Citrus Sinensis ID: 022317

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcEEEEEEEcccEEcccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHHHHccccccHHHHEEEHHHHccccEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHEHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccHcccccHHHcccccccccccccccEEEEcc
Coil and Loop (DISEMBL)
MTLAILTKLLLLGLlepvidqnlYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILElfwtkgaenhghgssgttthnsIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGivmkdrgpvfvaAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVwgkskdhkspspstdehlppaeqtnntgsngkenfghevtkidv
Flexible Loop (DISEMBL)
MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSpspstdehlppaeqtnntgsngkenfghevtkidv
Low Complexity Region (SEG)
MTlailtkllllgllEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLgriigaiiiiggLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV
Disordered region (IsUnstruct)
**LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAEN*********THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG******************************************
Disordered Region (DISOPRED)
MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILEL*******************NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW****************************************I**
Disordered Region (DISEMBL)
MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK*****************AEQTNNTGSNGKENFGHEVTKIDV
Disordered Region (DISPRO)
MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWT***************HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9ZUS1	380	WAT1-related protein At2g	yes	no	0.979	0.771	0.643	1e-111
O80638	374	WAT1-related protein At2g	no	no	0.916	0.732	0.610	7e-95
F4IQX1	336	WAT1-related protein At2g	no	no	0.892	0.794	0.618	3e-91
Q501F8	373	WAT1-related protein At4g	no	no	0.869	0.697	0.563	1e-78
Q9SUF1	384	WAT1-related protein At4g	no	no	0.876	0.682	0.505	8e-77
Q9LPF1	370	WAT1-related protein At1g	no	no	0.966	0.781	0.498	8e-76
F4HZQ7	389	WAT1-related protein At1g	no	no	0.956	0.735	0.483	5e-74
Q9FNA5	377	WAT1-related protein At5g	no	no	0.872	0.692	0.494	2e-71
Q9FL41	402	WAT1-related protein At5g	no	no	0.959	0.713	0.449	9e-69
F4IJ08	394	WAT1-related protein At2g	no	no	0.929	0.705	0.409	1e-61

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 7/300 (2%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL I  K+ LLGLLEPVIDQNLY++GMKYTTATFA AMYN+LPAITF++A+I  LE V 
Sbjct: 73  MTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVK 132

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           L+ IRS  KV+GTLATV GAM+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA++
Sbjct: 133 LRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVL 190

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           +T GCFS++ F+ILQAITL+ YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WD
Sbjct: 191 VTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWD 250

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+ + YSGI+CS L YY+ G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR
Sbjct: 251 TKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGR 310

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPS--PSTDEHLPPAEQTNNTGSNGKENFGHEVTKID 298
           ++GA++I  GLYLV+WGK KD+K  S     DE   P  + +    NGK+N  HEV  I 
Sbjct: 311 VLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDESAQPKLELSG---NGKDNVDHEVITIS 367

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  347 bits (889), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 168/275 (61%), Positives = 211/275 (76%), Gaps = 1/275 (0%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL+I  K+LLLGLLEP IDQNLY+ GMKYT+ATF AAM N+LPA  F+MAWI RLE VN
Sbjct: 66  MTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVN 125

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           +K I S AK++GT+ TV GAM+MT++KGP++ L W    + H   S+     +  KGA +
Sbjct: 126 VKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASL 185

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           I  GC  W+ FI LQAITLK+YP ELSLTA+ICF G++E T+ AL +ERG  S WAIH D
Sbjct: 186 IAIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLD 245

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           +KL+A+VY G+ICSG+ YY+QG++MK RGPVFV AF+PL MVIVAI+ +IILAE M+LGR
Sbjct: 246 SKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGR 305

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPST-DEHLP 274
           I+GAI+I+ GLY V+WGKSKD  S S S  D+ LP
Sbjct: 306 ILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELP 340

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQX1|WTR12_ARATH WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1

 Score =  335 bits (859), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 170/275 (61%), Positives = 208/275 (75%), Gaps = 8/275 (2%)

Query: 16  EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
            PVI QNL+ +GMKYTTATFA A+YN LPA+TF++A I RLE+V  +SIRS AKV+GT+ 
Sbjct: 61  NPVIAQNLFNLGMKYTTATFAIALYNTLPAVTFILALIFRLESVKFQSIRSAAKVVGTVT 120

Query: 76  TVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQ 135
           TV G MVMTL+KGP L+LFWTKG       + GT  H+SIKGA+++T GCFS++ F+ILQ
Sbjct: 121 TVGGIMVMTLVKGPALDLFWTKGPS--AQNTVGTDIHSSIKGAVLVTIGCFSYACFMILQ 178

Query: 136 AITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195
           AITLK YPAELSL  WIC  GT+EG + AL+ME+G  S+WAI WDTKL+   YSGI+CS 
Sbjct: 179 AITLKTYPAELSLATWICLIGTIEGVVVALVMEKGNPSVWAIGWDTKLLTITYSGIVCSA 238

Query: 196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255
           L YYI G+VMK RGPVFV AF PLCM++VAIMS+II  EQMYLGR +GA +I  GLYLV+
Sbjct: 239 LGYYIGGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVI 298

Query: 256 WGKSKDHKSPS-PSTDEHLPPAEQTNNTGSNGKEN 289
           WGK+KD++ PS P  D+ L  A     T S  KE 
Sbjct: 299 WGKAKDYEYPSTPQIDDDLAQA-----TTSKQKEQ 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 192/266 (72%), Gaps = 6/266 (2%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT  +  ++L LG LEP++DQNLY+IGMK T+AT+++A  N LPAITF+MA I R+E VN
Sbjct: 69  MTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETVN 128

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSG----TTTHNSIK 116
           LK  RSLAKVIGT  TV GAMVMTL KGP +ELF T  +  HG GSSG    TT  N + 
Sbjct: 129 LKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHG-GSSGTSSETTDQNWVT 187

Query: 117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA 176
           G L +     +W+ F ILQ+ TLK YPAELSL  WIC  GTV  T+A+LIM R   S W 
Sbjct: 188 GTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVR-DVSAWK 246

Query: 177 IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQM 236
           +  D+  +A+VYSG++CSG+ YYIQ IV+++RGPVF  +FSP+CM+I A +  ++LAE++
Sbjct: 247 VGMDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKI 306

Query: 237 YLGRIIGAIIIIGGLYLVVWGKSKDH 262
           +LG IIGAI I+ GLY VVWGK+KD 
Sbjct: 307 HLGSIIGAIFIVFGLYSVVWGKAKDE 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  287 bits (734), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 197/265 (74%), Gaps = 3/265 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL++L K++ LG LEPV+DQ   ++GM  T+AT+ +A+ NILP++TF++AWI+R+E VN
Sbjct: 71  MTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVN 130

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKG--AENHGHGSSGTTTHNSIKGA 118
           +  +RS AK+IGTL  + GA+VMTL KGP++ L W+     + +GH ++    +N + G 
Sbjct: 131 IAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGT 190

Query: 119 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIH 178
           L+I  GC +WS F +LQ+IT+K YPA+LSL+A IC  G V+    AL++ER   S WA+ 
Sbjct: 191 LLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVER-HPSGWAVG 249

Query: 179 WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYL 238
           WD +L A +Y+GI+ SG+TYY+QG+VMK RGPVFV AF+PLCM++VA++++ IL EQ++ 
Sbjct: 250 WDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHF 309

Query: 239 GRIIGAIIIIGGLYLVVWGKSKDHK 263
           G +IG  +I  GLY+VVWGK KD++
Sbjct: 310 GCVIGGAVIAAGLYMVVWGKGKDYE 334

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  283 bits (725), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 148/297 (49%), Positives = 202/297 (68%), Gaps = 8/297 (2%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTLAI  +LL LG+LEP++DQNLY+IG+K T+A++ +A  N LPA+TF++A I RLE VN
Sbjct: 69  MTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETVN 128

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAEN--HGHGSSGTTTHNSIKGA 118
            + + S+AKV+GT+ TV GAM+MTL KGP +E+   K A N  HG  SS  T  + + G 
Sbjct: 129 FRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEI--VKAAHNSFHGGSSSTPTGQHWVLGT 186

Query: 119 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIH 178
           + I     +W+ F ILQ+ TLK YPAELSL   IC  GT+   +A+LIM R   S W I 
Sbjct: 187 IAIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVR-DPSAWKIG 245

Query: 179 WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYL 238
            D+  +A+VYSG++CSG+ YYIQ IV+K RGPVF  +FSP+CM+I A +  ++LAE+++L
Sbjct: 246 MDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHL 305

Query: 239 GRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVT 295
           G IIGA+ I+ GLY VVWGKSKD  +P    DE +    Q     +  K+  GH+V+
Sbjct: 306 GSIIGAVFIVLGLYSVVWGKSKDEVNP---LDEKIVAKSQELPITNVVKQTNGHDVS 359

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/296 (48%), Positives = 194/296 (65%), Gaps = 10/296 (3%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT  I  ++ LLG +EPV+DQNLY++GM YT+ATFA+A  N+LPAITF++A I RLE+VN
Sbjct: 69  MTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVN 128

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFW---------TKGAENHGHGSSGTTT 111
            K +RS+AKV+GT+ TV+GA++MTL KGPI++                 +HG   +    
Sbjct: 129 FKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMD 188

Query: 112 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGK 171
            + I G LM+    F W+ F ILQ+ TLK YPAELSLT  IC  GT+EGT  +L+  R  
Sbjct: 189 KHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVR-D 247

Query: 172 ASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII 231
            S W I +D+ L A+ YSG+ICSG+ YY+QG+VM++RGPVFVA F+PLC+VI A +  ++
Sbjct: 248 LSAWKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVV 307

Query: 232 LAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGK 287
           L+E ++LG +IG + II GLY VVWGK KD +      D    P +        GK
Sbjct: 308 LSESIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDEDCKGLPIKSPVKPVDTGK 363

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 187/265 (70%), Gaps = 4/265 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           +T  IL ++ +L L EPV++QNLY+ GMK TTATF +A+ N LPA+TF+MA + +LE V 
Sbjct: 66  LTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEKVT 125

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWT---KGAENHGHGSSGTTTHNSIKG 117
           ++   S AK++GT+  + GAM+MT +KG ++EL WT   +G   H H        +  +G
Sbjct: 126 IERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIARG 185

Query: 118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAI 177
           ++M+ A CFSWS +IILQA  L  Y AELSLTA +C  G +E T+  LI ER   S+W I
Sbjct: 186 SIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSVWKI 245

Query: 178 HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMY 237
           + D  L+AS+Y G++ SGL YY+ G   K+RGPVFV+AF+PL MV+VAI+ST +  E++Y
Sbjct: 246 NPDVTLLASIYGGLV-SGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKVY 304

Query: 238 LGRIIGAIIIIGGLYLVVWGKSKDH 262
           +GR+IG+++I+ G+YLV+WGKSKD 
Sbjct: 305 VGRVIGSVVIVIGIYLVLWGKSKDK 329

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  260 bits (664), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 202/296 (68%), Gaps = 9/296 (3%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           +T +I  +L +LGLL PVIDQN Y++G+KYT+ TF+ AM N+LPA+TF++A + R+E ++
Sbjct: 76  ITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLD 135

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTK--GAENHGHGSSGTTTHNS---- 114
           LK +   AK+ GT+ TVAGAM+MT+ KGPI+ELFWTK    ++  H ++ ++ ++S    
Sbjct: 136 LKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKE 195

Query: 115 -IKGALMITAGCFSWSFFIILQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKA 172
            +KG++++     +W+   +LQA  LK Y   +LSLT  ICF GT++      +ME    
Sbjct: 196 FLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNP- 254

