCEEEEESTT-----------------------------BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCST
T ss_pred             cccceeeEeeecc-----------------------------ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHH
Confidence            9999999643210                             13356799999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCCCCCEEEEEcC-Ch
Q 022313          165 GITVYTPMMRHKMNQPGKSLGVIGL-GG  191 (299)
Q Consensus       165 ~~ta~~al~~~~~~~~g~~vlI~G~-g~  191 (299)
                      .+|+|.++..... ..+++|||.|+ |+
T Consensus       131 ~~ta~~~~~~~~~-~~~~~Vli~ga~G~  157 (162)
T d1tt7a1         131 TIVDREVSLEETP-GALKDILQNRIQGR  157 (162)
T ss_dssp             TSEEEEECSTTHH-HHHHHTTTTCCSSE
T ss_pred             HHHHHHHHHhcCC-CCCCEEEEECCcce
Confidence            9999987655433 55677777776 53

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.3e-23  Score=163.14  Aligned_cols=135  Identities=16%  Similarity=0.220  Sum_probs=108.5

Q ss_pred             ccceEEeeeCCCCcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCC-CCCCCccccccccEEEEEecCCCCCcc
Q 022313            8 KDCLGWAARDPSGVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG-DSKYPLVPGHEIVGIVKEVGHNVSRFK   86 (299)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~-~~~~p~~lG~e~~G~V~~vG~~v~~~~   86 (299)
                      ||+..+.-.+++..+++++++.|+++++||+|||++++||++|.+.+.|.++ ....|.++|+|++|+|+++|.  ..++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            3444443333444578899999999999999999999999999999988765 346789999999999999866  4799


Q ss_pred             cCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCcccccccchhhH
Q 022313           87 VGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPLALAAPLLCAGI  166 (299)
Q Consensus        87 ~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~  166 (299)
                      +||+|.+....                             .|....|+|+||+.+|+++++++|+++|+++||+++++..
T Consensus        79 ~g~~v~~~~~~-----------------------------~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~  129 (146)
T d1o89a1          79 AGQEVLLTGWG-----------------------------VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNF  129 (146)
T ss_dssp             TTCEEEEECTT-----------------------------BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHH
T ss_pred             ceeeEEeeccc-----------------------------ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHH
Confidence            99999753210                             1334579999999999999999999999999999999888


Q ss_pred             HHHHHhh
Q 022313          167 TVYTPMM  173 (299)
Q Consensus       167 ta~~al~  173 (299)
                      ||+..+.
T Consensus       130 tA~~~~~  136 (146)
T d1o89a1         130 AEAIINN  136 (146)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            8765543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=5.6e-23  Score=165.88  Aligned_cols=143  Identities=25%  Similarity=0.401  Sum_probs=123.4

Q ss_pred             cccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC
Q 022313          155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       155 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                      ++.+|++.|++.|+|+++.+...+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++.
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~   81 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNRR   81 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTTCSEEEETT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccc-ccccceEEEecc
Confidence            456788999999999999888778999999999999999999999999998 899999999999888 799999999887


Q ss_pred             CHH---H---HHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChh-hhhcCCeeeeeec
Q 022313          234 DLE---Q---MKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPA-SLNIGNAPLFRFK  298 (299)
Q Consensus       234 ~~~---~---~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~-~l~~~~~~~~g~~  298 (299)
                      +.+   .   +.+.  ..++|+|||++|++.+++.++++++++|+++.+|..   .+.++++. .++.|+++++|+.
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~  158 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIW  158 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECC
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEE
Confidence            632   2   2333  357999999999988799999999999999999976   45666665 4778999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.7e-23  Score=166.84  Aligned_cols=142  Identities=33%  Similarity=0.572  Sum_probs=125.5

Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                      +.+.||++.|+..|+|+++++.. +++|++|+|+|+|++|++++|+|+..|++|+++++++++++.+ +++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a-~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNG-CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA-MKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTT-CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhC-cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHh-hccCCcEEeecc
Confidence            45778999999999999998765 5999999999999999999999999999999999999999988 799999999876


Q ss_pred             CH-HHHHHhcCCccEEEEcCCCch--hHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          234 DL-EQMKALGKSLDFIIDTASGDH--PFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       234 ~~-~~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +. +..+...+++|.++|+++...  .+..++++++++|+++.+|.. ...++++..++.|++++.|.
T Consensus        80 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs  147 (168)
T d1piwa2          80 EEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYS  147 (168)
T ss_dssp             GTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEEC
T ss_pred             chHHHHHhhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEE
Confidence            54 445566789999999988643  467899999999999999988 77789999999999999985

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.89  E-value=8.7e-23  Score=163.26  Aligned_cols=144  Identities=28%  Similarity=0.405  Sum_probs=125.4

Q ss_pred             CcccccccchhhHHHHHHhhhcc-CCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          154 PLALAAPLLCAGITVYTPMMRHK-MNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~-~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      .+.++|+++|++.|+|+++.+.. .+++|++|+|+|+|++|++++|+++..|+ +|+++++++++++.+ +++|++++++
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~-~~~ga~~~i~   83 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA-ERLGADHVVD   83 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH-HHTTCSEEEE
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH-hhcccceeec
Confidence            35688999999999999998765 36999999999999999999999999998 777788888888877 7999999998


Q ss_pred             CCCHH--HHHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCCCceeeChhhhhcCCeeeeeec
Q 022313          232 SSDLE--QMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       232 ~~~~~--~~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.+..  ...+.  ..++|+|||++|+..+++.++++++++|+++.+|.....++++..+++|+++++|+.
T Consensus        84 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs~  154 (172)
T d1h2ba2          84 ARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIRVISSEVSFEGSL  154 (172)
T ss_dssp             TTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSCCCCCHHHHHHTTCEEEECC
T ss_pred             CcccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcccccCCHHHHHhCCcEEEEEE
Confidence            87632  23333  368999999999988799999999999999999987778899999999999999964

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.89  E-value=1.1e-22  Score=162.65  Aligned_cols=141  Identities=18%  Similarity=0.277  Sum_probs=120.4

Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      ++++||++.|++.|+|+++.+...+++|++|+|+|+|++|++++|+++..|+ +|++++.++++++.+ +++|+++++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~~Ga~~~i~~   80 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KALGATDCLNP   80 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSEEECG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HHhCCCcccCC
Confidence            4678999999999999998777778999999999999999999999999999 788888888888877 79999999975


Q ss_pred             CCH----HHHH-H-hcCCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC-CceeeChhhhhcCCeeeee
Q 022313          233 SDL----EQMK-A-LGKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP-SKVKFSPASLNIGNAPLFR  296 (299)
Q Consensus       233 ~~~----~~~~-~-~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~-~~~~~~~~~l~~~~~~~~g  296 (299)
                      ...    .... + ..+++|++|||+|.+.+++.++++++++ |+++.+|.. ...++++..++. +.+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~~-~k~i~G  151 (174)
T d1e3ia2          81 RELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSING  151 (174)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHT-TCEEEE
T ss_pred             ccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHhc-cCEEEE
Confidence            432    2222 2 2479999999999999899999999996 999999998 788898887765 346664

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.89  E-value=8.1e-23  Score=165.89  Aligned_cols=145  Identities=18%  Similarity=0.235  Sum_probs=123.9

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEE-cC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHH---HHHhcCCC
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVI-GL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEE---ALSLLGAD  227 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~-G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~---~~~~~g~~  227 (299)
                      +|+++||+++++++|||+++.....+++|++++|+ |+ |++|++++|+|+..|++|++++++++..++   ..+++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            57899999999999999999988888999999997 55 899999999999999999999877654432   33789999


Q ss_pred             EEEeCCCHH------HHHHh----cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeee
Q 022313          228 KFVVSSDLE------QMKAL----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLF  295 (299)
Q Consensus       228 ~v~~~~~~~------~~~~~----~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~  295 (299)
                      +++++++..      .+.+.    .+++|++||++|++. +..++++|+++|+++.+|..  .+.+++...++.|+++++
T Consensus        81 ~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~  159 (189)
T d1gu7a2          81 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSA  159 (189)
T ss_dssp             EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEE
T ss_pred             EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEE
Confidence            999875431      22322    468999999999876 89999999999999999987  678899999999999999


Q ss_pred             eec
Q 022313          296 RFK  298 (299)
Q Consensus       296 g~~  298 (299)
                      ||.
T Consensus       160 G~~  162 (189)
T d1gu7a2         160 GFW  162 (189)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            983

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=160.60  Aligned_cols=143  Identities=20%  Similarity=0.230  Sum_probs=124.7

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +|+++|| +..++.++|+++++... +++++|+|+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|++++++
T Consensus         1 vS~e~Aa-l~epla~a~~a~~~~~~-~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~Ga~~~~~   77 (171)
T d1pl8a2           1 VTFEEGA-LIEPLSVGIHACRRGGV-TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQ   77 (171)
T ss_dssp             SCHHHHH-HHHHHHHHHHHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEE
T ss_pred             CCHHHHH-HHHHHHHHHHHHHHhCC-CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHhCCccccc
Confidence            4678877 44688899999987765 999999999999999999999999999 899999999999988 7999999998


Q ss_pred             CCCHH--H-HHH----hcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          232 SSDLE--Q-MKA----LGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       232 ~~~~~--~-~~~----~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ..+.+  . .+.    ...++|++||++|++.+++.++++++++|+++.+|.. ...++++..++.|+++++|..
T Consensus        78 ~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          78 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECC
T ss_pred             ccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEe
Confidence            76532  1 222    2468999999999998899999999999999999998 778999999999999999864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=6.3e-23  Score=163.76  Aligned_cols=144  Identities=28%  Similarity=0.458  Sum_probs=127.7

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEE
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFV  230 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~  230 (299)
                      +|+.+||+++|++.|||+++++.. ++++++|+|+|+ |++|++++|+++..|+ +|+++++++++++.+ +++|+++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~-~~~Ga~~~i   78 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVI   78 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH-HHcCCceee
Confidence            578899999999999999998765 499999999996 9999999999999996 999999999888888 789999999


Q ss_pred             eCCCHHHH---HHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          231 VSSDLEQM---KAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       231 ~~~~~~~~---~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++.+.+..   .+.  .+++|++|||+|+..+++.++++++++|+++.+|.. ...++++..++.|+++++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~  152 (170)
T d1jvba2          79 NASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSL  152 (170)
T ss_dssp             ETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECC
T ss_pred             ccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEe
Confidence            88765333   333  367999999999988889999999999999999988 789999999999999999853

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.88  E-value=1e-22  Score=164.32  Aligned_cols=138  Identities=18%  Similarity=0.189  Sum_probs=120.0

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH-
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE-  236 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-  236 (299)
                      +++.++++|||+++.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++.+ 
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~Ga~~vi~~~~~~~   86 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNS   86 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH-HhhhhhhhcccccccH
Confidence            4678899999999998888899999999988 8999999999999999999999999888887 799999999887753 


Q ss_pred             --HHHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--------CceeeChhhhhcCCeeeeeec
Q 022313          237 --QMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--------SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       237 --~~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--------~~~~~~~~~l~~~~~~~~g~~  298 (299)
                        .+.+.  .+++|+|||++|++. ++.++++++++|+++.+|..        .+..+++..+++|+++++||.
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~  159 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFI  159 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECC
T ss_pred             HHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEE
Confidence              22222  368999999999765 99999999999999999964        345577788999999999974

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.88  E-value=1.1e-22  Score=162.77  Aligned_cols=143  Identities=18%  Similarity=0.223  Sum_probs=120.0

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +|+++|+.+++++.|+|++++... +++|++|+|+|+|++|++++|+|+..|+ +|++++.++++++.+ +++|++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~-~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~lGa~~~i~   78 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELAD-IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFYGATDILN   78 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTT-CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHHTCSEEEC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhC-CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH-HhhCcccccc
Confidence            578999999999999999998765 5999999999999999999999999998 799999999888888 7999999998


Q ss_pred             CCCHH---HHHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChh--hhhcCCeeeeee
Q 022313          232 SSDLE---QMKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPA--SLNIGNAPLFRF  297 (299)
Q Consensus       232 ~~~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~--~l~~~~~~~~g~  297 (299)
                      +++.+   .+.+..  .++|+|||++|++.+++.++++++++|+++.+|..   ...+++..  ....+++++.|.
T Consensus        79 ~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~  154 (174)
T d1jqba2          79 YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGG  154 (174)
T ss_dssp             GGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEB
T ss_pred             ccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEe
Confidence            87643   344443  57999999999988899999999999999999987   33444333  234577888764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.88  E-value=1e-21  Score=156.61  Aligned_cols=143  Identities=22%  Similarity=0.226  Sum_probs=122.8

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      +|+++||.+ .++.++|+++++... +++++|+|+|+|++|++++|+|+..|++|+++++++++++.+ +++|++..++.
T Consensus         1 VS~e~Aal~-ePla~a~~a~~~~~~-~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a-~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHACRRAGV-QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhCC-CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHH-HHcCCcEEEec
Confidence            467887754 578899999987765 999999999999999999999999999999999999999988 68999887754


Q ss_pred             CC----HHH-HHHh----cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          233 SD----LEQ-MKAL----GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       233 ~~----~~~-~~~~----~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      +.    ... ...+    ..++|+|||++|++.+++.++++++++|+++.+|.. ...++++..++.|+++++|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~  153 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVF  153 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECC
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEE
Confidence            43    111 1222    468999999999988899999999999999999988 678899999999999999864

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.88  E-value=8.5e-25  Score=175.57  Aligned_cols=155  Identities=15%  Similarity=0.098  Sum_probs=121.3

Q ss_pred             ccceEEeeeCCCCc---cc--ceeeecCCCCCCcEEEEEceeecccchhhhhccCCC----------CCCCCcccccccc
Q 022313            8 KDCLGWAARDPSGV---LS--PYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHG----------DSKYPLVPGHEIV   72 (299)
Q Consensus         8 ~~~~~~~~~~~~~~---~~--~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~----------~~~~p~~lG~e~~   72 (299)
                      ++++++.+.+.+++   ++  ..+++.|++.++||||||+++++|++|+++++|..+          ....|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            44555555433322   34  457777788999999999999999999999987653          1246788999999


Q ss_pred             EEEEEecCCCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCC
Q 022313           73 GIVKEVGHNVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIAND  152 (299)
Q Consensus        73 G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~  152 (299)
                      |+|+++|..+..++.||+|....                                  ...|+|+||+.+++++++++|++
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~----------------------------------~~~g~~aey~~v~~~~~~~iP~~  127 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSH----------------------------------VNFGTWRTHALGNDDDFIKLPNP  127 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESS----------------------------------SCCCCSBSEEEEEGGGEEEECCH
T ss_pred             cccccccccccccccccceeccc----------------------------------cccccccceeeehhhhccCCCcc
Confidence            99999999999999999996421                                  34588999999999999999998


Q ss_pred             CCcccccccchhhHHHHHHhhh-ccCCCCCCEEEEEcC--ChHHHHHHH
Q 022313          153 YPLALAAPLLCAGITVYTPMMR-HKMNQPGKSLGVIGL--GGLGHMAVK  198 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~-~~~~~~g~~vlI~G~--g~~G~~a~~  198 (299)
                      ++.+.+  +.+..+|+|+++.. ...+++|++|||.|+  |++|++++|
T Consensus       128 ~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         128 AQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             HHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             chhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            765444  34567788888764 455799999999974  679988776

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=6.2e-22  Score=157.47  Aligned_cols=144  Identities=30%  Similarity=0.474  Sum_probs=129.1

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      +|+++||+++|++.|+|++++.... +++++|+|+|+|++|++++++++..|++|+++++++++++.+ +++|+++++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~-~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~-k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTC-CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh-hhcCcceeccc
Confidence            5789999999999999999987765 999999999999999999999999999999999999999888 78999999988


Q ss_pred             CCH---HHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC-CceeeChhhhhcCCeeeeeec
Q 022313          233 SDL---EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP-SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       233 ~~~---~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      .+.   +.+.+...++|.+++++++...++.++++++++|+++.+|.. ...+++...++.|+++++|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~  148 (168)
T d1rjwa2          79 LKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSI  148 (168)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             ccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEe
Confidence            764   334555677777778888888899999999999999999998 888999999999999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=2.7e-22  Score=161.88  Aligned_cols=141  Identities=19%  Similarity=0.234  Sum_probs=118.8

Q ss_pred             ccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC
Q 022313          156 ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD  234 (299)
Q Consensus       156 ~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~  234 (299)
                      ++||+++++++|||+++.+...+++|++|||+|+ |++|++++|+|+..|++++++++++++.+.+ +++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l-~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-SRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccc-ccccccccccCCc
Confidence            4789999999999999988888899999999986 9999999999999999999999998888777 7999999999887


Q ss_pred             HHH---HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          235 LEQ---MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       235 ~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      .+.   +.+..  +++|++||++|+.. ++.++++++++|+++.+|..  .........++.|++++.+|.
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~  149 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVD  149 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECC
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEE
Confidence            544   33433  68999999999865 99999999999999999977  222223334456888888863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.87  E-value=1.4e-21  Score=156.35  Aligned_cols=141  Identities=22%  Similarity=0.296  Sum_probs=117.4

Q ss_pred             cccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCC
Q 022313          155 LALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSS  233 (299)
Q Consensus       155 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~  233 (299)
                      +.+||.+.|++.|+|+++.+...+++|++|+|+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++|+.
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a-~~lGa~~~i~~~   80 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPK   80 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHTTCSEEECGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH-HHcCCcEEEcCC
Confidence            567999999999999998777777999999999999999999999999998 899999999999988 799999999865


Q ss_pred             CHH----HH-HHh-cCCccEEEEcCCCchhHHHHHHhccc-CcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          234 DLE----QM-KAL-GKSLDFIIDTASGDHPFDAYMSLLKV-AGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       234 ~~~----~~-~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~-~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.+    .. .+. .+++|++||++|...+.+.++..+++ +|+++.+|..   ...++++..+ .++++|+|.
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~-~~~~~i~Gs  153 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL-LTGRSLKGS  153 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHH-HTTCEEEEC
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHH-hCCCEEEEE
Confidence            422    22 222 37899999999999888889988877 5999999987   4455555444 467899874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.2e-22  Score=159.64  Aligned_cols=136  Identities=21%  Similarity=0.294  Sum_probs=118.0

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      +|+++||+++++++|||+++.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~-~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH-HhcCCeEEEE
Confidence            5889999999999999999988887899999999977 7899999999999999999999999999888 6899999999


Q ss_pred             CCCHHH---HHHhc--CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcC
Q 022313          232 SSDLEQ---MKALG--KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIG  290 (299)
Q Consensus       232 ~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~  290 (299)
                      +++++.   +.+++  +++|+++|++++.. +..++++++++|+++.+|..  ....++...+..+
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  144 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQK  144 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHT
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcCCeeeecccccCCccccchhhhhcc
Confidence            887543   44443  67999999999775 99999999999999999877  5555666555443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.2e-23  Score=164.29  Aligned_cols=144  Identities=19%  Similarity=0.242  Sum_probs=124.6

Q ss_pred             CCcccccccchhhHHHHHHhh---hccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE
Q 022313          153 YPLALAAPLLCAGITVYTPMM---RHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~---~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      +|+.+||+++++..|||++++   .....+++++|||+|+ |++|.+++|+|+.+|++|+++++++++.+.+ +++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~-~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH-Hhhcccc
Confidence            578999999999999997754   4455456679999987 9999999999999999999999999998888 7999999


Q ss_pred             EEeCCCHHHHHHhc-CCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          229 FVVSSDLEQMKALG-KSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       229 v~~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                      ++++++.+..+.+. ..+|.++|++++.. +..++++++++|+++.+|..  ...++++..++.|++++.||.
T Consensus        80 vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~-~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~  151 (177)
T d1o89a2          80 VLPRDEFAESRPLEKQVWAGAIDTVGDKV-LAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVD  151 (177)
T ss_dssp             EEEGGGSSSCCSSCCCCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECC
T ss_pred             ccccccHHHHHHHHhhcCCeeEEEcchHH-HHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEe
Confidence            99987654433343 46899999999876 99999999999999999988  578889999999999999974

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=155.65  Aligned_cols=143  Identities=20%  Similarity=0.285  Sum_probs=119.9

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEe
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVV  231 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~  231 (299)
                      .+++.||.++|++.|+|+++.+...+++|++|+|+|+|++|+.++|+++..|+ +|++++.++++++.+ +++|+++++|
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~GA~~~in   80 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAVGATECIS   80 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHHTCSEEEC
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH-HhcCCcEEEC
Confidence            35789999999999999998777767999999999999999999999999996 899999999999988 7999999998


Q ss_pred             CCCHH----HHHHh--cCCccEEEEcCCCchhHHHHHHhcccC-cEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          232 SSDLE----QMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVA-GVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       232 ~~~~~----~~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      +.+.+    .+.+.  .+++|+++|++|...+...++..+.++ |+++.+|..   ....+++..++ ++.+++|-
T Consensus        81 ~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs  155 (176)
T d1d1ta2          81 PKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGC  155 (176)
T ss_dssp             GGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEEC
T ss_pred             ccccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEE
Confidence            76532    22222  479999999999998788888777655 999999988   34556655555 67888874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.85  E-value=7.8e-21  Score=152.19  Aligned_cols=143  Identities=17%  Similarity=0.166  Sum_probs=116.6

Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      ++++||+++|++.|+|+++.+...+++|++|+|+|+|++|++++|+++.+|+ +|+++++++++.+.+ +++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-k~lGa~~~i~~   80 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEFGATECINP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHHTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHH-HHhCCcEEEeC
Confidence            5688999999999999999877777999999999999999999999999997 777788888887777 79999999987


Q ss_pred             CCH-----HHHHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC---CceeeChhhhhcCCeeeeee
Q 022313          233 SDL-----EQMKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP---SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       233 ~~~-----~~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+.     ..+++. .+++|++||++|+....+.+..+++++|+++.++..   .....+....+.++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs  154 (176)
T d2fzwa2          81 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGT  154 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEEC
T ss_pred             CchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEE
Confidence            542     122233 378999999999988889999999999888877555   33444444455678898875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.83  E-value=2.6e-20  Score=149.16  Aligned_cols=143  Identities=21%  Similarity=0.238  Sum_probs=116.2

Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      ++++||+++|++.|+|+++.+...+++|++|+|+|+|++|+.++++++..|+ +|+++++++++.+.+ +++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHhCCeeEEec
Confidence            5678999999999999999887778999999999999999999999999997 899999999998888 79999999876


Q ss_pred             CCH----HH-HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEE-EEcCC--CceeeChhhhhcCCeeeeee
Q 022313          233 SDL----EQ-MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYV-LVGFP--SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       233 ~~~----~~-~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v-~~g~~--~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+.    .. .... .+++|++||++|.....+.++..++++|..+ ..+..  ....+....++.++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs  154 (176)
T d2jhfa2          81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGA  154 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEEC
T ss_pred             CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEE
Confidence            542    12 2222 3799999999999988899999999985444 44444  33334444566799999985

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=3.4e-21  Score=152.57  Aligned_cols=134  Identities=20%  Similarity=0.321  Sum_probs=112.5

Q ss_pred             hhhHHHHHH---hhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH-
Q 022313          163 CAGITVYTP---MMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ-  237 (299)
Q Consensus       163 ~~~~ta~~a---l~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-  237 (299)
                      ++..|||.+   +......+++++|||+|+ |++|.+++|+|+.+|++|+.+++++++.+.+ +++|+++++++++... 
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~~   81 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDG   81 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSS
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhch
Confidence            456677755   445555577889999987 9999999999999999999999999999998 7999999987643111 


Q ss_pred             -HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC--CceeeChhhhhcCCeeeeeec
Q 022313          238 -MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASLNIGNAPLFRFK  298 (299)
Q Consensus       238 -~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l~~~~~~~~g~~  298 (299)
                       .... .+++|+|||++|+.. +..++++++++|+++.+|..  ...++++..++.|+++++|+.
T Consensus        82 ~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~  145 (167)
T d1tt7a2          82 TLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGID  145 (167)
T ss_dssp             CCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECC
T ss_pred             hhhcccCCCceEEEecCcHHH-HHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEe
Confidence             1111 368999999999987 99999999999999999999  688999999999999999974

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.83  E-value=3.1e-20  Score=148.56  Aligned_cols=143  Identities=22%  Similarity=0.239  Sum_probs=118.6

Q ss_pred             CcccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeC
Q 022313          154 PLALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVS  232 (299)
Q Consensus       154 ~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~  232 (299)
                      ++++||+++|++.|+|+++.+...+++|++|+|+|+|++|+.+++.++..++ +|+++++++++++.+ +++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a-~~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA-KVFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH-HHcCCcEEEcC
Confidence            5788999999999999999777777999999999999999999999999988 799999999999888 79999999987


Q ss_pred             CCHH----HHHHh--cCCccEEEEcCCCchhHHHHHHhcccCcE-EEEEcCC-CceeeChhhhhcCCeeeeee
Q 022313          233 SDLE----QMKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGV-YVLVGFP-SKVKFSPASLNIGNAPLFRF  297 (299)
Q Consensus       233 ~~~~----~~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~-~v~~g~~-~~~~~~~~~l~~~~~~~~g~  297 (299)
                      .+.+    ...+.  .+++|+++|++|+..+...+..+++++|. ++..|.. ....++...++.++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs  153 (175)
T d1cdoa2          81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGS  153 (175)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEEC
T ss_pred             CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEE
Confidence            6532    22222  37899999999998878888888887754 4555655 56666777777889999884

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.6e-20  Score=150.65  Aligned_cols=144  Identities=22%  Similarity=0.231  Sum_probs=112.2

Q ss_pred             CCcccccccchhhHHHHHHhhhccCCCCC--CEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCE
Q 022313          153 YPLALAAPLLCAGITVYTPMMRHKMNQPG--KSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~~~~~~~~g--~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      +|+...| ++.+..|||+++.....+++|  ++|||+|+ |++|++++|+|+..|+ +|+.++.++++..++.+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4455543 677899999999888877887  88999986 9999999999999999 56666778888887878899999


Q ss_pred             EEeCCCHHH---HHHh-cCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC----CceeeC-------hhhhhcCCee
Q 022313          229 FVVSSDLEQ---MKAL-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP----SKVKFS-------PASLNIGNAP  293 (299)
Q Consensus       229 v~~~~~~~~---~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~----~~~~~~-------~~~l~~~~~~  293 (299)
                      ++|+.+++.   +++. .+++|+|||++|+.. ++.++++++++|+++.+|..    ...+.+       ...+..|+++
T Consensus        81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~  159 (187)
T d1vj1a2          81 AVNYKTGNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNIT  159 (187)
T ss_dssp             EEETTSSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCE
T ss_pred             EeeccchhHHHHHHHHhccCceEEEecCCchh-HHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceE
Confidence            999987543   3333 368999999999876 99999999999999999975    111111       2346679999


Q ss_pred             eeeec
Q 022313          294 LFRFK  298 (299)
Q Consensus       294 ~~g~~  298 (299)
                      ++||.
T Consensus       160 ~~g~~  164 (187)
T d1vj1a2         160 RERFT  164 (187)
T ss_dssp             EEECC
T ss_pred             EEEeE
Confidence            99973

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=4e-19  Score=144.32  Aligned_cols=139  Identities=19%  Similarity=0.137  Sum_probs=116.7

Q ss_pred             ccccccchhhHHHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCC
Q 022313          156 ALAAPLLCAGITVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSD  234 (299)
Q Consensus       156 ~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~  234 (299)
                      ++.++++..+.|+|++++.. .+++|++|||+|+|++|++++++|+..|+ +|++++.++++++.+ +++|+++++++.+
T Consensus         2 ~d~~~l~d~~~ta~~a~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-~~~Ga~~~~~~~~   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQGFEIADLSLD   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCEEEETTSS
T ss_pred             chHHhcccHHHHHHHHHHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh-hhccccEEEeCCC
Confidence            46778899999999999865 45999999999999999999999999998 899999998888888 7999999998776


Q ss_pred             HHH---HHHh--cCCccEEEEcCCC---------------chhHHHHHHhcccCcEEEEEcCC--------------Cce
Q 022313          235 LEQ---MKAL--GKSLDFIIDTASG---------------DHPFDAYMSLLKVAGVYVLVGFP--------------SKV  280 (299)
Q Consensus       235 ~~~---~~~~--~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~--------------~~~  280 (299)
                      .+.   +.++  ..++|++||++|.               ..+++.++++++++|+++.+|..              ...
T Consensus        80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence            433   3344  3689999999994               34699999999999999999975              133


Q ss_pred             eeChhhhhcCCeeeee
Q 022313          281 KFSPASLNIGNAPLFR  296 (299)
Q Consensus       281 ~~~~~~l~~~~~~~~g  296 (299)
                      ++++..++.|++++.+
T Consensus       160 ~~~~~~~~~k~~~i~~  175 (195)
T d1kola2         160 SIRFGLGWAKSHSFHT  175 (195)
T ss_dssp             CCCHHHHHHTTCEEEE
T ss_pred             eeeHHHHHhhcceecc
Confidence            5666677888988875

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.54  E-value=5.5e-14  Score=107.85  Aligned_cols=134  Identities=14%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             cccceEEeeeCCC------CcccceeeecCCCCCCcEEEEEceeecccchhhhhccCCCCCCCCccccccccEEEEEecC
Q 022313            7 SKDCLGWAARDPS------GVLSPYSFNRRAVGSDDVSITITHCGVCYADVIWTRNKHGDSKYPLVPGHEIVGIVKEVGH   80 (299)
Q Consensus         7 ~~~~~~~~~~~~~------~~~~~~~~~~p~~~~~evlv~v~~~~i~~~D~~~~~g~~~~~~~p~~lG~e~~G~V~~vG~   80 (299)
                      |++.++|.+.+.|      ++|++++.+.|+++++|||||+++.++++.......    ..+...++..+.+|+|++  +
T Consensus         1 M~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~----~~~~g~~~~g~~vg~Vv~--S   74 (147)
T d1v3va1           1 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK----RLKEGAVMMGQQVARVVE--S   74 (147)
T ss_dssp             CCEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG----GSCTTSBCCCCEEEEEEE--E
T ss_pred             CcccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc----ccccCCccccceEEEEEE--e
Confidence            4566667665543      348899999999999999999999999765433221    122333456688999988  5


Q ss_pred             CCCCcccCCEEEEeccccCCCCCccccCCCCccccccccccccccCCCCccCCcceeeEEeecceEEEcCCCCCc-----
Q 022313           81 NVSRFKVGDHVGVGTYVNSCRDCEYCNDGLEVHCARSVYTFNAIDADGTITKGGYSSYIVVHERYCYKIANDYPL-----  155 (299)
Q Consensus        81 ~v~~~~~Gd~V~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~-----  155 (299)
                      +.++|++||+|..                                      .++|+||.+++++.+.++|++++.     
T Consensus        75 ~~~~f~~GD~V~g--------------------------------------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~  116 (147)
T d1v3va1          75 KNSAFPAGSIVLA--------------------------------------QSGWTTHFISDGKGLEKLLTEWPDKKIQY  116 (147)
T ss_dssp             SCTTSCTTCEEEE--------------------------------------CCCSBSEEEECSSSCEECCTTCCTTSSCC
T ss_pred             CCCcccCCCEEEE--------------------------------------ccCCEeEEEeccceeeEccccccccccch
Confidence            6788999999952                                      368999999999999999876543     


Q ss_pred             ccccccchhhHH-HHHHhhhccCCCCCCEEEE
Q 022313          156 ALAAPLLCAGIT-VYTPMMRHKMNQPGKSLGV  186 (299)
Q Consensus       156 ~~aa~~~~~~~t-a~~al~~~~~~~~g~~vlI  186 (299)
                      ...+++....+| ||..+...  -+.|++|++
T Consensus       117 ~~~~~lG~~Gmtaay~gl~~~--~k~Getvv~  146 (147)
T d1v3va1         117 HEHVTKGFENMPAAFIEMLNG--ANLGKAVVT  146 (147)
T ss_dssp             CEEEEECGGGHHHHHHHHHTT--CCSSEEEEE
T ss_pred             hhhHhccccchHHHHHHhhCC--CCCCCEEEe
Confidence            234455556666 45455333  378999987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=8.5e-13  Score=89.05  Aligned_cols=73  Identities=27%  Similarity=0.301  Sum_probs=64.1

Q ss_pred             CCcccccccchhhHHHHHHhh---hccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC
Q 022313          153 YPLALAAPLLCAGITVYTPMM---RHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA  226 (299)
Q Consensus       153 ~~~~~aa~~~~~~~ta~~al~---~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~  226 (299)
                      +|+++|+.++++..|||.++.   .....+++++|||+|+ |++|.+++|+++..|++|+++++++++.+.+ +++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~-~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HHCCC
Confidence            578999999999999998764   3444589999999987 9999999999999999999999999999888 67773

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.57  E-value=1.4e-07  Score=72.30  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=79.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC-----
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG-----  254 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~-----  254 (299)
                      +..+|+|+|+|..|+.|++.|+.+|+.|.+++.+.++++++...++........+.+.+.+.-...|+||.++--     
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a  110 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence            568899999999999999999999999999999999999996666643333344555666666789999997652     


Q ss_pred             -chhHHHHHHhcccCcEEEEEcCC
Q 022313          255 -DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 -~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       ....+..++.|++++.++++..-
T Consensus       111 P~lIt~~mv~~Mk~GSVIVDvaid  134 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIVDVAVD  134 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CeeecHHHHhhcCCCcEEEEeecC
Confidence             23578899999999999999655