Query: 173 SIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIIL 232
           S W I WD  L+A+ YSGI+ S ++YY+QGIVMK RGPVF  AFSPL MVIVA+M + +L
Sbjct: 255 SAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVL 314

Query: 233 AEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKE 288
           AE+++LG +IGA++I+ GLY V+WGK K+++       +    ++ T +  +NG +
Sbjct: 315 AEKIFLGGVIGAVLIVIGLYAVLWGKQKENQVTICELAKIDSNSKVTEDVEANGSK 370

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/286 (40%), Positives = 185/286 (64%), Gaps = 8/286 (2%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT  I  ++ LL LL PVIDQNLY+IG+K T+ TF++A+ NI+PAIT ++A + R+E V 
Sbjct: 69  MTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVE 128

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           ++ +R L KV+GTL TV G+++M   KGP +  F      +H   +S   T + +K A+ 
Sbjct: 129 MRKVRCLVKVMGTLVTVVGSILMIFYKGPFINFF-----RSHLTAASSPPTADYLKAAVF 183

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           +     SW+ F +LQA TLK Y A LS++  +CF GT++    A +ME   +++  I +D
Sbjct: 184 LLLASLSWASFFVLQAATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSAL-NIGFD 242

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
             L+AS Y+GI+ S + YY+QG++M+ +GPVFV AF+PL +VIV+IMS  +L + +YLG 
Sbjct: 243 MNLLASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLGG 302

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNG 286
           +IG ++++ G+Y V+WGK  D        ++++   +    +G+NG
Sbjct: 303 VIGVVVLMVGVYAVLWGKHVDDDGEETRHEDNVVAVKCC--SGNNG 346

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
359481510	396	PREDICTED: auxin-induced protein 5NG4-li	1.0	0.755	0.698	1e-122
297741549	383	unnamed protein product [Vitis vinifera]	0.966	0.754	0.712	1e-121
224087387	348	predicted protein [Populus trichocarpa]	0.936	0.804	0.710	1e-115
356570708	383	PREDICTED: auxin-induced protein 5NG4-li	0.963	0.751	0.674	1e-111
356505132	377	PREDICTED: auxin-induced protein 5NG4-li	0.966	0.766	0.653	1e-110
15224291	380	nodulin MtN21 /EamA-like transporter-lik	0.979	0.771	0.643	1e-109
21553757	362	nodulin-like protein [Arabidopsis thalia	0.986	0.814	0.640	1e-109
388498302	379	unknown [Medicago truncatula]	0.976	0.770	0.637	1e-108
449502577	368	PREDICTED: auxin-induced protein 5NG4-li	0.939	0.763	0.665	1e-107
357510463	379	Auxin-induced protein 5NG4 [Medicago tru	0.976	0.770	0.633	1e-107

>gi|359481510|ref|XP_002274909.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/299 (69%), Positives = 247/299 (82%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT +I TKL+LL LLEPVIDQNLY+ G+KYTTATFAAAMYNILPAITFLMA I  LE V 
Sbjct: 77  MTFSIFTKLMLLSLLEPVIDQNLYYFGLKYTTATFAAAMYNILPAITFLMACIFGLEKVT 136

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           LKSI S AKV+GT+ATVAGAM+MTL+KGP++EL WTKG  N G    GT  H+SIKG+LM
Sbjct: 137 LKSIHSQAKVVGTVATVAGAMLMTLVKGPVIELIWTKGRNNQGVKGGGTNIHDSIKGSLM 196

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           ITAGCFSW+ FIILQAITLK YPAELSLTAWIC  GT +GT+ AL+MERGK S+W+IHWD
Sbjct: 197 ITAGCFSWACFIILQAITLKTYPAELSLTAWICLLGTAQGTIVALVMERGKTSVWSIHWD 256

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TK +A++YSGI+CSGL YYIQG+VMKDRGPVFV AF+PL M+IVA+MS+ ILAEQMYLGR
Sbjct: 257 TKFLAALYSGIVCSGLAYYIQGVVMKDRGPVFVTAFNPLSMIIVAVMSSFILAEQMYLGR 316

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKIDV 299
           +IGAI+I+ GLY VVWGKSK++KS SPSTD  +   +Q  +  S+  EN   EV  ++V
Sbjct: 317 VIGAIVIVAGLYFVVWGKSKEYKSGSPSTDGQMVQDKQMTDASSDSNENSTPEVITLNV 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741549|emb|CBI32681.3| unnamed protein product [Vitis vinifera]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 242/289 (83%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT +I TKL+LL LLEPVIDQNLY+ G+KYTTATFAAAMYNILPAITFLMA I  LE V 
Sbjct: 83  MTFSIFTKLMLLSLLEPVIDQNLYYFGLKYTTATFAAAMYNILPAITFLMACIFGLEKVT 142

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           LKSI S AKV+GT+ATVAGAM+MTL+KGP++EL WTKG  N G    GT  H+SIKG+LM
Sbjct: 143 LKSIHSQAKVVGTVATVAGAMLMTLVKGPVIELIWTKGRNNQGVKGGGTNIHDSIKGSLM 202

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           ITAGCFSW+ FIILQAITLK YPAELSLTAWIC  GT +GT+ AL+MERGK S+W+IHWD
Sbjct: 203 ITAGCFSWACFIILQAITLKTYPAELSLTAWICLLGTAQGTIVALVMERGKTSVWSIHWD 262

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TK +A++YSGI+CSGL YYIQG+VMKDRGPVFV AF+PL M+IVA+MS+ ILAEQMYLGR
Sbjct: 263 TKFLAALYSGIVCSGLAYYIQGVVMKDRGPVFVTAFNPLSMIIVAVMSSFILAEQMYLGR 322

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKEN 289
           +IGAI+I+ GLY VVWGKSK++KS SPSTD  +   +Q  +  S+  EN
Sbjct: 323 VIGAIVIVAGLYFVVWGKSKEYKSGSPSTDGQMVQDKQMTDASSDSNEN 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087387|ref|XP_002308146.1| predicted protein [Populus trichocarpa] gi|222854122|gb|EEE91669.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/280 (71%), Positives = 235/280 (83%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL+I  KL+ L LLEPVIDQNLYF+GMKYTTATFAAA+ N+LPAITF++AWI+RLE V 
Sbjct: 67  MTLSIFIKLVALSLLEPVIDQNLYFLGMKYTTATFAAAIVNVLPAITFIIAWIVRLEKVK 126

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           + S+ S AK+ GT+ATVAGAM+MTL+KGP++E F  KG   H +G+ G   H+SIKGALM
Sbjct: 127 IGSLHSQAKLAGTIATVAGAMLMTLMKGPLIEFFRIKGNAYHENGTGGIDLHSSIKGALM 186

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           IT GCFSW+ F+ILQAITLK+YPAELSLTAWIC  GT+EG + AL+ E GK S+WAI+WD
Sbjct: 187 ITVGCFSWACFMILQAITLKSYPAELSLTAWICLLGTIEGAVVALVAENGKPSVWAINWD 246

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
            KL+A+VYSGI CSGL YYIQGIVMKDRGPVFV AFSPLCMVIVA+MS+II AEQMYLGR
Sbjct: 247 MKLLAAVYSGIFCSGLAYYIQGIVMKDRGPVFVTAFSPLCMVIVAVMSSIIWAEQMYLGR 306

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTN 280
           I+GAIII+ GLYLVVWGKSKD+K+ SP  DE   P +QT 
Sbjct: 307 ILGAIIIVAGLYLVVWGKSKDYKTSSPPADEQTIPVKQTT 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570708|ref|XP_003553527.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/289 (67%), Positives = 235/289 (81%), Gaps = 1/289 (0%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT +I  K+++L LLEPVIDQNLYF+GMKYTTATFA +MYN+LPAITF+MAWI RLE V 
Sbjct: 72  MTFSIFMKIMILSLLEPVIDQNLYFLGMKYTTATFAVSMYNVLPAITFVMAWIFRLEKVK 131

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           LKSIRS AKV+GTLATVAGAMVMTLIKGP+L+LF T  +  H   + G    ++IKG++M
Sbjct: 132 LKSIRSQAKVVGTLATVAGAMVMTLIKGPVLDLFGTHTSNTHNQQNGGVNLQHAIKGSVM 191

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           IT GCFS + F+ILQAIT++AYPAELSLTAWIC  GTVEG + AL+MER   S W++ WD
Sbjct: 192 ITIGCFSCACFMILQAITIEAYPAELSLTAWICLLGTVEGGVVALVMERKNLSAWSLQWD 251

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+A+VYSGI+CSG+ YYIQG VMKDRGPVFV  F+PLCMVIVAIM +  LAE MYLGR
Sbjct: 252 TKLLAAVYSGIVCSGMAYYIQGAVMKDRGPVFVTTFNPLCMVIVAIMGSFFLAEIMYLGR 311

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKEN 289
            +GAI+II GLYLVVWGKS+D++S SP T EH+  ++QT    +NGKE 
Sbjct: 312 AVGAIVIILGLYLVVWGKSQDYESSSPITKEHILASKQTVEE-NNGKEE 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505132|ref|XP_003521346.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/294 (65%), Positives = 235/294 (79%), Gaps = 5/294 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT +I  K+++L LLEPVIDQNLYF+GMKYTTATFA +MYN+LPAITF+MAWI+RLE V 
Sbjct: 72  MTFSIFMKIMILSLLEPVIDQNLYFLGMKYTTATFAVSMYNVLPAITFVMAWILRLEKVK 131

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           LKSIRS AKV+GTLATV GAMVMTLIKGPIL+LF T  +  H   + G    ++IKG++M
Sbjct: 132 LKSIRSQAKVVGTLATVVGAMVMTLIKGPILDLFGTHASSTHNQQNGGVNLQHAIKGSVM 191

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           IT GCFS + F+ILQAIT++AYPAELSLTAWIC  GTVEG + AL+MER   S W++ WD
Sbjct: 192 ITIGCFSCACFMILQAITIEAYPAELSLTAWICLLGTVEGGVVALVMERKNLSAWSLQWD 251

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+A+VYSGI+CSG+ YYIQG VMKDRGPVFV  F+PLCMVIVAIM +  LAE MYLGR
Sbjct: 252 TKLLAAVYSGIVCSGMAYYIQGAVMKDRGPVFVTTFNPLCMVIVAIMGSFFLAEIMYLGR 311

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEV 294
           ++GAI+II GLYLVVWGKS D++S +  T +H  P++QT       +E+  H+V
Sbjct: 312 VVGAIVIILGLYLVVWGKSNDYESSNSITKKHTLPSKQTVE-----EEHSNHDV 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224291|ref|NP_181282.1| nodulin MtN21 /EamA-like transporter-like protein [Arabidopsis thaliana] gi|4056506|gb|AAC98072.1| nodulin-like protein [Arabidopsis thaliana] gi|14334858|gb|AAK59607.1| putative nodulin protein [Arabidopsis thaliana] gi|14994253|gb|AAK73261.1| nodulin-like protein [Arabidopsis thaliana] gi|17104641|gb|AAL34209.1| putative nodulin protein [Arabidopsis thaliana] gi|330254309|gb|AEC09403.1| nodulin MtN21 /EamA-like transporter-like protein [Arabidopsis thaliana]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 7/300 (2%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL I  K+ LLGLLEPVIDQNLY++GMKYTTATFA AMYN+LPAITF++A+I  LE V 
Sbjct: 73  MTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVK 132

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           L+ IRS  KV+GTLATV GAM+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA++
Sbjct: 133 LRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVL 190

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           +T GCFS++ F+ILQAITL+ YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WD
Sbjct: 191 VTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWD 250

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+ + YSGI+CS L YY+ G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR
Sbjct: 251 TKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGR 310

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPS--PSTDEHLPPAEQTNNTGSNGKENFGHEVTKID 298
           ++GA++I  GLYLV+WGK KD+K  S     DE   P  + +    NGK+N  HEV  I 
Sbjct: 311 VLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDESAQPKLELSG---NGKDNVDHEVITIS 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553757|gb|AAM62850.1| nodulin-like protein [Arabidopsis thaliana]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/298 (64%), Positives = 234/298 (78%), Gaps = 3/298 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL I  K+ LLGLLEPVIDQNLY++GMKYTTATFA AMYN+LPAITF++A+I  LE V 
Sbjct: 55  MTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVK 114

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           L+ IRS  KV+GTLATV GAM+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA++
Sbjct: 115 LRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVL 172

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           +T GCFS++ F+ILQAITL+ YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WD
Sbjct: 173 VTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWD 232

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+ + YSGI+CS L YY+ G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYLGR
Sbjct: 233 TKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGR 292

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKID 298
           ++GA++I  GLYLV+WGK KD+K  S    +      +   +G NGK+N  HEV  I 
Sbjct: 293 VLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDKSAQPKLELSG-NGKDNVDHEVITIS 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498302|gb|AFK37217.1| unknown [Medicago truncatula]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/295 (63%), Positives = 238/295 (80%), Gaps = 3/295 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL+I  KL+ L +LEPVIDQNLYF+GMKYTTATFA AM+N+LPAITF++AWI+++E + 
Sbjct: 72  MTLSIFLKLVALSVLEPVIDQNLYFLGMKYTTATFAVAMFNVLPAITFVVAWILKMEKIK 131

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           ++S+ S AK++GT+ATVAGAMVMTLIKGPIL LF    +      + G    +++KG++M
Sbjct: 132 MRSVHSQAKIVGTIATVAGAMVMTLIKGPILNLFGIHESSAQIQHNGGVNLQHAVKGSIM 191

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           IT GCFS + F ILQA+TL+AYPAELSLTAWIC  GTVEG + ALIMERG+ S+W++ WD
Sbjct: 192 ITIGCFSCACFTILQAVTLEAYPAELSLTAWICLLGTVEGGIVALIMERGEPSVWSLSWD 251

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+A+VYSGI+CSG+ YYIQG+VM+ RGPVFV  F+PLCMVIVAIMS  ILAE++YLGR
Sbjct: 252 TKLLAAVYSGIVCSGMAYYIQGVVMRYRGPVFVTTFNPLCMVIVAIMSPFILAEKIYLGR 311

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENF-GHEV 294
           +IGA++II GLYLVVWGKSKD+  PSP   + + PA+QT    +N KE F  HEV
Sbjct: 312 VIGAVVIILGLYLVVWGKSKDYDRPSPIIKDEILPAKQT--IENNDKEKFHSHEV 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502577|ref|XP_004161682.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/284 (66%), Positives = 230/284 (80%), Gaps = 3/284 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MT+ +  KL++L LLEPVIDQNLYF+GMKYTTATFAAAM NILPAITF+MAWI+RLE V 
Sbjct: 65  MTIPVFAKLMVLSLLEPVIDQNLYFMGMKYTTATFAAAMCNILPAITFVMAWILRLEKVR 124

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           +KSIRS AK++GT+ATV GAM+MTL+KGPI+ELFW K   N+       +  ++IKG++M
Sbjct: 125 IKSIRSQAKIVGTVATVGGAMIMTLMKGPIVELFWVKERANNPQQRGEISLQHTIKGSIM 184

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           IT GCFSW+ F+ILQAITLKAYPAELSLTAWIC  GT EGT+ AL+MERG  ++W+I W 
Sbjct: 185 ITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVVALVMERGNPAVWSITWG 244

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+A+VYSGI CSGL YYIQG+VMKD+GPVFV AFSPL MVIVAIMS+ IL E++Y GR
Sbjct: 245 TKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGR 304

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAE--QTNNT 282
           ++GA++II GLYLVVWGK+KD    S S D  LP  +  + N T
Sbjct: 305 VLGAVVIIVGLYLVVWGKNKDENC-SSSEDLKLPTKQILEDNKT 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510463|ref|XP_003625520.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355500535|gb|AES81738.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/295 (63%), Positives = 237/295 (80%), Gaps = 3/295 (1%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           MTL+I  KL+ L +LEPVIDQNLYF+GMKYTTATFA AM+N+LPAITF++AWI+++E + 
Sbjct: 72  MTLSIFLKLVALSVLEPVIDQNLYFLGMKYTTATFAVAMFNVLPAITFVVAWILKMEKIK 131

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALM 120
           ++S+ S AK++GT+ATVAGAMVMTLIKGPIL LF    +      + G    +++KG++M
Sbjct: 132 MRSVHSQAKIVGTIATVAGAMVMTLIKGPILNLFGIHESSAQIQHNGGVNLQHAVKGSIM 191

Query: 121 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD 180
           IT GCFS + F ILQA+TL+ YPAELSLTAWIC  GTVEG + ALIMERG+ S+W++ WD
Sbjct: 192 ITIGCFSCACFTILQAVTLETYPAELSLTAWICLLGTVEGGIVALIMERGEPSVWSLSWD 251

Query: 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240
           TKL+A+VYSGI+CSG+ YYIQG+VM+ RGPVFV  F+PLCMVIVAIMS  ILAE++YLGR
Sbjct: 252 TKLLAAVYSGIVCSGMAYYIQGVVMRYRGPVFVTTFNPLCMVIVAIMSPFILAEKIYLGR 311

Query: 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENF-GHEV 294
           +IGA++II GLYLVVWGKSKD+  PSP   + + PA+QT    +N KE F  HEV
Sbjct: 312 VIGAVVIILGLYLVVWGKSKDYDRPSPIIKDEILPAKQT--IENNDKEKFHSHEV 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.926	0.728	0.623	2.7e-93
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.862	0.767	0.613	1.3e-84
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.866	0.692	0.573	2.7e-77
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.816	0.654	0.544	1.9e-67
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.862	0.663	0.494	9.4e-66
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.826	0.643	0.48	2e-65
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.916	0.740	0.468	2e-63
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.819	0.649	0.481	1.2e-60
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.822	0.611	0.458	2.7e-59
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.876	0.664	0.392	1.9e-51

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 177/284 (62%), Positives = 214/284 (75%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EPVIDQNLY++GMKYTTATFA AMYN+LPAITF++A+I  LE V L+ IRS  KV+GTLA
Sbjct:    88 EPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCIRSTGKVVGTLA 147

Query:    76 TVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQ 135
             TV GAM+MTL+KGP+L+LFWTKG     H ++GT  H++IKGA+++T GCFS++ F+ILQ
Sbjct:   148 TVGGAMIMTLVKGPVLDLFWTKGVS--AHNTAGTDIHSAIKGAVLVTIGCFSYACFMILQ 205

Query:   136 AITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195
             AITL+ YPAELSLTAWIC  GT+EGT  AL+ME+G  S WAI WDTKL+ + YSGI+CS 
Sbjct:   206 AITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKLLTATYSGIVCSA 265

Query:   196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVV 255
             L YY+ G+VMK RGPVFV AFSPLCM+IVAIMSTII AEQMYL            LYLV+
Sbjct:   266 LAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVI 325

Query:   256 WGKSKDHK--SPSPSTDEHLPPAEQTNNTGSNGKENFGHEVTKI 297
             WGK KD+K  S     DE   P  + +    NGK+N  HEV  I
Sbjct:   326 WGKGKDYKYNSTLQLDDESAQPKLELSG---NGKDNVDHEVITI 366

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 160/261 (61%), Positives = 196/261 (75%)

Query:    17 PVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLAT 76
             PVI QNL+ +GMKYTTATFA A+YN LPA+TF++A I RLE+V  +SIRS AKV+GT+ T
Sbjct:    62 PVIAQNLFNLGMKYTTATFAIALYNTLPAVTFILALIFRLESVKFQSIRSAAKVVGTVTT 121

Query:    77 VAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQA 136
             V G MVMTL+KGP L+LFWTKG       + GT  H+SIKGA+++T GCFS++ F+ILQA
Sbjct:   122 VGGIMVMTLVKGPALDLFWTKGPS--AQNTVGTDIHSSIKGAVLVTIGCFSYACFMILQA 179

Query:   137 ITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196
             ITLK YPAELSL  WIC  GT+EG + AL+ME+G  S+WAI WDTKL+   YSGI+CS L
Sbjct:   180 ITLKTYPAELSLATWICLIGTIEGVVVALVMEKGNPSVWAIGWDTKLLTITYSGIVCSAL 239

Query:   197 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVW 256
              YYI G+VMK RGPVFV AF PLCM++VAIMS+II  EQMYL            LYLV+W
Sbjct:   240 GYYIGGVVMKTRGPVFVTAFKPLCMIVVAIMSSIIFDEQMYLGRALGATVICVGLYLVIW 299

Query:   257 GKSKDHKSPS-PSTDEHLPPA 276
             GK+KD++ PS P  D+ L  A
Sbjct:   300 GKAKDYEYPSTPQIDDDLAQA 320

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 149/260 (57%), Positives = 187/260 (71%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EP IDQNLY+ GMKYT+ATF AAM N+LPA  F+MAWI RLE VN+K I S AK++GT+ 
Sbjct:    81 EPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAKILGTIV 140

Query:    76 TVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQ 135
             TV GAM+MT++KGP++ L W    + H   S+     +  KGA +I  GC  W+ FI LQ
Sbjct:   141 TVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWAGFINLQ 200

Query:   136 AITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195
             AITLK+YP ELSLTA+ICF G++E T+ AL +ERG  S WAIH D+KL+A+VY G+ICSG
Sbjct:   201 AITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDSKLLAAVYGGVICSG 260

Query:   196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVV 255
             + YY+QG++MK RGPVFV AF+PL MVIVAI+ +IILAE M+L            LY V+
Sbjct:   261 IGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVL 320

Query:   256 WGKSKDHKSPSPST-DEHLP 274
             WGKSKD  S S S  D+ LP
Sbjct:   321 WGKSKDEPSSSFSDMDKELP 340

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 136/250 (54%), Positives = 174/250 (69%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EP++DQNLY+IGMK T+AT+++A  N LPAITF+MA I R+E VNLK  RSLAKVIGT  
Sbjct:    84 EPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETVNLKKTRSLAKVIGTAI 143

Query:    76 TVAGAMVMTLIKGPILELFWTKGAENHGHGSSGT----TTHNSIKGALMITAGCFSWSFF 131
             TV GAMVMTL KGP +ELF T  +  HG GSSGT    T  N + G L +     +W+ F
Sbjct:   144 TVGGAMVMTLYKGPAIELFKTAHSSLHG-GSSGTSSETTDQNWVTGTLAVMGSITTWAGF 202

Query:   132 IILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 191
              ILQ+ TLK YPAELSL  WIC  GTV  T+A+LIM R   S W +  D+  +A+VYSG+
Sbjct:   203 FILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRD-VSAWKVGMDSGTLAAVYSGV 261

Query:   192 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXL 251
             +CSG+ YYIQ IV+++RGPVF  +FSP+CM+I A +  ++LAE+++L            L
Sbjct:   262 VCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGSIIGAIFIVFGL 321