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.39  E-value=1.2e-06  Score=67.94  Aligned_cols=97  Identities=22%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe----CCC-------------------HH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV----SSD-------------------LE  236 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~----~~~-------------------~~  236 (299)
                      +..+|+|+|+|..|+.|++.|+.+|++|.+++.+.++++++ ++++...+.-    ..+                   .+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l-~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH-HHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            55789999999999999999999999999999999999999 5776433210    000                   11


Q ss_pred             HHHHhcCCccEEEEcCCC------chhHHHHHHhcccCcEEEEEcCC
Q 022313          237 QMKALGKSLDFIIDTASG------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+.+.-...|+||-++--      ....+...+.|++++.++++..-
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaid  153 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVE  153 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeec
Confidence            122223679999986542      23578899999999999999654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.27  E-value=5.5e-06  Score=65.31  Aligned_cols=86  Identities=14%  Similarity=0.070  Sum_probs=67.9

Q ss_pred             HHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-----CCEEEeCCCHHHHHHhc
Q 022313          169 YTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-----ADKFVVSSDLEQMKALG  242 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-----~~~v~~~~~~~~~~~~~  242 (299)
                      +...+....--++++++|.|+ |++|...++.+...|++|++++|+.++.+++.+++.     .....+..+.+.+.+.-
T Consensus        11 ~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (191)
T d1luaa1          11 ALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV   90 (191)
T ss_dssp             HHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh
Confidence            333344444468999999997 999999999999999999999999998877765553     23445677777777777


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|++|++.|.
T Consensus        91 ~~iDilin~Ag~  102 (191)
T d1luaa1          91 KGAHFVFTAGAI  102 (191)
T ss_dssp             TTCSEEEECCCT
T ss_pred             cCcCeeeecCcc
Confidence            899999999874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.1e-05  Score=64.34  Aligned_cols=98  Identities=21%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE---EEeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK---FVVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.++++...   ..|..+.+.++++       -++.|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            5889999987 899999999999999999999999999998877777332   2344455444332       3689999


Q ss_pred             EEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          249 IDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      ++++|..                         ...+.+++.|+  .+|+++.++..
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~  138 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV  138 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence            9998832                         23555666663  46899999876

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.98  E-value=4.5e-05  Score=58.00  Aligned_cols=101  Identities=19%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             hhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEc
Q 022313          173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +.... -++++|||+|+|.+|...++.+...|+ +++++.|+.++.+.+.+++|.. ....++   +.+.-..+|+||.|
T Consensus        17 ~~~~~-l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~~---~~~~l~~~Divi~a   91 (159)
T d1gpja2          17 RELGS-LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRFDE---LVDHLARSDVVVSA   91 (159)
T ss_dssp             HHHSC-CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCGGG---HHHHHHTCSEEEEC
T ss_pred             HHhCC-cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccchh---HHHHhccCCEEEEe
Confidence            34444 688999999999999999999998998 7999999999988888888853 333332   22233679999999


Q ss_pred             CCCchh---HHHHHHhcc---cCc--EEEEEcCCC
Q 022313          252 ASGDHP---FDAYMSLLK---VAG--VYVLVGFPS  278 (299)
Q Consensus       252 ~g~~~~---~~~~~~~l~---~~G--~~v~~g~~~  278 (299)
                      ++.+..   ....-..++   .+.  .+++++.+.
T Consensus        92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          92 TAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             CSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             cCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            987531   222222322   222  678888773

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.98  E-value=1.8e-05  Score=60.80  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccE
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      ...++.... .++++|+|+|+|+.+.+++..++..|+ ++.++.|+.++.+.+.+.++...+-...        ...+|+
T Consensus         6 ~~~l~~~~~-~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--------~~~~Dl   76 (167)
T d1npya1           6 VKLIEKYHL-NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--------NQQADI   76 (167)
T ss_dssp             HHHHHHTTC-CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--------TCCCSE
T ss_pred             HHHHHHcCC-CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--------ccchhh
Confidence            345555554 678899999999999999999999997 8999999999998887777764432111        146899


Q ss_pred             EEEcCC
Q 022313          248 IIDTAS  253 (299)
Q Consensus       248 v~d~~g  253 (299)
                      +++|+.
T Consensus        77 iINaTp   82 (167)
T d1npya1          77 LVNVTS   82 (167)
T ss_dssp             EEECSS
T ss_pred             heeccc
Confidence            999876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.95  E-value=4.8e-05  Score=62.48  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=74.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE---eCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.++++...+.   |..+.+.++++       -++.|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            6889999987 89999999999999999999999999999888888854433   33344433332       2789999


Q ss_pred             EEcCCCc-------------------------hhHHHHHHhcc-cCcEEEEEcCC
Q 022313          249 IDTASGD-------------------------HPFDAYMSLLK-VAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~  277 (299)
                      ++++|..                         ...+.+++.|+ .+|+++.++..
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~  139 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASV  139 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccch
Confidence            9999842                         12455566665 57999999876

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.93  E-value=4.4e-05  Score=62.77  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++.+.+.++++....   .|-.+.+.++++       -+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            6899999998 8999999999999999999999999999988888874322   244455444332       2689999


Q ss_pred             EEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          249 IDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      ++++|..                         ...+.+++.++  .+|+++.++..
T Consensus        84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~  139 (254)
T d1hdca_          84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSA  139 (254)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccc
Confidence            9999831                         12444444433  36999999876

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.3e-05  Score=63.09  Aligned_cols=99  Identities=20%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHHh---cCCccEEEEcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKAL---GKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~---~~~~d~v~d~~  252 (299)
                      -+|+++||.|+ +++|.+.++.+...|++|+++++++++++.+.++++....  .|-.+.+.++++   -+++|+++++.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA   84 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence            37899999998 8999999999999999999999999999988888774332  355556555554   26899999998


Q ss_pred             CCc-------------------------hhHHHHHH-hcc--cCcEEEEEcCC
Q 022313          253 SGD-------------------------HPFDAYMS-LLK--VAGVYVLVGFP  277 (299)
Q Consensus       253 g~~-------------------------~~~~~~~~-~l~--~~G~~v~~g~~  277 (299)
                      |..                         ...+.+++ +++  .+|+++.++..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~  137 (244)
T d1pr9a_          85 AVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             ccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccc
Confidence            842                         12344454 343  35899998876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.83  E-value=5.4e-05  Score=61.71  Aligned_cols=75  Identities=19%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHh-------cCCccEEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKAL-------GKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-------~~~~d~v~d  250 (299)
                      +++++||.|+ +++|.+.++.+...|++|+++++++++.+++.++++...+. |-.+.+.++++       -+++|++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            5799999998 89999999999999999999999999999988888764432 44555544432       268999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        84 nAG~   87 (242)
T d1ulsa_          84 YAGI   87 (242)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9983

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=0.00013  Score=59.49  Aligned_cols=98  Identities=21%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHh-------cCCccEEE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      =+|+++||.|+ +++|.+.++.+...|++|++.+++++..+.. ++.+...+ .|-.+.+.++++       -++.|+++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA-EAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHH-HHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            36899999997 8999999999999999999999998876655 67675432 344455444332       27899999


Q ss_pred             EcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          250 DTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      +++|..                         ...+.+++.|+.  +|+++.++..
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~  136 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASV  136 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCG
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccc
Confidence            998831                         234555666654  5899998876

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.81  E-value=5.8e-05  Score=57.96  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=72.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      ++++|+|+|+|.+|..+++.+...|.+|++++|+.++.+.+.++++...+.  ...............|.++.+......
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            468999999999999999999999999999999999999987777643332  222233334444678888888877665


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ......+++.+..+++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~  100 (182)
T d1e5qa1          81 ATVIKSAIRQKKHVVTTSYV  100 (182)
T ss_dssp             HHHHHHHHHHTCEEECSSCC
T ss_pred             hHHHHHHHhhccceeecccC
Confidence            55566666666676666543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=2.8e-05  Score=59.84  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=68.6

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEEEeCCCHHHHHHhcCCc
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~  245 (299)
                      .++|+......++++|||+|+|+.+.+++..+...|++++++.|+.++.+.+.+.+..   ...+...+     .....+
T Consensus         6 ~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-----~~~~~~   80 (170)
T d1nyta1           6 LSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE-----LEGHEF   80 (170)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-----GTTCCC
T ss_pred             HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccc-----cccccc
Confidence            4456655554789999999999999999999999999999999999998888766652   12221111     112568


Q ss_pred             cEEEEcCCCchh---HHHHHHhcccCcEEEEE
Q 022313          246 DFIIDTASGDHP---FDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       246 d~v~d~~g~~~~---~~~~~~~l~~~G~~v~~  274 (299)
                      |++++|+.-...   ...-.+.++++..++++
T Consensus        81 dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~  112 (170)
T d1nyta1          81 DLIINATSSGISGDIPAIPSSLIHPGIYCYDM  112 (170)
T ss_dssp             SEEEECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred             ceeecccccCcccCCCCCcHHHhccCcEEEEe
Confidence            999998864220   01112346666666555

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=5.4e-05  Score=61.70  Aligned_cols=75  Identities=20%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE--EeCCCHHHHHHhc---CCccEEEEcCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF--VVSSDLEQMKALG---KSLDFIIDTAS  253 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~---~~~d~v~d~~g  253 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+.+.++++.-..  .|-.+.+.+++.-   +++|++++++|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg   83 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCc
Confidence            6899999998 8999999999999999999999999999888778763332  3455555555442   68999999988


Q ss_pred             C
Q 022313          254 G  254 (299)
Q Consensus       254 ~  254 (299)
                      .
T Consensus        84 ~   84 (242)
T d1cyda_          84 L   84 (242)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=0.00021  Score=58.34  Aligned_cols=98  Identities=24%  Similarity=0.229  Sum_probs=71.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----hcCCCEE---EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS----LLGADKF---VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~----~~g~~~v---~~~~~~~~~~~~-------~~~  244 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.++..+    +.|.+..   .|-.+++.++++       -++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5889999998 899999999999999999999999887765443    3454322   244455444332       268


Q ss_pred             ccEEEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      +|++++++|..                         ...+.+++.|+.  +|+++.++..
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            99999999841                         235556677744  5799999765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=2.6e-05  Score=62.45  Aligned_cols=102  Identities=22%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---CCCEEE-eCCCHHHHHHhcCC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---GADKFV-VSSDLEQMKALGKS  244 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g~~~v~-~~~~~~~~~~~~~~  244 (299)
                      .++... +++|++||-+|+|. |..++.+++..+  .+|+.++.+++..+.+.+.+   +.+.+. ...+........+.
T Consensus        67 ~l~~l~-l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWVG-LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHTT-CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhh-ccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            344444 59999999999976 888888988775  48999999988777664433   333222 11221111112367


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ||+|+...+-.......++.|+++|+++..
T Consensus       145 fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            999998777666567789999999999873

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.75  E-value=0.00025  Score=57.58  Aligned_cols=99  Identities=22%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE---eCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV---VSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~-------~~~~d~  247 (299)
                      =+|+++||.|+ +++|.+.++-+...|++|+++.++.++.++..++++.+...   |-.+.+.++++       .+++|+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            36899999998 89999999999999999999999999999888888854332   44455554432       278999


Q ss_pred             EEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++++..                         ...+..+..++.++.++.++..
T Consensus        83 LinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~  137 (241)
T d2a4ka1          83 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  137 (241)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             eccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence            99988732                         1245556778888887776655

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.74  E-value=0.00016  Score=59.52  Aligned_cols=98  Identities=19%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++++.+.+++   |.+..   .|-.+.+.++++       -+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999998 89999999999999999999999998877665444   43222   244454444332       2789


Q ss_pred             cEEEEcCCCc--------------------------hhHHHHHHhc--ccCcEEEEEcCC
Q 022313          246 DFIIDTASGD--------------------------HPFDAYMSLL--KVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~--------------------------~~~~~~~~~l--~~~G~~v~~g~~  277 (299)
                      |+++++.|..                          ...+.+++.+  +.+|+++.++..
T Consensus        84 DilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~  143 (260)
T d1zema1          84 DFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM  143 (260)
T ss_dssp             CEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             CeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeech
Confidence            9999998831                          1244445544  456899999876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.3e-05  Score=61.20  Aligned_cols=98  Identities=19%  Similarity=0.191  Sum_probs=73.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE--eCCCHHHHHHh-------cCCccEEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV--VSSDLEQMKAL-------GKSLDFII  249 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~-------~~~~d~v~  249 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+.+.++++....+  |-.+.+.++++       -++.|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899999998 89999999999999999999999999999887777643333  44455544433       26899999


Q ss_pred             EcCCCc--------------------------hhHHHHHHhccc-CcEEEEEcCC
Q 022313          250 DTASGD--------------------------HPFDAYMSLLKV-AGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~~  277 (299)
                      +++|..                          ...+.+++.|+. +|+++.++..
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~  139 (250)
T d1ydea1          85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL  139 (250)
T ss_dssp             ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred             ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence            999831                          124445555544 5899988766

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=6.9e-05  Score=61.15  Aligned_cols=99  Identities=19%  Similarity=0.085  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccE
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  247 (299)
                      =+|+++||.|+ +++|.+.++.+...|++|+++++++++.+.+.++++....   .|-.+.+.++++       .+++|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi   83 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   83 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence            36899999998 8999999999999999999999999999988888873322   244455444332       268999


Q ss_pred             EEEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          248 IIDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      +++++|..                         ...+.+++.++  .+|+++.++..
T Consensus        84 linnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~  140 (244)
T d1nffa_          84 LVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSI  140 (244)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             EEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccc
Confidence            99999842                         12334444443  35899999877

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.71  E-value=7.4e-05  Score=61.39  Aligned_cols=75  Identities=16%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++.+.+.+++|....   .|-.+++.++++       .+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            5789999988 8999999999999999999999999999988888885432   244455554433       2689999


Q ss_pred             EEcCCC
Q 022313          249 IDTASG  254 (299)
Q Consensus       249 ~d~~g~  254 (299)
                      +++.|.
T Consensus        84 VnnAg~   89 (256)
T d1k2wa_          84 VNNAAL   89 (256)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            999983

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.66  E-value=0.00022  Score=58.49  Aligned_cols=98  Identities=20%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh--------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL--------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~--------~~~  244 (299)
                      +|+++||.|+ +++|.+.++.+...|++|++.++++++.+++.+++   +... .  .|-.+.+.++++        ..+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999998 89999999999999999999999998887765554   3222 1  244444433322        346


Q ss_pred             ccEEEEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      .|+++++.|..                         ...+.+++.++  .+|+++.++..
T Consensus        87 idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~  146 (259)
T d2ae2a_          87 LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSV  146 (259)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCG
T ss_pred             ceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccc
Confidence            99999999831                         12344555553  46899999876

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=0.00015  Score=59.57  Aligned_cols=98  Identities=23%  Similarity=0.231  Sum_probs=68.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CCE---EEeCCCHHHHHHh--------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---ADK---FVVSSDLEQMKAL--------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~~---v~~~~~~~~~~~~--------~~~  244 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++++++.+++.   ...   ..|..+.+.++++        .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999988 899999999999999999999999988877655542   221   2244444433221        356


Q ss_pred             ccEEEEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      +|+++++.|..                         ...+.+++.|+  .+|+++.++..
T Consensus        87 idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~  146 (259)
T d1xq1a_          87 LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSI  146 (259)
T ss_dssp             CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--
T ss_pred             cccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccc
Confidence            99999999842                         12344555553  45899998876

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00024  Score=57.81  Aligned_cols=99  Identities=16%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE---EEeCCCHHHHHHh-------cCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK---FVVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  244 (299)
                      -.|+++||.|+ +++|...+..+...|++|+++++++++++++.+++   |...   ..|..+.+.+.++       .+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            46899999998 89999999999999999999999998887765443   4322   2244555444332       368


Q ss_pred             ccEEEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      .|+++++.|..                         ...+.+++.|+.  +|+++.++..
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~  144 (244)
T d1yb1a_          85 VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASA  144 (244)
T ss_dssp             CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecc
Confidence            99999999942                         124455555655  4789988877

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.64  E-value=7.6e-05  Score=62.05  Aligned_cols=74  Identities=27%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccEE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDFI  248 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  248 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++++++.++++....   .|..+.+.++++       -+++|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            6899999998 8999999999999999999999999999888778874322   244454444332       2689999


Q ss_pred             EEcCC
Q 022313          249 IDTAS  253 (299)
Q Consensus       249 ~d~~g  253 (299)
                      ++++|
T Consensus        84 vnnAG   88 (276)
T d1bdba_          84 IPNAG   88 (276)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99987

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00029  Score=57.69  Aligned_cols=75  Identities=21%  Similarity=0.239  Sum_probs=57.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---C-CCEE----EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---G-ADKF----VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g-~~~v----~~~~~~~~~~~~-------~~  243 (299)
                      +++++||.|+ +++|.+.++.+...|++|+++++++++.+++.+++   + ...+    .|-.+++.++++       -+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5789999998 89999999999999999999999998887765444   2 1222    245555544432       27


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|++++++|.
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            89999999984

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.62  E-value=4.5e-05  Score=60.98  Aligned_cols=102  Identities=19%  Similarity=0.179  Sum_probs=71.3

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCEEE-eCCCHHHHHHhcCCcc
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADKFV-VSSDLEQMKALGKSLD  246 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v~-~~~~~~~~~~~~~~~d  246 (299)
                      .++... ++++++||.+|+|. |+.++.+++..|.+|+.+...++-.+.+.   +++|.+.+. ...+...-.....+||
T Consensus        70 ml~~L~-l~~g~~VLeIGsGs-GY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          70 MLEIAN-LKPGMNILEVGTGS-GWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             HHHHHT-CCTTCCEEEECCTT-SHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhc-cCccceEEEecCCC-ChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcce
Confidence            344444 59999999999875 88888888888888999999876554443   456754432 2222111001237899


Q ss_pred             EEEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          247 FIIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       247 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      .|+-..+-.......+++|+++|+++..
T Consensus       148 ~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         148 VIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             eEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            9998777666567889999999999874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.61  E-value=0.0002  Score=58.48  Aligned_cols=98  Identities=15%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      .++++||.|+ +++|++.++.+...|++|+++++++++.+.+.+++   |....   .|-.+.+.+.++       .+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            5788999988 89999999999999999999999988877665443   43222   244455444332       3789


Q ss_pred             cEEEEcCCCc-------------------------hhHHHHHHhc--ccCcEEEEEcCC
Q 022313          246 DFIIDTASGD-------------------------HPFDAYMSLL--KVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~  277 (299)
                      |+++++.|..                         ...+.+++.+  +.+|+++.++..
T Consensus        89 Dilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~  147 (251)
T d2c07a1          89 DILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSI  147 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             eeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCH
Confidence            9999998842                         1244455555  345999999877

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.59  E-value=0.00018  Score=59.42  Aligned_cols=74  Identities=20%  Similarity=0.337  Sum_probs=58.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---CEEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---DKFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++.+++.++++.   ...+  |-.+.+.++++       -+++|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            6899999998 8999999999999999999999999998888777652   1222  44455444432       26899


Q ss_pred             EEEEcCC
Q 022313          247 FIIDTAS  253 (299)
Q Consensus       247 ~v~d~~g  253 (299)
                      ++++++|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9999988

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=9.6e-05  Score=61.29  Aligned_cols=98  Identities=24%  Similarity=0.335  Sum_probs=68.9

Q ss_pred             CCCEE-EEEcC-ChHHHHHHHH-HHHCCCeEEEEeCCchHHHHHHHhc---CC-CEE--EeCCCHHHHHHh-------cC
Q 022313          180 PGKSL-GVIGL-GGLGHMAVKF-GKAFGLNVTVLSTSTSKKEEALSLL---GA-DKF--VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~v-lI~G~-g~~G~~a~~~-a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~v--~~~~~~~~~~~~-------~~  243 (299)
                      +|++| ||.|+ +++|+..++. ++..|++|++++|++++.+.+.+++   +. -.+  .|-.+.+.++++       .+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            36777 55687 8999988765 5556899999999999887765554   32 222  245555544432       26


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++|++++++|-.                         ...+.++..|+++|+++.++..
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            899999999831                         1355567788899999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.59  E-value=0.00041  Score=50.59  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=61.6

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDH  256 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~  256 (299)
                      +|+|.|.|.+|...++.+...|..|++++.++++.+++.++++...+. +..+.+.+.+.. +.+|.++-++....
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence            589999999999999999999999999999999999886677754433 455677777775 78999999888864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.57  E-value=0.00075  Score=54.80  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCCCEE---EeCCCHHHHHHh-------cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEALSLLGADKF---VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++ .+...++.|....   .|-.+.+.++++       -+++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999998 899999999999999999999987643 3444467774332   244455444332       268999


Q ss_pred             EEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          248 IIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      +++++|..                         ...+.+++.|+.  +|+++.+++.
T Consensus        84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~  140 (247)
T d2ew8a1          84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTST  140 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccc
Confidence            99999842                         124445555543  5899998876

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00011  Score=59.14  Aligned_cols=96  Identities=19%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---CC-------CEEEeCCCHHHHHHhcCC
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---GA-------DKFVVSSDLEQMKALGKS  244 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g~-------~~v~~~~~~~~~~~~~~~  244 (299)
                      .+++|++||-+|+|. |+.++.+|+..+  .+|+.++..++-.+.+.+.+   +.       ..+...+..... .....
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~-~~~~~  150 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAP  150 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCC
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-chhhh
Confidence            469999999999975 788888888765  48999999988776664333   21       112211111100 11257


Q ss_pred             ccEEEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          245 LDFIIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      ||+|+.+..-.......++.|+++|+++..
T Consensus       151 fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         151 YDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            999998777666678899999999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00026  Score=57.93  Aligned_cols=98  Identities=15%  Similarity=0.137  Sum_probs=70.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-----CCE---EEeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-----ADK---FVVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-----~~~---v~~~~~~~~~~~~-------~~  243 (299)
                      .|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.+++.     ...   ..|-.+.+.++++       -+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5899999998 899999999999999999999999988877655542     111   2244455544432       26


Q ss_pred             CccEEEEcCCCc-----------------hhHHHHHHhccc-----CcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-----------------HPFDAYMSLLKV-----AGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-----------------~~~~~~~~~l~~-----~G~~v~~g~~  277 (299)
                      ++|++++++|..                 ...+.+++.|++     +|+++.++..
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~  137 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  137 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence            899999999942                 123444555543     4889999876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.51  E-value=0.00013  Score=58.58  Aligned_cols=100  Identities=17%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CCEEEeCCCHHHHHHhcCCccE
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---ADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      .++.. .++++++||-+|+|. |..++.+++. +.+|+.++.+++..+.+.+.+.   .-.++..+...... ..++||.
T Consensus        62 ml~~L-~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-~~~pfD~  137 (224)
T d1vbfa_          62 MLDEL-DLHKGQKVLEIGTGI-GYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDR  137 (224)
T ss_dssp             HHHHT-TCCTTCEEEEECCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEE
T ss_pred             HHHHh-hhcccceEEEecCCC-CHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCchhhcch-hhhhHHH
Confidence            34434 459999999999973 7777777775 5699999999888777754433   12233222211111 1367999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEE
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      |+-..+-.......+++|++||+++..
T Consensus       138 Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         138 VVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             HHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            997766666677889999999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.49  E-value=0.00072  Score=47.85  Aligned_cols=94  Identities=14%  Similarity=0.003  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH-HHHHHHhcCCCEEEeC-CCHHHHHHhcCCccEEEEcCCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK-KEEALSLLGADKFVVS-SDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~-~~~~~~~~g~~~v~~~-~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      -.+++|||+|+|.+|..-++.+...|++|++++..... ...+. +-+.-..+.. .+.+    .-.++++|+-+++...
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~~~~i~~~~~~~~~~----dl~~~~lv~~at~d~~   84 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWA-NEGMLTLVEGPFDET----LLDSCWLAIAATDDDT   84 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-TTTSCEEEESSCCGG----GGTTCSEEEECCSCHH
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHH-hcCCceeeccCCCHH----HhCCCcEEeecCCCHH
Confidence            46789999999999999999999999999998765443 33332 2232222221 1211    1267899999999988


Q ss_pred             hHHHHHHhcccCcEEEEEcCC
Q 022313          257 PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .-.......++.|..+.+...
T Consensus        85 ~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          85 VNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             HHHHHHHHHHHTTCEEEETTC
T ss_pred             HHHHHHHHHHHcCCEEEeCCC
Confidence            556777888889988877544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00053  Score=52.98  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=72.0

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH---HHhcC-----CCEEEeCCCHHHHHH
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA---LSLLG-----ADKFVVSSDLEQMKA  240 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~---~~~~g-----~~~v~~~~~~~~~~~  240 (299)
                      .+++....--++++|+|+|+|+.+.+++..+...|+ +++++.|++++.+.+   .++++     ...+.+..+.+.+.+
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE   86 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence            345544433577999999999999999999999998 899999987765443   22332     223445556555555


Q ss_pred             hcCCccEEEEcCCCch------hHHHHHHhcccCcEEEEEcCC
Q 022313          241 LGKSLDFIIDTASGDH------PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       241 ~~~~~d~v~d~~g~~~------~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....+|++++++.-..      .+..-...++++..++++-..
T Consensus        87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~  129 (182)
T d1vi2a1          87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYN  129 (182)
T ss_dssp             HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCS
T ss_pred             hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcC
Confidence            5578999999986321      011123567888888887443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.44  E-value=0.00019  Score=58.60  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--C-EEE--eCCCHHHHHHh-------cCCcc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--D-KFV--VSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~--~~~~~~~~~~~-------~~~~d  246 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++++.+.+.++++.  . ..+  |-.+.+.++++       -+++|
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   84 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence            5899999987 8999999999999999999999999988888777652  1 222  44454444332       27899


Q ss_pred             EEEEcCCCc-------------------------hhHHHHHHhccc---CcEEEEEcCC
Q 022313          247 FIIDTASGD-------------------------HPFDAYMSLLKV---AGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~-------------------------~~~~~~~~~l~~---~G~~v~~g~~  277 (299)
                      ++++++|..                         ...+.+++.|+.   +|+++.++..
T Consensus        85 iLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~  143 (251)
T d1zk4a1          85 TLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             EEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence            999999842                         124455555544   3588888766

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.43  E-value=0.00032  Score=53.94  Aligned_cols=91  Identities=21%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-------eCCC--HHHHHHhcCCccEEEEc
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-------VSSD--LEQMKALGKSLDFIIDT  251 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-------~~~~--~~~~~~~~~~~d~v~d~  251 (299)
                      ++++.|+|+|.+|++.+..+...|.+|.++++++++.+.+. +.+.....       ....  .....+.....|++|-+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            47899999999999999999999999999999998888874 43321110       0000  01233444789999999


Q ss_pred             CCCchhHHHHH----HhcccCcEEEE
Q 022313          252 ASGDHPFDAYM----SLLKVAGVYVL  273 (299)
Q Consensus       252 ~g~~~~~~~~~----~~l~~~G~~v~  273 (299)
                      +.... .+..+    +.+.++-.++.
T Consensus        80 v~~~~-~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          80 VPAIH-HASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             SCGGG-HHHHHHHHGGGCCTTCEEEE
T ss_pred             EchhH-HHHHHHHhhhccCCCCEEEE
Confidence            98765 44444    44555555443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00013  Score=59.51  Aligned_cols=75  Identities=20%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-EEeCCCHHHHHH---hcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-FVVSSDLEQMKA---LGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~---~~~~~d~v~d~~g~  254 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++++++.+..+... +.+....+..+.   ..++.|+++++.|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~   84 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF   84 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecccc
Confidence            6899999987 899999999999999999999999988888755555332 233333333333   24789999999884

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.41  E-value=0.00024  Score=54.50  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-CEEEeCCCHHHHHHhcCCccEE
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .+++......++++|+|+|+|+.+.+++..+...+.+++++.|+.++.+.+.+.++. ..+......   ......+|++
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~---~~~~~~~dii   83 (171)
T d1p77a1           7 TDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD---SIPLQTYDLV   83 (171)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---GCCCSCCSEE
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc---ccccccccee
Confidence            345544444688999999999999999998887777999999999998888777652 111111100   0112679999


Q ss_pred             EEcCCCchh---HHHHHHhcccCcEEEEEcC
Q 022313          249 IDTASGDHP---FDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       249 ~d~~g~~~~---~~~~~~~l~~~G~~v~~g~  276 (299)
                      ++|+.-...   .......++++..++++-.
T Consensus        84 IN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy  114 (171)
T d1p77a1          84 INATSAGLSGGTASVDAEILKLGSAFYDMQY  114 (171)
T ss_dssp             EECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             eecccccccccccchhhhhhcccceeeeeec
Confidence            999885320   1111234556666666644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.40  E-value=0.0003  Score=57.63  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh--------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL--------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~--------~~~  244 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.+++   +... .  .|-.+.+.++++        .+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            7899999997 89999999999999999999999988776654443   4322 2  244454443322        256


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      .|+++++.|.
T Consensus        85 idilinnag~   94 (258)
T d1ae1a_          85 LNILVNNAGV   94 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             cEEEeccccc
Confidence            9999999884

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.38  E-value=0.00094  Score=54.59  Aligned_cols=98  Identities=19%  Similarity=0.194  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHH----HhcCCCEEE---eCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEAL----SLLGADKFV---VSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~----~~~g~~~v~---~~~~~~~~~~~-------~~  243 (299)
                      +|+++||.|+ +++|++.++.+...|++|+++++++ ++.+.+.    ++.|.....   |-.+.+.++++       .+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            6889999987 8999999999999999999999875 3444432    233433332   44455444332       27


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      +.|++++++|..                         ...+.+++.|+.  +|+++.++..
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~  143 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASA  143 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccc
Confidence            899999999832                         124455556554  5899998776

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00037  Score=57.01  Aligned_cols=75  Identities=21%  Similarity=0.326  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEE---EeCCCHHHHHHh-------cCCc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKF---VVSSDLEQMKAL-------GKSL  245 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~-------~~~~  245 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.++   .|....   .|-.+++.++++       -+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            7899999988 8999999999999999999999998887766444   343322   234444444332       2689


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus        90 DilvnnAG~   98 (255)
T d1fmca_          90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEeeeCCcC
Confidence            999999884

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.35  E-value=0.00029  Score=58.22  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC--C----EEEeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA--D----KFVVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~--~----~v~~~~~~~~~~~~-------~  242 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++++++.+++   +.  .    ...|-.+.+.++++       -
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6789999988 89999999999999999999999998877765443   21  1    12244455544432       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      +++|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (272)
T d1xkqa_          84 GKIDVLVNNAGA   95 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeCCcc
Confidence            689999999874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.34  E-value=0.00056  Score=55.98  Aligned_cols=98  Identities=17%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----C-CCEE---EeCCCHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----G-ADKF---VVSSDLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g-~~~v---~~~~~~~~~~~~-------~~  243 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+...+++    + ...+   .|-.+++.++++       -+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            5789999998 89999999999999999999999988876654333    2 2221   244555554433       27


Q ss_pred             CccEEEEcCCCc--------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD--------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      ++|++++++|-.                          ...+.++..++  .+|+++.++..
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~  144 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASV  144 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccH
Confidence            899999998821                          12334445544  56899999876

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.00078  Score=56.44  Aligned_cols=98  Identities=19%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC---------chHHHHHHHhc---CCCEEEeCCCHHHH----HHh-
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS---------TSKKEEALSLL---GADKFVVSSDLEQM----KAL-  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~---------~~~~~~~~~~~---g~~~v~~~~~~~~~----~~~-  241 (299)
                      +|+++||.|+ +++|.+.++.+...|++|++.+++         ++..+...+++   +.....+..+.+..    ++. 
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            6889999998 899999999999999999998654         33344433333   34444455543322    221 


Q ss_pred             --cCCccEEEEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          242 --GKSLDFIIDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       242 --~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                        .+++|++++++|..                         ...+.++..|+  .+|++|.++..
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~  150 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA  150 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCCh
Confidence              37899999999831                         23555666664  35899999876

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00021  Score=56.25  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      .++|+|+|+ |.+|...+..+...|.+|++++|+.++.... ..-+.+.+. +..+.+.+.+.-.+.|+||.++|...  
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~   81 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDL   81 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-cccccccccccccchhhHHHHhcCCCEEEEEeccCCch
Confidence            478999998 9999999998888999999999998776543 223343332 55566666666678999999998531  


Q ss_pred             --------hHHHHHHhcccCc--EEEEEcCC
Q 022313          257 --------PFDAYMSLLKVAG--VYVLVGFP  277 (299)
Q Consensus       257 --------~~~~~~~~l~~~G--~~v~~g~~  277 (299)
                              ....+++.++..|  +++.++..
T Consensus        82 ~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~  112 (205)
T d1hdoa_          82 SPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             hhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence                    1334455555554  77777543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.31  E-value=0.00015  Score=58.14  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             Hhhhc-cCCCCCCEEEEEcCChHHHHHHHHHH---HCC----CeEEEEeCCchHHHHHHHhc--------CCC--EEEeC
Q 022313          171 PMMRH-KMNQPGKSLGVIGLGGLGHMAVKFGK---AFG----LNVTVLSTSTSKKEEALSLL--------GAD--KFVVS  232 (299)
Q Consensus       171 al~~~-~~~~~g~~vlI~G~g~~G~~a~~~a~---~~g----~~v~~~~~~~~~~~~~~~~~--------g~~--~v~~~  232 (299)
                      .++.. ..++++++||.+|+|. |+.++.+++   ..|    .+|+.++..++-.+.+.+.+        +..  .++..
T Consensus        70 ~l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          70 ALEYLRDHLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            34433 2469999999999853 555555554   444    38999999887666553322        111  22222