Query:   252 YLVVWGKSKD 261
             Y VVWGK+KD
Sbjct:   322 YSVVWGKAKD 331

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 133/269 (49%), Positives = 178/269 (66%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EPV+DQNLY++GM YT+ATFA+A  N+LPAITF++A I RLE+VN K +RS+AKV+GT+ 
Sbjct:    84 EPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNFKKVRSIAKVVGTVI 143

Query:    76 TVAGAMVMTLIKGPILELFWTKGAENHG-------HGSSGTTTHNS--IKGALMITAGCF 126
             TV+GA++MTL KGPI++     G    G       HG +G    +   I G LM+    F
Sbjct:   144 TVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDKHWIPGTLMLLGRTF 203

Query:   127 SWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVAS 186
              W+ F ILQ+ TLK YPAELSLT  IC  GT+EGT  +L+  R   S W I +D+ L A+
Sbjct:   204 GWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRD-LSAWKIGFDSNLFAA 262

Query:   187 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXX 246
              YSG+ICSG+ YY+QG+VM++RGPVFVA F+PLC+VI A +  ++L+E ++L        
Sbjct:   263 AYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVVLSESIHLGSVIGTLF 322

Query:   247 XXXXLYLVVWGKSKDHKSPSPSTD-EHLP 274
                 LY VVWGK KD +      D + LP
Sbjct:   323 IIVGLYTVVWGKGKDKRMTDDDEDCKGLP 351

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 120/250 (48%), Positives = 178/250 (71%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EPV+DQ   ++GM  T+AT+ +A+ NILP++TF++AWI+R+E VN+  +RS AK+IGTL 
Sbjct:    86 EPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAEVRSKAKIIGTLV 145

Query:    76 TVAGAMVMTLIKGPILELFWTKGA--ENHGHGSSGTTTHNSIKGALMITAGCFSWSFFII 133
              + GA+VMTL KGP++ L W+     + +GH ++    +N + G L+I  GC +WS F +
Sbjct:   146 GLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLGCVAWSGFYV 205

Query:   134 LQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 193
             LQ+IT+K YPA+LSL+A IC  G V+    AL++ER  +  WA+ WD +L A +Y+GI+ 
Sbjct:   206 LQSITIKTYPADLSLSALICLAGAVQSFAVALVVERHPSG-WAVGWDARLFAPLYTGIVS 264

Query:   194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYL 253
             SG+TYY+QG+VMK RGPVFV AF+PLCM++VA++++ IL EQ++             LY+
Sbjct:   265 SGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQIHFGCVIGGAVIAAGLYM 324

Query:   254 VVWGKSKDHK 263
             VVWGK KD++
Sbjct:   325 VVWGKGKDYE 334

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 132/282 (46%), Positives = 182/282 (64%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EP++DQNLY+IG+K T+A++ +A  N LPA+TF++A I RLE VN + + S+AKV+GT+ 
Sbjct:    84 EPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETVNFRKVHSVAKVVGTVI 143

Query:    76 TVAGAMVMTLIKGPILELFWTKGAENHGHG-SSGTTT-HNSIKGALMITAGCFSWSFFII 133
             TV GAM+MTL KGP +E+   K A N  HG SS T T  + + G + I     +W+ F I
Sbjct:   144 TVGGAMIMTLYKGPAIEI--VKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSISTWAAFFI 201

Query:   134 LQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 193
             LQ+ TLK YPAELSL   IC  GT+   +A+LIM R   S W I  D+  +A+VYSG++C
Sbjct:   202 LQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDP-SAWKIGMDSGTLAAVYSGVVC 260

Query:   194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYL 253
             SG+ YYIQ IV+K RGPVF  +FSP+CM+I A +  ++LAE+++L            LY 
Sbjct:   261 SGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLAEKIHLGSIIGAVFIVLGLYS 320

Query:   254 VVWGKSKDHKSPSPSTDEHLPPAEQTNNTGSNGKENFGHEVT 295
             VVWGKSKD  +P    DE +    Q     +  K+  GH+V+
Sbjct:   321 VVWGKSKDEVNP---LDEKIVAKSQELPITNVVKQTNGHDVS 359

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 120/249 (48%), Positives = 167/249 (67%)

Query:    16 EPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75
             EPV++QNLY+ GMK TTATF +A+ N LPA+TF+MA + +LE V ++   S AK++GT+ 
Sbjct:    81 EPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEKVTIERRHSQAKLVGTMV 140

Query:    76 TVAGAMVMTLIKGPILELFWT---KGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFI 132
              + GAM+MT +KG ++EL WT   +G   H H        +  +G++M+ A CFSWS +I
Sbjct:   141 AIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIARGSIMLVASCFSWSCYI 200

Query:   133 ILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 192
             ILQA  L  Y AELSLTA +C  G +E T+  LI ER   S+W I+ D  L+AS+Y G++
Sbjct:   201 ILQAKILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSVWKINPDVTLLASIYGGLV 260

Query:   193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLY 252
              SGL YY+ G   K+RGPVFV+AF+PL MV+VAI+ST +  E++Y+            +Y
Sbjct:   261 -SGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFLEKVYVGRVIGSVVIVIGIY 319

Query:   253 LVVWGKSKD 261
             LV+WGKSKD
Sbjct:   320 LVLWGKSKD 328

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 117/255 (45%), Positives = 172/255 (67%)

Query:    17 PVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLAT 76
             PVIDQN Y++G+KYT+ TF+ AM N+LPA+TF++A + R+E ++LK +   AK+ GT+ T
Sbjct:    92 PVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTVVT 151

Query:    77 VAGAMVMTLIKGPILELFWTK--GAENHGHGSSGTTTHNS-----IKGALMITAGCFSWS 129
             VAGAM+MT+ KGPI+ELFWTK    ++  H ++ ++ ++S     +KG++++     +W+
Sbjct:   152 VAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWA 211

Query:   130 FFIILQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVY 188
                +LQA  LK Y   +LSLT  ICF GT++      +ME    S W I WD  L+A+ Y
Sbjct:   212 SLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNP-SAWRIGWDMNLLAAAY 270

Query:   189 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXX 248
             SGI+ S ++YY+QGIVMK RGPVF  AFSPL MVIVA+M + +LAE+++L          
Sbjct:   271 SGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKIFLGGVIGAVLIV 330

Query:   249 XXLYLVVWGKSKDHK 263
               LY V+WGK K+++
Sbjct:   331 IGLYAVLWGKQKENQ 345

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 106/270 (39%), Positives = 167/270 (61%)

Query:    17 PVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLAT 76
             PVIDQNLY+IG+K T+ TF++A+ NI+PAIT ++A + R+E V ++ +R L KV+GTL T
Sbjct:    85 PVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVEMRKVRCLVKVMGTLVT 144

Query:    77 VAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQA 136
             V G+++M   KGP +  F      +H   +S   T + +K A+ +     SW+ F +LQA
Sbjct:   145 VVGSILMIFYKGPFINFF-----RSHLTAASSPPTADYLKAAVFLLLASLSWASFFVLQA 199

Query:   137 ITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196
              TLK Y A LS++  +CF GT++    A +ME   +++  I +D  L+AS Y+GI+ S +
Sbjct:   200 ATLKKYSAHLSMSTMVCFMGTLQSLALAFVMEHNPSAL-NIGFDMNLLASAYAGIMSSSI 258

Query:   197 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLXXXXXXXXXXXXLYLVVW 256
              YY+QG++M+ +GPVFV AF+PL +VIV+IMS  +L + +YL            +Y V+W
Sbjct:   259 AYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQGIYLGGVIGVVVLMVGVYAVLW 318

Query:   257 GKSKDHKSPSPSTDEHLPPAEQTNNTGSNG 286
             GK  D        ++++   +  +  G+NG
Sbjct:   319 GKHVDDDGEETRHEDNVVAVKCCS--GNNG 346

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUS1	WTR13_ARATH	No assigned EC number	0.6433	0.9799	0.7710	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023132001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (394 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	8e-43
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	9e-08
pfam00892	126	pfam00892, EamA, EamA-like transporter family	2e-07
pfam00892	126	pfam00892, EamA, EamA-like transporter family	1e-04
PRK11453	299	PRK11453, PRK11453, O-acetylserine/cysteine export	2e-04
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	3e-04
TIGR03340	281	TIGR03340, phn_DUF6, phosphonate utilization assoc	4e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  150 bits (379), Expect = 8e-43
 Identities = 95/267 (35%), Positives = 156/267 (58%), Gaps = 8/267 (2%)

Query: 1   MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVN 60
           ++++IL+K+ LLG L  +     Y IG++Y+  T A+A+ NI PA+TF++A I R+E V+
Sbjct: 73  LSVSILSKIGLLGFLGSMYVITGY-IGIEYSNPTLASAISNITPALTFILAIIFRMEKVS 131

Query: 61  LKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNS---IKG 117
            K   S+AKV+GT+ ++ GA+V+    GP + +  +    N    S   ++ NS   I G
Sbjct: 132 FKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGG 191

Query: 118 ALMITAGCF-SWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA 176
           AL+   G F S SF  ILQA  +  YPA  +++       ++  ++  L++E+   S+W 
Sbjct: 192 ALLTIQGIFVSVSF--ILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249

Query: 177 IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQM 236
           IH+D  L+  V   II S + Y I    ++ +GP+++A F PL ++I  +M  I L + +
Sbjct: 250 IHFDITLITIVTMAIITS-VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSL 308

Query: 237 YLGRIIGAIIIIGGLYLVVWGKSKDHK 263
           YLG +IG I+I  G Y V+WGK+ + K
Sbjct: 309 YLGCLIGGILITLGFYAVMWGKANEEK 335

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 32/259 (12%)

Query: 2   TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNL 61
            L     LLLL LL   +   L F+ +KYT+A+ A+ +  +LP  T L+A ++ L     
Sbjct: 65  ALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLL----- 119

Query: 62  KSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMI 121
               SL +++G L  +AG +++ L                      G     S+ G L+ 
Sbjct: 120 GERLSLLQILGILLALAGVLLILL--------------------GGGGGGILSLLGLLLA 159

Query: 122 TAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDT 181
            A    W+ +  L     +  P      A +         L    +    A I +  W  
Sbjct: 160 LAAALLWALYTALVKRLSRLGPV---TLALLLQLLLALLLLLLFFLSGFGAPILSRAW-- 214

Query: 182 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241
             +  +Y G+  +GL Y +    ++  G   VA  S L  V  A++  ++L E +   ++
Sbjct: 215 --LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQL 272

Query: 242 IGAIIIIGGLYLVVWGKSK 260
           +GA +++ G+ L      +
Sbjct: 273 LGAALVVLGVLLASLRARR 291

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 25/131 (19%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 126 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVA 185
            SW+ + +     L+     L+ TA+      +   +  L + R   ++ ++     ++A
Sbjct: 1   LSWALYFVFSKKLLERISP-LTFTAYRFLIAGI-LLILLLFLLRKPFALLSLKA---ILA 55

Query: 186 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAI 245
            +Y G+  + L Y +    +K       +  + L  V   I+S ++L E++ L +++G +
Sbjct: 56  LLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIV 115

Query: 246 IIIGGLYLVVW 256
           +I+ G+ L++ 
Sbjct: 116 LILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 9   LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLA 68
           LL LGL    +   LYF  +KY +A+ A+ + ++ P  T +++ ++  E + LK      
Sbjct: 56  LLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLK------ 109

Query: 69  KVIGTLATVAGAMVMTL 85
           +++G +  + G +++ L
Sbjct: 110 QLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|183142 PRK11453, PRK11453, O-acetylserine/cysteine export protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 38/151 (25%), Positives = 77/151 (50%), Gaps = 6/151 (3%)

Query: 112 HNSIKGALMITAGCFSWSFFIIL--QAITLKAYPAELSLTAWICFFGTVEGTLAALIMER 169
           H ++ G ++  A  FSW+   I   + ++    PA +SL  W      +   +A+LI++ 
Sbjct: 139 HVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILD- 197

Query: 170 GKASIWA--IHWD-TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAI 226
           G A++    +  D T +++ +Y   + + + Y I G ++       VA  S L  V+   
Sbjct: 198 GSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLA 257

Query: 227 MSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257
            + ++L E++   + +GA++I+ GLY+ V+G
Sbjct: 258 SAALLLDERLTGLQFLGAVLIMAGLYINVFG 288

Length = 299

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 34/248 (13%)

Query: 5   ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSI 64
            L +LLLLG L+  +   LYF+ +K      AA +  + P    L++ ++  E       
Sbjct: 45  RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKL-- 102

Query: 65  RSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAG 124
                ++  +  +AGA++  L+    L +                       G L+    
Sbjct: 103 ----VLLAAVLGLAGAVL--LLSDGNLSINP--------------------AGLLLGLGS 136

Query: 125 CFSWSFFIIL-QAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKL 183
             S++   +L + +  K  P  L  T W+   G +     A  +        ++ W    
Sbjct: 137 GISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG-PNPQALSLQW---- 191

Query: 184 VASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIG 243
            A +Y G+I + L Y++    +    P   +  +    ++  ++  +IL E + L ++IG
Sbjct: 192 GALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIG 251

Query: 244 AIIIIGGL 251
             +II  +
Sbjct: 252 GALIIAAV 259

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

>gnl|CDD|234171 TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCM 221
              L ++R   S++         A++  G +  G  Y +    M       V A     +
Sbjct: 191 FLLLYLKRHGRSMFPYARQILPSATL--GGLMIGGAYALVLWAMTRLPVATVVALRNTSI 248

Query: 222 VIVAIMSTIILAEQMYLGRIIGAIIIIGGL 251
           V   ++    L E+ YL R++G  II+ GL
Sbjct: 249 VFAVVLGIWFLNERWYLTRLMGVCIIVAGL 278

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira. Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.96
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.95
PRK11272	292	putative DMT superfamily transporter inner membran	99.95
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.95
PRK11689	295	aromatic amino acid exporter; Provisional	99.94
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.94
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.93
PRK15430	296	putative chloramphenical resistance permease RarD;	99.93
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.92
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.87
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.86
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.85
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.84
KOG2765	416	consensus Predicted membrane protein [Function unk	99.83
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.83
COG2962	293	RarD Predicted permeases [General function predict	99.82
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.77
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.73
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.71
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.65
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.64
COG2510	140	Predicted membrane protein [Function unknown]	99.62
KOG1580	337	consensus UDP-galactose transporter related protei	99.6
KOG2766	336	consensus Predicted membrane protein [Function unk	99.59
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.52
KOG1581	327	consensus UDP-galactose transporter related protei	99.51
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.49
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.35
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.32
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.31
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.29
PRK15430	296	putative chloramphenical resistance permease RarD;	99.25
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.22
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.2
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.2
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.17
KOG1582	367	consensus UDP-galactose transporter related protei	99.13
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.11
PLN00411	358	nodulin MtN21 family protein; Provisional	99.07
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.03
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.02
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.0
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.96
PRK11272	292	putative DMT superfamily transporter inner membran	98.93
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.91
PRK13499	345	rhamnose-proton symporter; Provisional	98.88
COG2510	140	Predicted membrane protein [Function unknown]	98.88
PRK11689	295	aromatic amino acid exporter; Provisional	98.87
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.84
COG2962	293	RarD Predicted permeases [General function predict	98.83
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.83
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.8
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.76
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.67
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.59
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.54
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.44
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.36
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.3
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.29
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.25
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.17
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.14
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.09
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.05
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.94
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.93
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.83
PRK13499	345	rhamnose-proton symporter; Provisional	97.74
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.72
PRK11431	105	multidrug efflux system protein; Provisional	97.66
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.61
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.6
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.58
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.55
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.54
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.5
COG2076	106	EmrE Membrane transporters of cations and cationic	97.49
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.48
COG2076	106	EmrE Membrane transporters of cations and cationic	97.45
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.43
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.42
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.39
PRK11431	105	multidrug efflux system protein; Provisional	97.38
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.84
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.78
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.73
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.6
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.57
KOG2765	416	consensus Predicted membrane protein [Function unk	96.47
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.46
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.44
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.93
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.88
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.53
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.44
KOG1443	349	consensus Predicted integral membrane protein [Fun	95.44
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	93.85
KOG1581	327	consensus UDP-galactose transporter related protei	93.83
KOG1580	337	consensus UDP-galactose transporter related protei	92.05
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	91.85
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	91.2
KOG3912	372	consensus Predicted integral membrane protein [Gen	90.45
PRK02237	109	hypothetical protein; Provisional	89.55
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	88.93
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	88.79
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	88.56
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	85.78
KOG4831	125	consensus Unnamed protein [Function unknown]	84.22
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	83.15
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	82.65
COG1742	109	Uncharacterized conserved protein [Function unknow	82.06
KOG2766	336	consensus Predicted membrane protein [Function unk	81.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	80.58

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=3e-32  Score=242.82  Aligned_cols=260  Identities=32%  Similarity=0.590  Sum_probs=196.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      +++++.++.+.|+++ ..++.+++.|++|++++.++++.++.|+++++++++++.|+++.+++.+++|++|++++++|+.
T Consensus        74 ~~~~~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~  152 (358)
T PLN00411         74 SVSILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGAL  152 (358)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHH
Confidence            367778899999998 7888899999999999999999999999999999999644444444444446999999999999


Q ss_pred             hhhhccCCccchhh-ccCCCcCCCCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 022317           82 VMTLIKGPILELFW-TKGAENHGHGS-SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVE  159 (299)
Q Consensus        82 ~i~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~  159 (299)
                      ++...++......+ +..-+..+... ..........|++++++++++|++|.+++|+..++++++...+.++..++.+.
T Consensus       153 ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~  232 (358)
T PLN00411        153 VVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIV  232 (358)
T ss_pred             HHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHH
Confidence            88754442210000 00000000000 01112234679999999999999999999999999877667777777777776


Q ss_pred             HHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhh
Q 022317          160 GTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG  239 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~  239 (299)
                      ..+.....+..+...|....+...+.+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.
T Consensus       233 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~  311 (358)
T PLN00411        233 TSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG  311 (358)
T ss_pred             HHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence            666666554322333333233345567788876 5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhheeeccccCCC
Q 022317          240 RIIGAIIIIGGLYLVVWGKSKDHK  263 (299)
Q Consensus       240 ~~~G~~lii~G~~l~~~~~~~~~~  263 (299)
                      +++|+++++.|+.+..+.++|+.+
T Consensus       312 ~~iG~~LIl~Gv~l~~~~~~~~~~  335 (358)
T PLN00411        312 CLIGGILITLGFYAVMWGKANEEK  335 (358)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhh
Confidence            999999999999999876655543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.96  E-value=3.8e-27  Score=203.17  Aligned_cols=218  Identities=21%  Similarity=0.292  Sum_probs=187.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      +++++.++...|.++..+++.+++.|++|+++++++++.++.|+++++++++++|||+++++      ++|++++++|++
T Consensus        42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~  115 (260)
T TIGR00950        42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAV  115 (260)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHH
Confidence            56788899999999889999999999999999999999999999999999999999999997      999999999998


Q ss_pred             hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 022317           82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEG  160 (299)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~  160 (299)
                      ++. ..+                     .......|++++++++++|+.+.+..||..++.+ ++.....+++.++.+++
T Consensus       116 li~-~~~---------------------~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l  173 (260)
T TIGR00950       116 LLL-SDG---------------------NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLL  173 (260)
T ss_pred             hhc-cCC---------------------cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHH
Confidence            876 221                     1123467999999999999999999999887764 23455557788888888


Q ss_pred             HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      .+.....+. . ..+   +...|..+++.+++++.+++.+|++++++.++.+++.+.+++|++++++++++++|++++.+
T Consensus       174 ~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~  248 (260)
T TIGR00950       174 LPFAWFLGP-N-PQA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ  248 (260)
T ss_pred             HHHHHhcCC-C-CCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            887765432 1 111   33567778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 022317          241 IIGAIIIIGGLY  252 (299)
Q Consensus       241 ~~G~~lii~G~~  252 (299)
                      ++|+.+++.|+.
T Consensus       249 ~~G~~li~~g~~  260 (260)
T TIGR00950       249 LIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.96  E-value=9.6e-28  Score=211.30  Aligned_cols=230  Identities=13%  Similarity=0.152  Sum_probs=185.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317            1 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA   80 (299)
Q Consensus         1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv   80 (299)
                      ++++++++++..|+++ +.++.+.++|++|++++.++++.++.|+++++++++++|||+++++      +.|++++++|+
T Consensus        60 ~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv  132 (302)
T TIGR00817        60 ISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGV  132 (302)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHH
Confidence            3678999999999997 9999999999999999999999999999999999999999999997      99999999999


Q ss_pred             hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHH
Q 022317           81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK--AYPAELSLTAWICFFGTV  158 (299)
Q Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~v  158 (299)
                      .+..  .+                     .......|++++++++++|++|.++.||..+  +. ++...+.+++..+.+
T Consensus       133 ~l~~--~~---------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~  188 (302)
T TIGR00817       133 ALAS--DT---------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLF  188 (302)
T ss_pred             hhhc--CC---------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHH
Confidence            7653  11                     1122356999999999999999999999887  55 468999999999999


Q ss_pred             HHHHHHHHHhccccc--ceee-----cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH
Q 022317          159 EGTLAALIMERGKAS--IWAI-----HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII  231 (299)
Q Consensus       159 ~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~  231 (299)
                      .+.|.....+..+..  .+..     .....+...++.++.+....+.++++++++.+|+++++...++|++++++++++
T Consensus       189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~  268 (302)
T TIGR00817       189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF  268 (302)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence            999988765531110  0000     000112112233332333334566789999999999999999999999999999


Q ss_pred             hcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317          232 LAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       232 ~~e~~t~~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      +||++++.+++|+++++.|+.++.+.|+++
T Consensus       269 lge~lt~~~~~G~~lil~Gv~l~~~~k~~~  298 (302)
T TIGR00817       269 FGTKISPQQVFGTGIAIAGVFLYSRVKAQK  298 (302)
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999998765443

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.95  E-value=8.3e-27  Score=204.92  Aligned_cols=228  Identities=21%  Similarity=0.287  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            6 LTKLLLLGLLEPVIDQNLYFIGMKY-TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         6 ~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +..+...|++....++.+++.+++| .+++.++++.++.|+++.+++++++|||+++++      +++++++++|+.++.
T Consensus        58 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         58 LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLI  131 (299)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhc
Confidence            3345555666545667788889998 588999999999999999999999999999998      999999999998887


Q ss_pred             hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCch--hHHHHHHHHHHHHHHHH
Q 022317           85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAE--LSLTAWICFFGTVEGTL  162 (299)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~v~~~~  162 (299)
                      ..+.                    ........|++++++++++|+.|.++.||..++.+++  .....+....+.+....
T Consensus       132 ~~~~--------------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (299)
T PRK11453        132 EDSL--------------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFV  191 (299)
T ss_pred             cccC--------------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH
Confidence            2110                    1112235799999999999999999999987665432  23334444444433333