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEE-EcC
Q 022313          233 SDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVL-VGF  276 (299)
Q Consensus       233 ~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~-~g~  276 (299)
                      +-.+... ...+||.|+-..+-.......++.|+++|+++. +|.
T Consensus       149 d~~~~~~-~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         149 DGRKGYP-PNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             CGGGCCG-GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESC
T ss_pred             ccccccc-cccceeeEEEEeechhchHHHHHhcCCCcEEEEEEec
Confidence            2111111 136899999877766667788999999999987 453

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.31  E-value=0.00076  Score=56.09  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cCCCE-EE--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LGADK-FV--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g~~~-v~--~~~~~~~~~~~-------~~  243 (299)
                      =+|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.++    .|... .+  |..+.+.++..       .+
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            36799999997 8999999999999999999999998876655443    34332 22  34444444332       37


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ++|+++++.|.
T Consensus       103 ~iDilvnnAg~  113 (294)
T d1w6ua_         103 HPNIVINNAAG  113 (294)
T ss_dssp             SCSEEEECCCC
T ss_pred             ccchhhhhhhh
Confidence            89999999984

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.31  E-value=0.00056  Score=56.02  Aligned_cols=75  Identities=21%  Similarity=0.172  Sum_probs=55.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----hcCCCEE---EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS----LLGADKF---VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~----~~g~~~v---~~~~~~~~~~~~-------~~~  244 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++.+++.+    +.|....   .|-.+.+.++++       -++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999998 899999999999999999999999887665433    3453322   244455444332       368


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++++.|.
T Consensus        88 iDilVnnAg~   97 (260)
T d1h5qa_          88 ISGLIANAGV   97 (260)
T ss_dssp             EEEEEECCCC
T ss_pred             CcEecccccc
Confidence            9999999883

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00039  Score=58.20  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc--------CCCEE---EeCCCHHHHHHh-----
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL--------GADKF---VVSSDLEQMKAL-----  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~--------g~~~v---~~~~~~~~~~~~-----  241 (299)
                      =+|+++||.|+ +++|.+.++.+...|++|++++++.++.+.+.+++        +...+   .|-.+.+.++++     
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            47899999998 89999999999999999999999988877665443        22221   244455444332     


Q ss_pred             --cCCccEEEEcCCC
Q 022313          242 --GKSLDFIIDTASG  254 (299)
Q Consensus       242 --~~~~d~v~d~~g~  254 (299)
                        .++.|+++++.|.
T Consensus        90 ~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          90 DTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeEEEEeeccc
Confidence              2689999999884

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.28  E-value=0.0021  Score=52.71  Aligned_cols=99  Identities=20%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHH---HhcCCCEEE---eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEAL---SLLGADKFV---VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~---~~~g~~~v~---~~~~~~~~~~~-------~~  243 (299)
                      -+|+++||.|+ +++|.+.++.+...|++|++++++.+ ..+.+.   ++.+.+...   |..+++.+.+.       .+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            35799999997 89999999999999999999987744 333332   345543322   44444443332       26


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.|+++.+.+..                         ...+.++..|..+|+++.++..
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~  154 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  154 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence            899999998842                         2356677888899999888655

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.27  E-value=0.00034  Score=57.54  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC--C--EE--EeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA--D--KF--VVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~--~--~v--~~~~~~~~~~~~-------~  242 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++++++.+++   +.  .  ..  .|..+.+.++++       -
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6889999988 89999999999999999999999998887765443   21  1  11  244455544432       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      ++.|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            789999999873

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00047  Score=47.04  Aligned_cols=71  Identities=24%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch--HHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS--KKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      ++++|+|+|.|..|+.+++++...|++|++.+..+.  ..+++  +-+....+...+...+    ..+|.++-..|-+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~d~vi~SPGi~~   76 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL--PEAVERHTGSLNDEWL----MAADLIVASPGIAL   76 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGS--CTTSCEEESBCCHHHH----HHCSEEEECTTSCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHH--hhccceeecccchhhh----ccCCEEEECCCCCC
Confidence            678899999999999999999999999999998644  22222  1233344444443333    35789998887655

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.26  E-value=0.0015  Score=53.35  Aligned_cols=99  Identities=22%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc-hHHHHHH---HhcCCCEE-E--eCCCHHHHHHh-------cC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST-SKKEEAL---SLLGADKF-V--VSSDLEQMKAL-------GK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~-~~~~~~~---~~~g~~~v-~--~~~~~~~~~~~-------~~  243 (299)
                      -.|+++||.|+ +++|.+.++.+...|++|++..+.+ +..+.+.   ++.|.+.+ +  |..+.+.++..       .+
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            36899999988 8999999999999999999876544 3334332   34564332 2  44444443332       26


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.|+++++.|..                         ...+.++..|+.+|.++.+...
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~  142 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  142 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence            899999999942                         2466777888888988887654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.26  E-value=0.0002  Score=55.50  Aligned_cols=96  Identities=15%  Similarity=0.030  Sum_probs=65.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE-----------------EEeCCCHHHHHH
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK-----------------FVVSSDLEQMKA  240 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~-----------------v~~~~~~~~~~~  240 (299)
                      +.++.+||.+|+|. |..+..+|++ |++|++++.+++-++.+.++.+...                 ++..+-.+....
T Consensus        18 ~~~~~rvLd~GCG~-G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGK-SQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCC-SHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcC-CHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            48999999999974 7788888875 9999999999999998866554211                 111110011111


Q ss_pred             hcCCccEEEEcCCC--------chhHHHHHHhcccCcEEEEEc
Q 022313          241 LGKSLDFIIDTASG--------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       241 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ....+|+|++...-        ...++.+.+.|+++|+++...
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            22568999885442        124677889999999977653

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.25  E-value=0.00056  Score=55.90  Aligned_cols=74  Identities=19%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEE---EeCCCHHHHHHh-------cCCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKF---VVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~-------~~~~d  246 (299)
                      |+..||.|+ +++|++.++.+...|++|+++++++++.++..++   .|....   .|-.+.+.++++       -++.|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            677899988 8999999999999999999999998887766544   343322   244455444332       36899


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      ++++++|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999984

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.25  E-value=0.00051  Score=50.06  Aligned_cols=92  Identities=16%  Similarity=0.232  Sum_probs=65.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCchhHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDHPFD  259 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~  259 (299)
                      ++++|+|.|.+|...++.+...|..|++++.++++.+++ ++.+...++ +..+++.+.+.. ..+|.++-+++......
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~-~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHT-TTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHH-HHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            357889999999999999999999999999999999988 466654433 444456666654 67899998888653222


Q ss_pred             ---HHHHhcccCcEEEEE
Q 022313          260 ---AYMSLLKVAGVYVLV  274 (299)
Q Consensus       260 ---~~~~~l~~~G~~v~~  274 (299)
                         .......+..+++..
T Consensus        80 ~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          80 TLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHcCCCcEEee
Confidence               222334444565544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.24  E-value=0.00036  Score=57.67  Aligned_cols=74  Identities=22%  Similarity=0.335  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC--CE----EEeCCCHHHHHHh-------c
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA--DK----FVVSSDLEQMKAL-------G  242 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~----v~~~~~~~~~~~~-------~  242 (299)
                      +|+++||.|+ +++|.+.++.+...|++|+++++++++++.+.+++   +.  ..    ..|-.+.+.++++       -
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5889999988 89999999999999999999999988877665443   32  11    2244455544332       2


Q ss_pred             CCccEEEEcCC
Q 022313          243 KSLDFIIDTAS  253 (299)
Q Consensus       243 ~~~d~v~d~~g  253 (299)
                      +++|++++++|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            68999999987

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00011  Score=59.42  Aligned_cols=92  Identities=24%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCC--CHHHHH-------H-h-cCCccE
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSS--DLEQMK-------A-L-GKSLDF  247 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~-------~-~-~~~~d~  247 (299)
                      +|++|||.|+ +++|.+.++.+...|++|+++++.+.+...      ........  +.+..+       + . ..++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS------ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS------EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------ccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4799999998 899999999999999999999876543221      11111111  111111       1 1 246999


Q ss_pred             EEEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++++|.-                          ...+.+++.++++|+++.++..
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~  130 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  130 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccH
Confidence            99998831                          1244566788999999999877

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.0011  Score=53.91  Aligned_cols=98  Identities=22%  Similarity=0.245  Sum_probs=67.2

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHhcCCCEEE--eCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSKKEEA---LSLLGADKFV--VSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v~--~~~~~~~~~~~-------~~~  244 (299)
                      +|+++||.|+ |  ++|.+.++.+...|++|++..++++..+.+   .+..+....+  +..+.+.++++       -++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            6899999997 5  799999999999999999999887654443   2333433333  34444444332       278


Q ss_pred             ccEEEEcCCCc-----------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-----------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .|+++++.+..                             ...+.+...++++|+++.++..
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~  148 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYY  148 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECG
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeeh
Confidence            99999998741                             0122344567788999988766

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00061  Score=54.84  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCC-CHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSS-DLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~-~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      +++++||.|+ +++|.+.++.+...|++|++++++++.++    +.+...+. +.. +.+.+.+.-+++|++++++|.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~----~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----hcCCcEEEcchHHHHHHHHHHhCCCcEEEecccc
Confidence            5799999998 89999999999999999999999876554    44543332 222 223333334789999999884

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.08  E-value=0.0019  Score=52.50  Aligned_cols=73  Identities=23%  Similarity=0.216  Sum_probs=53.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCCEE---EeCCCHHHHHHh-------cCCccE
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GADKF---VVSSDLEQMKAL-------GKSLDF  247 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~d~  247 (299)
                      +.+||.|+ +++|++.++.+...|++|+++++++++.+.+.+++   |.+..   .|-.+.+.++++       -+++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            34688888 89999999999999999999999998877665443   43322   244555544432       268999


Q ss_pred             EEEcCCC
Q 022313          248 IIDTASG  254 (299)
Q Consensus       248 v~d~~g~  254 (299)
                      +++++|.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999883

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.04  E-value=0.003  Score=47.58  Aligned_cols=88  Identities=18%  Similarity=0.124  Sum_probs=61.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-CCEEEeCCCHHHHHHhcCCccEEEEcCCCch---hH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-ADKFVVSSDLEQMKALGKSLDFIIDTASGDH---PF  258 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~  258 (299)
                      +|.|+|.|.+|...+..++..|.+|++++++++..+.+ ++.+ .+...+..      +.....|+||-++....   .+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a-~~~~~~~~~~~~~------~~~~~~DiIilavp~~~~~~vl   74 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAGQDL------SLLQTAKIIFLCTPIQLILPTL   74 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEESCG------GGGTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH-HHhhccceeeeec------ccccccccccccCcHhhhhhhh
Confidence            58899999999998888889999999999999888887 4666 44443221      12367888888876443   23


Q ss_pred             HHHHHhcccCcEEEEEcCC
Q 022313          259 DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~  277 (299)
                      +...+.++++..++.++..
T Consensus        75 ~~l~~~l~~~~iv~~~~s~   93 (165)
T d2f1ka2          75 EKLIPHLSPTAIVTDVASV   93 (165)
T ss_dssp             HHHGGGSCTTCEEEECCSC
T ss_pred             hhhhhhcccccceeecccc
Confidence            4444455566666666533

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0047  Score=46.29  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             HHHHhhh-ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCcc
Q 022313          168 VYTPMMR-HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       168 a~~al~~-~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  246 (299)
                      .+.++.+ ...+-.|+++.|+|-|-+|...++.++.+|++|++++.++.+.-++ .--|. ++.      .+.+.....|
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A-~~dG~-~v~------~~~~a~~~ad   81 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA-AMEGY-EVT------TMDEACQEGN   81 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTC-EEC------CHHHHTTTCS
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh-hcCce-Eee------ehhhhhhhcc
Confidence            3444433 4455799999999999999999999999999999999987665554 22233 222      2345557789


Q ss_pred             EEEEcCCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +++-++|+.. .-..-++.|+++..+.-+|..
T Consensus        82 ivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          82 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             EEEECSSCSCSBCHHHHTTCCTTEEEEECSSS
T ss_pred             EEEecCCCccchhHHHHHhccCCeEEEEeccc
Confidence            9999999865 456688999999888888866

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.03  E-value=0.00079  Score=50.36  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYM  262 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  262 (299)
                      +|.++|+|.+|.+.+.-....+.++++..++.++.+++.+++|....   .+   ..+.....|+||-++-... +..++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~---~~---~~~~~~~~dvIilavkp~~-~~~vl   74 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYA---MS---HQDLIDQVDLVILGIKPQL-FETVL   74 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBC---SS---HHHHHHTCSEEEECSCGGG-HHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeee---ch---hhhhhhccceeeeecchHh-HHHHh
Confidence            47889999999988887777788999999999998888778885432   12   2233357899999997655 88888


Q ss_pred             HhcccCcEEEEEcC
Q 022313          263 SLLKVAGVYVLVGF  276 (299)
Q Consensus       263 ~~l~~~G~~v~~g~  276 (299)
                      +.++++..++.+..
T Consensus        75 ~~l~~~~~iis~~a   88 (152)
T d2ahra2          75 KPLHFKQPIISMAA   88 (152)
T ss_dssp             TTSCCCSCEEECCT
T ss_pred             hhcccceeEecccc
Confidence            88888877776543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.01  E-value=0.00016  Score=58.45  Aligned_cols=91  Identities=25%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCC--HHH-------HHH-h-cCCccEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSD--LEQ-------MKA-L-GKSLDFI  248 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~-------~~~-~-~~~~d~v  248 (299)
                      +.+|||.|+ +++|.+.++.+...|++|+++++++++...      ....+..+.  .+.       ... . .+++|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc------ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            457899998 899999999999999999999998654221      111111111  111       111 1 2679999


Q ss_pred             EEcCCCc--------------------------hhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGD--------------------------HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++++|..                          ...+.+++.|+++|+++.++..
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~  130 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  130 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccH
Confidence            9998831                          1245566788899999999876

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.01  E-value=0.0024  Score=51.57  Aligned_cols=96  Identities=19%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe-CCchHHHHHHH---hcCCCE---EEeCCCHHHHHHh-------cCCcc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS-TSTSKKEEALS---LLGADK---FVVSSDLEQMKAL-------GKSLD  246 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~-~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~d  246 (299)
                      ..+||.|+ +++|++.++.+...|++|++.+ ++++..+.+.+   +.|...   ..|-.+.+.++++       .+++|
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            35777887 8999999999999999998875 45555554433   345322   2244455444332       37899


Q ss_pred             EEEEcCCCc-------------------------hhHHHHHHhc--ccCcEEEEEcCC
Q 022313          247 FIIDTASGD-------------------------HPFDAYMSLL--KVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~  277 (299)
                      ++++++|..                         ...+.+++.|  +.+|+++.++..
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~  139 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASV  139 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcCh
Confidence            999999842                         2355566666  457999999877

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.00  E-value=0.0017  Score=53.01  Aligned_cols=75  Identities=21%  Similarity=0.163  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-HHHHHH---HhcCCCEE---EeCCCHHHHHHh-------cCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-KKEEAL---SLLGADKF---VVSSDLEQMKAL-------GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-~~~~~~---~~~g~~~v---~~~~~~~~~~~~-------~~~  244 (299)
                      +|+++||.|+ +++|.+.++.+...|++|++++++.+ ..+.+.   ++.|.+..   .|-.+.+.++++       .++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6789999987 89999999999999999999998865 333332   34554322   244455444332       268


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|++++++|.
T Consensus        86 iDiLVnnAG~   95 (261)
T d1geea_          86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeecccee
Confidence            9999999984

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.95  E-value=0.0011  Score=53.85  Aligned_cols=99  Identities=17%  Similarity=0.151  Sum_probs=68.1

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhc---C-CCE--EEeCCCHHHHHHhcCCccE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLL---G-ADK--FVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~---g-~~~--v~~~~~~~~~~~~~~~~d~  247 (299)
                      ..++||++||=.|+|+ |.++..+|+..+  .+|+.++.+++..+.+++.+   + ...  +...+-.+..  ....||.
T Consensus        81 l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~--~~~~fD~  157 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI--SDQMYDA  157 (250)
T ss_dssp             CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC--CSCCEEE
T ss_pred             cCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc--ccceeee
Confidence            3359999999999865 667777777654  48999999998888775543   2 222  2222111110  1257999


Q ss_pred             EEEcCCCc-hhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGD-HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+.....+ ..+..+.+.|+|+|+++.+...
T Consensus       158 V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         158 VIADIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             EEECCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             eeecCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence            98666554 3688999999999999987544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.92  E-value=0.0024  Score=47.53  Aligned_cols=82  Identities=18%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             EEEEEcCChHHHHHHHH-HHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH
Q 022313          183 SLGVIGLGGLGHMAVKF-GKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY  261 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~-a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  261 (299)
                      +|.++|+|.+|.+.++- ++..+.++++.++++++.+.+.+++|....-+..      ++ ...|+||-++-... +...
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~------~v-~~~Div~lavkP~~-~~~v   73 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP------EL-HSDDVLILAVKPQD-MEAA   73 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC------CC-CTTSEEEECSCHHH-HHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccc------cc-cccceEEEecCHHH-HHHh
Confidence            57889999999988774 4443479999999999999987778764332211      12 44789888887544 7777


Q ss_pred             HHhcccCcEEE
Q 022313          262 MSLLKVAGVYV  272 (299)
Q Consensus       262 ~~~l~~~G~~v  272 (299)
                      ++-+++.++++
T Consensus        74 ~~~l~~~~~~v   84 (152)
T d1yqga2          74 CKNIRTNGALV   84 (152)
T ss_dssp             HTTCCCTTCEE
T ss_pred             HHHHhhcccEE
Confidence            77777666544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0011  Score=53.09  Aligned_cols=97  Identities=18%  Similarity=0.050  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE----------------------eCCCH
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV----------------------VSSDL  235 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~----------------------~~~~~  235 (299)
                      +.++.+||..|+|. |..+..+|+ .|++|+.++.+++.++.+.++.+.....                      ..+-.
T Consensus        43 ~~~~~rvLd~GCG~-G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGK-AVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            47889999999975 777778876 5999999999999998886665532211                      11100


Q ss_pred             HHHHHhcCCccEEEEcCCC--------chhHHHHHHhcccCcEEEEEcC
Q 022313          236 EQMKALGKSLDFIIDTASG--------DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       236 ~~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      +........+|+|+++..-        ...+..+.++|+|+|+++....
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence            1111123678999986542        1246778999999999876643

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.002  Score=52.75  Aligned_cols=99  Identities=23%  Similarity=0.241  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCEE-E--eCCCHHHHHH-------hcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADKF-V--VSSDLEQMKA-------LGK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~v-~--~~~~~~~~~~-------~~~  243 (299)
                      =+|+++||.|+ +++|++.++.+...|++|++++|++++++++.++.    +.... +  +..+.+....       ..+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            36899999998 89999999999999999999999999888765442    32221 1  2223322221       237


Q ss_pred             CccEEEEcCCCc-------------------------hhHHHHHHhcc-cCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-------------------------HPFDAYMSLLK-VAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~  277 (299)
                      ..|+++++.|..                         ...+.++..|+ .+|+++.++..
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~  151 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSL  151 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccc
Confidence            889999887732                         12334444444 47899888766

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.88  E-value=0.0079  Score=44.88  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=77.2

Q ss_pred             HHhhh-ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEE
Q 022313          170 TPMMR-HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       170 ~al~~-~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .++.+ ...+-.|++++|.|=|-+|.-.++-++.+|++|+++..++-+.-++  .+---++.      .+.+..+..|++
T Consensus        11 d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA--~mdGf~v~------~~~~a~~~aDi~   82 (163)
T d1v8ba1          11 DGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA--VMEGFNVV------TLDEIVDKGDFF   82 (163)
T ss_dssp             HHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH--HTTTCEEC------CHHHHTTTCSEE
T ss_pred             HHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH--HhcCCccC------chhHccccCcEE
Confidence            34433 3455799999999999999999999999999999999988554444  23222332      344566889999


Q ss_pred             EEcCCCchh-HHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDHP-FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +-++|+... -..-++.|+++..+.-.|.+
T Consensus        83 vTaTGn~~vI~~~h~~~MKdgaIl~N~GHf  112 (163)
T d1v8ba1          83 ITCTGNVDVIKLEHLLKMKNNAVVGNIGHF  112 (163)
T ss_dssp             EECCSSSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             EEcCCCCccccHHHHHHhhCCeEEEecccc
Confidence            999999763 56678999999998888877

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.86  E-value=0.0012  Score=53.53  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCCC-EEE--eCCCHHHHHHh--------c-CCc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGAD-KFV--VSSDLEQMKAL--------G-KSL  245 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~~-~v~--~~~~~~~~~~~--------~-~~~  245 (299)
                      .++|||.|+ +++|++.++.+...|+  +|+.+.|+.++.+++.+..+.. +++  |..+.+.++++        . .+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            478999998 8999999988888886  7888999999988885444432 222  44444443332        1 358


Q ss_pred             cEEEEcCCC
Q 022313          246 DFIIDTASG  254 (299)
Q Consensus       246 d~v~d~~g~  254 (299)
                      |++++++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999983

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.84  E-value=0.0041  Score=49.97  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCe-------EEEEeCCchHHHHHHHhc---CCCE-E--EeCCCHHHHHHh-------
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLN-------VTVLSTSTSKKEEALSLL---GADK-F--VVSSDLEQMKAL-------  241 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~-------v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------  241 (299)
                      .|||.|+ +++|++.++.+...|++       |+.+++++++++.+.+++   |... .  .|-.+.+.++++       
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4678888 89999999988888987       899999988877765443   4322 1  244555444332       


Q ss_pred             cCCccEEEEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          242 GKSLDFIIDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       242 ~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      -+++|+++++.|..                         ...+.+++.|+  .+|+++.++..
T Consensus        83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~  145 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSV  145 (240)
T ss_dssp             TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEech
Confidence            36899999999832                         23455666664  36899998766

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0027  Score=51.16  Aligned_cols=49  Identities=22%  Similarity=0.220  Sum_probs=44.0

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGAD  227 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~  227 (299)
                      -+|+++||.|+ +++|.+.++.+...|++|+++++++++.+.+.++++..
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            37899999998 89999999999999999999999999998887888743

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.0006  Score=55.05  Aligned_cols=70  Identities=17%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-------cCCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-------GKSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~v~d~  251 (299)
                      +|+++||.|+ +++|.+.++.+...|++|++++++++..+.+     .....|..+.+.++++       .+++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-----EEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc-----eEEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            6899999988 8999999999999999999999987655432     1122355555544332       2689999999


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      +|.
T Consensus        81 AG~   83 (237)
T d1uzma1          81 AGL   83 (237)
T ss_dssp             CSC
T ss_pred             ecc
Confidence            883

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.0027  Score=51.86  Aligned_cols=101  Identities=23%  Similarity=0.244  Sum_probs=69.0

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhcC------CCEE-EeCCCHHHHHHhcCCcc
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLLG------ADKF-VVSSDLEQMKALGKSLD  246 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~g------~~~v-~~~~~~~~~~~~~~~~d  246 (299)
                      ..++||++||=.|+|+ |.++..+|+..|  .+|+.++.+++..+.+++.+-      .+.+ +...+.....-....||
T Consensus        92 l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD  170 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD  170 (264)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred             hCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence            3449999999999865 777888888765  499999999988887754321      1221 12222111111136799


Q ss_pred             EEEEcCCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          247 FIIDTASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       247 ~v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .||.....+. .+..+.+.|+++|+++.+-..
T Consensus       171 aV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         171 RAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             EEEEESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             eEEEecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence            8877666644 688899999999999887544

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.76  E-value=0.0028  Score=51.36  Aligned_cols=96  Identities=15%  Similarity=0.053  Sum_probs=65.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCEEEeCCCHHH-HHHh---cCCccEEEEcCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADKFVVSSDLEQ-MKAL---GKSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v~~~~~~~~-~~~~---~~~~d~v~d~~g  253 (299)
                      .+.||.|+ +++|++.++.+...|++|++.+++.++.+++.   +.+....+.+..+.+. +++.   -++.|+++++.|
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg   80 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   80 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            36889988 89999999999999999999999887776652   2233444555555433 2222   278999998876


Q ss_pred             Cc--------------------------hhHHHHHHhccc--CcEEEEEcCC
Q 022313          254 GD--------------------------HPFDAYMSLLKV--AGVYVLVGFP  277 (299)
Q Consensus       254 ~~--------------------------~~~~~~~~~l~~--~G~~v~~g~~  277 (299)
                      ..                          ...+.+++.|+.  +|+++.++..
T Consensus        81 ~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~  132 (252)
T d1zmta1          81 FAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSA  132 (252)
T ss_dssp             CCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccc
Confidence            31                          123344555533  5899999877

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.0011  Score=54.87  Aligned_cols=96  Identities=22%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cC-CCEE-EeCCCHHHHHHhcCCccEE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LG-ADKF-VVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g-~~~v-~~~~~~~~~~~~~~~~d~v  248 (299)
                      ....+++|++||=+|+|- |..++.+|+..|++|+.++.+++..+.+.+.   .| .+.+ +...+   ..++.+.||.|
T Consensus        56 ~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d---~~~~~~~fD~i  131 (285)
T d1kpga_          56 GKLGLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG---WEQFDEPVDRI  131 (285)
T ss_dssp             TTTTCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC---GGGCCCCCSEE
T ss_pred             HHcCCCCCCEEEEecCcc-hHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh---hhcccccccce
Confidence            344569999999999973 6778888998999999999999887766433   33 1211 11111   12344778887


Q ss_pred             EE-----cCCCc---hhHHHHHHhcccCcEEEE
Q 022313          249 ID-----TASGD---HPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       249 ~d-----~~g~~---~~~~~~~~~l~~~G~~v~  273 (299)
                      +.     .++..   ..++.+.+.|+|+|+++.
T Consensus       132 ~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         132 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             eeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence            54     44432   357778899999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.0068  Score=49.09  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCC-CEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGA-DKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~-~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      .++|++||=+|+|. |..++.+++ .|++|+.++.+++..+.+++   ..+. ..++..+..+.  ...+.||+|+.+..
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--~~~~~fD~V~ani~  193 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDLLVANLY  193 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEEEEEECC
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc--ccccccchhhhccc
Confidence            48999999999874 666665554 68999999999998877643   2343 33433322211  12478999997655


Q ss_pred             Cch---hHHHHHHhcccCcEEEEEcCC
Q 022313          254 GDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ...   .+..+.+.|+|+|+++..|..
T Consensus       194 ~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         194 AELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            432   345677899999999988765

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.75  E-value=0.0013  Score=53.49  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCEE----EeCC-CHHHHHHh-------cC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADKF----VVSS-DLEQMKAL-------GK  243 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v----~~~~-~~~~~~~~-------~~  243 (299)
                      +|+++||.|+ +++|+..+..+...|++|+++.+..++.+.+.   ...+...+    .+.. +.+.++++       .+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            6899999988 89999999999999999999887766554432   23332222    1222 32223221       26


Q ss_pred             CccEEEEcCCCc-----------------hhHHHHHHhcc-----cCcEEEEEcCC
Q 022313          244 SLDFIIDTASGD-----------------HPFDAYMSLLK-----VAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~~-----------------~~~~~~~~~l~-----~~G~~v~~g~~  277 (299)
                      ++|++++++|..                 .+.+.+++.|.     .+|+++.++..
T Consensus        84 ~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~  139 (254)
T d1sbya1          84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEech
Confidence            899999999952                 12444445553     35889888766

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0022  Score=52.55  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHH---hcCC-CEE-EeCCCHHHHHHh-cCCccE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALS---LLGA-DKF-VVSSDLEQMKAL-GKSLDF  247 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~---~~g~-~~v-~~~~~~~~~~~~-~~~~d~  247 (299)
                      ..++||++||=.|+|. |..++.+|+..+  .+|+.++.+++..+.+.+   ++|. +.+ +...+..  ... ...+|.
T Consensus        99 l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~--~~~~~~~~D~  175 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS--EGFDEKDVDA  175 (266)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG--GCCSCCSEEE
T ss_pred             hCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc--ccccccceee
Confidence            3349999999999875 777778888765  599999999988777643   3443 222 2222210  111 256898


Q ss_pred             EEEcCCCch-hHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGDH-PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+.....+. .+..+.+.|+|+|+++.+-..
T Consensus       176 V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         176 LFLDVPDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             EEECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             eEecCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            887777654 689999999999999977543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0028  Score=50.97  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=69.0

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCC---EEEeCCCHHHHHHhcC
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGAD---KFVVSSDLEQMKALGK  243 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~~~  243 (299)
                      ..+.....++||++||=+|+|. |..+..+++..|++|+.++.+++..+.++   ++.|..   .+...+- ..+ ...+
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~-~~~-~~~~   99 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGY-VANE   99 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC-TTC-CCSS
T ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH-hhc-cccC
Confidence            3455566679999999999864 56677788888999999999988776553   234532   2332221 111 1246


Q ss_pred             CccEEEEcCC------CchhHHHHHHhcccCcEEEEE
Q 022313          244 SLDFIIDTAS------GDHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       244 ~~d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~  274 (299)
                      .||+|+-.-.      -...+..+.+.|+|+|+++..
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence            7999975322      234578889999999998875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.73  E-value=0.006  Score=45.98  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcC-CCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLG-ADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      ++|+|+|.|.+|...+..++..|.  +|++++++++.++.+ ++.+ .+......+.    ......|+|+-|+....  
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a-~~~~~~~~~~~~~~~----~~~~~~dlIila~p~~~~~   76 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTSIAK----VEDFSPDFVMLSSPVRTFR   76 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESCGGG----GGGTCCSEEEECSCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH-HHhhcchhhhhhhhh----hhccccccccccCCchhhh
Confidence            369999999999999988888885  899999999999888 4666 4554432211    11245788888777543  


Q ss_pred             -hHHHHHHhcccCcEEEEEcCC
Q 022313          257 -PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 -~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       .+....+.++++..+++++..
T Consensus        77 ~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          77 EIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHHSCTTCEEEECCSC
T ss_pred             hhhhhhhccccccccccccccc
Confidence             244455667777777777664

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.65  E-value=0.0029  Score=50.53  Aligned_cols=97  Identities=20%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCchHHHHHHHhcC---CCEEE--eCCCHHHHHHhcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTSKKEEALSLLG---ADKFV--VSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~~~~~~~~~~g---~~~v~--~~~~~~~~~~~~~~~d~v~  249 (299)
                      .++||++||=+|+|. |..+..+++..|  .+|++++.++...+.+.+...   ....+  +....+........+|+++
T Consensus        70 ~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          70 PIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             ccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence            359999999999875 778888888775  499999999988887754432   22222  2222233333346789998


Q ss_pred             EcCCCch----hHHHHHHhcccCcEEEEE
Q 022313          250 DTASGDH----PFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       250 d~~g~~~----~~~~~~~~l~~~G~~v~~  274 (299)
                      .......    .+..+.+.|+++|+++..
T Consensus       149 ~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         149 EDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            7766432    367778899999998865

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.61  E-value=0.00047  Score=53.06  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             HHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc
Q 022313          170 TPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL  224 (299)
Q Consensus       170 ~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~  224 (299)
                      .+++....--++++|+|+|+|+.+.+++..+...+ ++.++.|+.++.+.+.+++
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~   60 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEI   60 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHH
Confidence            34443333268899999999999998887776555 9999999999888775554

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.56  E-value=0.0065  Score=49.50  Aligned_cols=75  Identities=19%  Similarity=0.107  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHhcCCCEEE--eCCCHHHHHH-------hcCC
Q 022313          180 PGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSK---KEEALSLLGADKFV--VSSDLEQMKA-------LGKS  244 (299)
Q Consensus       180 ~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~---~~~~~~~~g~~~v~--~~~~~~~~~~-------~~~~  244 (299)
                      +|+++||.|+ |  ++|.+.++.+...|++|++++++++.   .+++.++.+...+.  +..+.....+       ..+.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   83 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   83 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcCC
Confidence            6899999986 5  69999999999999999999998643   33333333332222  3333333222       2378


Q ss_pred             ccEEEEcCCC
Q 022313          245 LDFIIDTASG  254 (299)
Q Consensus       245 ~d~v~d~~g~  254 (299)
                      +|+++.+.+.
T Consensus        84 id~lV~nag~   93 (274)
T d2pd4a1          84 LDFIVHSVAF   93 (274)
T ss_dssp             EEEEEECCCC
T ss_pred             CCeEEeeccc
Confidence            9999998884

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.0015  Score=54.05  Aligned_cols=99  Identities=17%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC-EE-EeCCCHHHHHHhcCCcc
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD-KF-VVSSDLEQMKALGKSLD  246 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v-~~~~~~~~~~~~~~~~d  246 (299)
                      +-....+++|++||=+|+|. |..+..+++..|++|+.++.+++..+.+.++   .|.. .+ +...+   ..++.+.||
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d---~~~~~~~fD  119 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG---WEDFAEPVD  119 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC---GGGCCCCCS
T ss_pred             HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhh---hhhhccchh
Confidence            33344569999999999874 3456778888899999999999887766433   3421 11 11111   123457899


Q ss_pred             EEEE-----cCCCc---hhHHHHHHhcccCcEEEEE
Q 022313          247 FIID-----TASGD---HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       247 ~v~d-----~~g~~---~~~~~~~~~l~~~G~~v~~  274 (299)
                      .|+-     .++..   ..++.+.+.|+|+|+++.-
T Consensus       120 ~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         120 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence            8854     33333   3478889999999999763

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.53  E-value=0.006  Score=49.50  Aligned_cols=75  Identities=15%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCCE---EEeCCCHHHHHH--------h--
Q 022313          179 QPGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSKK-EEALSLLGADK---FVVSSDLEQMKA--------L--  241 (299)
Q Consensus       179 ~~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~~-~~~~~~~g~~~---v~~~~~~~~~~~--------~--  241 (299)
                      -+|+++||.|+ |  ++|++.++.+...|++|+++.++.++. +.+.++++...   ..+..+.+....        +  
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~   83 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   83 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcccc
Confidence            47899999985 4  599999999999999999999988876 44545666322   223333322211        1  