Q ss_pred             HHHHHhcccc--cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          163 AALIMERGKA--SIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       163 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      .....+.+..  ..+...+...|+.+++.++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~  271 (299)
T PRK11453        192 ASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ  271 (299)
T ss_pred             HHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence            3333332110  11222234678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhheeeccc
Q 022317          241 IIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       241 ~~G~~lii~G~~l~~~~~~  259 (299)
                      ++|++++++|+.+..+.++
T Consensus       272 ~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        272 FLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHhcchh
Confidence            9999999999998876554

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.95  E-value=9.2e-27  Score=203.95  Aligned_cols=224  Identities=17%  Similarity=0.178  Sum_probs=187.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGM-KYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA   80 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al-~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv   80 (299)
                      +++++..+...|.++...++.+++.+. ++++++.++++.++.|+++++++++ +|||+++++      ++|++++++|+
T Consensus        64 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv  136 (292)
T PRK11272         64 TLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGI  136 (292)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhH
Confidence            467788888999988778899999999 9999999999999999999999985 699999998      99999999999


Q ss_pred             hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 022317           81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG  160 (299)
Q Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~  160 (299)
                      .++.. ++.                     ......|++++++++++||.|.+..||..++  ++.....+++.++.+.+
T Consensus       137 ~ll~~-~~~---------------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  192 (292)
T PRK11272        137 VLLNS-GGN---------------------LSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVL  192 (292)
T ss_pred             HHHhc-Ccc---------------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHH
Confidence            88752 110                     1123579999999999999999999986543  23556778888888877


Q ss_pred             HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      .+.....+. +..  ...+...|..+++.+++++.+++.+|++++++.++++++.+.+++|+++++++++++||++++.+
T Consensus       193 ~~~~~~~~~-~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~  269 (292)
T PRK11272        193 LIASLLSGE-RLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE  269 (292)
T ss_pred             HHHHHHcCC-ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence            776654332 111  11234678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhheeeccc
Q 022317          241 IIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       241 ~~G~~lii~G~~l~~~~~~  259 (299)
                      ++|+++++.|+++..+.++
T Consensus       270 iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        270 WLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999876544

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.95  E-value=1.9e-25  Score=195.37  Aligned_cols=235  Identities=18%  Similarity=0.254  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +++|+++++++++- +.++.+.+.|++|++.+.++++..+..+++++++++++|+|+++.+      ++|++++++|+.+
T Consensus        76 ~~~~w~y~lla~~D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~l  148 (334)
T PF06027_consen   76 KRPWWKYFLLALLD-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVL  148 (334)
T ss_pred             chhHHHHHHHHHHH-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhh
Confidence            57889999999998 8999999999999999999999999999999999999999999997      9999999999998


Q ss_pred             hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 022317           83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTL  162 (299)
Q Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~  162 (299)
                      +...+...              ++++.+..+..+|++++++++++||+++++.|+..++.+ ..+...+..+++.++..+
T Consensus       149 v~~sD~~~--------------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~i  213 (334)
T PF06027_consen  149 VVVSDVLS--------------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGI  213 (334)
T ss_pred             eeeecccc--------------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHH
Confidence            87544211              111234567789999999999999999999999999875 578888888899998888


Q ss_pred             HHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHH
Q 022317          163 AALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRII  242 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~  242 (299)
                      ...+.|..+....+..  ......+....++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++
T Consensus       214 q~~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~  291 (334)
T PF06027_consen  214 QLAILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYIL  291 (334)
T ss_pred             HHHheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHH
Confidence            8877775333333222  22233333334455677888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhheeeccccC
Q 022317          243 GAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       243 G~~lii~G~~l~~~~~~~~  261 (299)
                      |.++|++|.+++...+.+.
T Consensus       292 af~lIiiG~vvy~~~~~~~  310 (334)
T PF06027_consen  292 AFALIIIGFVVYNLAESPE  310 (334)
T ss_pred             HHHHHHHHhheEEccCCcc
Confidence            9999999999999765443

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.94  E-value=7.6e-26  Score=198.40  Aligned_cols=227  Identities=14%  Similarity=0.144  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc----cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            6 LTKLLLLGLLEPVIDQNLYFIGMKY----TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         6 ~~~~~~~g~~~~~~~~~~~~~al~~----~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      .++.++.+.+....++.+++.++++    +++..++++.++.|+++.+++++++|||+++++      ++|++++++|+.
T Consensus        60 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~  133 (295)
T PRK11689         60 PKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVA  133 (295)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHh
Confidence            3455566666778888888888764    577888899999999999999999999999997      999999999998


Q ss_pred             hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317           82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT  161 (299)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~  161 (299)
                      ++...+ ...+  .+  +.       ..+......|++++++++++||.|.++.||..++.+ +....   ...+.+.+.
T Consensus       134 li~~~~-~~~~--~~--~~-------~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~  197 (295)
T PRK11689        134 WVLGGD-NGLS--LA--EL-------INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALW  197 (295)
T ss_pred             heecCC-ccch--hh--hh-------hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHH
Confidence            877221 1000  00  00       001112346999999999999999999999876653 45432   223333333


Q ss_pred             HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317          162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI  241 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~  241 (299)
                      +.... +. .. .. ..+...|..+++.++ .++++|.+|++++++.++++++.+.+++|+++++++++++||++++.++
T Consensus       198 ~~~~~-~~-~~-~~-~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~  272 (295)
T PRK11689        198 IKYFL-SP-QP-AM-VFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFW  272 (295)
T ss_pred             HHHHH-hc-Cc-cc-cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence            33322 22 11 11 122345667777774 6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhheeeccc
Q 022317          242 IGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       242 ~G~~lii~G~~l~~~~~~  259 (299)
                      +|+++++.|+.+....++
T Consensus       273 iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        273 QGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHhHHHHhhhHh
Confidence            999999999988876543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.94  E-value=1.1e-24  Score=190.89  Aligned_cols=219  Identities=13%  Similarity=0.102  Sum_probs=173.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      ++++++..+..|++. ...+.+++++++|++++.++++..+.|+++.+++.    ||+++        ..++.++++|+.
T Consensus        67 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--------~~~~~i~~~Gv~  133 (293)
T PRK10532         67 AKEQRLPLLFYGVSL-GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--------FVWVVLAVLGLW  133 (293)
T ss_pred             CHHHHHHHHHHHHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--------HHHHHHHHHHHh
Confidence            467888888889875 88889999999999999999999999999988763    44332        455677899998


Q ss_pred             hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317           82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT  161 (299)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~  161 (299)
                      ++. ..+.                   +.......|++++++++++|+.|.+..||..++.+ +... .+...++++.+.
T Consensus       134 li~-~~~~-------------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~  191 (293)
T PRK10532        134 FLL-PLGQ-------------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFV  191 (293)
T ss_pred             eee-ecCC-------------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHH
Confidence            876 2111                   01112357999999999999999999999877754 4554 455566666666


Q ss_pred             HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317          162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI  241 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~  241 (299)
                      ++....+.    .. ..+...|..+++.|++++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.++
T Consensus       192 ~~~~~~~~----~~-~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~  266 (293)
T PRK10532        192 PIGALQAG----EA-LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQW  266 (293)
T ss_pred             HHHHHccC----cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence            66543221    11 11223455667999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhheeecccc
Q 022317          242 IGAIIIIGGLYLVVWGKSK  260 (299)
Q Consensus       242 ~G~~lii~G~~l~~~~~~~  260 (299)
                      +|+++++.|++...++.++
T Consensus       267 iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        267 LALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            9999999999998766544

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.93  E-value=1.9e-24  Score=188.42  Aligned_cols=218  Identities=16%  Similarity=0.130  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317            4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM   83 (299)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i   83 (299)
                      ++++.+.+.+.++...++.+++.|+++++++.++.+.++.|+++.+++++++|||+++++      ++|+.+++.|+.++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll  133 (281)
T TIGR03340        60 ATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVL  133 (281)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHH
Confidence            445556666666669999999999999999999999999999999999999999999998      99999999999987


Q ss_pred             hhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchh---HHHHHHHHHHHHHH
Q 022317           84 TLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAEL---SLTAWICFFGTVEG  160 (299)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~---~~~~~~~~~~~v~~  160 (299)
                      ...+.                     . .....|+.++++++++|+.|.+..|+..++.++..   ....+.+...++..
T Consensus       134 ~~~~~---------------------~-~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (281)
T TIGR03340       134 GLSRF---------------------A-QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPF  191 (281)
T ss_pred             hcccc---------------------c-ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHH
Confidence            62111                     0 11235788999999999999999887654433211   12222222221111


Q ss_pred             HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      .+.....+.   ..+. ..+..++.+++.+.+++.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+
T Consensus       192 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~  267 (281)
T TIGR03340       192 LLLYLKRHG---RSMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTR  267 (281)
T ss_pred             HHHHHHHhc---cchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHH
Confidence            111111111   1111 122345677788888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 022317          241 IIGAIIIIGGLYL  253 (299)
Q Consensus       241 ~~G~~lii~G~~l  253 (299)
                      ++|+++++.|+.+
T Consensus       268 ~iG~~lil~Gv~l  280 (281)
T TIGR03340       268 LMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhHHh
Confidence            9999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.93  E-value=9.6e-25  Score=191.50  Aligned_cols=209  Identities=12%  Similarity=0.117  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCC
Q 022317           10 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGP   89 (299)
Q Consensus        10 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~   89 (299)
                      ...+.++.+.++.++++|++++++++++++.++.|+++++++++++|||+++++      +.|++++++|+.++....+ 
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~-  148 (296)
T PRK15430         76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG-  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC-
Confidence            446666678999999999999999999999999999999999999999999998      9999999999998762111 


Q ss_pred             ccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHh
Q 022317           90 ILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIME  168 (299)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~  168 (299)
                                          . .     ..++++++++||.|.+..|+..++.. +......+....+.....+.   ..
T Consensus       149 --------------------~-~-----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  199 (296)
T PRK15430        149 --------------------S-L-----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---AD  199 (296)
T ss_pred             --------------------C-c-----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---cc
Confidence                                0 0     14688899999999999888643211 11222333333333322111   11


Q ss_pred             cccccceeecchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 022317          169 RGKASIWAIHWDTKLVASVY-SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII  247 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~li  247 (299)
                      . ....+. .++..++.+++ .|+ .+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|++++
T Consensus       200 ~-~~~~~~-~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI  276 (296)
T PRK15430        200 S-STSHMG-QNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI  276 (296)
T ss_pred             C-Cccccc-CCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            1 111111 11122233343 454 5789999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhheeec
Q 022317          248 IGGLYLVVWG  257 (299)
Q Consensus       248 i~G~~l~~~~  257 (299)
                      +.|+.+....
T Consensus       277 ~~~~~v~~~~  286 (296)
T PRK15430        277 WVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHH
Confidence            9888777643

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.92  E-value=7.4e-24  Score=189.59  Aligned_cols=224  Identities=19%  Similarity=0.215  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +++++.++..|+++... +...+.|+++++++.++++.++.|+++++++++++|||+++++      +.++++++.|+++
T Consensus       111 ~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l  183 (350)
T PTZ00343        111 KLFLKNFLPQGLCHLFV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVAL  183 (350)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHh
Confidence            34778899999998544 5667799999999999999999999999999999999999997      9999999999999


Q ss_pred             hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHH
Q 022317           83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP------AELSLTAWICFFG  156 (299)
Q Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~  156 (299)
                      .+. .+                      ......|++++++++++|++++++.||..++.+      ++.....+....+
T Consensus       184 ~~~-~~----------------------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (350)
T PTZ00343        184 ASV-KE----------------------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIA  240 (350)
T ss_pred             eec-cc----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence            762 11                      112467999999999999999999999887642      2455566667889


Q ss_pred             HHHHHHHHHHHhccc-cccee----ecchhHHHHHHHHHHHHHHHHHHHHH----HHHhccCceEEeecchhHHHHHHHH
Q 022317          157 TVEGTLAALIMERGK-ASIWA----IHWDTKLVASVYSGIICSGLTYYIQG----IVMKDRGPVFVAAFSPLCMVIVAIM  227 (299)
Q Consensus       157 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~~~----~al~~~~~~~~s~~~~l~pv~~~l~  227 (299)
                      .++++|+....|... ...+.    ......+..+++ .++.+++++++++    +++++++|.+.++...++|++++++
T Consensus       241 ~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~  319 (350)
T PTZ00343        241 SLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVS  319 (350)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhh
Confidence            999998887555311 11110    001111223334 3445688888888    4999999999999999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          228 STIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       228 ~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      +++++||++++.+++|+++++.|++++++-
T Consensus       320 s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        320 SIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             hHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999998754

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=164.25  Aligned_cols=218  Identities=24%  Similarity=0.365  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHH-HHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            6 LTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAW-IIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         6 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~-~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +++..+.+.+....++.+++.++++++++.++++.++.|+++.++++ ++++||+++++      +.++++++.|++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~  142 (292)
T COG0697          69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLIL  142 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhee
Confidence            34677777778899999999999999999999999999999999997 66799999997      999999999999988


Q ss_pred             hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHH
Q 022317           85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTA-WICFFGTVEGTLA  163 (299)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~v~~~~~  163 (299)
                      ..+..                   .... ...|+.++++++++|+++.+..|+.. +. ++..... +.+.  .......
T Consensus       143 ~~~~~-------------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~  198 (292)
T COG0697         143 LGGGG-------------------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLL  198 (292)
T ss_pred             cCCCc-------------------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHH
Confidence            32221                   0111 57899999999999999999999877 43 3344444 3333  1111111


Q ss_pred             HHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHH
Q 022317          164 ALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIG  243 (299)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G  243 (299)
                      ......  . . .......+..+.+.|++++++++.++++++++.++...+.+.+++|++++++++++++|+++..+++|
T Consensus       199 ~~~~~~--~-~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G  274 (292)
T COG0697         199 LFFLSG--F-G-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLG  274 (292)
T ss_pred             HHHhcc--c-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            111111  1 1 12233567888899998888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhheeec
Q 022317          244 AIIIIGGLYLVVWG  257 (299)
Q Consensus       244 ~~lii~G~~l~~~~  257 (299)
                      +++++.|+.+...+
T Consensus       275 ~~li~~g~~l~~~~  288 (292)
T COG0697         275 AALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998865

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.86  E-value=5.8e-20  Score=149.86  Aligned_cols=219  Identities=14%  Similarity=0.085  Sum_probs=181.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317            1 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA   80 (299)
Q Consensus         1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv   80 (299)
                      ++++++..+...|... ..-|.+||.+++.+|.+.+..+.++-|+..+++..   |+..   +      .+.+.+++.|+
T Consensus        66 ~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~~---d------~vwvaLAvlGi  132 (292)
T COG5006          66 LSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS---RRLR---D------FVWVALAVLGI  132 (292)
T ss_pred             cChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc---cchh---h------HHHHHHHHHHH
Confidence            4678999999999987 89999999999999999999999999998776553   2222   2      77778889998


Q ss_pred             hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 022317           81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG  160 (299)
Q Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~  160 (299)
                      .++. ..++                   +....+..|..+++.++.||+.|.+..||..+..|. .+-+..-+.++.++.
T Consensus       133 ~lL~-p~~~-------------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv  191 (292)
T COG5006         133 WLLL-PLGQ-------------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIV  191 (292)
T ss_pred             Hhhe-eccC-------------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHH
Confidence            8876 2221                   345667899999999999999999999998876655 667888888999999


Q ss_pred             HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      +|+......     ....++.....-+..+++++.+.|.+-..++++.+..+.+.++.++|.++.+.+++++||.+|+.|
T Consensus       192 ~Pig~~~ag-----~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q  266 (292)
T COG5006         192 LPIGAAQAG-----PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ  266 (292)
T ss_pred             hhhhhhhcc-----hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH
Confidence            999874332     112233444555668889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhheeecc
Q 022317          241 IIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       241 ~~G~~lii~G~~l~~~~~  258 (299)
                      |+|+.+++.+..=.....
T Consensus       267 wlaI~~ViaAsaG~~lt~  284 (292)
T COG5006         267 WLAIAAVIAASAGSTLTA  284 (292)
T ss_pred             HHHHHHHHHHHhcccccc
Confidence            999999999877655543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.85  E-value=1.8e-19  Score=158.56  Aligned_cols=238  Identities=16%  Similarity=0.205  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +..+..++..+++. .++..+-+.|++|++.+...++.++.|+++++++.+++|+|.++++      +.++++.++|+++
T Consensus        61 ~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~  133 (303)
T PF08449_consen   61 KIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAI  133 (303)
T ss_pred             cChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHhe
Confidence            45567788888886 8999999999999999999999999999999999999999999998      9999999999999


Q ss_pred             hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 022317           83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGT  161 (299)
Q Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~  161 (299)
                      ..+.+....             +.+.........|+++.+++.++.|+..++++|..++++ ++.+.+++...++.+..+
T Consensus       134 ~~~~~~~~~-------------~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~  200 (303)
T PF08449_consen  134 FTLSDSSSS-------------SSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLL  200 (303)
T ss_pred             eeecccccc-------------cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            885443210             000111122234999999999999999999999998775 578999999999999888


Q ss_pred             HHHHH--Hhc-ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchh
Q 022317          162 LAALI--MER-GKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYL  238 (299)
Q Consensus       162 ~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~  238 (299)
                      +....  .+. .+...+....+..+..++...+ +..++..+.++..++.++.+.+++..++.+++++++++++++++++
T Consensus       201 ~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~  279 (303)
T PF08449_consen  201 ILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSP  279 (303)
T ss_pred             HHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCCh
Confidence            88876  221 0111111222233444444444 4567777788899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhhheeeccccC
Q 022317          239 GRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       239 ~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      .+|+|.++++.|..++.+.++|+
T Consensus       280 ~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  280 LQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHhHHHHHHHHHhhccC
Confidence            99999999999999999877665

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.84  E-value=1.4e-22  Score=166.06  Aligned_cols=231  Identities=15%  Similarity=0.165  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            5 ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +..++++.|+.+ ..+..+.|+|++|.+.++++++..+.|+++.+++|+++|||.++.+      .++..+.+.|+++++
T Consensus        96 ~R~~LiLRg~mG-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv  168 (346)
T KOG4510|consen   96 KRKWLILRGFMG-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV  168 (346)
T ss_pred             cEEEEEeehhhh-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe
Confidence            345567788888 7788888999999999999999999999999999999999999999      999999999999987


Q ss_pred             hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 022317           85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAA  164 (299)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~  164 (299)
                        +.+.+-.+...+++.       +.......|...++.+++.-|...++.|+..|+.|. ...+.+...++.+..++..
T Consensus       169 --RPpFlFG~~t~g~~~-------s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~  238 (346)
T KOG4510|consen  169 --RPPFLFGDTTEGEDS-------SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGC  238 (346)
T ss_pred             --cCCcccCCCcccccc-------ccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHH
Confidence              233322111112211       223445567888888888888888999998898875 4445555556666555554


Q ss_pred             HHHhcccccceeec-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHH
Q 022317          165 LIMERGKASIWAIH-WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIG  243 (299)
Q Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G  243 (299)
                      ...+     .+..+ ...+|+.++.+|+++ .+++.+...++++-.+..+++..+...+++.++.+++|+|.||++.|.|
T Consensus       239 ~~ig-----~~~lP~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~G  312 (346)
T KOG4510|consen  239 ASIG-----AVQLPHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVG  312 (346)
T ss_pred             hhcc-----ceecCccccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhc
Confidence            4222     23332 235677788888875 7889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhheeecc
Q 022317          244 AIIIIGGLYLVVWGK  258 (299)
Q Consensus       244 ~~lii~G~~l~~~~~  258 (299)
                      +++++...++...+|
T Consensus       313 a~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  313 AVMVVSSTVWVALKK  327 (346)
T ss_pred             eeeeehhHHHHHHHH
Confidence            999999888777554

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.83  E-value=2.1e-19  Score=154.32  Aligned_cols=236  Identities=14%  Similarity=0.180  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            5 ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +..++.+.=.....+.++.++.|+.+++++..+++.++.-+|+..++.++..||+++.      |++++++++.|+++++
T Consensus       157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt  230 (416)
T KOG2765|consen  157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVT  230 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEE
Confidence            4444433333344899999999999999999999999999999999999999999987      6999999999999998


Q ss_pred             hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHH
Q 022317           85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGT  161 (299)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~v~~~  161 (299)
                      .+++..               .++........|.++++++++.||.|.++.||...+.+   |--.+..+..++..++++
T Consensus       231 ~~~s~~---------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllw  295 (416)
T KOG2765|consen  231 MGDSKQ---------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLW  295 (416)
T ss_pred             eccccc---------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHh
Confidence            544321               11234556789999999999999999999998777653   212223344456666777


Q ss_pred             HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317          162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI  241 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~  241 (299)
                      |..++.+.-..+.++.++..+...+++.++++++++-++|.+|.-.++|.++++-+.+..+.+++.+.++-+..+++.++
T Consensus       296 P~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~i  375 (416)
T KOG2765|consen  296 PPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYI  375 (416)
T ss_pred             HHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHH
Confidence            66666554244556666666777788888999999999999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHhhhhheeeccccC
Q 022317          242 IGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       242 ~G~~lii~G~~l~~~~~~~~  261 (299)
                      +|.+.|++|.++.++.....
T Consensus       376 iGsi~Ifv~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  376 IGSIPIFVGFVIVNISSENS  395 (416)
T ss_pred             HHHHHHHHHHhheecccccc
Confidence            99999999999999865443

>TIGR00688 rarD rarD protein

Probab=99.83  E-value=3.9e-19  Score=152.90  Aligned_cols=184  Identities=14%  Similarity=0.122  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317            8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK   87 (299)
Q Consensus         8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~   87 (299)
                      .+...|++ .++++.++++|++++++++++++.++.|+++++++++++|||+++++      +++++++++|++++...+
T Consensus        72 ~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~  144 (256)
T TIGR00688        72 SLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLK  144 (256)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHc
Confidence            35666666 48999999999999999999999999999999999999999999998      999999999998876211


Q ss_pred             CCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 022317           88 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM  167 (299)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  167 (299)
                      +                    +   ..    .++++++++|+.|.+..|+..++ +. ...... .....+...+.....
T Consensus       145 ~--------------------~---~~----~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~  194 (256)
T TIGR00688       145 G--------------------S---LP----WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLE-TLSLMPVAIYYLLQT  194 (256)
T ss_pred             C--------------------C---ch----HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHH-HHHHHHHHHHHHHHh
Confidence            1                    0   01    35788999999999999886443 22 222221 112222222221111


Q ss_pred             hcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH
Q 022317          168 ERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII  231 (299)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~  231 (299)
                      +.  .......+...|..+++.|++ +.++|.++++++++.++++++.+.+++|+++++++.+.
T Consensus       195 ~~--~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       195 DF--ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             cc--CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            11  111111122367777788876 78999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=144.89  Aligned_cols=219  Identities=15%  Similarity=0.153  Sum_probs=173.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      ++|.+..+.+.+++. ..++..|.+|..+...-++++=++.+|++.++++.+++|||+++.|      ++++.++.+||.
T Consensus        68 ~p~~~~~~~l~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~  140 (293)
T COG2962          68 QPKTLLMLALTALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVL  140 (293)
T ss_pred             CcHHHHHHHHHHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHH
Confidence            356667777777765 9999999999999999999999999999999999999999999998      999999999999