Q ss_pred             cCCccEEEEcCC
Q 022313          242 GKSLDFIIDTAS  253 (299)
Q Consensus       242 ~~~~d~v~d~~g  253 (299)
                      .+..|+++.+.|
T Consensus        84 ~~~ld~~i~~ag   95 (268)
T d2h7ma1          84 GNKLDGVVHSIG   95 (268)
T ss_dssp             TCCEEEEEECCC
T ss_pred             CCCcceeeeccc
Confidence            256899999988

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.004  Score=47.68  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH----------------------HHHHHHhcCCCEEEeCCCHH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK----------------------KEEALSLLGADKFVVSSDLE  236 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~----------------------~~~~~~~~g~~~v~~~~~~~  236 (299)
                      ...++|+|+|+|+.|+.|+..+...|.+|+++.+.+.-                      ..+..+++|.+-.++..-. 
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt-  119 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT-  119 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC-
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc-
Confidence            56789999999999999999999999999999976421                      1111133444333322110 


Q ss_pred             HHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          237 QMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                        .+....+|.|+-++|... .......+..+.++..+|..
T Consensus       120 --~~~~~~~d~vilAtG~~~-~~~~~pg~~~g~~v~viggg  157 (179)
T d1ps9a3         120 --ADQLQAFDETILASGIPN-RALAQPLIDSGKTVHLIGGC  157 (179)
T ss_dssp             --SSSSCCSSEEEECCCEEC-CTTHHHHHTTTCCEEECGGG
T ss_pred             --ccccccceeEEEeecCCC-cccccchhccCCEEEEECCc
Confidence              011257899999888754 22233334445555555543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0041  Score=43.65  Aligned_cols=65  Identities=12%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhc--CCccEE
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALG--KSLDFI  248 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~--~~~d~v  248 (299)
                      +.+|.|+|+|.+|.+.++.|+.+|.++++++.+++...   .++....+ .++++.+.+.++.  ...|+|
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA---~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA---MHVAHRSHVINMLDGDALRRVVELEKPHYI   78 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG---GGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch---hhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence            35699999999999999999999999999998866443   23333333 3566777777664  467888

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.46  E-value=0.0054  Score=50.33  Aligned_cols=104  Identities=18%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhcCCc
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALGKSL  245 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~  245 (299)
                      +.....++++.+||=+|+|. |..+..+++..+++|+.++.++...+.+.+.   .|..   .++..+ ...+.-..+.|
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d-~~~l~~~~~sf  136 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS-FLEIPCEDNSY  136 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC-TTSCSSCTTCE
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccc-ccccccccccc
Confidence            34455679999999999873 6677788888899999999998876665332   3321   232222 11111112679


Q ss_pred             cEEEEcCC-----C-chhHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTAS-----G-DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+|+-.-.     . ...+..+.+.|+|+|+++.....
T Consensus       137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            99975322     1 22578888999999998876433

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0028  Score=50.55  Aligned_cols=95  Identities=18%  Similarity=0.103  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CCEEEeCCCHHHH-HHh-cCCccEEE-EcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---ADKFVVSSDLEQM-KAL-GKSLDFII-DTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~~-~~~-~~~~d~v~-d~~  252 (299)
                      .+|.+||-+|+|. |..+..+++..+.++++++.+++-.+.+.+...   ....+...+.... ..+ .+.||.++ |..
T Consensus        52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGM-AIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccc-hHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            7889999999874 677788888766799999999998888855443   1111122222222 222 36798884 544


Q ss_pred             CCc----------hhHHHHHHhcccCcEEEEE
Q 022313          253 SGD----------HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       253 g~~----------~~~~~~~~~l~~~G~~v~~  274 (299)
                      ...          ..+..+.+.|+|||+++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            432          1356688999999999864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.36  E-value=0.0073  Score=47.08  Aligned_cols=80  Identities=24%  Similarity=0.263  Sum_probs=57.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      -.|++|+|.|.|.+|..+++++...|++|++.+.+.++.... ..+|.+.+ ..++     .+..+.|+.+=|..+...-
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~-~~~g~~~~-~~~~-----~~~~~~DI~iPcA~~~~I~   97 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAV-ALED-----VLSTPCDVFAPCAMGGVIT   97 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-CGGG-----GGGCCCSEEEECSCSCCBC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH-Hhhccccc-Cccc-----cccccceeeeccccccccc
Confidence            478999999999999999999999999999999998888887 56776433 2111     1235667776665544433


Q ss_pred             HHHHHhc
Q 022313          259 DAYMSLL  265 (299)
Q Consensus       259 ~~~~~~l  265 (299)
                      ....+.+
T Consensus        98 ~~~a~~i  104 (201)
T d1c1da1          98 TEVARTL  104 (201)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhh
Confidence            4444444

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.35  E-value=0.0066  Score=45.46  Aligned_cols=87  Identities=22%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHH-
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAY-  261 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~-  261 (299)
                      +|-|+|.|.+|...++-+...|.+|++.++++++.+.+. +.+....   ..   ..+.....|++|-|+..+...+.. 
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~~---~~---~~e~~~~~d~ii~~v~~~~~v~~v~   74 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAETA---ST---AKAIAEQCDVIITMLPNSPHVKEVA   74 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC---SS---HHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-Hhhhhhc---cc---HHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            478899999999999988889999999999999988884 5554221   11   112223456666666554433332 


Q ss_pred             ------HHhcccCcEEEEEcC
Q 022313          262 ------MSLLKVAGVYVLVGF  276 (299)
Q Consensus       262 ------~~~l~~~G~~v~~g~  276 (299)
                            ...++++..+++.+.
T Consensus        75 ~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          75 LGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             HSTTCHHHHCCTTCEEEECSC
T ss_pred             hCCcchhhccCCCCEEEECCC
Confidence                  233444445555443

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.33  E-value=0.036  Score=40.73  Aligned_cols=92  Identities=16%  Similarity=0.272  Sum_probs=67.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHC--CCeEEEEeCCc--hHHHHHHHhcCCCEEEeCCCH--HHHHH--------------
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAF--GLNVTVLSTST--SKKEEALSLLGADKFVVSSDL--EQMKA--------------  240 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~--g~~v~~~~~~~--~~~~~~~~~~g~~~v~~~~~~--~~~~~--------------  240 (299)
                      ++|.|+|+ |.+|..+..+.+..  ..+|+.++...  +.+.+..++|....+...++.  +.+..              
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            78999999 99999999999976  35777776443  345555578988777655432  11111              


Q ss_pred             ----h-cCCccEEEEcCCCchhHHHHHHhcccCcEEEE
Q 022313          241 ----L-GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       241 ----~-~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  273 (299)
                          + ...+|+++.++.|...+...+.+++.+-++.+
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaL  120 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVAL  120 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHhcCCEEEE
Confidence                1 24689999998888889999999988876544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.32  E-value=0.025  Score=42.72  Aligned_cols=94  Identities=21%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--CEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--DKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .+|-|+|.|.+|...+.-+...|.+|++.++++++.+.+.++ ++  .........+...+.....|.++.++....   
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-EAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-TTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh-ccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            468899999999999999999999999999999999888533 32  111112223344444455566666555433   


Q ss_pred             -hHHHHHHhcccCcEEEEEcC
Q 022313          257 -PFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       257 -~~~~~~~~l~~~G~~v~~g~  276 (299)
                       ..+.....++++-.+++.+.
T Consensus        82 ~v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             HHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHhccccCcEEEecCc
Confidence             22333444555555555543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0033  Score=50.15  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCC----
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTAS----  253 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g----  253 (299)
                      ++++.+||=+|+| .|..+..+++ .|++|++++.+++.++.+.++ +...++..+.. .+....+.||+|+....    
T Consensus        40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~-~~~~~~~~~~~-~l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          40 LKNPCRVLDLGGG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVAREK-GVKNVVEAKAE-DLPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCSCCEEEEETCT-TCHHHHHHHT-TTCEEEEEESCHHHHHHHHHH-TCSCEEECCTT-SCCSCTTCEEEEEECSSHHHH
T ss_pred             cCCCCEEEEECCC-Cchhcccccc-cceEEEEeecccccccccccc-ccccccccccc-ccccccccccceeeecchhhh
Confidence            3677889888998 4888888876 588999999999999988544 44444433221 12212367999986433    


Q ss_pred             --C-chhHHHHHHhcccCcEEEEE
Q 022313          254 --G-DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       254 --~-~~~~~~~~~~l~~~G~~v~~  274 (299)
                        + ...++.+.+.|++||.++..
T Consensus       116 ~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         116 VENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHhhcCcCcEEEEE
Confidence              1 22467788999999998764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.32  E-value=0.005  Score=48.29  Aligned_cols=94  Identities=17%  Similarity=0.252  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-CEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-DKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      ++++.+||=+|+|. |..+..+++ .+++|++++.+++-.+.+++..   +. ...+..+ ...+..-.+.||+|+-.-.
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d-~~~l~~~~~~fD~I~~~~~  111 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGD-ARKLSFEDKTFDYVIFIDS  111 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECC-TTSCCSCTTCEEEEEEESC
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh-hhcccccccccccchhhhhhhhccccccccccccc-cccccccCcCceEEEEecc
Confidence            47788999999975 777777776 4889999999988887764432   32 2222221 1111111367999876433


Q ss_pred             C-----c---hhHHHHHHhcccCcEEEEE
Q 022313          254 G-----D---HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       254 ~-----~---~~~~~~~~~l~~~G~~v~~  274 (299)
                      -     .   ..++.+.+.|+|||+++..
T Consensus       112 l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         112 IVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            1     1   1477788999999998754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.0067  Score=47.60  Aligned_cols=71  Identities=23%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCCCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .+|||.|+ |.+|...+..+...|.  .|+.+.|++++...+  .-+.+.+ .+..+.+...+.-+++|.|+.+++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc--cCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            68999998 9999999999998886  566677877665544  1233333 2455566666666889999998763

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.27  E-value=0.0035  Score=49.95  Aligned_cols=100  Identities=22%  Similarity=0.299  Sum_probs=65.4

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC--EEEeCCCHHHHHHhcCCcc
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD--KFVVSSDLEQMKALGKSLD  246 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d  246 (299)
                      +.....+++|++||=+|+|. |..+..+++. +.+|+.++.+++-++.+.+.   .+.+  .++..+. +.+.-..+.||
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD   84 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFD   84 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEE
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccccccccccccc-ccccccccccc
Confidence            33455569999999999874 6677777764 67999999998877665333   2322  2222211 11111136799


Q ss_pred             EEEEcCCC------chhHHHHHHhcccCcEEEEE
Q 022313          247 FIIDTASG------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       247 ~v~d~~g~------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +|+-.-.-      ...++.+.+.|+|+|+++..
T Consensus        85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            99864332      23588889999999998875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.26  E-value=0.02  Score=43.33  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=64.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEe-CCchHHHHHHHhcCCCEEEeCCC-HHHH-----------HHhcCCccEE
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLS-TSTSKKEEALSLLGADKFVVSSD-LEQM-----------KALGKSLDFI  248 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~-~~~~~~~~~~~~~g~~~v~~~~~-~~~~-----------~~~~~~~d~v  248 (299)
                      +|.|.|-|.+|....+.+.... ..++.+. .++......+.+.+.+......+ ....           .++..++|+|
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDvV   83 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCEE
Confidence            6889999999999888887554 4655553 44444333335666544332221 1111           1223589999


Q ss_pred             EEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +||+|.-...+.+-..+..+-+.+..+.+
T Consensus        84 iEcTG~f~~~~~~~~hl~~G~k~Vi~s~~  112 (172)
T d2czca2          84 VDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (172)
T ss_dssp             EECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             EECCCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            99999887778888899999999998887

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.26  E-value=0.0061  Score=50.44  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             hccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCE-E-EeCCCHHHHHHhcCCccEE
Q 022313          174 RHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADK-F-VVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       174 ~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~-v-~~~~~~~~~~~~~~~~d~v  248 (299)
                      ....+++|++||=+|+|- |-.+..+|+..|++|+.++.+++..+.+.   ++.|... + +...+.   ....+.||.|
T Consensus        55 ~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~fD~i  130 (291)
T d1kpia_          55 DKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRI  130 (291)
T ss_dssp             HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEE
T ss_pred             HhcCCCCCCEEEEecCcc-hHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cccccccceE
Confidence            344569999999999863 44677888888999999999988765542   3345321 1 111121   2334789988


Q ss_pred             EE-----cCCC----------chhHHHHHHhcccCcEEEEE
Q 022313          249 ID-----TASG----------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       249 ~d-----~~g~----------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      +.     ..+.          ...++.+.+.|+|+|+++.-
T Consensus       131 ~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         131 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             eechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            64     3332          13588899999999999853

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.02  Score=43.17  Aligned_cols=97  Identities=12%  Similarity=0.092  Sum_probs=73.7

Q ss_pred             ccccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHH
Q 022313          158 AAPLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLE  236 (299)
Q Consensus       158 aa~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  236 (299)
                      -+.+||...+.+..++....--.|++|.|+|. ..+|.-.+.++...|++|+++........+.                
T Consensus        16 ~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~----------------   79 (170)
T d1a4ia1          16 DCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEE----------------   79 (170)
T ss_dssp             SCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHH----------------
T ss_pred             CCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHH----------------
Confidence            35678888888888877766579999999998 6899999999999999999988765444433                


Q ss_pred             HHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          237 QMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                           .+..|+++-++|.+..+.  -+.++++-.++++|..
T Consensus        80 -----~~~aDivi~a~G~~~~i~--~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          80 -----VNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             -----HTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCB
T ss_pred             -----Hhhccchhhccccccccc--cccccCCCeEeccCcc
Confidence                 145778888888765322  3578888888888754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.016  Score=43.40  Aligned_cols=96  Identities=18%  Similarity=0.122  Sum_probs=72.0

Q ss_pred             cccchhhHHHHHHhhhccCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH
Q 022313          159 APLLCAGITVYTPMMRHKMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ  237 (299)
Q Consensus       159 a~~~~~~~ta~~al~~~~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  237 (299)
                      ..+||...+.+..++....--.|++++|+|. ..+|.-...++...|++|++.......++...                
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~----------------   78 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV----------------   78 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH----------------
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH----------------
Confidence            4677777777777877665578999999998 67999999999999999988876554443321                


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                           +..|+++-++|.+..+.  -+.++++..++++|..
T Consensus        79 -----~~ADivI~a~G~p~~i~--~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          79 -----ENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             -----HHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred             -----hhhhHhhhhccCccccc--ccccCCCcEEEecCce
Confidence                 34778888888765332  3577888888888865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0092  Score=50.07  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcC--------------CCE--EEeCCCHHHH
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLG--------------ADK--FVVSSDLEQM  238 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g--------------~~~--v~~~~~~~~~  238 (299)
                      .++||++||=.|+|+ |.++..+|+..|.  +|+.++.+++..+.+++.+-              .+.  +...+-.+..
T Consensus        95 ~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          95 DINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence            349999999999875 7788888887764  89999999988877644321              111  1111111111


Q ss_pred             HHh-cCCccEEEEcCCCc-hhHHHHHHhcccCcEEEEEcC
Q 022313          239 KAL-GKSLDFIIDTASGD-HPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       239 ~~~-~~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      ..+ ...||.||--...+ ..+..+.+.|+|+|+++.+-.
T Consensus       174 ~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         174 EDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             -------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             cccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeC
Confidence            111 24689888655554 368899999999999998753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.13  E-value=0.018  Score=42.91  Aligned_cols=44  Identities=25%  Similarity=0.274  Sum_probs=37.4

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA  226 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~  226 (299)
                      ++|.++|.|.+|...+.-+...|.+|++.+++.++.+.+ .+.+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~-~~~~~   45 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-VAAGA   45 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhh-hhhhc
Confidence            368899999999988888888899999999999988877 45554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.13  E-value=0.004  Score=49.28  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCCC--EEEeCCCHHHHHHhcCCccEEE
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGAD--KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ...++++++||=+|+| .|..+..+++. +++|+.++.+++-.+.+++   +.+.+  .++..+. ..+.-..+.||+|+
T Consensus        10 ~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~-~~l~~~~~~fD~v~   86 (231)
T d1vl5a_          10 IAALKGNEEVLDVATG-GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDERFHIVT   86 (231)
T ss_dssp             HHTCCSCCEEEEETCT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEE
T ss_pred             hcCCCCcCEEEEeccc-CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccccccccc-cccccccccccccc
Confidence            4456999999999987 46666666654 7899999999887766533   33432  2332221 11111136799998


Q ss_pred             EcCC-----Cc-hhHHHHHHhcccCcEEEEE
Q 022313          250 DTAS-----GD-HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       250 d~~g-----~~-~~~~~~~~~l~~~G~~v~~  274 (299)
                      -.-.     .. ..+..+.+.|+|+|+++..
T Consensus        87 ~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          87 CRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            6433     22 3578899999999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.13  E-value=0.014  Score=46.49  Aligned_cols=97  Identities=10%  Similarity=0.073  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC---CCEEEeCC--CHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG---ADKFVVSS--DLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~--~~~~~~~~~~~~d~v~d  250 (299)
                      .++||++||=+|+|. |..+..+++... ..|++++.++.-.+.+.+...   ....+..+  ...........+|+++.
T Consensus        71 ~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~  149 (230)
T d1g8sa_          71 PIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeec
Confidence            459999999999864 677777777643 499999999988887754422   22222222  22222222345677777


Q ss_pred             cCCCch----hHHHHHHhcccCcEEEEE
Q 022313          251 TASGDH----PFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 ~~g~~~----~~~~~~~~l~~~G~~v~~  274 (299)
                      ......    .+..+.+.|+++|.++..
T Consensus       150 ~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         150 DVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccchHHHHHHHHHHHHhcccCceEEEE
Confidence            665432    366778899999998876

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.09  E-value=0.02  Score=46.01  Aligned_cols=78  Identities=24%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             CCCCCCEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCch---HHHHHH---HhcCCCEE---EeCCCHHHHHHh----
Q 022313          177 MNQPGKSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTS---KKEEAL---SLLGADKF---VVSSDLEQMKAL----  241 (299)
Q Consensus       177 ~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~---~~~~~~---~~~g~~~v---~~~~~~~~~~~~----  241 (299)
                      .++|+.++||.|+ +++|+..++.+...|+ +|+++.|++.   ..+++.   ++.|....   .|..+.+.++++    
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            3589999999997 8999999999988898 5777877632   222222   34564322   244455554443    


Q ss_pred             c--CCccEEEEcCCC
Q 022313          242 G--KSLDFIIDTASG  254 (299)
Q Consensus       242 ~--~~~d~v~d~~g~  254 (299)
                      .  .+.|.++.+.|.
T Consensus        85 ~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          85 GDDVPLSAVFHAAAT   99 (259)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             ccccccccccccccc
Confidence            1  468999998883

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.09  E-value=0.0068  Score=47.12  Aligned_cols=86  Identities=22%  Similarity=0.249  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      .|++|.|+|.|.+|...+++++.+|.+|+++++........   -+.    ...   .+.++-...|++..++....   
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~---~~~----~~~---~l~~~l~~sDii~~~~plt~~T~  111 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK---KGY----YVD---SLDDLYKQADVISLHVPDVPANV  111 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH---TTC----BCS---CHHHHHHHCSEEEECSCCCGGGT
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCccccccccc---cee----eec---cccccccccccccccCCcccccc
Confidence            57999999999999999999999999999998765443322   111    011   12222233566665554211   


Q ss_pred             --hHHHHHHhcccCcEEEEEc
Q 022313          257 --PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 --~~~~~~~~l~~~G~~v~~g  275 (299)
                        .-...++.|+++..+|-++
T Consensus       112 ~li~~~~l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         112 HMINDESIAKMKQDVVIVNVS  132 (197)
T ss_dssp             TCBSHHHHHHSCTTEEEEECS
T ss_pred             ccccHHHHhhhCCccEEEecC
Confidence              1244556666666666554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.08  E-value=0.031  Score=42.61  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---hcCC-C--EEEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS---LLGA-D--KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~---~~g~-~--~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .++++++||=+|+|. |..++.+|+. +.+|+.++.+++..+.+++   +.|. +  +++.. +..........+|.|+-
T Consensus        30 ~~~~g~~VLDiGcGs-G~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-da~~~~~~~~~~D~v~~  106 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGT-GGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-DAPEALCKIPDIDIAVV  106 (186)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-CHHHHHTTSCCEEEEEE
T ss_pred             CCCCCCEEEEEECCe-Eccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-chhhcccccCCcCEEEE
Confidence            348999999898753 4445566654 5699999999887776643   3553 2  23333 22222223478999986


Q ss_pred             cCCCc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASGD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .....   ..++.+.+.|+++|+++.....
T Consensus       107 ~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         107 GGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             SCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             eCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            55432   3477788999999999876544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.00057  Score=51.57  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC--C---EEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA--D---KFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      +|+|+|+|.+|.+.+..+...|.+|.++++++++.+.. +..+.  .   ..+.....+.    .+.+|++|-++.... 
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~D~iii~vka~~-   75 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDPDF----LATSDLLLVTLKAWQ-   75 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCHHH----HHTCSEEEECSCGGG-
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-ccccCCccccccccccchhhh----hcccceEEEeecccc-
Confidence            68999999999999988888999999999987654433 12221  1   1122222222    257999999999866 


Q ss_pred             HHHHH----HhcccCcEEEEE
Q 022313          258 FDAYM----SLLKVAGVYVLV  274 (299)
Q Consensus       258 ~~~~~----~~l~~~G~~v~~  274 (299)
                      ...++    ..+.++..++.+
T Consensus        76 ~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          76 VSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEE
T ss_pred             hHHHHHhhccccCcccEEeec
Confidence            44433    455556666665

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.98  E-value=0.023  Score=44.41  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=64.8

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHh---cCCCEEEeC--CCHHHHHHhcCCccEEE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSL---LGADKFVVS--SDLEQMKALGKSLDFII  249 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~---~g~~~v~~~--~~~~~~~~~~~~~d~v~  249 (299)
                      ..++||++||=+|+|. |..+..+++..+ .+|++++.+++..+.+.+.   .+....+..  .+..........+|+++
T Consensus        52 l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          52 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence            3469999999999864 567777777665 3999999999877766433   332222211  12222222235688887


Q ss_pred             EcCCCch----hHHHHHHhcccCcEEEEEc
Q 022313          250 DTASGDH----PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       250 d~~g~~~----~~~~~~~~l~~~G~~v~~g  275 (299)
                      .......    .+..+.+.|+++|+++..-
T Consensus       131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         131 QDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            7654322    4667789999999998763

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.93  E-value=0.0067  Score=46.98  Aligned_cols=37  Identities=41%  Similarity=0.644  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      -.|++|.|+|.|.+|...++.++.+|.+|+..++...
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eeCceEEEeccccccccceeeeeccccceeeccCccc
Confidence            4678999999999999999999999999999997644

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.89  E-value=0.01  Score=45.55  Aligned_cols=40  Identities=33%  Similarity=0.508  Sum_probs=35.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKE  218 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~  218 (299)
                      -.++++.|+|.|.+|...++.++.+|.+|+..++......
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~   81 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR   81 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhH
Confidence            4678999999999999999999999999999998755443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.086  Score=38.52  Aligned_cols=93  Identities=22%  Similarity=0.104  Sum_probs=62.7

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCch
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~  256 (299)
                      +.++|.|.|.+|...++.+...|.++++++.++++.....++   .|...+. +..+++.+++.. ..+|.++-+++...
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence            468999999999999999999999999999887654333222   2443332 445667777665 78999999888754


Q ss_pred             h---HHHHHHhcccCcEEEEE
Q 022313          257 P---FDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       257 ~---~~~~~~~l~~~G~~v~~  274 (299)
                      .   .....+.+.+.-+++..
T Consensus        84 ~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          84 DNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHhCCCCceEEE
Confidence            2   22223445555555544

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.026  Score=46.27  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEE---eCCch---HHHHHHHhcC---CC-E--EEeCCCHHHHHHh-----cCC
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVL---STSTS---KKEEALSLLG---AD-K--FVVSSDLEQMKAL-----GKS  244 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~---~~~~~---~~~~~~~~~g---~~-~--v~~~~~~~~~~~~-----~~~  244 (299)
                      .|||.|+ +++|.+.+..+...|++++.+   .++.+   ++.+..+++.   .. .  ..|..+.+.+.++     .+.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            4566687 899999999999899875444   44433   3333334432   22 1  2244455554433     267


Q ss_pred             ccEEEEcCCCc-------------------------hhHHHHHHhcc--cCcEEEEEcCC
Q 022313          245 LDFIIDTASGD-------------------------HPFDAYMSLLK--VAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  277 (299)
                      .|+++++.|..                         .+.+.++..|+  .+|+++.+++.
T Consensus        84 idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~  143 (285)
T d1jtva_          84 VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV  143 (285)
T ss_dssp             CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEG
T ss_pred             hhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEech
Confidence            99999998842                         12445555553  35899998776

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.77  E-value=0.013  Score=46.50  Aligned_cols=50  Identities=24%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK  228 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~  228 (299)
                      -.|++|+|.|.|.+|..+++++...|+++++++.+......+....|.+.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~   86 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA   86 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcc
Confidence            57899999999999999999999999999999999999888877777643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.75  E-value=0.011  Score=45.28  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch--
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH--  256 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~--  256 (299)
                      -.|++|.|+|.|.+|...+++++.+|.+|++.++.+.+.        .....     +.+.++-...|+|+.++.-.+  
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~--------~~~~~-----~~l~ell~~sDiv~~~~pl~~~t  106 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG--------PWRFT-----NSLEEALREARAAVCALPLNKHT  106 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS--------SSCCB-----SCSHHHHTTCSEEEECCCCSTTT
T ss_pred             ccCceEEEeccccccccceeeeecccccccccccccccc--------ceeee-----echhhhhhccchhhccccccccc
Confidence            367899999999999999999999999999999874321        11111     123344466788877665321  


Q ss_pred             ---hHHHHHHhcccCcEEEEEc
Q 022313          257 ---PFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 ---~~~~~~~~l~~~G~~v~~g  275 (299)
                         .-...++.|+++..++.+|
T Consensus       107 ~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         107 RGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             TTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccccccceeeeccccceEEecc
Confidence               2356777888888888776

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.72  E-value=0.042  Score=41.66  Aligned_cols=95  Identities=15%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEeC-CchHHHHHHHhcCCCEEEeCCCHHHH-----------HHhcCCccEEE
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLST-STSKKEEALSLLGADKFVVSSDLEQM-----------KALGKSLDFII  249 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~-----------~~~~~~~d~v~  249 (299)
                      +|.|.|.|-+|+...+.+.... .+++++.. .+.....+..+.+.......+.....           .+...++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            5889999999999999998765 47777644 33333333234443332222222221           12224689999


Q ss_pred             EcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          250 DTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ||+|.-...+.+...++.+-+++..|..
T Consensus        83 ecTG~f~~~e~a~~hl~~G~KvIi~~~~  110 (178)
T d1b7go1          83 DTTPNGVGAQYKPIYLQLQRNAIFQGGE  110 (178)
T ss_dssp             ECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             ECCCCcCCHHHHHHHHHcCCEEEEECCC
Confidence            9999866566677777777687777554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.72  E-value=0.0071  Score=50.96  Aligned_cols=79  Identities=18%  Similarity=0.019  Sum_probs=54.5

Q ss_pred             cCCCCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh----cC--CCEEE--eCCCHHHHHHhcCCcc
Q 022313          176 KMNQPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL----LG--ADKFV--VSSDLEQMKALGKSLD  246 (299)
Q Consensus       176 ~~~~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~----~g--~~~v~--~~~~~~~~~~~~~~~d  246 (299)
                      ..+.+|++|||.|+ |-+|...+..+...|++|++++|+.++...+.+.    ..  ...++  +..+...+.++-.++|
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   85 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccch
Confidence            34588999999998 9999999998888899999999987766554211    11  11222  2223333444446889


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      .++.+...
T Consensus        86 ~v~~~a~~   93 (342)
T d1y1pa1          86 GVAHIASV   93 (342)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhccc
Confidence            99887775

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.68  E-value=0.013  Score=44.09  Aligned_cols=94  Identities=13%  Similarity=0.246  Sum_probs=64.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHhc----CC---C---------------EEEeCCCHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS---TSKKEEALSLL----GA---D---------------KFVVSSDLEQ  237 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~---~~~~~~~~~~~----g~---~---------------~v~~~~~~~~  237 (299)
                      +|.|.|-|-+|+++.+.+...+..++++-..   .+....+. ++    |.   +               .+.+..+++.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLl-kyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMF-KYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHH-HCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHH-hcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            5789999999999999998888877777543   23444443 22    21   0               1223333444


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.|-..++|+|+||+|--...+.+...+..+-+-+.+..+
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP  120 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP  120 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCC
Confidence            4444468999999999877788888888888766767665

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.68  E-value=0.0065  Score=48.90  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=47.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHH---HCCCeEEEEeCCchHHHHHH---HhcCCCEEE--eCCCHHHHH----H---h--cC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGK---AFGLNVTVLSTSTSKKEEAL---SLLGADKFV--VSSDLEQMK----A---L--GK  243 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~---~~g~~v~~~~~~~~~~~~~~---~~~g~~~v~--~~~~~~~~~----~---~--~~  243 (299)
                      ++|||.|+ +++|++.++.+.   ..|++|++++|++++.+.+.   ++.+.-.++  |..+.+.++    +   .  .+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            57999998 899999886654   35789999999988766553   222222222  333433222    1   1  25


Q ss_pred             CccEEEEcCC
Q 022313          244 SLDFIIDTAS  253 (299)
Q Consensus       244 ~~d~v~d~~g  253 (299)
                      ++|+++++.|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            7999999987

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.01  Score=47.96  Aligned_cols=74  Identities=19%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHH---CCCeEEEEeCCchHHHHHHHhcC----CCEE----EeCCCHHHHHHh------
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKA---FGLNVTVLSTSTSKKEEALSLLG----ADKF----VVSSDLEQMKAL------  241 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~---~g~~v~~~~~~~~~~~~~~~~~g----~~~v----~~~~~~~~~~~~------  241 (299)
                      +|+.++|.|+ +++|++.++.+..   .|++|++++|++++++.+.+++.    ..++    .|-.+.+.++++      
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            5677788888 8999988765542   58999999999998887755542    2222    244454443332      


Q ss_pred             -----cCCccEEEEcCC
Q 022313          242 -----GKSLDFIIDTAS  253 (299)
Q Consensus       242 -----~~~~d~v~d~~g  253 (299)
                           ....|+++++.|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence                 135688888766

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.05  Score=36.70  Aligned_cols=72  Identities=14%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcCChHHHHH-HHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          178 NQPGKSLGVIGLGGLGHMA-VKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a-~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ++..+++.++|.|++|..+ +++++..|..|...+.......+..++.|..... .+..+.+    .+.|+|+-..+-
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~-g~~~~~i----~~~d~vV~S~AI   77 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYI-GHAEEHI----EGASVVVVSSAI   77 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEE-SCCGGGG----TTCSEEEECTTS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEE-CCccccC----CCCCEEEECCCc
Confidence            4677889999998888777 8999999999999998755444433677875443 3333322    568888876663

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.012  Score=43.37  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLST  212 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~  212 (299)
                      -.|++|||+|+|.+|..-+..+...|++|+++..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            5789999999999999999999999999999964

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.011  Score=48.25  Aligned_cols=94  Identities=19%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      .++.+||=+|+|. |..+..+++.. +.+++.++.+++.++.+.+....-.++..+. ..+.-..+.||+|+....-.. 
T Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~-  159 (268)
T d1p91a_          83 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYAPCK-  159 (268)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESCCCC-
T ss_pred             CCCCEEEEeCCCC-cHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh-hhccCCCCCEEEEeecCCHHH-
Confidence            6778888889864 66666777765 5699999999998888866655333332221 111112367999997665554 


Q ss_pred             HHHHHHhcccCcEEEEEc
Q 022313          258 FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g  275 (299)
                      +..+.+.|+|+|.++...
T Consensus       160 ~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         160 AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEe
Confidence            889999999999998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.024  Score=45.47  Aligned_cols=76  Identities=13%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchHHHHH---HHhcCCCEEEeCC--CHHHHHH-------hcC
Q 022313          179 QPGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSKKEEA---LSLLGADKFVVSS--DLEQMKA-------LGK  243 (299)
Q Consensus       179 ~~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v~~~~--~~~~~~~-------~~~  243 (299)
                      =+|+++||.|+ +  ++|.+.+..+...|++|++..++++..+.+   .+..+.......+  +......       ..+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            36899999987 5  688999999999999999999987655443   2333433333222  2222221       136


Q ss_pred             CccEEEEcCCC
Q 022313          244 SLDFIIDTASG  254 (299)
Q Consensus       244 ~~d~v~d~~g~  254 (299)
                      ..|+.+++.+.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            78999988763

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.49  E-value=0.018  Score=44.10  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=36.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL  221 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~  221 (299)
                      .=++|.|+|+|.+|...+.++...|.+|++++++++.++.+.
T Consensus         3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGL   44 (186)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhh
Confidence            346799999999999999888889999999999988776553

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0045  Score=49.27  Aligned_cols=73  Identities=19%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcC-CCEE-EeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLG-ADKF-VVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g-~~~v-~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ++++|||+|+ |.+|...++.+...|.  +|++++|.+.....-  ... .... .|..+.+.+...-.++|+++.++|.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--GGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--ccceeeeeeecccccccccccccccccccccccc
Confidence            4578999998 9999999998887775  899999875443221  111 2222 2333334444445789999999985

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.42  E-value=0.016  Score=44.61  Aligned_cols=37  Identities=24%  Similarity=0.579  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK  216 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~  216 (299)
                      .|+++.|+|.|.+|...+++++..|.+++..++....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             cccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            5799999999999999999999999999999876543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=95.39  E-value=0.039  Score=45.87  Aligned_cols=95  Identities=14%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcC----------CCEEEeCCCHHHHHHhcCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLG----------ADKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g----------~~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      ...++|||+|.|. |..+-.+++... .+|.++..+++-.+.+++-+.          .-+++..+..+.+++..+.||+
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            5568899998764 455556666654 489999999887777754442          1245545545666666788999


Q ss_pred             EEEcCCC-------------chhHHHHHHhcccCcEEEEE
Q 022313          248 IIDTASG-------------DHPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       248 v~d~~g~-------------~~~~~~~~~~l~~~G~~v~~  274 (299)
                      |+--...             ...++.+.+.|+++|.++.-
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            9753311             12467888999999998864

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.39  E-value=0.048  Score=44.39  Aligned_cols=96  Identities=17%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc----C-----CCEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL----G-----ADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~----g-----~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .+.++|||+|.|. |..+..++++.+. +|.++..+++-.+.+++-+    +     .-.++..+....++...+.+|+|
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            5568999998754 4455566666554 8999999888777764333    2     12455555556676666889999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +--...          ...++.+.+.|+++|.++.-.
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            754332          234888999999999998764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.35  E-value=0.024  Score=43.47  Aligned_cols=38  Identities=11%  Similarity=0.206  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK  216 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~  216 (299)
                      -.+.++.|+|.|.+|...++.++.+|.+|...++....
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   79 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP   79 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCC
T ss_pred             ccccceeeccccccchhhhhhhhccCceEEEEeecccc
Confidence            36789999999999999999999999999999976443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.31  E-value=0.0073  Score=46.59  Aligned_cols=81  Identities=10%  Similarity=0.068  Sum_probs=57.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc-CC---------CEEEeCCCHHHHHHhcCCccEEEEc
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL-GA---------DKFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~-g~---------~~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      .+|.|+|+|..|.+.+..+...|.+|.+.+++++..+.+.+.- ..         +.+....   .+.+.-++.|+++-+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~---~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTS---DVEKAYNGAEIILFV   84 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEES---CHHHHHTTCSCEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccch---hhhhccCCCCEEEEc
Confidence            4699999999999999999888889999999988887773221 11         1111111   233444678999999


Q ss_pred             CCCchhHHHHHHhcc
Q 022313          252 ASGDHPFDAYMSLLK  266 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~  266 (299)
                      +.... ++..++.++
T Consensus        85 vPs~~-~~~~~~~~~   98 (189)
T d1n1ea2          85 IPTQF-LRGFFEKSG   98 (189)
T ss_dssp             SCHHH-HHHHHHHHC
T ss_pred             CcHHH-HHHHHHHHH
Confidence            98765 667666554

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.036  Score=45.42  Aligned_cols=96  Identities=21%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      ...++|||+|+|. |..+-.+++..+. +|.++.-+++-.+.+++-+.         ..+++..+....+++..+.+|+|
T Consensus        77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            4558899998754 4445556665544 88888888877777643331         22344444445566556789999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +--...          ...++.+.+.|+++|.++.-.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            754332          234778889999999998754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.26  E-value=0.03  Score=44.44  Aligned_cols=91  Identities=16%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-CEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-DKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ++.++||=+|+|. |..+..+++ .|++|++++.+++-++.+++++   +. -.++..+ ...+ ...+.||+|+...+.
T Consensus        40 ~~~~~iLDiGcGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d-~~~l-~~~~~fD~I~~~~~~  115 (251)
T d1wzna1          40 REVRRVLDLACGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD-VLEI-AFKNEFDAVTMFFST  115 (251)
T ss_dssp             SCCCEEEEETCTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC-GGGC-CCCSCEEEEEECSSG
T ss_pred             CCCCEEEEeCCCC-Cccchhhcc-cceEEEEEeeccccccccccccccccccchheehh-hhhc-ccccccchHhhhhhh
Confidence            7778899999975 777777776 5889999999988777765443   22 2233222 2221 123679999865432


Q ss_pred             ------c---hhHHHHHHhcccCcEEEE
Q 022313          255 ------D---HPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       255 ------~---~~~~~~~~~l~~~G~~v~  273 (299)
                            .   ..++.+.+.|+|+|+++.
T Consensus       116 ~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         116 IMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence                  1   246778899999999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.24  E-value=0.052  Score=44.23  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC---------------CEEEeCCCHHHHHHhcC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA---------------DKFVVSSDLEQMKALGK  243 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~---------------~~v~~~~~~~~~~~~~~  243 (299)
                      .+.++|||+|+|. |..+-.+++....+|.++..+++-.+.+++-++.               -+++..+....+++ .+
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  148 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCceEEEecCCc-hHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence            5668999998753 3333444554444899888887777766433331               13444444444543 57


Q ss_pred             CccEEEEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          244 SLDFIIDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       244 ~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .+|+|+--...          ...++.+.+.|+++|.++.-+
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            89999753332          234778899999999988654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.23  E-value=0.13  Score=38.58  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=61.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC-eEEEEe-CCch-HHHHHHHhcCCCEEEeCCCHH-HH-----------HHhcCCccE
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL-NVTVLS-TSTS-KKEEALSLLGADKFVVSSDLE-QM-----------KALGKSLDF  247 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~-~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-----------~~~~~~~d~  247 (299)
                      +|.|.|-|.+|....+++...+- +++.+. .++. ....+ .+++.+......+.. ..           .++..++|+
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMA-LKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHH-HHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHH-HhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            68899999999999998876653 665554 3333 33344 456655433222211 11           112258999


Q ss_pred             EEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+||+|.-.....+-..+..+-+.+..+..
T Consensus        82 ViEcTG~f~~~~~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          82 VIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             EEECCSTTHHHHHHHHHHHTTCEEEECTTS
T ss_pred             EEEccCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            999999876667777788888888887666

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0087  Score=38.91  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKK  217 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~  217 (299)
                      ++|.|+|+|.+|.+.++.++.+|.++.+++.+++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            479999999999999999999999999999876544

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.19  E-value=0.046  Score=45.28  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCC---------CEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGA---------DKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      ...++|||+|.|. |..+-.++++... +|.++..+++-.+.+.+-++.         .+++..+..+.+++..+.||+|
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            4567899998764 3444566665554 899999888877777443431         1333334345566666889999


Q ss_pred             EEcCCC----------chhHHHHHHhcccCcEEEEEcCC
Q 022313          249 IDTASG----------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       249 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +--+..          ...++.+.++|+++|.++.-+..
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            854332          22477888999999999987533

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.17  E-value=0.0098  Score=45.42  Aligned_cols=36  Identities=14%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS  215 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~  215 (299)
                      .+++|+|+|+|..|+.++..+.+.|+ .|+++.+.+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            35789999999999999999999998 5999987754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=95.02  E-value=0.052  Score=40.71  Aligned_cols=94  Identities=13%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEeCC---chHHHHHHHhc----CC---C---------------EEEeCCCHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTS---TSKKEEALSLL----GA---D---------------KFVVSSDLE  236 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~---~~~~~~~~~~~----g~---~---------------~v~~~~~~~  236 (299)
                      +|.|.|-|-+|+++.+.+.... .+++++-..   .+....+. ++    |.   +               .+.+.++++
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMF-QYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHH-hhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            5889999999999998777554 577777542   23344443 22    21   0               122333344


Q ss_pred             HHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          237 QMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+.+-..++|+|+||+|--.....+...+..+-+-+.+..+
T Consensus        82 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP  122 (169)
T d1u8fo1          82 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  122 (169)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             hCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccc
Confidence            44444468999999999876677777788888766666655

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.98  E-value=0.013  Score=47.42  Aligned_cols=33  Identities=42%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      +++|+|+|+|..|+.|+..++..|.+|+++..+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            578999999999999999999999999999865

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.98  E-value=0.058  Score=43.77  Aligned_cols=74  Identities=20%  Similarity=0.240  Sum_probs=51.2

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH-----HHHH--HHhcCCCEEE-eCCCHHHHHHhcCCccEEEEc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK-----KEEA--LSLLGADKFV-VSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~-----~~~~--~~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      -++|||+|+ |.+|...+..+...|.+|++++|+...     .+.+  .+..+++.+. +..+.+.+.+...+.+.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            356999998 999999999999899999999986431     2221  1233444332 445566666666788888887


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      .+.
T Consensus        83 ~~~   85 (312)
T d1qyda_          83 LAG   85 (312)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.97  E-value=0.057  Score=44.28  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHHhc-CCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKALG-KSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~-~~~d~  247 (299)
                      ...++|||+|.|. |..+-.+++..+. ++.++..+++-.+.+++-++         .-.++..+..+.+.+.. +.||+
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            4557899998754 4445566776665 88999988887777643331         12344444455565554 58998


Q ss_pred             EEEcCCC----------chhHHHHHHhcccCcEEEEEc
Q 022313          248 IIDTASG----------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       248 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      |+--+..          ...++.+.++|+++|.++.-.
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            8754432          234888999999999999764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.96  E-value=0.18  Score=37.70  Aligned_cols=43  Identities=30%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG  225 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g  225 (299)
                      +|-|+|.|.+|...+.-+...|.+|++.++++++.+.+.++.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCC
Confidence            3778999999999999999999999999999999998865544

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.24  Score=36.11  Aligned_cols=92  Identities=13%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCC--CeEEEEeCC--chHHHHHHHhcCCCEEEeCCCHH--H-----------------
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFG--LNVTVLSTS--TSKKEEALSLLGADKFVVSSDLE--Q-----------------  237 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g--~~v~~~~~~--~~~~~~~~~~~g~~~v~~~~~~~--~-----------------  237 (299)
                      ++|.|+|+ |++|..+..+.+...  .+|..++..  -+.+.+..++|....++..++..  .                 
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            36899999 999999999999873  477666543  44555555788887776554421  1                 


Q ss_pred             ---HHHh--cCCccEEEEcCCCchhHHHHHHhcccCcEEEE
Q 022313          238 ---MKAL--GKSLDFIIDTASGDHPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       238 ---~~~~--~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  273 (299)
                         +.++  ...+|+|+.++.|...+.-.+.+++.+-++.+
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaL  122 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  122 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEE
Confidence               1111  14799999999998889999999988876544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.93  E-value=0.069  Score=39.70  Aligned_cols=90  Identities=11%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             EEEEEcCChHHHH-HHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          183 SLGVIGLGGLGHM-AVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       183 ~vlI~G~g~~G~~-a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      +|.|+|+|.+|.. .+...+.. +..++++++++++.+.+.++++...++...+ +.+   ...+|+|+-++........
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~ll---~~~iD~V~I~tp~~~H~~~   78 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYR-DVL---QYGVDAVMIHAATDVHSTL   78 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTT-GGG---GGCCSEEEECSCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHH-Hhc---ccccceecccccccccccc
Confidence            5789999999964 55566555 4477788888888888888888655433221 111   2468898888887665666


Q ss_pred             HHHhcccCcEEEEEcCC
Q 022313          261 YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       261 ~~~~l~~~G~~v~~g~~  277 (299)
                      +..++..+ +=+.+..+
T Consensus        79 ~~~al~~g-k~V~~EKP   94 (167)
T d1xeaa1          79 AAFFLHLG-IPTFVDKP   94 (167)
T ss_dssp             HHHHHHTT-CCEEEESC
T ss_pred             cccccccc-cccccCCC
Confidence            66666654 44555554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.024  Score=43.68  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA  220 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~  220 (299)
                      ++|.|+|+|.+|...++++...|.+|++++++++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            579999999999999999999999999999998876655

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.90  E-value=0.037  Score=45.34  Aligned_cols=93  Identities=17%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC------EEEeCCCHHHHHH--hcCCccE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD------KFVVSSDLEQMKA--LGKSLDF  247 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~------~v~~~~~~~~~~~--~~~~~d~  247 (299)
                      +++++||=+|+|. |..+..+++. |++|+.++.+++-++.++++.   +..      .+.+.+-...-..  ....||.
T Consensus        55 ~~~~~vLD~GcG~-G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGT-GVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTT-SHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCC-cHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            5678898889874 7777788775 899999999998777664332   111      1111111111111  2367999


Q ss_pred             EEEcCCC--------------chhHHHHHHhcccCcEEEE
Q 022313          248 IIDTASG--------------DHPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       248 v~d~~g~--------------~~~~~~~~~~l~~~G~~v~  273 (299)
                      |+.....              ...++.+.+.|+|+|+++.
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            9864321              0157889999999999886

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.90  E-value=0.035  Score=38.98  Aligned_cols=44  Identities=18%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      .+..... .++++|+|+|+|.+|+-.+..++..|.+|.++.+.+.
T Consensus        13 ~~~~l~~-~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          13 LVEELDY-EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHHHCCS-CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HHHHHhh-CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            3344444 7889999999999999999999999999999998753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.86  E-value=0.021  Score=43.26  Aligned_cols=43  Identities=21%  Similarity=0.233  Sum_probs=36.9

Q ss_pred             EEEEE-cCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC
Q 022313          183 SLGVI-GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG  225 (299)
Q Consensus       183 ~vlI~-G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g  225 (299)
                      +|.|+ |+|.+|.+.++.+...|++|++..|++++.+.+.++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            57888 56999999999999999999999999998877755543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.84  E-value=0.17  Score=38.08  Aligned_cols=91  Identities=12%  Similarity=0.111  Sum_probs=58.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHC-CCeEEEE-eCCchHHHHHHHhcCCC---EEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF-GLNVTVL-STSTSKKEEALSLLGAD---KFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~-g~~v~~~-~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      ++.|+|+|.+|...++.++.. +.+++++ +++.++.+.+.++++..   .++  ++.+.+-+ ...+|+|+-++....-
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH--GSYESLLE-DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE--SSHHHHHH-CTTCCEEEECCCGGGH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec--CcHHHhhh-ccccceeeecccchhh
Confidence            578999999999888888776 4577654 66666777776777742   232  23222222 2568999888887665


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +..+..++..+ +=+.+..+
T Consensus        80 ~~~~~~~l~~g-~~v~~EKP   98 (184)
T d1ydwa1          80 VEWAIKAAEKG-KHILLEKP   98 (184)
T ss_dssp             HHHHHHHHTTT-CEEEECSS
T ss_pred             cchhhhhhhcc-ceeecccc
Confidence            66666666654 44445444

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.80  E-value=0.046  Score=45.64  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc----CCCEEE-eCCCHHHHHHhc--CCccEEEEc
Q 022313          180 PGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL----GADKFV-VSSDLEQMKALG--KSLDFIIDT  251 (299)
Q Consensus       180 ~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~----g~~~v~-~~~~~~~~~~~~--~~~d~v~d~  251 (299)
                      ++++|||.|+ |.+|...++.+...|.+|+++++...+...+.+..    +.+.+. +..+.+.+.++.  ..+|+|+.+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~   86 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   86 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence            5799999998 99999999999999999999998765433322222    122222 444555555543  467899988


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      ++.
T Consensus        87 aa~   89 (356)
T d1rkxa_          87 AAQ   89 (356)
T ss_dssp             CSC
T ss_pred             hcc
Confidence            875

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.78  E-value=0.02  Score=45.64  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      ..++|+|+|+|..|++++..+...|.+|+++.+++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46789999999999999999999999999998754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.68  E-value=0.039  Score=42.31  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=60.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCCCEE-EeCCCHHHHHHhcCCccEEEEcC
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGADKF-VVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v-~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      .+++| +||=+|+| .|..+..+++ .|++|++++.+++.++.++   ++.+.+.+ +...+.... ...+.||+|+...
T Consensus        28 ~~~~g-rvLDiGcG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~I~~~~  103 (198)
T d2i6ga1          28 VVAPG-RTLDLGCG-NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-TFDGEYDFILSTV  103 (198)
T ss_dssp             TSCSC-EEEEETCT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-CCCCCEEEEEEES
T ss_pred             cCCCC-cEEEECCC-CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-cccccccEEEEee
Confidence            33444 88889997 6888888776 4899999999988777653   23343321 111111110 1236799998633


Q ss_pred             C-----Cc---hhHHHHHHhcccCcEEEEEc
Q 022313          253 S-----GD---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       253 g-----~~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                      -     ..   ..++.+.++|+++|.++...
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            2     11   25777888999999988764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.63  E-value=0.051  Score=44.68  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC---------CCEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG---------ADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      ...++|||+|+|. |..+-.++++.+. +|.++..+++-.+.+.+-++         .-+++..+..+.+++..+.||+|
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            4558999998754 3445566666554 89999998887776643332         12344444445555556789999


Q ss_pred             EEcCC-----------CchhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTAS-----------GDHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g-----------~~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-...           ....++.+.+.|+++|.++.-.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            75322           1235778899999999998754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.63  E-value=0.044  Score=41.10  Aligned_cols=94  Identities=15%  Similarity=0.231  Sum_probs=62.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch--HHHHHHHhc----CC---------C---------EEEeCCCHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS--KKEEALSLL----GA---------D---------KFVVSSDLEQM  238 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~--~~~~~~~~~----g~---------~---------~v~~~~~~~~~  238 (299)
                      +|.|.|-|-+|+++.+.+...+.+++++....+  ....+. ++    |.         +         .+.+.++++.+
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl-~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLL-KYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHH-HCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhhee-ecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            578999999999999988887888777764422  222222 22    20         0         22233344444


Q ss_pred             HHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          239 KALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       239 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .|-..++|+|+||+|.-...+.+...+..+-+=|.+..+
T Consensus        81 ~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  119 (168)
T d2g82a1          81 PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (168)
T ss_dssp             CTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             cccccCCceeEeccccccchHHhhhhhccccceeeeccc
Confidence            554568999999999877677788888877655555555

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.026  Score=47.58  Aligned_cols=74  Identities=14%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCE--EEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADK--FVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .++-+|||+|+ |.+|...+..+...|.+|+++++.......  .......  ..+..+.+.+.+...++|.|+.+++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh--hhcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence            46788999998 999999999999999999999765433211  1222222  23445555665556889999997753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.53  E-value=0.12  Score=37.56  Aligned_cols=90  Identities=19%  Similarity=0.331  Sum_probs=58.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHH----HHHhc---CCccEEEEcCC
Q 022313          182 KSLGVIG-LGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQ----MKALG---KSLDFIIDTAS  253 (299)
Q Consensus       182 ~~vlI~G-~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~---~~~d~v~d~~g  253 (299)
                      ++|.|+| .|.+|...+..++..|..|.+.+++++...... .-+++.++.......    +.++.   ..=.+++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-LANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH-HTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh-hhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            6799999 699999999999999999999999887666552 345666665444322    22221   33357888877


Q ss_pred             Cchh-HHHHHHhcccCcEEEEE
Q 022313          254 GDHP-FDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       254 ~~~~-~~~~~~~l~~~G~~v~~  274 (299)
                      .... .+...+.+  ..+++-.
T Consensus        89 vk~~~~~~~~~~~--~~~~v~~  108 (152)
T d2pv7a2          89 VKREPLAKMLEVH--TGAVLGL  108 (152)
T ss_dssp             CCHHHHHHHHHHC--SSEEEEE
T ss_pred             cCHHHHHHHHHHc--cCCEEEe
Confidence            6543 33333333  2355543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.52  E-value=0.023  Score=43.98  Aligned_cols=36  Identities=31%  Similarity=0.557  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      .+++|.|+|.|.+|...++.++.+|.+|+++++...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCccc
Confidence            568999999999999999999999999999997643

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.52  E-value=0.0071  Score=44.70  Aligned_cols=83  Identities=12%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             EEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHHHHHh
Q 022313          185 GVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSL  264 (299)
Q Consensus       185 lI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  264 (299)
                      -++|.|.+|...+..++..+....+..|+.++.+.+.++.+.. ..+..      +..+..|+||-|+.... +..+.+.
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~------~~~~~~DiVil~v~d~~-i~~v~~~   74 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK-AATLE------KHPELNGVVFVIVPDRY-IKTVANH   74 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC-CCSSC------CCCC---CEEECSCTTT-HHHHHTT
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc-ccchh------hhhccCcEEEEeccchh-hhHHHhh
Confidence            3679999999888766543334468899999999997666542 22211      34467899999998876 7888888


Q ss_pred             cccCcE-EEEEc
Q 022313          265 LKVAGV-YVLVG  275 (299)
Q Consensus       265 l~~~G~-~v~~g  275 (299)
                      ++..++ ++.+.
T Consensus        75 l~~~~~ivi~~s   86 (153)
T d2i76a2          75 LNLGDAVLVHCS   86 (153)
T ss_dssp             TCCSSCCEEECC
T ss_pred             hcccceeeeecc
Confidence            875444 44543

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.51  E-value=0.08  Score=42.27  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh----cCCCEEEeC----C--C-HHHHHHh-------c
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKK-EEALSL----LGADKFVVS----S--D-LEQMKAL-------G  242 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~-~~~~~~----~g~~~v~~~----~--~-~~~~~~~-------~  242 (299)
                      +.||.|+ +++|.+.++.+...|++|++++++.++. +.+.++    .+.......    .  + .+.+.++       -
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF   82 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence            4577787 8999999999999999999999886543 322222    233332211    1  1 1222221       2


Q ss_pred             CCccEEEEcCCC
Q 022313          243 KSLDFIIDTASG  254 (299)
Q Consensus       243 ~~~d~v~d~~g~  254 (299)
                      ++.|++++++|.
T Consensus        83 g~iDilvnnAG~   94 (266)
T d1mxha_          83 GRCDVLVNNASA   94 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            689999999983

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.45  E-value=0.037  Score=38.69  Aligned_cols=37  Identities=35%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      +..++++|+|+|.+|.-+++.+..+|.+|+++.+.+.
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            3447899999999999999999999999999987754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.059  Score=44.53  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH--HHhcCC-C--EEEeCCCHHHHHHhcCC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA--LSLLGA-D--KFVVSSDLEQMKALGKS  244 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~--~~~~g~-~--~v~~~~~~~~~~~~~~~  244 (299)
                      |+.....+.++++||-+|+| .|..++.+|+ .|+ +|++++.++.-....  .++.+. +  .++..+ ...+......
T Consensus        26 ai~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~-~~~l~~~~~~  102 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK-IEEVHLPVEK  102 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC-TTTSCCSCSC
T ss_pred             HHHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee-HHHhcCcccc
Confidence            45555455789999999987 4666666666 476 899999887543211  123332 2  223222 1111112368


Q ss_pred             ccEEEEcCCC-----c----hhHHHHHHhcccCcEEEE
Q 022313          245 LDFIIDTASG-----D----HPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       245 ~d~v~d~~g~-----~----~~~~~~~~~l~~~G~~v~  273 (299)
                      +|+|+-..-+     .    ......-+.|+|+|+++-
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            9999852221     1    112223468999998863

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.36  E-value=0.11  Score=43.24  Aligned_cols=38  Identities=13%  Similarity=0.007  Sum_probs=31.2

Q ss_pred             CCEEEEEcCC---hHHHHHHHHHHHCCCeEEEEeCCchHHH
Q 022313          181 GKSLGVIGLG---GLGHMAVKFGKAFGLNVTVLSTSTSKKE  218 (299)
Q Consensus       181 g~~vlI~G~g---~~G~~a~~~a~~~g~~v~~~~~~~~~~~  218 (299)
                      ++..||.|+|   ++|++.++.+...|++|++..+......
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence            5677888953   8999999999999999999988766443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.35  E-value=0.036  Score=38.85  Aligned_cols=36  Identities=17%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      +..++|+|+|+|.+|.-++..++.+|.+|+++.+.+
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCCCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            456899999999999999999999999999999864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.32  E-value=0.044  Score=38.66  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      ++++++++|+|+|.+|.-++..++..|.+|+++.+.+.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            36779999999999999999999999999999988753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.25  E-value=0.056  Score=40.89  Aligned_cols=83  Identities=14%  Similarity=0.026  Sum_probs=53.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhcCCC----EEEe---CCCHHHHHHhcCCccEEEEcCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK--KEEALSLLGAD----KFVV---SSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~--~~~~~~~~g~~----~v~~---~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      +|.|+|+|..|.+.+..+...|.+|.+..|..+.  .+.+. +-...    ..+.   ....+.+.+.....|+|+.++.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-AGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-TTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh-hhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            5889999999999999998889999999885332  33331 11100    0000   0001234445578999999999


Q ss_pred             CchhHHHHHHhccc
Q 022313          254 GDHPFDAYMSLLKV  267 (299)
Q Consensus       254 ~~~~~~~~~~~l~~  267 (299)
                      ... ++..++.+.+
T Consensus        81 s~~-~~~~~~~l~~   93 (180)
T d1txga2          81 TDG-VLPVMSRILP   93 (180)
T ss_dssp             GGG-HHHHHHHHTT
T ss_pred             hhh-hHHHHHhhcc
Confidence            876 6666654444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=94.20  E-value=0.038  Score=43.31  Aligned_cols=94  Identities=12%  Similarity=0.074  Sum_probs=61.2

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHH---CCCeEEEEeCCchHHHHHHHhc---CCC---EEEeCCCHHHHHHhcCCccEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKA---FGLNVTVLSTSTSKKEEALSLL---GAD---KFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~---~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      ++++.+||=+|+|. |..+..+++.   .+++|+.++.+++-++.+.+++   +..   +....+.   ....-..+|++
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~~~~~~~~d~i  112 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMV  112 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---TTCCCCSEEEE
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---hccccccceee
Confidence            47899999999864 6666666664   4779999999999888875443   211   1121111   00112456777


Q ss_pred             EEcCCC--------chhHHHHHHhcccCcEEEEEc
Q 022313          249 IDTASG--------DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       249 ~d~~g~--------~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      +-...-        ...++.+.+.|+|+|.++..-
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            654331        135888899999999999764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.16  E-value=0.037  Score=43.64  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      +..++|+|+|+|..|+.++..+...|.+|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45568999999999999999999999999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.13  E-value=0.061  Score=37.94  Aligned_cols=36  Identities=28%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .++++|+|+|+|.+|+-+++.+...|.+|+++.+.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            567899999999999999999999999999998764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.12  E-value=0.035  Score=43.78  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      +..++|+|+|+|+.|+.++..++..|.+|+++..+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            6779999999999999999999999999999987653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.0093  Score=49.56  Aligned_cols=69  Identities=23%  Similarity=0.173  Sum_probs=44.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC-chHHHHHHHhc-CC--CEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS-TSKKEEALSLL-GA--DKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~-~~~~~~~~~~~-g~--~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      ++|||.|+ |.+|...+..+...|.+|+++++. ..+.+.+ ... ..  -.+.+.+.   ...+-.++|+||.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~-~~~~~~~~~d~~~~~~---~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV-EHWIGHENFELINHDV---VEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT-GGGTTCTTEEEEECCT---TSCCCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH-HHhcCCCceEEEehHH---HHHHHcCCCEEEECccc
Confidence            67999998 999999999998899999998752 2222222 121 11  12333221   22233579999998763

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.85  E-value=0.27  Score=34.56  Aligned_cols=90  Identities=10%  Similarity=0.062  Sum_probs=62.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc-CCccEEEEcCCCch---h
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG-KSLDFIIDTASGDH---P  257 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~v~d~~g~~~---~  257 (299)
                      .++|.|.|.+|+..++.++  +..+.+++.++++.+.+ +..|...+. +..+++.+.+.. ..++.++-++....   .
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~-~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKV-LRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHH-HHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHH-HhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            4788899999998888764  45788889888888887 566764443 455567777765 78999998887654   1


Q ss_pred             HHHHHHhcccCcEEEEEc
Q 022313          258 FDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g  275 (299)
                      .....+.+.|..+++..-
T Consensus        79 ~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          79 CILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHCCCceEEEEE
Confidence            333445666776665553

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=93.84  E-value=0.045  Score=43.69  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CCC-EE--EeCCCHHHHHHhcCCccEEEEc
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GAD-KF--VVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      ++++++||=+|+|. |..+..+++.-..+|+.++.+++.++.+.++.   +.. .+  +..+.........+.||+|+..
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            47899999999875 55566777764458999999999888875443   321 21  1111100000123679999864


Q ss_pred             CCCc----------hhHHHHHHhcccCcEEEEE
Q 022313          252 ASGD----------HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       252 ~g~~----------~~~~~~~~~l~~~G~~v~~  274 (299)
                      ..-.          ..+..+.+.|+++|.++..
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            4321          2356677899999998764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.82  E-value=0.16  Score=37.44  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=57.2

Q ss_pred             CEEEEEcCChHHH-HHHHHHHHCCC-eEEEEe-CCch-HHHHHHHhcCCCEEEeCCCHHHHHHh--cCCccEEEEcCCCc
Q 022313          182 KSLGVIGLGGLGH-MAVKFGKAFGL-NVTVLS-TSTS-KKEEALSLLGADKFVVSSDLEQMKAL--GKSLDFIIDTASGD  255 (299)
Q Consensus       182 ~~vlI~G~g~~G~-~a~~~a~~~g~-~v~~~~-~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~--~~~~d~v~d~~g~~  255 (299)
                      =++.|+|+|.+|. ..+++++.... +++++. ++.+ +.....+++|....  ....+.+.+.  -.++|+||.++...
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~--~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccc--ccceeeeeecccccccCEEEEcCCch
Confidence            4689999999987 46678776654 666664 4433 22233367886543  2222333332  15799999998754


Q ss_pred             hhHH--HHHHhcccCcEEEEEcCC
Q 022313          256 HPFD--AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       256 ~~~~--~~~~~l~~~G~~v~~g~~  277 (299)
                      ....  ...+.++.|-.+++....
T Consensus        83 ~h~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          83 AHVQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             hHHHhHHHHHHHHcCCEEEEcccc
Confidence            3233  345567777777777544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=93.80  E-value=0.13  Score=41.07  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=67.4

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEe--CCCHHHHHHhcCCccEEE
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVV--SSDLEQMKALGKSLDFII  249 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~d~v~  249 (299)
                      +..... .++.+||=+|+|. |..+..++.....+|++++.+++-++.+++++.....++  ..+.+.+.-..+.||+|+
T Consensus        86 l~~l~~-~~~~~vLD~GcG~-G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~  163 (254)
T d1xtpa_          86 IASLPG-HGTSRALDCGAGI-GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV  163 (254)
T ss_dssp             HHTSTT-CCCSEEEEETCTT-THHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEE
T ss_pred             HhhCCC-CCCCeEEEecccC-ChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEE
Confidence            333433 6778888889874 788888887766799999999998888876665322221  111111111136799997


Q ss_pred             EcCCC-----c---hhHHHHHHhcccCcEEEEEc
Q 022313          250 DTASG-----D---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       250 d~~g~-----~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                      -.---     .   ..++.+.+.|+++|.++..-
T Consensus       164 ~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            64331     1   24677889999999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.79  E-value=0.24  Score=32.62  Aligned_cols=68  Identities=22%  Similarity=0.316  Sum_probs=48.2

Q ss_pred             CEEEEEcCChHHHHH-HHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          182 KSLGVIGLGGLGHMA-VKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a-~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      -+|-++|.|++|..+ +++++..|+.|...++.+...-..+++.|+.... .++.+.+    .+.|+|+-..+-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~-gh~~~~i----~~~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFV-PHSADNW----YDPDLVIKTPAV   70 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEES-SCCTTSC----CCCSEEEECTTC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEe-eeccccc----CCCCEEEEecCc
Confidence            357778988888755 6888899999999999876555445899976443 3333222    568888876653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.046  Score=42.73  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC---CC--EEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG---AD--KFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g---~~--~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ..++.+||=+|+|. |..+..+++..+.+|++++.+++-++.+++.+.   ..  .++..+ ...+....+.||+|+..-
T Consensus        58 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d-~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          58 KTGTSCALDCGAGI-GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG-LQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             CCCCSEEEEETCTT-THHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECC-GGGCCCCSSCEEEEEEES
T ss_pred             CCCCCEEEEeccCC-CHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccc-cccccccccccccccccc
Confidence            36778898899874 777777777666799999999998888865543   11  223222 112211236799998733


Q ss_pred             C-----Cc---hhHHHHHHhcccCcEEEEEc
Q 022313          253 S-----GD---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       253 g-----~~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .     .+   ..+..+.+.|+++|.++..-
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            2     22   24777889999999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.72  E-value=0.062  Score=37.65  Aligned_cols=45  Identities=27%  Similarity=0.258  Sum_probs=36.1

Q ss_pred             HHHHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          167 TVYTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       167 ta~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      +.+.++.. .  +..++++|+|+|.+|+-.++.++.+|.+|+++.+.+
T Consensus        11 ~s~~~l~l-~--~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          11 DSTGALDF-Q--NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             EHHHHTSC-S--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             chhHhhCc-c--cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            44555532 2  445889999999999999999999999999998774

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.69  E-value=0.04  Score=43.76  Aligned_cols=91  Identities=18%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhc---CC-CEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLL---GA-DKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .++++||=+|+|. |..+..+++ .|.+|+.++.+++-++.++++.   +. -.++.. +.... ...+.||+|+...+.
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~-d~~~~-~~~~~fD~i~~~~~~  111 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ-DISNL-NINRKFDLITCCLDS  111 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC-CGGGC-CCSCCEEEEEECTTG
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeecc-chhhh-cccccccccceeeee
Confidence            4567899899873 666666666 4789999999998777764432   32 233322 22111 124689999864331


Q ss_pred             ------c----hhHHHHHHhcccCcEEEE
Q 022313          255 ------D----HPFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       255 ------~----~~~~~~~~~l~~~G~~v~  273 (299)
                            .    ..++.+.+.|+++|.++.
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence                  1    146778899999999884

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.66  E-value=0.34  Score=37.86  Aligned_cols=98  Identities=22%  Similarity=0.221  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHH---HhcCCC---EEEeCCCHHHHHHh------cCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEAL---SLLGAD---KFVVSSDLEQMKAL------GKS  244 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~------~~~  244 (299)
                      .+.++||-+|.+ +|+.++.+|+..  +.+++.+..+++..+.+.   ++.|.+   .++..+..+.++++      .+.
T Consensus        58 ~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          58 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             cCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            456789999874 477777888765  469999999988766653   334532   23344445556655      357


Q ss_pred             ccEEEEcCCCch---hHHHHHHhcccCcEEEEEcCC
Q 022313          245 LDFIIDTASGDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       245 ~d~v~d~~g~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ||+||--.....   .++.+++.|+++|.++.=-..
T Consensus       137 fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         137 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             eeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence            999987655432   478899999999998865444

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.65  E-value=0.048  Score=44.58  Aligned_cols=36  Identities=31%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      ...++|+|+|+|..|+.++..+...|.+|+++...+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            566799999999999999999999999999998763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.057  Score=37.66  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      -.++++|+|+|.+|+-+++.++.+|.+|+++.+.+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            34689999999999999999999999999998875

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.093  Score=39.09  Aligned_cols=94  Identities=11%  Similarity=0.178  Sum_probs=60.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHH--hc----C---CC---------------EEEeCCCHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALS--LL----G---AD---------------KFVVSSDLEQ  237 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~--~~----g---~~---------------~v~~~~~~~~  237 (299)
                      +|.|.|-|-+|+++.+.+.... .+++++-... ..+.+..  ++    |   .+               .+.+..+++.
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~-~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL-DADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC-CHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            4788899999999999888664 4776665432 2232211  11    2   00               1223333444


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.|-..++|+|+||+|--...+.+...+..+-+=|.+..+
T Consensus        82 i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP  121 (166)
T d1gado1          82 LKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP  121 (166)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             CCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeecc
Confidence            4444458999999999877677787888878665666555

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.59  E-value=0.064  Score=37.77  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      ..++++|+|+|.+|.-.++++..+|.+|+++.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            34789999999999999999999999999998764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.58  E-value=0.069  Score=38.25  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      ++++++++|+|+|.+|.-++..++..|.+|.++.+.+.
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            36779999999999999999999999999999987643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.2  Score=39.57  Aligned_cols=34  Identities=32%  Similarity=0.574  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      +..+|+|+|+|++|-.++..+.+.|. ++++++.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            34789999999999999999999998 78887744

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.43  E-value=0.11  Score=41.58  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHH------HHHH--HhcCCCEEE-eCCCHHHHHHhcCCccEEEE
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKK------EEAL--SLLGADKFV-VSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~------~~~~--~~~g~~~v~-~~~~~~~~~~~~~~~d~v~d  250 (299)
                      -++|||+|+ |.+|...+..+...|.+|++++|+....      ..+.  ...+.+.+. +..+.....+...+.+.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            367999998 9999999999999999999999875432      1111  122333222 33344444444467888888


Q ss_pred             cCCCc
Q 022313          251 TASGD  255 (299)
Q Consensus       251 ~~g~~  255 (299)
                      +.+..
T Consensus        83 ~~~~~   87 (307)
T d1qyca_          83 TVGSL   87 (307)
T ss_dssp             CCCGG
T ss_pred             ccccc
Confidence            77753

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.42  E-value=0.2  Score=40.19  Aligned_cols=32  Identities=22%  Similarity=0.102  Sum_probs=26.6

Q ss_pred             EEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          184 LGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       184 vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      +||.|+ +++|.+.++.+...|++|++.++..+
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            466687 89999999999999999998776543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.054  Score=44.23  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=31.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      ++..+|+|+|+|.-|+.|+..+...|.+|+++..+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            56778999999999999999999999999999765

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.14  Score=43.86  Aligned_cols=105  Identities=13%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             HHHhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHh----------cC----CCEE-EeC
Q 022313          169 YTPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSL----------LG----ADKF-VVS  232 (299)
Q Consensus       169 ~~al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~----------~g----~~~v-~~~  232 (299)
                      ...++... ++++++++=+|+| .|..+.++|+..++ +++.++.++...+.+.+.          ++    .... +..
T Consensus       206 ~~Il~~l~-Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         206 SDVYQQCQ-LKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHhC-CCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            44555554 4999987778887 48899999999887 899999998766555221          11    1122 111


Q ss_pred             --CCHHHHHHhcCCccEEEEcCC--Cc---hhHHHHHHhcccCcEEEEEc
Q 022313          233 --SDLEQMKALGKSLDFIIDTAS--GD---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       233 --~~~~~~~~~~~~~d~v~d~~g--~~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                        .+.+.....-..+|+++-...  .+   ..+...++.|++||+++..-
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             chhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence              112333444456888875322  11   23667888999999999864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.37  E-value=0.18  Score=41.88  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHH--HHHHhc-CCCEEE-eCCC-HHHHHHhcCCccEEEEcC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKE--EALSLL-GADKFV-VSSD-LEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~--~~~~~~-g~~~v~-~~~~-~~~~~~~~~~~d~v~d~~  252 (299)
                      ++.++|+|+|+ |.+|...+..+...|.+|++++|+..+..  .+ ... +++.+. +..+ .+.+..+-.+.|.++...
T Consensus         1 ~~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~-~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~   79 (350)
T d1xgka_           1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL-QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT   79 (350)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHH-HTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhh-cccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence            35688999998 99999999999999999999999766443  23 233 333322 2223 344555667888887755


Q ss_pred             C
Q 022313          253 S  253 (299)
Q Consensus       253 g  253 (299)
                      .
T Consensus        80 ~   80 (350)
T d1xgka_          80 T   80 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.32  E-value=0.11  Score=38.68  Aligned_cols=94  Identities=17%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEeCC---chHHHHHHHhc----C---CC---------------EEEeCCCHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTS---TSKKEEALSLL----G---AD---------------KFVVSSDLE  236 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~---~~~~~~~~~~~----g---~~---------------~v~~~~~~~  236 (299)
                      +|.|.|-|-+|+++.+.+.... .+++++-..   .+....+. ++    |   .+               .+.+.++++
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLL-KYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhh-hcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            5788999999999999887553 477666532   23444443 22    2   10               122333444


Q ss_pred             HHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          237 QMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       237 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+.|-..++|+|+||+|--...+.+...+..+-+-|.+..+
T Consensus        81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  121 (166)
T d2b4ro1          81 QIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  121 (166)
T ss_dssp             GCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             HccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecc
Confidence            44444468999999999877677787888877655666555

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.31  E-value=0.095  Score=40.31  Aligned_cols=71  Identities=17%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHH---------------hcCCccE
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKA---------------LGKSLDF  247 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---------------~~~~~d~  247 (299)
                      +|.|+|.|-+|+..+..+...|.+|++++.++++.+.+.  -|..++......+.+..               .....|+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln--~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~   79 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN--QGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV   79 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH--TTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc--ccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence            478999999999988888889999999999988888772  23332222222222211               1136799


Q ss_pred             EEEcCCCc
Q 022313          248 IIDTASGD  255 (299)
Q Consensus       248 v~d~~g~~  255 (299)
                      +|-|++.+
T Consensus        80 i~i~VpTP   87 (202)
T d1mv8a2          80 SFICVGTP   87 (202)
T ss_dssp             EEECCCCC
T ss_pred             EEEecCcc
Confidence            99999864

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=93.29  E-value=0.27  Score=40.97  Aligned_cols=109  Identities=14%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             hhccCCCCCCEEEEEcCChHHHHHHHHHH-HCCC-eEEEEeCCchHHHHHHHhcCC---CEEEeCCCHHHHHHhcCCccE
Q 022313          173 MRHKMNQPGKSLGVIGLGGLGHMAVKFGK-AFGL-NVTVLSTSTSKKEEALSLLGA---DKFVVSSDLEQMKALGKSLDF  247 (299)
Q Consensus       173 ~~~~~~~~g~~vlI~G~g~~G~~a~~~a~-~~g~-~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~  247 (299)
                      +...+ +..+++.|+|+|..+..-++... ..+. +|.+.++++++.+.+.+++..   -.+....   .+++...+.|+
T Consensus       121 ~~LA~-~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~---s~~eav~~ADI  196 (340)
T d1x7da_         121 QALAR-PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRAS---SVAEAVKGVDI  196 (340)
T ss_dssp             HHHSC-TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECS---SHHHHHTTCSE
T ss_pred             HHhhc-cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecC---CHHHHHhcCCc
Confidence            33444 56688999999988877776554 5566 899999998887776655532   1232233   23445578999


Q ss_pred             EEEcCCCc---hhHHHHHHhcccCcEEEEEcCC--CceeeChhhh
Q 022313          248 IIDTASGD---HPFDAYMSLLKVAGVYVLVGFP--SKVKFSPASL  287 (299)
Q Consensus       248 v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~~l  287 (299)
                      |+-++..+   +.+.  .+.++++-.+..+|..  ....++..-+
T Consensus       197 i~t~Tas~s~~Pv~~--~~~l~pG~hI~aiGs~~p~~~Eld~~~l  239 (340)
T d1x7da_         197 ITTVTADKAYATIIT--PDMLEPGMHLNAVGGDCPGKTELHADVL  239 (340)
T ss_dssp             EEECCCCSSEEEEEC--GGGCCTTCEEEECSCCBTTBEEECHHHH
T ss_pred             eeeccccCCCCcccc--hhhcCCCCEEeecccchhhhhccCHHHH
Confidence            99877543   2122  2578999999999987  5566666533

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.25  E-value=0.13  Score=42.23  Aligned_cols=71  Identities=23%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC--ch---HHHHHHHhcCCCEEE--eCCCHHHHHHhc--CCccEEEEcC
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS--TS---KKEEALSLLGADKFV--VSSDLEQMKALG--KSLDFIIDTA  252 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~--~~---~~~~~~~~~g~~~v~--~~~~~~~~~~~~--~~~d~v~d~~  252 (299)
                      +|||.|+ |.+|...+..+...|.+|+++++-  ..   +...+ +..+.-+++  +..+.+.+.++-  .++|+||.++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~-~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWL-SSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHH-HTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHh-hccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            6999998 999999999998889999998632  11   22233 333433333  334455555542  3579999988


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      +.
T Consensus        81 a~   82 (338)
T d1orra_          81 GQ   82 (338)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.20  E-value=0.063  Score=37.82  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      ..++++|+|+|.+|+-.++.++.+|.+|+++.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            3467999999999999999999999999999865

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.18  E-value=0.15  Score=37.20  Aligned_cols=95  Identities=17%  Similarity=0.189  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhc-------CCCEEEeCCCHHHHHHhcCCccEEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLL-------GADKFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ..+.+|.|+|+|.+|...+..+...+.  ++.+++..+++.+-...++       +....+...+.    +...+.|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----HHhccceeEE
Confidence            466789999999999998888887775  7888888876632211112       11111222221    2236789999


Q ss_pred             EcCCCch---------------hHH---HHHHhcccCcEEEEEcCC
Q 022313          250 DTASGDH---------------PFD---AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~~---------------~~~---~~~~~l~~~G~~v~~g~~  277 (299)
                      -++|.+.               .++   ..+....|++.++.+..+
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP  125 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence            9888531               111   122344577888887665

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.16  Score=42.02  Aligned_cols=71  Identities=18%  Similarity=0.074  Sum_probs=47.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC----chHHHHHHHhc---CCCEE-EeCCCHHHHHHh--cCCccEEEEc
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS----TSKKEEALSLL---GADKF-VVSSDLEQMKAL--GKSLDFIIDT  251 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~----~~~~~~~~~~~---g~~~v-~~~~~~~~~~~~--~~~~d~v~d~  251 (299)
                      +|||+|+ |.+|...+..+...|.+|+++++.    ....... +.+   +.+.+ .|..+.+.+.+.  ..++|+||.+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl   80 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI-ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHH-HHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH-HhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence            5899998 999999999999999999998752    2222222 122   23222 244455655554  2589999998


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      ++.
T Consensus        81 Aa~   83 (338)
T d1udca_          81 AGL   83 (338)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            763

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.03  E-value=0.079  Score=44.10  Aligned_cols=98  Identities=23%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH---HHhcCC-C--EEEeCCCHHHHHHhcC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA---LSLLGA-D--KFVVSSDLEQMKALGK  243 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~---~~~~g~-~--~v~~~~~~~~~~~~~~  243 (299)
                      ++.......++++||-+|+|. |.++..+|+ .|+ +|++++.++. .+.+   .++.+. +  .++..+ ...+.....
T Consensus        29 aI~~~~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~~~~~~~i~~i~~~-~~~l~~~~~  104 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGK-LEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESC-TTTSCCSSS
T ss_pred             HHHhccccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCHH-HHHHHHHHHHhCccccceEEEee-hhhccCccc
Confidence            343333336889999999874 666654444 576 8999987752 2222   233342 2  222222 111111236


Q ss_pred             CccEEEEcCCC------c---hhHHHHHHhcccCcEEE
Q 022313          244 SLDFIIDTASG------D---HPFDAYMSLLKVAGVYV  272 (299)
Q Consensus       244 ~~d~v~d~~g~------~---~~~~~~~~~l~~~G~~v  272 (299)
                      .+|+|+...-.      .   ..+.+.-+.|+|+|+++
T Consensus       105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            79998763221      1   12444457899999885

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.02  E-value=0.056  Score=42.54  Aligned_cols=36  Identities=36%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK  216 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~  216 (299)
                      ++++||.|+ +++|.+.++.+...|++|++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            367899988 899999999999999999999988654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.98  E-value=0.077  Score=36.83  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      ..++++|+|+|.+|.-+++.++..|.+|+++.+.+
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            34789999999999999999999999999998764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.95  E-value=0.34  Score=37.03  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEE
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      +..... -.|++||=+|+|. |..++.+++ .|+ +|+.++.+++..+.+.+....-.+++.+    +.++.+.||+|+-
T Consensus        41 ~~~~~d-l~Gk~VLDlGcGt-G~l~i~a~~-~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D----~~~l~~~fD~Vi~  113 (197)
T d1ne2a_          41 IYNDGN-IGGRSVIDAGTGN-GILACGSYL-LGAESVTAFDIDPDAIETAKRNCGGVNFMVAD----VSEISGKYDTWIM  113 (197)
T ss_dssp             HHHHTS-SBTSEEEEETCTT-CHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCTTSEEEECC----GGGCCCCEEEEEE
T ss_pred             HHHcCC-CCCCEEEEeCCCC-cHHHHHHHH-cCCCcccccccCHHHHHHHHHccccccEEEEe----hhhcCCcceEEEe
Confidence            344555 5789999998864 444444444 565 7999999998888886656544555443    2345688999987


Q ss_pred             cCC
Q 022313          251 TAS  253 (299)
Q Consensus       251 ~~g  253 (299)
                      +..
T Consensus       114 NPP  116 (197)
T d1ne2a_         114 NPP  116 (197)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=92.95  E-value=0.12  Score=40.28  Aligned_cols=92  Identities=18%  Similarity=0.150  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCC-CEEEeCCCHHHHHHhcCCccEEEEcC-----
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGA-DKFVVSSDLEQMKALGKSLDFIIDTA-----  252 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~v~d~~-----  252 (299)
                      .++++||=+|+|. |..+..+++ .|.+|++++.+++..+.+++++.- ..++..+ .+.. ...+.||+|+-.-     
T Consensus        19 ~~~~~VLDiGcG~-G~~~~~l~~-~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~~~~-~~~~~fD~I~~~~vleh~   94 (225)
T d2p7ia1          19 FRPGNLLELGSFK-GDFTSRLQE-HFNDITCVEASEEAISHAQGRLKDGITYIHSR-FEDA-QLPRRYDNIVLTHVLEHI   94 (225)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSCSCEEEEESC-GGGC-CCSSCEEEEEEESCGGGC
T ss_pred             CCCCcEEEEeCCC-cHHHHHHHH-cCCeEEEEeCcHHHhhhhhccccccccccccc-cccc-ccccccccccccceeEec
Confidence            4566788899864 666666654 578999999999999888666552 2333322 1111 1246799997422     


Q ss_pred             CCch-hHHHHH-HhcccCcEEEEE
Q 022313          253 SGDH-PFDAYM-SLLKVAGVYVLV  274 (299)
Q Consensus       253 g~~~-~~~~~~-~~l~~~G~~v~~  274 (299)
                      ..+. .+..+. ++|+++|.++..
T Consensus        95 ~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          95 DDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             SSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCceEEEE
Confidence            1222 244555 679999998864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.95  E-value=0.25  Score=40.82  Aligned_cols=100  Identities=14%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHH-CCC-eEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKA-FGL-NVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~-~g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      +..+++.|+|+|..+..-++.+.. ... +|.+..+++++.+.+.+++   +.....+.  .    +...+.|+|+-++.
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~--~----~a~~~aDiV~taT~  196 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP--A----EEASRCDVLVTTTP  196 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC--H----HHHTSSSEEEECCC
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch--h----hhhccccEEEEecc
Confidence            556789999999988777776664 444 8999999988876664443   34333321  1    22367999999888


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC--CceeeChh
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP--SKVKFSPA  285 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~--~~~~~~~~  285 (299)
                      ....+ --.+.++++-.+..+|..  ....++..
T Consensus       197 s~~P~-~~~~~l~~G~hv~~iGs~~p~~~Eld~~  229 (320)
T d1omoa_         197 SRKPV-VKAEWVEEGTHINAIGADGPGKQELDVE  229 (320)
T ss_dssp             CSSCC-BCGGGCCTTCEEEECSCCSTTCCCBCHH
T ss_pred             Ccccc-cchhhcCCCCeEeecCCccccccccCHH
Confidence            65421 123578999999999987  44455544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.25  Score=38.48  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHH---HhcCCC---EEEeCCCHHHHHHh-----cCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEAL---SLLGAD---KFVVSSDLEQMKAL-----GKSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~-----~~~~  245 (299)
                      .+.++||-+|.+ .|+.++.+|+.+  +.+++.++.+++..+.++   ++.|..   ++...+..+.+.++     .+.|
T Consensus        58 ~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          58 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            566889999975 366777777765  469999999988766653   334532   23334434444443     3579


Q ss_pred             cEEEEcCCCch---hHHHHHHhcccCcEEEEEcCC
Q 022313          246 DFIIDTASGDH---PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       246 d~v~d~~g~~~---~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+||--..-..   .++.+++.|++||.++.=...
T Consensus       137 D~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         137 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            99987665433   377899999999998875544

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.92  E-value=0.15  Score=38.01  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=59.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHC---CCeEEEEeCC--chHHHHHHHhc----CC---C---------------EEEeCCCH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF---GLNVTVLSTS--TSKKEEALSLL----GA---D---------------KFVVSSDL  235 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~---g~~v~~~~~~--~~~~~~~~~~~----g~---~---------------~v~~~~~~  235 (299)
                      +|.|.|-|-+|+.+.+.+...   ..+|+.+-..  .+....+. ++    |.   +               ++.+.+++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLl-kyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLL-KYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHH-HCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHH-hccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999999999999987643   3577666433  22233332 22    21   0               12233334


Q ss_pred             HHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          236 EQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       236 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.+.|-.-++|+|+||+|--.....+...+..+-+-+.+..+
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP  122 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecc
Confidence            444443457999999999876677888888877655555555

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.28  Score=36.02  Aligned_cols=88  Identities=25%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             EEEEEcCChHHHH-HHHHHHHC-CCeEE-EEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHH
Q 022313          183 SLGVIGLGGLGHM-AVKFGKAF-GLNVT-VLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFD  259 (299)
Q Consensus       183 ~vlI~G~g~~G~~-a~~~a~~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  259 (299)
                      +|.|+|.|.+|.- .+...+.. +.+++ +.++++++.+.+.++++...   .++.+.   +...+|+|+-++.......
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~---l~~~~D~V~I~tp~~~h~~   76 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY---ADSLSS---LAASCDAVFVHSSTASHFD   76 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB---CSSHHH---HHTTCSEEEECSCTTHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc---cccchh---hhhhcccccccccchhccc
Confidence            5789999999864 56666654 55655 44577777777767887642   222222   2256888888887665455


Q ss_pred             HHHHhcccCcEEEEEcCC
Q 022313          260 AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       260 ~~~~~l~~~G~~v~~g~~  277 (299)
                      .+..+++.+ +=+.+..+
T Consensus        77 ~~~~al~~g-k~V~~EKP   93 (164)
T d1tlta1          77 VVSTLLNAG-VHVCVDKP   93 (164)
T ss_dssp             HHHHHHHTT-CEEEEESS
T ss_pred             ccccccccc-ceeecccc
Confidence            555555554 33444444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.08  Score=37.37  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=31.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .++++|+|+|.+|+-.+..++.+|.+|+++.+.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            3789999999999999999999999999999874

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.86  E-value=0.12  Score=41.32  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=28.8

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      +|||+|+ |.+|...+..++..|.+|+.+++.+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            5899998 9999999999999999999998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.84  E-value=0.083  Score=37.39  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      +..++++|+|+|.+|+-.++..+.+|.+|+++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            456899999999999999999999999999998764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.83  E-value=0.058  Score=38.06  Aligned_cols=37  Identities=30%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      +..++++|+|+|.+|+-.++..+.+|.+|+++.+++.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            4457899999999999999999999999999988753

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.78  E-value=0.26  Score=40.78  Aligned_cols=98  Identities=26%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHH---hcCCccE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKA---LGKSLDF  247 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~---~~~~~d~  247 (299)
                      +++|++||=.++|. |..++.+|+. |+ +|+.++.++...+.+.+.   .|.+   +++..+-.+.+..   ..+.||+
T Consensus       143 ~~~g~~VLDl~~g~-G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         143 VQPGDRVLDVFTYT-GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CCTTCEEEETTCTT-THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeeecccCcc-cchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            47899998876632 3333444443 66 899999999887776433   3432   3333333333332   3478999


Q ss_pred             EEEcCCC---------------chhHHHHHHhcccCcEEEEEcCC
Q 022313          248 IIDTASG---------------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       248 v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      |+-....               ...+..++++|+++|.++...-.
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9864332               11366778899999999887544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.76  E-value=0.11  Score=37.87  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=31.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA  220 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~  220 (299)
                      +|-|+|.|.+|...+.-+...|..+++..+.+.+....
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~   39 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE   39 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH
Confidence            57889999999999999999999999888776655443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.66  E-value=0.071  Score=44.13  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      +.++|+|+|+|..|+.++..+...|.+|.++..++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            35789999999999999999998899999998774

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.35  Score=36.55  Aligned_cols=36  Identities=28%  Similarity=0.527  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      -.+.+|.|+|.|.+|...++.++.+|.+|+..++..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            367899999999999999999999999999998764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.65  E-value=0.083  Score=42.52  Aligned_cols=97  Identities=9%  Similarity=-0.020  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC---EEEeCCCHHHHHHhcCCccEEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD---KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      .+++|++||-.++|. |..++.+|+.-.++|++++.+++..+.+.+.   .+.+   .+++.+..+..  ....+|.|+-
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--~~~~~D~Ii~  180 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENIADRILM  180 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEEEEEE
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--cCCCCCEEEE
Confidence            358999999987642 4445566666456999999999887776433   2322   33333321110  0246896654


Q ss_pred             c-C-CCchhHHHHHHhcccCcEEEEEcC
Q 022313          251 T-A-SGDHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       251 ~-~-g~~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                      . . .....+..+++.++++|.+.....
T Consensus       181 ~~p~~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         181 GYVVRTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCchHHHHHHHHhhcCCCCEEEEEec
Confidence            3 2 233457889999999998765543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.65  E-value=0.093  Score=43.40  Aligned_cols=98  Identities=18%  Similarity=0.191  Sum_probs=56.0

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH---HHhcCC-C--EEEeCCCHHHHHHhcC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEA---LSLLGA-D--KFVVSSDLEQMKALGK  243 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~---~~~~g~-~--~v~~~~~~~~~~~~~~  243 (299)
                      ++.....+.++++||-+|+|. |.+++.+|+ .|+ +|++++.++.- ..+   .++-+. +  .++..+. ..+.....
T Consensus        24 ai~~~~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~-~~~~~~~~   99 (316)
T d1oria_          24 SMFHNRHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKV-EEVELPVE   99 (316)
T ss_dssp             HHHTCHHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCT-TTCCCSSS
T ss_pred             HHHhccccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccH-HHcccccc
Confidence            444333346899999999875 666666665 576 79999987642 222   122332 2  2222221 11111136


Q ss_pred             CccEEEEcCCC---------chhHHHHHHhcccCcEEE
Q 022313          244 SLDFIIDTASG---------DHPFDAYMSLLKVAGVYV  272 (299)
Q Consensus       244 ~~d~v~d~~g~---------~~~~~~~~~~l~~~G~~v  272 (299)
                      .+|+|+.....         ...+...-+.|+|+|+++
T Consensus       100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            79999753322         113445568999999886

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.61  E-value=0.18  Score=41.84  Aligned_cols=73  Identities=18%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc----hHHHHHH--HhcCCCEE-EeCCCHHHHHHh--cCCccEEEEc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST----SKKEEAL--SLLGADKF-VVSSDLEQMKAL--GKSLDFIIDT  251 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~----~~~~~~~--~~~g~~~v-~~~~~~~~~~~~--~~~~d~v~d~  251 (299)
                      +.|||.|+ |.+|...+..+...|.+|+++++..    +......  ..-+.+.+ .+..+.+.+..+  ..++|+|+.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            57899998 9999999999999999999986421    1112111  11123222 244555555554  2589999998


Q ss_pred             CCC
Q 022313          252 ASG  254 (299)
Q Consensus       252 ~g~  254 (299)
                      ++.
T Consensus        82 Aa~   84 (347)
T d1z45a2          82 AGL   84 (347)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            874

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.56  E-value=0.2  Score=42.35  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEe
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLS  211 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~  211 (299)
                      |.+|||.|+ |.+|...+..+...|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            678999998 9999999999999999999986

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.55  E-value=0.072  Score=42.35  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      +.|||.|+ +++|++.++.+...|++|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            46788887 89999999999999999999998753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.52  E-value=0.14  Score=40.57  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      -+|++|+|.|.|.+|..+++++...|++|+.++..
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            58899999999999999999999999999887754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=92.46  E-value=0.15  Score=41.34  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHhcCCccEEE
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ...+.+..+||=+|+|. |..+..+++..  +.+|+.++.+++-.+.+.+.+   +...-+...+...+ ...+.||+|+
T Consensus        22 ~~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~   99 (281)
T d2gh1a1          22 VWKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAI   99 (281)
T ss_dssp             TSCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEE
T ss_pred             HhccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEE
Confidence            33456778898889874 78888888865  468999999998877775443   32221212221111 1236799998


Q ss_pred             EcCC-----C-chhHHHHHHhcccCcEEEEEc
Q 022313          250 DTAS-----G-DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       250 d~~g-----~-~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      ....     . ...++.+.+.|+|+|.++..-
T Consensus       100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            6433     2 225788999999999998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.38  E-value=0.05  Score=44.06  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      .|+|+|+|+.|++++..++..|.+|.++.+.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            589999999999999999999999999988753

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.034  Score=42.24  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .++..|+|+|+|+.|+.|+..+.+.|.+|+++.+.+
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            456789999999999999999999999999997543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.28  E-value=0.093  Score=38.74  Aligned_cols=35  Identities=31%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~  214 (299)
                      .|++|+|+|+|..|+.+++.++..+.  +|+++.+.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            47899999999999999999988774  788887665

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.27  E-value=0.29  Score=37.00  Aligned_cols=93  Identities=17%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCC--C--EEEeCCCHHHHHHhcCCccEEEE
Q 022313          178 NQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGA--D--KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       178 ~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~--~--~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      ..++++||=+|+|. |..++.+++ .+.+|++++.++...+.+.+.   .+.  .  .++..+..+.+  ..+.||+|+-
T Consensus        50 ~~~~~~VLDiGcG~-G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~--~~~~fD~Ii~  125 (194)
T d1dusa_          50 VDKDDDILDLGCGY-GVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--KDRKYNKIIT  125 (194)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--TTSCEEEEEE
T ss_pred             cCCCCeEEEEeecC-ChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh--ccCCceEEEE
Confidence            48899999998853 455555655 466999999998877776432   232  1  23322221111  1367999996


Q ss_pred             cCC---Cc----hhHHHHHHhcccCcEEEEE
Q 022313          251 TAS---GD----HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       251 ~~g---~~----~~~~~~~~~l~~~G~~v~~  274 (299)
                      ...   +.    ..++.+.+.|+++|+++.+
T Consensus       126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            432   21    2366778999999998764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.16  E-value=0.67  Score=34.46  Aligned_cols=91  Identities=22%  Similarity=0.247  Sum_probs=57.5

Q ss_pred             EEEEEcCChHHHH-HHHHHHHCC--CeEE-EEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhH
Q 022313          183 SLGVIGLGGLGHM-AVKFGKAFG--LNVT-VLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPF  258 (299)
Q Consensus       183 ~vlI~G~g~~G~~-a~~~a~~~g--~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  258 (299)
                      +|.|+|.|.+|.. .+...+..+  .+++ +.++++++.+.+.++++...++.  +.+.+-+ ...+|+|+-++......
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~--~~~ell~-~~~id~v~I~tp~~~h~   81 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD--SYEELLE-SGLVDAVDLTLPVELNL   81 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES--CHHHHHH-SSCCSEEEECCCGGGHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee--eeecccc-ccccceeeccccccccc
Confidence            5789999999964 466666543  3555 45677777777777888766542  2222111 25689999888876545


Q ss_pred             HHHHHhcccCcEEEEEcCC
Q 022313          259 DAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       259 ~~~~~~l~~~G~~v~~g~~  277 (299)
                      ..+..++.. |+=+.+..+
T Consensus        82 ~~~~~al~~-gk~V~~EKP   99 (181)
T d1zh8a1          82 PFIEKALRK-GVHVICEKP   99 (181)
T ss_dssp             HHHHHHHHT-TCEEEEESS
T ss_pred             ccccccccc-chhhhcCCC
Confidence            555555555 455566555

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.04  E-value=0.092  Score=41.75  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTS  215 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~  215 (299)
                      +|+|+|+|..|++++.++++.|. +|.++.++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            68999999999999999999996 8888887643

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.03  E-value=0.034  Score=41.86  Aligned_cols=98  Identities=14%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH--hcCCCEE--EeCCCHHHHHHhcCCccEEEEcCC
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALS--LLGADKF--VVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~--~~g~~~v--~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      -.|++++|+|. ..+|.=.+.++...|++|+..............  ..-...+  +.....+.+++.....|+++-++|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG  106 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVP  106 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEccC
Confidence            57899999997 589998888888899999877654221100000  0111111  122334566666677999999999


Q ss_pred             CchhHHHHHHhcccCcEEEEEcCC
Q 022313          254 GDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+. +.---+++++|..++++|..
T Consensus       107 ~p~-~~i~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         107 SEN-YKFPTEYIKEGAVCINFACT  129 (171)
T ss_dssp             CTT-CCBCTTTSCTTEEEEECSSS
T ss_pred             CCc-cccChhhcccCceEeecccc
Confidence            875 22233578889999999865

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.69  Score=38.10  Aligned_cols=103  Identities=15%  Similarity=0.092  Sum_probs=63.7

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHH----------hcC----CCEEEeCCCH
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALS----------LLG----ADKFVVSSDL  235 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~----------~~g----~~~v~~~~~~  235 (299)
                      .+.... ++++++|+=+|+|. |..+.++|+..++ +++.++.+++..+.+.+          .+|    .-.++..+-.
T Consensus       143 ~~~~~~-l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         143 MIDEIK-MTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHSC-CCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHcC-CCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            444444 49999988899874 8888899998887 79999999876655421          112    1123322211


Q ss_pred             -HHHHHhcCCccEEEEcCC--Cc---hhHHHHHHhcccCcEEEEEc
Q 022313          236 -EQMKALGKSLDFIIDTAS--GD---HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       236 -~~~~~~~~~~d~v~d~~g--~~---~~~~~~~~~l~~~G~~v~~g  275 (299)
                       ....+....+|+|+-..-  .+   ..+....+.|++||+++..-
T Consensus       221 ~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             SHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence             112222234678874222  11   13566778999999998764

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=91.95  E-value=0.23  Score=37.14  Aligned_cols=94  Identities=11%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC----CeEEEEeCC--chHHHHHHHhc----C---CC---------------EEEeCCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG----LNVTVLSTS--TSKKEEALSLL----G---AD---------------KFVVSSD  234 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g----~~v~~~~~~--~~~~~~~~~~~----g---~~---------------~v~~~~~  234 (299)
                      +|.|.|-|-+|++..+.+...+    ..|+++-..  .+....+. ++    |   .+               .+++.++
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLT-RYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHH-HEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhh-cccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            5788899999999998776432    356555532  22233332 22    1   10               1233334


Q ss_pred             HHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       235 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++.+.|-.-++|+|+||+|--.....+...|..+-+-|.+..+
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  124 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP  124 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecC
Confidence            4555555568999999999866677888888888766666655

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.89  E-value=0.12  Score=36.21  Aligned_cols=36  Identities=17%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      +++++++|+|+|.+|.-++..+...|.+|+++.+.+
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            445789999999999999999999999999998775

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=91.86  E-value=0.25  Score=36.90  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHH--hc----C---CC---------------EEEeCCCHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALS--LL----G---AD---------------KFVVSSDLEQ  237 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~--~~----g---~~---------------~v~~~~~~~~  237 (299)
                      +|.|.|-|-+|++..+.+.... .+++++-... ..+.+..  ++    |   .+               .+.+.++++.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~-d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT-DANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSS-CHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCC-CHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            5788899999999998886553 4666665432 2332211  11    1   00               1223333344


Q ss_pred             HHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          238 MKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       238 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      +.|-.-++|+|+||+|--.+.+.+...+..+-+-|.+..+
T Consensus        82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap  121 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecc
Confidence            4444458999999999877777888888877655555555

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.76  E-value=0.089  Score=40.66  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=29.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|..|+.++..+...|.+|.++.+++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            38899999999999999999999999999874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.73  E-value=0.089  Score=41.78  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchH
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSK  216 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~  216 (299)
                      -.|+|+|+|+.|+.++..+...|.+|.++.+.+.-
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35899999999999999999999999999987653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.094  Score=39.15  Aligned_cols=30  Identities=17%  Similarity=0.364  Sum_probs=27.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLST  212 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~  212 (299)
                      .|+|+|+|+.|+.|+..+.+.|.++.++.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEE
Confidence            489999999999999999999999999975

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.51  E-value=0.097  Score=41.16  Aligned_cols=33  Identities=33%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      .|+|+|+|+.|+.++..+...|.+|+++.+.+.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            388999999999999999999999999987654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.50  E-value=0.43  Score=40.26  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             EEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc---CCC----------------EEEeCCCH-HHHHHhcC
Q 022313          185 GVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL---GAD----------------KFVVSSDL-EQMKALGK  243 (299)
Q Consensus       185 lI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~---g~~----------------~v~~~~~~-~~~~~~~~  243 (299)
                      ++.+-++.|..++++|+..++ +|++.+.+++..+.+.+.+   +..                ..++..|. ..+.+..+
T Consensus        49 vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~  128 (375)
T d2dula1          49 VLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHR  128 (375)
T ss_dssp             EEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTT
T ss_pred             EEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhhcC
Confidence            344556678888999998888 8999999999888875443   111                11222222 23344457


Q ss_pred             CccEE-EEcCCCc-hhHHHHHHhcccCcEEEEE
Q 022313          244 SLDFI-IDTASGD-HPFDAYMSLLKVAGVYVLV  274 (299)
Q Consensus       244 ~~d~v-~d~~g~~-~~~~~~~~~l~~~G~~v~~  274 (299)
                      .||+| +|..|.+ +.+..++++++.+|.+...
T Consensus       129 ~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         129 YFHFIDLDPFGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             CEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCcccCCCCCCcHHHHHHHHHHhccCCEEEEE
Confidence            89977 7887763 4588899999999887655

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.50  E-value=0.084  Score=41.20  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=28.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~  214 (299)
                      +|+|+|+|..|+.++..++..|. +|+++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            48999999999999999999997 699998763

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.2  Score=41.88  Aligned_cols=74  Identities=15%  Similarity=0.090  Sum_probs=44.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-----HHHHHHHhc---C-CCEEE--eCCCHHHHHHhc--CCcc
Q 022313          181 GKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-----KKEEALSLL---G-ADKFV--VSSDLEQMKALG--KSLD  246 (299)
Q Consensus       181 g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-----~~~~~~~~~---g-~~~v~--~~~~~~~~~~~~--~~~d  246 (299)
                      .+.|||.|+ |.+|...+..+...|.+|+++++...     +.+.+.+..   . .-+++  +..+.+.+.+.-  ..+|
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            367899998 99999999999999999999998532     222221111   1 11122  233455554443  3679


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +|+.+++.
T Consensus        81 ~v~h~aa~   88 (357)
T d1db3a_          81 EVYNLGAM   88 (357)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeecc
Confidence            99998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.32  E-value=0.077  Score=42.40  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      +|+|+|+|..|+.++..+...|.+|+++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899999999999999999999999999876

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.28  E-value=0.27  Score=36.67  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC---CeEEEEeCCchHHHHHHH--hc----C-C--C----------------EEEeCCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG---LNVTVLSTSTSKKEEALS--LL----G-A--D----------------KFVVSSD  234 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g---~~v~~~~~~~~~~~~~~~--~~----g-~--~----------------~v~~~~~  234 (299)
                      +|.|.|-|-+|.++.+.+....   ..++++-... ..+.+..  ++    | .  +                .+.+.++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            5788999999999999776543   3555554332 2333211  22    2 0  0                1122223


Q ss_pred             HHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          235 LEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       235 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ++.+.|-..++|+|+||+|--.....+...+..+-+=|.+..+
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP  123 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAP  123 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSC
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecc
Confidence            3333333358999999999866677777788777655555555

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=91.13  E-value=0.78  Score=33.00  Aligned_cols=70  Identities=13%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHh-------cCCCEEEeCCCHHHHHHhcCCccEEEE
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSL-------LGADKFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~-------~g~~~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      +..+|.|+|+|.+|...+..+...+.  ++.+++.++++.+-....       .+...+.. .+.+    ...+.|+|+-
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~-~d~~----~~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-GEYS----DCKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-CCGG----GGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee-ccHH----HhccccEEEE
Confidence            45689999999999998888887774  899999887654321111       12233322 2221    2368899999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      ++|.
T Consensus        79 tag~   82 (146)
T d1ez4a1          79 TAGA   82 (146)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            9885

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.71  Score=36.12  Aligned_cols=41  Identities=22%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             hhhccCCCCCCEEEEEcCChHHHHHHHHH-HHCCCeEEEEeC
Q 022313          172 MMRHKMNQPGKSLGVIGLGGLGHMAVKFG-KAFGLNVTVLST  212 (299)
Q Consensus       172 l~~~~~~~~g~~vlI~G~g~~G~~a~~~a-~~~g~~v~~~~~  212 (299)
                      ++....--++.+|+|.|.|.+|..+++++ +..|++++.++.
T Consensus        22 ~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          22 MDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             HHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             HHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeec
Confidence            33333325789999999999999999887 567999888764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=91.08  E-value=0.48  Score=38.99  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHh---cCCC--EEEeCCCHHHHHH---hcCCccEEEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSL---LGAD--KFVVSSDLEQMKA---LGKSLDFIID  250 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~---~~~~~d~v~d  250 (299)
                      .+|++||=.++|. |..++.+|+ .+++|+.++.++..++.+++.   .|.+  .++..+..+..+.   ..+.||+|+-
T Consensus       144 ~~g~rVLDl~~gt-G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYA-GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTT-THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCC-cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4688998887643 233344554 355999999999988777433   3443  2333333333333   3478999986


Q ss_pred             cCCC---------------chhHHHHHHhcccCcEEEEEcCC
Q 022313          251 TASG---------------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....               ...+..+++.|+|||.++...-.
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            4321               12356778899999999886543

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.07  E-value=0.2  Score=40.07  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             HhhhccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeC
Q 022313          171 PMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLST  212 (299)
Q Consensus       171 al~~~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~  212 (299)
                      +++....--++++|+|.|.|.+|..+++++...|++|+.+..
T Consensus        26 ~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          26 VMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             HHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            344443335789999999999999999999999999988764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=91.04  E-value=0.23  Score=39.43  Aligned_cols=96  Identities=18%  Similarity=0.133  Sum_probs=59.5

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHH---HhcCC-C--EEEeCCCHHHHHHhcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEAL---SLLGA-D--KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~---~~~g~-~--~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .+.+.++||=+|+|. |..+..+++.. +.++++++.. +..+.+.   ++.+. +  .++..+-   ......++|+|+
T Consensus        77 d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~v~  151 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAII  151 (253)
T ss_dssp             CCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEEE
T ss_pred             CCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhccccc---hhhcccchhhee
Confidence            347778898888864 77888888877 4688888864 3343332   23332 1  2222211   112235799987


Q ss_pred             EcCC-----Cc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          250 DTAS-----GD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g-----~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      -..-     ..   ..++.+.+.|+|+|+++..-..
T Consensus       152 ~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         152 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             eccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            5322     11   2367788999999999987544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.03  E-value=0.81  Score=32.47  Aligned_cols=73  Identities=12%  Similarity=0.121  Sum_probs=46.9

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHh-----cCCccEEEEcCCCc
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKAL-----GKSLDFIIDTASGD  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-----~~~~d~v~d~~g~~  255 (299)
                      +|.|.|+ |-+|...++..... +.++.......+..... ..-++|.+++...++...+.     ..+.-+|+-++|-.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~-~~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG~~   79 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL-TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT   79 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHH-HTTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECCCCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhh-ccccCCEEEEcccHHHHHHHHHHHHhcCCCEEEeccccc
Confidence            5889997 99999988887755 55666655444444444 23457777777665433221     35677777777754


Q ss_pred             h
Q 022313          256 H  256 (299)
Q Consensus       256 ~  256 (299)
                      .
T Consensus        80 ~   80 (135)
T d1yl7a1          80 A   80 (135)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.97  E-value=0.15  Score=39.03  Aligned_cols=67  Identities=15%  Similarity=0.003  Sum_probs=42.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcCCCEEEeCCCH-HHHHHhcCCccEEEEcCCCc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLGADKFVVSSDL-EQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~d~v~d~~g~~  255 (299)
                      ++|||+|+ |.+|...+..+...+.  +|++..|.+...      . ...-....+. +....+....|.|+.++|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------~-~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------H-PRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------C-TTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------c-ccccccccchhhhhhccccchheeeeeeeee
Confidence            68999998 9999999998888886  666666543210      0 0111112222 22233446789999998753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.88  E-value=0.11  Score=39.90  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|+.|+.++..+.+.|.+|+++...+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48899999999999999999999999998753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.88  E-value=0.67  Score=33.31  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhcC-C---CEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLLG-A---DKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~g-~---~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      .+|.|+|+ |.+|...+.++...+.  ++.+++.++.+.+.+  .+. .   ...-.........+..++.|+|+-+.|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence            36889997 9999999999998876  788888776544333  222 1   1100011122223334889999998883


Q ss_pred             c---------------hhHHHHH---HhcccCcEEEEEcCC
Q 022313          255 D---------------HPFDAYM---SLLKVAGVYVLVGFP  277 (299)
Q Consensus       255 ~---------------~~~~~~~---~~l~~~G~~v~~g~~  277 (299)
                      +               ..++...   ....+++.++.+..+
T Consensus        79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP  119 (144)
T d1mlda1          79 PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (144)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            2               1122222   233677898888776

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=90.73  E-value=0.14  Score=40.81  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|.+|+.++..+...|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            58999999999999999999999999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.14  Score=39.41  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=28.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      .|+|+|+|+.|+.++..|.++|.+|.++.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4789999999999999999999999999875

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.62  E-value=0.13  Score=38.34  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=27.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEe
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLS  211 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~  211 (299)
                      ++++|+|+|+|.+|.-++..+++.|.++.++.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            57899999999999999999999998655443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=90.60  E-value=0.45  Score=36.87  Aligned_cols=94  Identities=15%  Similarity=0.168  Sum_probs=55.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHHHC-CCeEE-EEeCCchHHHHHHHhcCCC--EEEeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          182 KSLGVIGLGGLGHM-AVKFGKAF-GLNVT-VLSTSTSKKEEALSLLGAD--KFVVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~g~~G~~-a~~~a~~~-g~~v~-~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      =+|.|+|+|.+|.. .+...+.. +.+++ ++++++++.+.+.+++|.+  .+..+.+.+.+-+ ...+|+|+-++....
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~-~~~iD~V~I~tp~~~  112 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAK-DPKIDAVYIILPNSL  112 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGG-CTTCCEEEECSCGGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcc-cccceeeeeccchhh
Confidence            36788999999863 44444433 56666 5567778888887888753  2333333221110 246888888777665


Q ss_pred             hHHHHHHhcccCcEEEEEcCC
Q 022313          257 PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....+..++.. |+=+.+..+
T Consensus       113 H~~~~~~al~~-gk~v~~EKP  132 (221)
T d1h6da1         113 HAEFAIRAFKA-GKHVMCEKP  132 (221)
T ss_dssp             HHHHHHHHHHT-TCEEEECSS
T ss_pred             hhhHHHHhhhc-chhhhcCCC
Confidence            45555566654 344445444

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.56  E-value=0.16  Score=41.30  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLST  212 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~  212 (299)
                      -+|++|+|.|.|.+|..+++++...|++|+.+..
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            4789999999999999999999999999998864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.54  E-value=0.16  Score=41.16  Aligned_cols=37  Identities=24%  Similarity=0.226  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-C--hHHHHHHHHHHHCCCeEEEEeCCchH
Q 022313          180 PGKSLGVIGL-G--GLGHMAVKFGKAFGLNVTVLSTSTSK  216 (299)
Q Consensus       180 ~g~~vlI~G~-g--~~G~~a~~~a~~~g~~v~~~~~~~~~  216 (299)
                      +|+++||.|+ |  ++|++.++.+...|++|++..+++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            7899999997 4  79999999999999999999887543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.48  E-value=0.15  Score=41.84  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=30.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      -.|+|+|+|..|++++..++..|.++.++.+.++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3589999999999999999999999999987643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.35  E-value=0.17  Score=39.14  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|+.|+.|+..|.+.|.+|.+++..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48899999999999999999999999998654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=90.28  E-value=0.14  Score=38.74  Aligned_cols=93  Identities=13%  Similarity=0.054  Sum_probs=55.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhcC---CCEEEeCCCHHHHHHhcCCccEEEEcCCCch
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLLG---ADKFVVSSDLEQMKALGKSLDFIIDTASGDH  256 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~  256 (299)
                      =+|.|+|+ |-+|+-.++++..+-. ++..+......-+.+.+.+.   .......  .....+...+.|++|.+++...
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~alp~~~   83 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCCLPHGT   83 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEECCSSSH
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeeccccch
Confidence            35788998 9999999999997754 66655543322222211111   1100000  0011112357899999999887


Q ss_pred             hHHHHHHhcccCcEEEEEcCC
Q 022313          257 PFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       257 ~~~~~~~~l~~~G~~v~~g~~  277 (299)
                       .......+...+.++.....
T Consensus        84 -s~~~~~~l~~~~~~v~~~~~  103 (183)
T d2cvoa1          84 -TQEIIKGLPQELKIVDLSAD  103 (183)
T ss_dssp             -HHHHHHTSCSSCEEEECSST
T ss_pred             -HHHHHHHHHhcCcccccchh
Confidence             66666778888888776544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.13  E-value=0.72  Score=32.40  Aligned_cols=29  Identities=21%  Similarity=0.374  Sum_probs=24.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCCeEEEEe
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGLNVTVLS  211 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~  211 (299)
                      +|.|.|+ |-+|+...+++...+.+++...
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~i   31 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKV   31 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence            5889997 9999999999998888766543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.17  Score=41.74  Aligned_cols=71  Identities=17%  Similarity=0.058  Sum_probs=46.4

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHhcCCCEEEeC--CCH-HHHHHhcCCccEEEEcCCC
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFG-LNVTVLSTSTSKKEEALSLLGADKFVVS--SDL-EQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~--~~~-~~~~~~~~~~d~v~d~~g~  254 (299)
                      +|||.|+ |.+|...++.+...| .+|+++++.......+. +...-.++..  .+. +..+....++|+|+-+++-
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-cCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            5899998 999999998887777 58999987765555442 2221223322  222 3333344579999998874

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.68  E-value=0.21  Score=38.78  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|+.|+.|+..+.+.|.+|.++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47889999999999999999999999998654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.45  Score=34.38  Aligned_cols=90  Identities=21%  Similarity=0.266  Sum_probs=50.0

Q ss_pred             EEEEEcC-ChHHHHHHHH-HHHCC---CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          183 SLGVIGL-GGLGHMAVKF-GKAFG---LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~-a~~~g---~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      +|.|+|+ |.+|+-.+++ +.+..   .++....++...............+....+....    .++|++|-+++... 
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~----~~~DivF~a~~~~~-   77 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL----KALDIIVTCQGGDY-   77 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH----HTCSEEEECSCHHH-
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhh----hcCcEEEEecCchH-
Confidence            6899999 9999999975 44432   2666665553322111000011112222222221    57999999999876 


Q ss_pred             HHHHHHhcccCc---EEEEEcCC
Q 022313          258 FDAYMSLLKVAG---VYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G---~~v~~g~~  277 (299)
                      .......+...|   .+++.+..
T Consensus        78 s~~~~~~~~~~g~~~~VID~Ss~  100 (146)
T d1t4ba1          78 TNEIYPKLRESGWQGYWIDAASS  100 (146)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSST
T ss_pred             HHHhhHHHHhcCCCeecccCCcc
Confidence            444444443433   57777655

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.56  E-value=0.2  Score=38.39  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|+.|+.++..|.+.|.+|.++.+.+
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            37889999999999999999999999997653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=89.56  E-value=0.83  Score=32.75  Aligned_cols=92  Identities=18%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHH----HHH---hcCCCEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEE----ALS---LLGADKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~----~~~---~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      .+|.|+|+|.+|..++..+...+.  ++.+++.++++.+-    +.+   ..+...+....+.+    ...+.|+|+-+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~----~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE----ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG----GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH----HhhCCcEEEEec
Confidence            468889999999999888887776  78888887765432    111   11223333222211    236789999999


Q ss_pred             CCch---------------hHH---HHHHhcccCcEEEEEcCC
Q 022313          253 SGDH---------------PFD---AYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~~---------------~~~---~~~~~l~~~G~~v~~g~~  277 (299)
                      |.+.               .+.   ..+....+++.++.+..+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  120 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP  120 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence            8521               111   222344567887777655

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.41  E-value=0.16  Score=41.50  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|..|+.++..+...|.+|.++...+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            58999999999999999998899999998763

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.40  E-value=0.37  Score=33.92  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcCCh--HH---------HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEE-eCCCHHHHHHhc--CC
Q 022313          179 QPGKSLGVIGLGG--LG---------HMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFV-VSSDLEQMKALG--KS  244 (299)
Q Consensus       179 ~~g~~vlI~G~g~--~G---------~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~--~~  244 (299)
                      ..-++|||+|+|+  +|         .-|+..++..|.+++.+..+++....- ..+ +|+++ .+-+.+.+.++-  +.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd-~d~-aD~lYfePlt~e~v~~Ii~~E~   82 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTD-PEM-ADATYIEPIHWEVVRKIIEKER   82 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGC-GGG-SSEEECSCCCHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcC-hhh-cceeeeecCCHHHHHHHHHHhC
Confidence            3558899999874  44         445555667799999999998876432 111 45554 344556665542  68


Q ss_pred             ccEEEEcCCCchhHHHHHHhcc
Q 022313          245 LDFIIDTASGDHPFDAYMSLLK  266 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~l~  266 (299)
                      .|.|+-..|+...++.+.++.+
T Consensus        83 pd~il~~~GGQtalnla~~L~~  104 (127)
T d1a9xa3          83 PDAVLPTMGGQTALNCALELER  104 (127)
T ss_dssp             CSEEECSSSHHHHHHHHHHHHH
T ss_pred             cCCeEEEeeeehHhHHHHHHHH
Confidence            8999988888765666665543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.33  E-value=0.24  Score=40.31  Aligned_cols=71  Identities=20%  Similarity=0.164  Sum_probs=45.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHhcCCC---EE--EeCCCHHHHHHh--cCCccEEEEc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTSK--KEEALSLLGAD---KF--VVSSDLEQMKAL--GKSLDFIIDT  251 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~~--~~~~~~~~g~~---~v--~~~~~~~~~~~~--~~~~d~v~d~  251 (299)
                      ++|||.|+ |.+|...+..+...|++|+++++....  ...+ +.++.+   .+  .|..+.+.+...  ....++++.+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHH-HHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            58999998 999999999998889999999876432  2233 334422   12  234445444443  2345666666


Q ss_pred             CC
Q 022313          252 AS  253 (299)
Q Consensus       252 ~g  253 (299)
                      ..
T Consensus        80 a~   81 (321)
T d1rpna_          80 AA   81 (321)
T ss_dssp             CS
T ss_pred             cc
Confidence            55

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.24  E-value=0.18  Score=38.90  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      .++|+|+|+.|+.++..+..+|.+|.++...
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4889999999999999999999999999865

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.09  E-value=0.47  Score=34.57  Aligned_cols=72  Identities=19%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHh-------cCCC-EEEeCCCHHHHHHhcCCccEEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSL-------LGAD-KFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~-------~g~~-~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      ++..+|.|+|+|.+|...+.++...+. ++.+++.++++.+-....       ++.. .+....+.   .+...+.|+|+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~adiVv   81 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSY---EAALTGADCVI   81 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSH---HHHHTTCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCch---hhhhcCCCeEE
Confidence            667889999999999888887777775 888888887654332222       2211 12212211   12237899999


Q ss_pred             EcCC
Q 022313          250 DTAS  253 (299)
Q Consensus       250 d~~g  253 (299)
                      -+.|
T Consensus        82 itag   85 (154)
T d1pzga1          82 VTAG   85 (154)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            9886

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=89.06  E-value=0.95  Score=35.23  Aligned_cols=95  Identities=13%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             CEEEEEcCCh----HHHHHHHHHHHC--CCeEEE-EeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCC
Q 022313          182 KSLGVIGLGG----LGHMAVKFGKAF--GLNVTV-LSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASG  254 (299)
Q Consensus       182 ~~vlI~G~g~----~G~~a~~~a~~~--g~~v~~-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~  254 (299)
                      =+|.|+|.|.    ++...+...+..  +.++++ .+++.++.+.+.++++....-.+.+.+.+-+ ...+|+|+.++..
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~iD~V~i~tp~   95 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQ-YKDIDMIVVSVKV   95 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHH-CTTCSEEEECSCH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccc-ccccceeeccCCC
Confidence            4688899865    444444444443  457774 5666777777778888544333343333211 2578999988887


Q ss_pred             chhHHHHHHhcccC-----cEEEEEcCC
Q 022313          255 DHPFDAYMSLLKVA-----GVYVLVGFP  277 (299)
Q Consensus       255 ~~~~~~~~~~l~~~-----G~~v~~g~~  277 (299)
                      ....+.+..++..+     ++-+++..+
T Consensus        96 ~~h~~~~~~al~aG~~~~~~k~V~~EKP  123 (237)
T d2nvwa1          96 PEHYEVVKNILEHSSQNLNLRYLYVEWA  123 (237)
T ss_dssp             HHHHHHHHHHHHHSSSCSSCCEEEEESS
T ss_pred             cchhhHHHHHHHhcccccCCceEEEecc
Confidence            66566666666544     455666666

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.03  E-value=1.3  Score=32.88  Aligned_cols=89  Identities=21%  Similarity=0.233  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCch---
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDH---  256 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~---  256 (299)
                      ++++|.|+|=|+=|.+-++=++-+|.+|++--|...+....+++-|.+..       .+.+.....|+|.-.+....   
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-------~~~eA~~~aDiim~L~PD~~q~~   87 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-------DVKTAVAAADVVMILTPDEFQGR   87 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-------CHHHHHHTCSEEEECSCHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-------cHHHHhhhcCeeeeecchHHHHH
Confidence            56889999999999999999999999999988887655444467676543       34455577899998887543   


Q ss_pred             hH-HHHHHhcccCcEEEEEc
Q 022313          257 PF-DAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       257 ~~-~~~~~~l~~~G~~v~~g  275 (299)
                      .+ +.....|+++-.+.+..
T Consensus        88 vy~~~I~p~lk~g~~L~FaH  107 (182)
T d1np3a2          88 LYKEEIEPNLKKGATLAFAH  107 (182)
T ss_dssp             HHHHHTGGGCCTTCEEEESC
T ss_pred             HHHHhhhhhcCCCcEEEEec
Confidence            23 23455677777766653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.19  Score=41.06  Aligned_cols=30  Identities=40%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      |+|+|+|..|+.++..++..|.+|+++...
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            789999999999999999999999999865

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=88.98  E-value=3.6  Score=31.03  Aligned_cols=94  Identities=13%  Similarity=0.061  Sum_probs=62.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHH---HhcCCCE--EEeCCCHHHHHHh-cCCccEEEEcCC
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEAL---SLLGADK--FVVSSDLEQMKAL-GKSLDFIIDTAS  253 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~---~~~g~~~--v~~~~~~~~~~~~-~~~~d~v~d~~g  253 (299)
                      ...||=+|+|. |..++.+|+.. +..++.++.+......+.   ++.+.+.  ++..+.......+ ...+|.|+-...
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            34556678875 77888888876 569999999988776653   3455443  3333323333333 356888776544


Q ss_pred             Cc--------------hhHHHHHHhcccCcEEEEEc
Q 022313          254 GD--------------HPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       254 ~~--------------~~~~~~~~~l~~~G~~v~~g  275 (299)
                      .+              ..++.+.+.|+|+|.+...-
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            32              35788899999999987763

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.98  E-value=0.21  Score=40.61  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=28.5

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      .|+|+|+|..|+.++..|...|++|+++...
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899999999999999999999999999865

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.96  E-value=0.22  Score=41.13  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=28.1

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCC--CeEEEEeCCch
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFG--LNVTVLSTSTS  215 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g--~~v~~~~~~~~  215 (299)
                      ++|+|+|+|..|++++..++..+  .+|++..+.++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999987776655  48999988753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=88.86  E-value=1.2  Score=32.45  Aligned_cols=95  Identities=17%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhc-------CCCEEEeCCCHHHHHHhcCCccEEE
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLL-------GADKFVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .+..+|.|+|+|.+|...+..+...+.  ++.+++.+++..+-....+       +...++...+.+    ...+.|+|+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~----~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS----VTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG----GGTTCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh----hcccccEEE
Confidence            456799999999999999999998886  7888888765542111111       222233232221    236789999


Q ss_pred             EcCCCc---------------hhHHH---HHHhcccCcEEEEEcCC
Q 022313          250 DTASGD---------------HPFDA---YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g~~---------------~~~~~---~~~~l~~~G~~v~~g~~  277 (299)
                      -++|.+               ..++.   .+.-..+++.++.+..+
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            988853               11222   22234567888887766

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.85  E-value=0.21  Score=37.64  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=28.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      ..+|+|+|+|+.|+.++..+.+.|.+++++.+.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            367999999999999999999999999888743

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.82  E-value=0.24  Score=39.52  Aligned_cols=31  Identities=19%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      .|+|+|+|.+|+.++..+...|.+|+++++.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999864

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=88.78  E-value=2.2  Score=31.17  Aligned_cols=93  Identities=15%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             CCCCCEEEEEcC--ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHH---HhcCC-CEEEeCCCHHHH---HHhcCCccEE
Q 022313          178 NQPGKSLGVIGL--GGLGHMAVKFGKAFGLNVTVLSTSTSKKEEAL---SLLGA-DKFVVSSDLEQM---KALGKSLDFI  248 (299)
Q Consensus       178 ~~~g~~vlI~G~--g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~---~~~g~-~~v~~~~~~~~~---~~~~~~~d~v  248 (299)
                      +.++.+||=.++  |.+|+   . |...|++++.++.+++..+.+.   +.++. +.+...+.....   ......||+|
T Consensus        39 ~~~g~~vLDl~~G~G~~~i---~-a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGL---E-AASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHH---H-HHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             ccCCCeEEEeccccchhhh---h-hhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence            367788876654  55554   3 3335899999999988776553   34554 445444333222   2234689999


Q ss_pred             EEcC----CCchhHHHHH--HhcccCcEEEEE
Q 022313          249 IDTA----SGDHPFDAYM--SLLKVAGVYVLV  274 (299)
Q Consensus       249 ~d~~----g~~~~~~~~~--~~l~~~G~~v~~  274 (299)
                      |-..    +-...+...+  ..++++|.++.-
T Consensus       115 f~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             EEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            8532    2222233333  368888877643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.73  E-value=0.26  Score=37.37  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEA  220 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~  220 (299)
                      +|.|+|.|-+|+..+..+ ..|.+|+.++.++++.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l   38 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKI   38 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHH
T ss_pred             EEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHH
Confidence            578999999999887655 4699999999999988877

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.65  E-value=0.93  Score=32.58  Aligned_cols=69  Identities=23%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHh-------cCCCEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSL-------LGADKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~-------~g~~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      ++|.|+|+|.+|..++..+...+.  ++..++.++++.+-...+       ++....+...+.+    ...+.|+|+-+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~----~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA----ALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG----GGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH----HhccccEEEEec
Confidence            578899999999888887776664  788888877754321111       1222222222211    227889999888


Q ss_pred             CC
Q 022313          253 SG  254 (299)
Q Consensus       253 g~  254 (299)
                      |.
T Consensus        78 G~   79 (146)
T d1hyha1          78 GN   79 (146)
T ss_dssp             SC
T ss_pred             cc
Confidence            83

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=3.5  Score=33.92  Aligned_cols=100  Identities=13%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHhcCCCEEEeCCC--------H---------
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS---TSKKEEALSLLGADKFVVSSD--------L---------  235 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~---~~~~~~~~~~~g~~~v~~~~~--------~---------  235 (299)
                      +.+++++.|+...+|..|.+.+..|+.+|.+++++...   +++.+.+ +.+|++.+....+        .         
T Consensus        92 g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i-~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~  170 (355)
T d1jbqa_          92 GTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVL-RALGAEIVRTPTNARFDSPESHVGVAWRLKN  170 (355)
T ss_dssp             TCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHH-HHTTCEEEECCC-------CCHHHHHHHHHH
T ss_pred             CCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHH-HhcCCeEEEecccccchhhhhhhhHHHHHHH
Confidence            33466777766777999999999999999977777544   3445555 7899875542211        0         


Q ss_pred             --------------------------HHHHHhcCCccEEEEcCCCchhHHH---HHHhcccCcEEEEEcC
Q 022313          236 --------------------------EQMKALGKSLDFIIDTASGDHPFDA---YMSLLKVAGVYVLVGF  276 (299)
Q Consensus       236 --------------------------~~~~~~~~~~d~v~d~~g~~~~~~~---~~~~l~~~G~~v~~g~  276 (299)
                                                +.+.++...+|.++-++|+.-++..   .++...+.-+++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         171 EIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             HSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             hccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecc
Confidence                                      0011112468999999997654443   4445556677776643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.42  E-value=0.21  Score=41.07  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=26.7

Q ss_pred             EEEEEcCChHHHHHHHHHH-----HCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGK-----AFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~-----~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|..|++++.++.     ..|.+|+++.+.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            4899999999998888774     5688999998764

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=88.34  E-value=4.9  Score=31.82  Aligned_cols=100  Identities=14%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC--chHHHHHHHhcCCCEEEeCCCHHH----------------
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS--TSKKEEALSLLGADKFVVSSDLEQ----------------  237 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~--~~~~~~~~~~~g~~~v~~~~~~~~----------------  237 (299)
                      +.+++..+|+...+|..|++++..++.+|.+++++...  +.......+.+|++.++...+...                
T Consensus        55 g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~  134 (292)
T d2bhsa1          55 GEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEG  134 (292)
T ss_dssp             TSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSS
T ss_pred             CCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccc
Confidence            44466676666677999999999999999966666542  333333447899875543332100                


Q ss_pred             -----------------------HHHhcCCccEEEEcCCCchhHH---HHHHhcccCcEEEEEc
Q 022313          238 -----------------------MKALGKSLDFIIDTASGDHPFD---AYMSLLKVAGVYVLVG  275 (299)
Q Consensus       238 -----------------------~~~~~~~~d~v~d~~g~~~~~~---~~~~~l~~~G~~v~~g  275 (299)
                                             +.++.+.+|.++-++|+..++.   ..++...+..+++.+-
T Consensus       135 ~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         135 KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             EECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                                   0011245899999888765444   4445566677776654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.24  E-value=0.25  Score=37.85  Aligned_cols=30  Identities=27%  Similarity=0.341  Sum_probs=27.7

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      |+|+|+|+-|+.|+..|.+.|.+|.++...
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            788999999999999999999999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=0.28  Score=37.55  Aligned_cols=30  Identities=23%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      |+|+|+|+.|+.++..+.+.|.+|.++...
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            788999999999999999999999999764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.18  E-value=0.87  Score=33.28  Aligned_cols=94  Identities=19%  Similarity=0.234  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHH----HHHH---hcCCCEEEeCCCHHHHHHhcCCccEEEE
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKE----EALS---LLGADKFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~----~~~~---~~g~~~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      +..+|.|+|+|.+|...+..+...+.  ++.+++.+++..+    .+.+   .++...++...+.    +...+.|+|+-
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~----~~~~~adivvi   93 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY----NVSANSKLVII   93 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG----GGGTTEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch----hhhccccEEEE
Confidence            33579999999999999998888876  7888888765432    1211   1122333322221    12278999999


Q ss_pred             cCCCch---------------hHHHH---HHhcccCcEEEEEcCC
Q 022313          251 TASGDH---------------PFDAY---MSLLKVAGVYVLVGFP  277 (299)
Q Consensus       251 ~~g~~~---------------~~~~~---~~~l~~~G~~v~~g~~  277 (299)
                      +.|.+.               .++..   +....++|.++.+..+
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP  138 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP  138 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence            888521               11221   2234677888887766

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.78  E-value=0.26  Score=38.18  Aligned_cols=31  Identities=35%  Similarity=0.331  Sum_probs=28.1

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      .|+|+|+|+.|+.|+..|.+.|.+|.++...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4889999999999999999999999999843

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.53  E-value=0.26  Score=40.29  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          181 GKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       181 g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      .-.|+|+|+|..|+.|+..|...|++|+++...
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            345899999999999999999999999999764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.38  E-value=1.5  Score=35.67  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHhcC-----CCEEE--eCCCHHHHHHhcCCcc
Q 022313          179 QPGKSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTST----SKKEEALSLLG-----ADKFV--VSSDLEQMKALGKSLD  246 (299)
Q Consensus       179 ~~g~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~----~~~~~~~~~~g-----~~~v~--~~~~~~~~~~~~~~~d  246 (299)
                      ..-+++||.|+ |.+|...+..+...|.+|+++++..    ...........     .-+++  +..+...........+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~   93 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD   93 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence            45578999998 9999999999999999999997522    22222211111     12233  3334444444456677


Q ss_pred             EEEEcCC
Q 022313          247 FIIDTAS  253 (299)
Q Consensus       247 ~v~d~~g  253 (299)
                      .++.+..
T Consensus        94 ~v~~~~a  100 (341)
T d1sb8a_          94 YVLHQAA  100 (341)
T ss_dssp             EEEECCS
T ss_pred             ccccccc
Confidence            7776554

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.20  E-value=0.58  Score=35.39  Aligned_cols=94  Identities=15%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             EEEEEcCChHHHHHHHHHHHCC-----CeEEEEe-C--CchHHHHHHHhc----C---CC---------------EEE--
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFG-----LNVTVLS-T--STSKKEEALSLL----G---AD---------------KFV--  230 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g-----~~v~~~~-~--~~~~~~~~~~~~----g---~~---------------~v~--  230 (299)
                      +|.|.|-|-+|+++.+.+...+     .+++.+. .  +.+....+. ++    |   .+               .++  
T Consensus         4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLl-kyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g   82 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQM-RYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNG   82 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHH-HEETTTEECSSCEEEECSSTTCSSCCEEEETT
T ss_pred             EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHh-hccccccCCCceEEEccCccccccccceEEcC
Confidence            5788999999999998765432     2455433 2  233444443 22    1   00               011  


Q ss_pred             -------eCCCHHHHHHhcCCccEEEEcCCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          231 -------VSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       231 -------~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                             +.++++.+.|-.-++|+|+||+|--...+.+...+..+-+-|.+..+
T Consensus        83 ~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  136 (190)
T d1k3ta1          83 HRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAP  136 (190)
T ss_dssp             EEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             ceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccC
Confidence                   12333444444458999999999766677788888877655666555

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.04  E-value=2.3  Score=30.05  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhc-------CCCEEEeCCCHHHHHHhcCCccEEEEcCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLL-------GADKFVVSSDLEQMKALGKSLDFIIDTAS  253 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~v~d~~g  253 (299)
                      +|.|+|+|.+|...+..+...+.  ++..++.++++.+-...++       +...+. ..+.    +...+.|+|+-++|
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~-~~~~----~~~~~adivvitag   76 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY-AGDY----ADLKGSDVVIVAAG   76 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE-ECCG----GGGTTCSEEEECCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc-CCcH----HHhcCCCEEEEecc
Confidence            57788999999888877776664  7888888776543221111       111222 2221    12368999999987


Q ss_pred             Cch---------------h---HHHHHHhcccCcEEEEEcCC
Q 022313          254 GDH---------------P---FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       254 ~~~---------------~---~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+.               .   +...+....|++.++.+..+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            421               1   11233455677888777655

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=86.88  E-value=2.2  Score=34.77  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             CCCCCCEEEEEcC--ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc---CC----CEEEeCCCHHHHHHh---cC
Q 022313          177 MNQPGKSLGVIGL--GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL---GA----DKFVVSSDLEQMKAL---GK  243 (299)
Q Consensus       177 ~~~~g~~vlI~G~--g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~---g~----~~v~~~~~~~~~~~~---~~  243 (299)
                      .+.+|++||=..+  |+.++.   ++ ..|+ +|+.++.++...+.+.+.+   |.    -.++..+-.+.++..   ..
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~---aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~  216 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVA---AA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL  216 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHH---HH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HhhCCCceeecCCCCcHHHHH---HH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence            3478999998754  555543   23 3577 7999999988887765443   22    134444444444443   46


Q ss_pred             CccEEEEcCCC---------------chhHHHHHHhcccCcEEEEEcCC
Q 022313          244 SLDFIIDTASG---------------DHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       244 ~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .||+|+-....               ...+..++++|+++|.++..--.
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            79999864331               12466788999999999876543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.80  E-value=0.35  Score=37.33  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=27.4

Q ss_pred             EEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCch
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTS  215 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~  215 (299)
                      +|.|+|+|+.|+.|+..++..  +.+|+++.+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            799999999999999876544  679999987754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.72  E-value=0.3  Score=35.65  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=56.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCC---eEEEEeCCchHHHHHHHhcCCCE--EEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGL---NVTVLSTSTSKKEEALSLLGADK--FVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~---~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      -+|.|+|+ |-+|.-.++++.....   ++..+..+...-+..  ......  .....+     ......|++|-+.+..
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~~~~~~~~~~~~-----~~~~~~d~~f~~~~~~   74 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFKDQDITIEETTE-----TAFEGVDIALFSAGSS   74 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EETTEEEEEEECCT-----TTTTTCSEEEECSCHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--cccCCcccccccch-----hhhhhhhhhhhccCcc
Confidence            47899999 9999999999987743   444444331111111  001111  111111     1225789999999987


Q ss_pred             hhHHHHHHhcccCcEEEEEcCC
Q 022313          256 HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       256 ~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .......+....+-++++.+.-
T Consensus        75 ~s~~~~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          75 TSAKYAPYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             HHHHHHHHHHHTTCEEEECSST
T ss_pred             chhhHHhhhccccceehhcChh
Confidence            7667777788888999999766

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=86.63  E-value=0.43  Score=37.86  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEEcCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHH---HhcCC-CE--EEeCCCHHHHHHhcCCccEEE
Q 022313          177 MNQPGKSLGVIGLGGLGHMAVKFGKAF-GLNVTVLSTSTSKKEEAL---SLLGA-DK--FVVSSDLEQMKALGKSLDFII  249 (299)
Q Consensus       177 ~~~~g~~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~~~~~~~~~~~---~~~g~-~~--v~~~~~~~~~~~~~~~~d~v~  249 (299)
                      .+.+.++||=+|+|. |..+..++++. +.++++++. ++..+.+.   ++.|. +.  +...+.   ......++|+++
T Consensus        78 d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~---~~~~p~~~D~v~  152 (256)
T d1qzza2          78 DWSAVRHVLDVGGGN-GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF---FKPLPVTADVVL  152 (256)
T ss_dssp             CCTTCCEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSCCEEEEE
T ss_pred             CCccCCEEEEECCCC-CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec---cccccccchhhh
Confidence            346778888888764 78888999987 569999986 44443332   23342 22  222211   112335789887


Q ss_pred             EcCC-----Cc---hhHHHHHHhcccCcEEEEEcCC
Q 022313          250 DTAS-----GD---HPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       250 d~~g-----~~---~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      -.--     ..   ..++.+.+.|+|+|+++.+...
T Consensus       153 ~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         153 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            5322     11   2467788999999999988754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.56  E-value=1.9  Score=30.66  Aligned_cols=91  Identities=18%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHH-------HHHhcCC-CEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEE-------ALSLLGA-DKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~-------~~~~~g~-~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      +|.|+|+|.+|...+..+...+.  ++.+++.++++.+-       ....++. ..+....+.+    ...+.|+|+-+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~----~~~~adiVvita   77 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS----LLKGSEIIVVTA   77 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG----GGTTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH----HhccccEEEEec
Confidence            57788999999988887777665  78888887765322       1111222 3344333322    337889999888


Q ss_pred             CCc---------------hhHHHHHH---hcccCcEEEEEcCC
Q 022313          253 SGD---------------HPFDAYMS---LLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~---------------~~~~~~~~---~l~~~G~~v~~g~~  277 (299)
                      |.+               ..+....+   ...|++.++.+..+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence            842               12223333   33566888877766

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.48  E-value=0.63  Score=33.80  Aligned_cols=36  Identities=14%  Similarity=0.092  Sum_probs=29.7

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~  214 (299)
                      .-+++|+|+|+|-+|.=++..+.+.|+ .|+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            456789999999999999999999998 677776653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.46  E-value=0.31  Score=39.90  Aligned_cols=31  Identities=35%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      |+|+|+|..|+.|+..|...|++|+++...+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            8999999999999999999999999997643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.24  E-value=0.17  Score=36.67  Aligned_cols=91  Identities=11%  Similarity=0.074  Sum_probs=55.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCC---CeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFG---LNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g---~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      -+|.|+|+ |-+|+-.++++...+   .++..+..+...-+..  .+...... ..+.+  .+...+.|++|-+.+....
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~~~~~~~-~~~~~--~~~~~~~d~vf~a~p~~~s   77 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GFAESSLR-VGDVD--SFDFSSVGLAFFAAAAEVS   77 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EETTEEEE-CEEGG--GCCGGGCSEEEECSCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--eeccccch-hccch--hhhhccceEEEecCCcchh
Confidence            35899999 999999999997543   3666665543222111  11111111 11000  0112568999999988765


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ....-.....+.++++.+..
T Consensus        78 ~~~~~~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          78 RAHAERARAAGCSVIDLSGA   97 (144)
T ss_dssp             HHHHHHHHHTTCEEEETTCT
T ss_pred             hhhccccccCCceEEeechh
Confidence            55566777778888888655

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.20  E-value=0.35  Score=38.96  Aligned_cols=31  Identities=29%  Similarity=0.326  Sum_probs=26.8

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      +|+|+|+|.+|++++..+...|. +|.+++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999988888878886 69999865

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.10  E-value=0.34  Score=39.57  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      -.|+|+|+|..|+.++..|...|++|+++...+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            349999999999999999999999999998653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.05  E-value=0.58  Score=34.88  Aligned_cols=92  Identities=15%  Similarity=0.187  Sum_probs=55.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCC-CeEEEEe-CC-----chHHHHHHHhc-C--CCEEEeCCCHHHHHHhcCCccEEEEc
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFG-LNVTVLS-TS-----TSKKEEALSLL-G--ADKFVVSSDLEQMKALGKSLDFIIDT  251 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g-~~v~~~~-~~-----~~~~~~~~~~~-g--~~~v~~~~~~~~~~~~~~~~d~v~d~  251 (299)
                      +|.|+|+ |-+|+-.++++..+. .++..+. ++     .+........+ +  ...+....+   ........|++|-+
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dvvf~a   79 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD---VRDFSADVDVVFLA   79 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESC---GGGTCTTCCEEEEC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchh---hhhhhcccceeecc
Confidence            5889998 999999999999874 4654442 21     11222221111 1  111111111   11223678999999


Q ss_pred             CCCchhHHHHHHhcccCcEEEEEcCC
Q 022313          252 ASGDHPFDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       252 ~g~~~~~~~~~~~l~~~G~~v~~g~~  277 (299)
                      .+...........+..+-++++.+.-
T Consensus        80 lp~~~s~~~~~~~~~~~~~vIDlSad  105 (179)
T d2g17a1          80 TAHEVSHDLAPQFLQAGCVVFDLSGA  105 (179)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             ccchhHHHHhhhhhhcCceeeccccc
Confidence            99877455566667777788887654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.44  Score=41.00  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=28.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCC
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTS  213 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~  213 (299)
                      .+|||+|+|++|-.++..+...|. ++.+++.+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            569999999999999999999998 88888765

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.85  E-value=0.67  Score=31.70  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=28.3

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC---CCeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF---GLNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~---g~~v~~~~~~~  214 (299)
                      +..++++|+|+|.+|.-.+.++..+   |.+|.++.+.+
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            3457899999999999888775544   67899998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.79  E-value=0.83  Score=32.87  Aligned_cols=48  Identities=19%  Similarity=0.061  Sum_probs=37.6

Q ss_pred             HHHHHHhhhccCCCCCCEEEEE--cCChHHHHHHHHHHHCCCeEEEEeCCch
Q 022313          166 ITVYTPMMRHKMNQPGKSLGVI--GLGGLGHMAVKFGKAFGLNVTVLSTSTS  215 (299)
Q Consensus       166 ~ta~~al~~~~~~~~g~~vlI~--G~g~~G~~a~~~a~~~g~~v~~~~~~~~  215 (299)
                      .|....+. ... .+++.++|+  |+|.+|+-+++.+...|.+|+++.+.+.
T Consensus        26 ~t~~d~l~-~~~-~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          26 LTPEQVMD-GKK-KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             ECHHHHHH-TCS-CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ECHHHHhc-Ccc-ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            35555553 333 778888887  7789999999999999999999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.52  E-value=0.29  Score=37.75  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=28.2

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCC-------CeEEEEeCCch
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFG-------LNVTVLSTSTS  215 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g-------~~v~~~~~~~~  215 (299)
                      -+|+|+|+|+.|++|+..+...|       .+|.++...+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            37999999999999998888766       47999987653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=85.39  E-value=0.44  Score=38.04  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCChHHHHHHHH-HHHCCCeEEEEeCCc
Q 022313          180 PGKSLGVIGLGGLGHMAVKF-GKAFGLNVTVLSTST  214 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~-a~~~g~~v~~~~~~~  214 (299)
                      ....|+|+|+|+.|+.++.. |+..|.+|.++++.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            34569999999999988765 555799999999774

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=85.28  E-value=0.47  Score=35.04  Aligned_cols=82  Identities=10%  Similarity=0.120  Sum_probs=51.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHC-CCeEEEEe-CCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCCCchhHHH
Q 022313          183 SLGVIGLGGLGHMAVKFGKAF-GLNVTVLS-TSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDA  260 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~-g~~v~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  260 (299)
                      +|.|+|.|.+|...+..++.. +.+++.+. ++++..       ....+....+   .......+|+|+.+++.......
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-------~~~~~~~~~~---~~~~~~~~D~Vvi~tp~~~h~~~   74 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-------TKTPVFDVAD---VDKHADDVDVLFLCMGSATDIPE   74 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-------SSSCEEEGGG---GGGTTTTCSEEEECSCTTTHHHH
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-------cccccccchh---hhhhccccceEEEeCCCcccHHH
Confidence            588999999999888877765 45655544 333211       1112222221   12233568888888887766777


Q ss_pred             HHHhcccCcEEEEE
Q 022313          261 YMSLLKVAGVYVLV  274 (299)
Q Consensus       261 ~~~~l~~~G~~v~~  274 (299)
                      +.++|..|-.+++.
T Consensus        75 a~~aL~aG~~vv~~   88 (170)
T d1f06a1          75 QAPKFAQFACTVDT   88 (170)
T ss_dssp             HHHHHTTTSEEECC
T ss_pred             HHHHHHCCCcEEEe
Confidence            88888887776643

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.24  E-value=0.53  Score=38.38  Aligned_cols=73  Identities=18%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCCch-----HHHHH---HHhcC--CCEEE--eCCCHHHHHHh--cCCcc
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTSTS-----KKEEA---LSLLG--ADKFV--VSSDLEQMKAL--GKSLD  246 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~~-----~~~~~---~~~~g--~~~v~--~~~~~~~~~~~--~~~~d  246 (299)
                      +++||.|+ |.+|...+..+...|.+|+++++...     +...+   .....  ...++  +..+.+.+.+.  ..++|
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D   81 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD   81 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence            67999998 99999999999999999999997432     21111   01111  11222  23334444332  25789


Q ss_pred             EEEEcCCC
Q 022313          247 FIIDTASG  254 (299)
Q Consensus       247 ~v~d~~g~  254 (299)
                      +|+.+++.
T Consensus        82 ~Vih~Aa~   89 (339)
T d1n7ha_          82 EVYNLAAQ   89 (339)
T ss_dssp             EEEECCSC
T ss_pred             hhhhcccc
Confidence            99998875

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.22  E-value=2.3  Score=31.42  Aligned_cols=90  Identities=19%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc---CCCEEEeCCCHHHHHHhcCCccEEEEcCCCchh
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL---GADKFVVSSDLEQMKALGKSLDFIIDTASGDHP  257 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~v~d~~g~~~~  257 (299)
                      +|.|+|+ |-+|+-.++++..... ++..+..+...-+.+.+..   -.+..+...+.+.+   ....|++|-+++... 
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~---~~~~dvvf~a~p~~~-   78 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKV---SKNCDVLFTALPAGA-   78 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHH---HHHCSEEEECCSTTH-
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHh---ccccceEEEccccHH-
Confidence            5889998 9999999999987654 6666654433222221111   12222223333322   246899999999876 


Q ss_pred             HHHHHHhcccCcEEEEEcCC
Q 022313          258 FDAYMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       258 ~~~~~~~l~~~G~~v~~g~~  277 (299)
                      ........ .+-++++...-
T Consensus        79 s~~~~~~~-~~~~VIDlSad   97 (176)
T d1vkna1          79 SYDLVREL-KGVKIIDLGAD   97 (176)
T ss_dssp             HHHHHTTC-CSCEEEESSST
T ss_pred             HHHHHHhh-ccceEEecCcc
Confidence            44444443 56788888655

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=85.22  E-value=0.49  Score=37.36  Aligned_cols=30  Identities=30%  Similarity=0.310  Sum_probs=27.9

Q ss_pred             EEEEcCChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          184 LGVIGLGGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       184 vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      ++|+|+|+.|+.|+..|...|++|.++.+.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            788999999999999999999999999864

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.09  E-value=1.2  Score=34.22  Aligned_cols=94  Identities=14%  Similarity=0.159  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHC--CCeEEEEeCCchHHHHHH---HhcCCC---EEEeCCCHHHHHHh-----cCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAF--GLNVTVLSTSTSKKEEAL---SLLGAD---KFVVSSDLEQMKAL-----GKSL  245 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~--g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~-----~~~~  245 (299)
                      .+.++||-+|.+. |..++.+|+.+  +.+++.++.+++..+.+.   ++.|..   .++..+..+.+.++     ...|
T Consensus        55 ~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          55 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            4457888898742 55667777764  569999999887666553   344532   22333333333332     2579


Q ss_pred             cEEEEcCCCch-----hHHHHHHhcccCcEEEE
Q 022313          246 DFIIDTASGDH-----PFDAYMSLLKVAGVYVL  273 (299)
Q Consensus       246 d~v~d~~g~~~-----~~~~~~~~l~~~G~~v~  273 (299)
                      |++|--.....     .+..+++.|++||.++.
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            99986544332     13445567999997653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.89  E-value=0.52  Score=38.66  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             CEE-EEEcC-ChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          182 KSL-GVIGL-GGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       182 ~~v-lI~G~-g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      ++| ||.|+ |-+|...+..+...|++|+++++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            357 99998 9999999999999999999999854

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.28  E-value=0.68  Score=36.15  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      .|+|+|+|.-|+.|+..+.+.|+++.++..+.
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            38899999999999999999999999997653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.11  E-value=1.4  Score=31.71  Aligned_cols=71  Identities=17%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHhc-------CCC-EEEeCCCHHHHHHhcCCccEEEE
Q 022313          180 PGKSLGVIGLGGLGHMAVKFGKAFGL-NVTVLSTSTSKKEEALSLL-------GAD-KFVVSSDLEQMKALGKSLDFIID  250 (299)
Q Consensus       180 ~g~~vlI~G~g~~G~~a~~~a~~~g~-~v~~~~~~~~~~~~~~~~~-------g~~-~v~~~~~~~~~~~~~~~~d~v~d  250 (299)
                      |..+|-|+|+|.+|...+.++...+. ++.+++.++++.+-....+       +.. .+....+.    +...+.|+|+-
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~----~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY----DDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG----GGGTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccc----cccCCCcEEEE
Confidence            45689999999999888888887776 8888888776543221111       211 22211211    12367999999


Q ss_pred             cCCC
Q 022313          251 TASG  254 (299)
Q Consensus       251 ~~g~  254 (299)
                      +.|.
T Consensus        78 tag~   81 (150)
T d1t2da1          78 TAGF   81 (150)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            8883

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=84.08  E-value=0.78  Score=36.93  Aligned_cols=32  Identities=22%  Similarity=0.136  Sum_probs=27.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS  213 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~  213 (299)
                      ++|||.|+ |.+|...+..+...|..+++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            47999998 999999999999889888776543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=2.9  Score=32.90  Aligned_cols=97  Identities=15%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHH----HC-C--CeEEEEeCCchHHHHHHHhcCC----C-EEEe--CCCHHHH-HH---
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGK----AF-G--LNVTVLSTSTSKKEEALSLLGA----D-KFVV--SSDLEQM-KA---  240 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~----~~-g--~~v~~~~~~~~~~~~~~~~~g~----~-~v~~--~~~~~~~-~~---  240 (299)
                      ++.-+||=+|+|. |..+..+++    .. +  .++++++.++.-++.+.+.+..    . ..++  ..+.+.. ..   
T Consensus        39 ~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          39 KSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             CSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            4445788888753 333333332    22 2  2678888888887777554321    1 1111  1122221 11   


Q ss_pred             --hcCCccEEEEcCC-----C-chhHHHHHHhcccCcEEEEEcC
Q 022313          241 --LGKSLDFIIDTAS-----G-DHPFDAYMSLLKVAGVYVLVGF  276 (299)
Q Consensus       241 --~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  276 (299)
                        ..+.||+|+-.-.     . ..+++.+.+.|+|+|.++....
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence              1367999986333     2 2368889999999998877643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=0.2  Score=40.10  Aligned_cols=49  Identities=16%  Similarity=0.064  Sum_probs=34.1

Q ss_pred             ccCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC
Q 022313          175 HKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG  225 (299)
Q Consensus       175 ~~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g  225 (299)
                      .+. .+|.++|=+|+|+ |...+..+.....+|++++-++.-++.+.+.+.
T Consensus        50 ~g~-~~g~~vLDiGcG~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~   98 (263)
T d2g72a1          50 TGE-VSGRTLIDIGSGP-TVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ   98 (263)
T ss_dssp             TSC-SCCSEEEEETCTT-CCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCC-CCCcEEEEeccCC-CHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHh
Confidence            344 6889999899975 434334444445589999999998888754443

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.60  E-value=2.3  Score=32.45  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             CCCCEEEEE-cC---ChHHHHHHHHHHHCCCeEEEEeCCchHHHH------HHHhcCCCEEEeCCCHHHHHHhcCCccEE
Q 022313          179 QPGKSLGVI-GL---GGLGHMAVKFGKAFGLNVTVLSTSTSKKEE------ALSLLGADKFVVSSDLEQMKALGKSLDFI  248 (299)
Q Consensus       179 ~~g~~vlI~-G~---g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~------~~~~~g~~~v~~~~~~~~~~~~~~~~d~v  248 (299)
                      .+..+|+|+ |.   |+=|+++++.++..|++|.++...+.....      +.++++...+ ...+..    ....+|++
T Consensus        38 ~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~dlI  112 (211)
T d2ax3a2          38 LSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVV-EQFEPS----ILNEFDVV  112 (211)
T ss_dssp             CTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEE-SCCCGG----GGGGCSEE
T ss_pred             ccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCccc-cccccc----cccCceEE
Confidence            345677776 53   678899999999999988877654332221      2234444332 222211    12568999


Q ss_pred             EEcCCCc-------hhHHHHHHhcccCcE-EEEEcCC
Q 022313          249 IDTASGD-------HPFDAYMSLLKVAGV-YVLVGFP  277 (299)
Q Consensus       249 ~d~~g~~-------~~~~~~~~~l~~~G~-~v~~g~~  277 (299)
                      +|+.-+.       ..+...++.++.... ++.+=.+
T Consensus       113 IDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiP  149 (211)
T d2ax3a2         113 VDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVP  149 (211)
T ss_dssp             EEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSC
T ss_pred             EEecccCCccccchHHHHHHHHHHHhhccceeeeccC
Confidence            9988542       236667777766654 4444434

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.60  E-value=0.84  Score=31.23  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=28.4

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCC---CeEEEEeCCc
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFG---LNVTVLSTST  214 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g---~~v~~~~~~~  214 (299)
                      +..++++|+|+|.+|.-.+..++.++   .+|+++.+.+
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            45578999999999998887777665   3698888764

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.56  E-value=1.4  Score=30.50  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCh--HH---------HHHHHHHHHCCCeEEEEeCCchHHHHHHHhcC-CCEEE-eCCCHHHHHHh--cCC
Q 022313          180 PGKSLGVIGLGG--LG---------HMAVKFGKAFGLNVTVLSTSTSKKEEALSLLG-ADKFV-VSSDLEQMKAL--GKS  244 (299)
Q Consensus       180 ~g~~vlI~G~g~--~G---------~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~-~~~~~~~~~~~--~~~  244 (299)
                      ..++|||+|+|+  +|         .-++..++..|.+++.+..+++....   .+. +++++ .+-+.+.+.++  .++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVst---d~d~aD~lYfeplt~e~v~~Ii~~E~   79 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVST---DYDTSDRLYFEPVTLEDVLEIVRIEK   79 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTT---STTSSSEEECCCCSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhc---ChhhcCceEEccCCHHHHHHHHHHhC
Confidence            457899999874  44         34555666779999999999887652   222 45554 33445555443  257


Q ss_pred             ccEEEEcCCCchhHHHHHHh
Q 022313          245 LDFIIDTASGDHPFDAYMSL  264 (299)
Q Consensus       245 ~d~v~d~~g~~~~~~~~~~~  264 (299)
                      .|-|+-..|+...++.+.++
T Consensus        80 p~~ii~~~GGQtalnla~~L   99 (121)
T d1a9xa4          80 PKGVIVQYGGQTPLKLARAL   99 (121)
T ss_dssp             CSEEECSSSTHHHHTTHHHH
T ss_pred             CCEEEeehhhhhHHHHHHHH
Confidence            78888888886644444443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=82.82  E-value=0.54  Score=35.56  Aligned_cols=88  Identities=20%  Similarity=0.212  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCCEEEeCCCHHHHHHhcCCccEEEEcCC-----
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTAS-----  253 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v~d~~g-----  253 (299)
                      .++.+||=+|+|. |..+..+     .+++.++.+++-.+.+. +-+... +..+- +.+....+.||+|+..-.     
T Consensus        35 ~~~~~vLDiGcG~-G~~~~~~-----~~~~giD~s~~~~~~a~-~~~~~~-~~~d~-~~l~~~~~~fD~I~~~~~l~h~~  105 (208)
T d1vlma_          35 LPEGRGVEIGVGT-GRFAVPL-----KIKIGVEPSERMAEIAR-KRGVFV-LKGTA-ENLPLKDESFDFALMVTTICFVD  105 (208)
T ss_dssp             CCSSCEEEETCTT-STTHHHH-----TCCEEEESCHHHHHHHH-HTTCEE-EECBT-TBCCSCTTCEEEEEEESCGGGSS
T ss_pred             CCCCeEEEECCCC-ccccccc-----ceEEEEeCChhhccccc-cccccc-ccccc-ccccccccccccccccccccccc
Confidence            5566888899863 4444444     35688999988888874 444432 22221 111112367999986433     


Q ss_pred             C-chhHHHHHHhcccCcEEEEEc
Q 022313          254 G-DHPFDAYMSLLKVAGVYVLVG  275 (299)
Q Consensus       254 ~-~~~~~~~~~~l~~~G~~v~~g  275 (299)
                      . ...++.+.+.|+++|+++..-
T Consensus       106 d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         106 DPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhhhhhcCCCCceEEEEe
Confidence            2 225788899999999988764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.26  E-value=0.76  Score=36.18  Aligned_cols=33  Identities=18%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             CEEEEEcCChHHHHHHHHHHHCCCeEEEEeCCc
Q 022313          182 KSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTST  214 (299)
Q Consensus       182 ~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~~  214 (299)
                      -.++|+|+|+.|+.++..+..+|.+|.++...+
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            358899999999999999999999999998754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.96  E-value=0.85  Score=37.36  Aligned_cols=71  Identities=20%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHHHCCCeEEEEeCC----------chHHHHHHHhc--CCCEEE--eCCCHHHHHHh--cCC
Q 022313          182 KSLGVIGL-GGLGHMAVKFGKAFGLNVTVLSTS----------TSKKEEALSLL--GADKFV--VSSDLEQMKAL--GKS  244 (299)
Q Consensus       182 ~~vlI~G~-g~~G~~a~~~a~~~g~~v~~~~~~----------~~~~~~~~~~~--g~~~v~--~~~~~~~~~~~--~~~  244 (299)
                      ++|||.|+ |-+|...+..+...|.+|+++++.          .+..+.. +.+  ..-.++  +..+.+.+.+.  ...
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   81 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV-QELTGRSVEFEEMDILDQGALQRLFKKYS   81 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHH-HHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHH-HHhcCCCcEEEEeeccccccccccccccc
Confidence            68999998 999999999999999999998631          1222222 121  122333  33455555543  356


Q ss_pred             ccEEEEcCC
Q 022313          245 LDFIIDTAS  253 (299)
Q Consensus       245 ~d~v~d~~g  253 (299)
                      .|+++.+++
T Consensus        82 ~~~i~h~Aa   90 (346)
T d1ek6a_          82 FMAVIHFAG   90 (346)
T ss_dssp             EEEEEECCS
T ss_pred             ccccccccc
Confidence            777777665

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.90  E-value=1  Score=35.22  Aligned_cols=35  Identities=31%  Similarity=0.539  Sum_probs=29.6

Q ss_pred             CCCCEEEEEcCChHHHHHHHHHH-HCCCeEEEEeCC
Q 022313          179 QPGKSLGVIGLGGLGHMAVKFGK-AFGLNVTVLSTS  213 (299)
Q Consensus       179 ~~g~~vlI~G~g~~G~~a~~~a~-~~g~~v~~~~~~  213 (299)
                      -+|++|+|.|.|.+|..+++++. ..|++|+.+..+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            47899999999999999998775 568888887654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=81.48  E-value=1.4  Score=31.28  Aligned_cols=91  Identities=19%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             EEEEEcCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHhc-------C-CCEEEeCCCHHHHHHhcCCccEEEEcC
Q 022313          183 SLGVIGLGGLGHMAVKFGKAFGL--NVTVLSTSTSKKEEALSLL-------G-ADKFVVSSDLEQMKALGKSLDFIIDTA  252 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~~g~--~v~~~~~~~~~~~~~~~~~-------g-~~~v~~~~~~~~~~~~~~~~d~v~d~~  252 (299)
                      +|.|+|+|.+|...+..+...+.  ++.+++.++++.+.....+       + ...+....+.    +...+.|+++-+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~----~~~~dadvvvita   77 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY----ADTANSDIVIITA   77 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG----GGGTTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH----HHhcCCeEEEEEE
Confidence            47888999999998888888774  8889998877654321111       1 2223322222    1236889999998


Q ss_pred             CCc---------------hhHHH---HHHhcccCcEEEEEcCC
Q 022313          253 SGD---------------HPFDA---YMSLLKVAGVYVLVGFP  277 (299)
Q Consensus       253 g~~---------------~~~~~---~~~~l~~~G~~v~~g~~  277 (299)
                      |-+               ..+..   .+....|++.++.+..+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            842               11122   22334578888877665

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.40  E-value=9.1  Score=30.50  Aligned_cols=55  Identities=18%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             cCCCCCCEEEEEcCChHHHHHHHHHHHCCCeEEEEeCC--chHHHHHHHhcCCCEEE
Q 022313          176 KMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVLSTS--TSKKEEALSLLGADKFV  230 (299)
Q Consensus       176 ~~~~~g~~vlI~G~g~~G~~a~~~a~~~g~~v~~~~~~--~~~~~~~~~~~g~~~v~  230 (299)
                      ..+.++++|+...+|.-|.+++..++..|.+++++...  +.......+.+|++.+.
T Consensus        56 g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          56 GTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             TSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEe
Confidence            34467777666677999999999999999965555432  22333333788876664

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.13  E-value=0.79  Score=38.54  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=26.4

Q ss_pred             EEEEEcCChHHHHHHHHHHH------CCCeEEEEeCCc
Q 022313          183 SLGVIGLGGLGHMAVKFGKA------FGLNVTVLSTST  214 (299)
Q Consensus       183 ~vlI~G~g~~G~~a~~~a~~------~g~~v~~~~~~~  214 (299)
                      .|+|+|+|+.|+.|+..+.+      .|.+|.++.+..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            58999999999888766654      688999999764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=80.27  E-value=1  Score=32.39  Aligned_cols=100  Identities=20%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHHHC----CCeEEEEeCCchHHHHHHHhcCCCE--EEeCCCHHHHHHhcCCccEEEEcCCCc
Q 022313          183 SLGVIGL-GGLGHMAVKFGKAF----GLNVTVLSTSTSKKEEALSLLGADK--FVVSSDLEQMKALGKSLDFIIDTASGD  255 (299)
Q Consensus       183 ~vlI~G~-g~~G~~a~~~a~~~----g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~v~d~~g~~  255 (299)
                      +|.|+|+ |-+|+-.++++...    ...+..+..+.......  .++.+.  +....+.+.    -...|++|-|+++.
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~--~~~~~~~~~~~~~~~~~----~~~~DvvF~alp~~   75 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP--NFGKDAGMLHDAFDIES----LKQLDAVITCQGGS   75 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC--CSSSCCCBCEETTCHHH----HTTCSEEEECSCHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc--ccCCcceeeecccchhh----hccccEEEEecCch
Confidence            5889998 99999999865432    23555554442221111  122111  111112111    26789999999987


Q ss_pred             hhHHHHHHhcccC--cEEEEEcCC----CceeeChhhhh
Q 022313          256 HPFDAYMSLLKVA--GVYVLVGFP----SKVKFSPASLN  288 (299)
Q Consensus       256 ~~~~~~~~~l~~~--G~~v~~g~~----~~~~~~~~~l~  288 (299)
                      ......-..+..+  ..+++...-    ..+++-+-++.
T Consensus        76 ~s~~~~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN  114 (147)
T d1mb4a1          76 YTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVN  114 (147)
T ss_dssp             HHHHHHHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHH
T ss_pred             HHHHHhHHHHHcCCceEEEeCCccccccCCceEEeCCcC
Confidence            6333343444444  247888655    44544444433