Q ss_pred             hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317           82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT  161 (299)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~  161 (299)
                      ..++..++.                       +    ..++.=++.|++|...-|+ .+-  ++.+-....+..-.+..+
T Consensus       141 ~~~~~~g~l-----------------------p----wval~la~sf~~Ygl~RK~-~~v--~a~~g~~lE~l~l~p~al  190 (293)
T COG2962         141 IQTWLLGSL-----------------------P----WVALALALSFGLYGLLRKK-LKV--DALTGLTLETLLLLPVAL  190 (293)
T ss_pred             HHHHHcCCC-----------------------c----HHHHHHHHHHHHHHHHHHh-cCC--chHHhHHHHHHHHhHHHH
Confidence            988655432                       1    3455567899999987444 332  235555555555555555


Q ss_pred             HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317          162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI  241 (299)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~  241 (299)
                      ...+..+. ..+.....++..+..++..|.+ ++++..++..+.|+++-++.+.++|.+|....++++++++|+++..++
T Consensus       191 ~yl~~l~~-~~~~~~~~~~~~~~LLv~aG~v-TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~  268 (293)
T COG2962         191 IYLLFLAD-SGQFLQQNANSLWLLLVLAGLV-TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQL  268 (293)
T ss_pred             HHHHHHhc-CchhhhcCCchHHHHHHHhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            44444443 1111122344567777778875 699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhheeeccc
Q 022317          242 IGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       242 ~G~~lii~G~~l~~~~~~  259 (299)
                      +..+++.+|+.++....-
T Consensus       269 ~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         269 VTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999986543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.77  E-value=3.5e-17  Score=142.95  Aligned_cols=207  Identities=15%  Similarity=0.173  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHhhcccchhHHHHHHh-hHHHHHHHHHHHHhhhcccccccccchh----hhHHHHHHhhhhhhhhccCCcc
Q 022317           17 PVIDQNLYFIGMKYTTATFAAAMYN-ILPAITFLMAWIIRLENVNLKSIRSLAK----VIGTLATVAGAMVMTLIKGPIL   91 (299)
Q Consensus        17 ~~~~~~~~~~al~~~~~~~~~~i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~k----~~~~~l~~~Gv~~i~~~~~~~~   91 (299)
                      .+.++.+++.++++++.+.+..+.+ +.+++..+.+.+++|||.+++      |    .+|+++.++|++++...+++..
T Consensus        69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~  142 (290)
T TIGR00776        69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA  142 (290)
T ss_pred             HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc
Confidence            5888899999999999999998877 999999999999999999876      5    8889999999888763221100


Q ss_pred             chhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH---HHHHHHHHHHHHHh
Q 022317           92 ELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICF---FGTVEGTLAALIME  168 (299)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~  168 (299)
                                   +  .....+...|++++++++++|+.|.+..|+.  ++ +|....+.+..   .+..+..+...   
T Consensus       143 -------------~--~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~---  201 (290)
T TIGR00776       143 -------------G--IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGHI---  201 (290)
T ss_pred             -------------c--cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHHh---
Confidence                         0  0000233679999999999999999999975  34 45776444443   33332222211   


Q ss_pred             cccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHh-ccCceEEeecchhHHHHHHHHHHHHhcccchhhHH----HH
Q 022317          169 RGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMK-DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI----IG  243 (299)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~-~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~----~G  243 (299)
                      . . ..+   .+..++..+..|++ ..+++.+|..+.+ +.++++++.+...+|+.+.+++++++||+.++.++    +|
T Consensus       202 ~-~-~~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG  275 (290)
T TIGR00776       202 L-A-KPL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVG  275 (290)
T ss_pred             c-c-cch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHH
Confidence            1 1 111   22333444448887 6999999999999 99999999999999999999999999999999999    99


Q ss_pred             HHHHHhhhhheee
Q 022317          244 AIIIIGGLYLVVW  256 (299)
Q Consensus       244 ~~lii~G~~l~~~  256 (299)
                      +++++.|+.+...
T Consensus       276 ~~lIi~~~~l~~~  288 (290)
T TIGR00776       276 IILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.73  E-value=3.7e-16  Score=132.39  Aligned_cols=231  Identities=17%  Similarity=0.206  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      ++|+..++.+.+++. .+++.+.+.++++++++..+++.++..+++++++++++|+|++++|      |.++.+.++|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence            478899999999996 9999999999999999999999999999999999999999999998      999999999999


Q ss_pred             hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchh-HHHHHHHHHHHHHH
Q 022317           82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAEL-SLTAWICFFGTVEG  160 (299)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~v~~  160 (299)
                      ++-.......+  ++..+    ...++........|+++.++++++.++..++.+|..|+.+.++ .........+.++.
T Consensus        86 lv~~~~~~~~~--~~~~~----~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~  159 (244)
T PF04142_consen   86 LVQLSSSQSSD--NSSSS----SVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFN  159 (244)
T ss_pred             eeecCCccccc--ccccc----ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            97633221100  00000    0001123445678999999999999999999999999865333 33344455556655


Q ss_pred             HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      ++.....+.....+.....  .+-...+.-++...++-.+....+|+.+...-+.......+++.++++++|+.+++...
T Consensus       160 ~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f  237 (244)
T PF04142_consen  160 LLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSF  237 (244)
T ss_pred             HHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence            5554433321111111111  11112223333445566667888999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 022317          241 IIGAIII  247 (299)
Q Consensus       241 ~~G~~li  247 (299)
                      .+|..++
T Consensus       238 ~lg~~~V  244 (244)
T PF04142_consen  238 LLGAALV  244 (244)
T ss_pred             hhheecC
Confidence            9998764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.71  E-value=1.2e-17  Score=144.62  Aligned_cols=230  Identities=16%  Similarity=0.195  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +..+..++.+|++. .++..+.+.|+++++++.++++..+.|+++.++++++.+|+.++..      +..++....|+.+
T Consensus        80 ~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~i  152 (316)
T KOG1441|consen   80 KLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAI  152 (316)
T ss_pred             ccchHHHHHHHHHH-HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEE
Confidence            35678888999987 9999999999999999999999999999999999999999999998      9999999999988


Q ss_pred             hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh--hcC-chhHHHHHHHHHHHHH
Q 022317           83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK--AYP-AELSLTAWICFFGTVE  159 (299)
Q Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~-~~~~~~~~~~~~~~v~  159 (299)
                      .+..                       ...-+..|.+.++++.+..++.+++.|+..+  +.+ +++....++..++.+.
T Consensus       153 as~~-----------------------e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~  209 (316)
T KOG1441|consen  153 ASVT-----------------------ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF  209 (316)
T ss_pred             eeec-----------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH
Confidence            7732                       2234678999999999999999999999985  332 5799999999999999


Q ss_pred             HH-HHHHHHhcccccceee-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccch
Q 022317          160 GT-LAALIMERGKASIWAI-HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMY  237 (299)
Q Consensus       160 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t  237 (299)
                      ++ |+....+++....+.. .++.....+++.. ++....+...+..+.+++|.+.++.+...-++.++.++++|+++.|
T Consensus       210 Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt  288 (316)
T KOG1441|consen  210 LLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVT  288 (316)
T ss_pred             HhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCc
Confidence            99 8776655421100011 1111233333333 3345556777899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhhhheeeccccCCC
Q 022317          238 LGRIIGAIIIIGGLYLVVWGKSKDHK  263 (299)
Q Consensus       238 ~~~~~G~~lii~G~~l~~~~~~~~~~  263 (299)
                      +.+.+|+++.++|+.+|.+.|.++++
T Consensus       289 ~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  289 FLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999988766543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4.6e-14  Score=121.72  Aligned_cols=239  Identities=15%  Similarity=0.205  Sum_probs=177.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      .+++..++.+.+++. +++|.+.|.++.+.+++..++.+.+..+.|+++..+++++|++++|      |.++++.++|+.
T Consensus        88 ~~~~~lk~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~  160 (345)
T KOG2234|consen   88 APRETLKVSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVA  160 (345)
T ss_pred             ChHHHHHHHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHH
Confidence            356888999999987 8999999999999999999999999999999999999999999998      999999999999


Q ss_pred             hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH-HHHHHHHHH
Q 022317           82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAW-ICFFGTVEG  160 (299)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~v~~  160 (299)
                      ++-+...+.-         +   +.+.....+...|....+.++++.++..++.+|.+|+-..+..+.-. ..+++.++.
T Consensus       161 ~vQ~~~~~~~---------~---a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~  228 (345)
T KOG2234|consen  161 LVQLPSLSPT---------G---AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFN  228 (345)
T ss_pred             HHhccCCCCC---------C---ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            9763222110         0   01123456788999999999999999999999999875533333333 335555555


Q ss_pred             HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317          161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR  240 (299)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~  240 (299)
                      +...+..+..... |.-. -.+|-...+.-++..+++-.+....+|+.+-..-+....+..+++.+.++.+++-++|...
T Consensus       229 ~l~~~~~d~~~i~-~~gf-f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F  306 (345)
T KOG2234|consen  229 LLTILLQDGEAIN-EYGF-FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYF  306 (345)
T ss_pred             HHHHhhccccccc-cCCc-cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence            5555544432221 1110 0111122222333344455556677788887777778888999999999999999999999


Q ss_pred             HHHHHHHHhhhhheeeccccC
Q 022317          241 IIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       241 ~~G~~lii~G~~l~~~~~~~~  261 (299)
                      .+|..+++.++.++...++++
T Consensus       307 ~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  307 LLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHHHHHhhcCCccc
Confidence            999999999999999554443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.64  E-value=4.9e-15  Score=124.35  Aligned_cols=223  Identities=16%  Similarity=0.181  Sum_probs=173.3

Q ss_pred             CHHHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317            2 TLAILTK-LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA   80 (299)
Q Consensus         2 ~~~~~~~-~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv   80 (299)
                      +|++..+ +...|+. .++.-.+-+++++|++.+..++..++.++|+.+++.++.-||+++.-      ..-+.+..+|+
T Consensus        79 sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L------~l~v~lI~~Gl  151 (349)
T KOG1443|consen   79 SWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGL  151 (349)
T ss_pred             cHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhhe
Confidence            4666554 4455555 49999999999999999999999999999999999999999999985      66677777788


Q ss_pred             hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC----chhHHHHHHHHHH
Q 022317           81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP----AELSLTAWICFFG  156 (299)
Q Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~  156 (299)
                      .+++ .++                      .+-...|..+.+++.++-++-..+.++.+++.|    +|...++......
T Consensus       152 flft-~Ks----------------------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M  208 (349)
T KOG1443|consen  152 FLFT-YKS----------------------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWM  208 (349)
T ss_pred             eEEE-ecc----------------------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHH
Confidence            8877 443                      234578999999999999998888888888654    5888888888888


Q ss_pred             HHHHHHHHHHHhccccc----ceeecchh-HHHHHHHHHH--HHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHH
Q 022317          157 TVEGTLAALIMERGKAS----IWAIHWDT-KLVASVYSGI--ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST  229 (299)
Q Consensus       157 ~v~~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~gi--~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~  229 (299)
                      .+.++|..+.+|++...    .|...++. .++.+...+.  ....+--...+.-+.+++..+.++.+...-+-+.+++.
T Consensus       209 ~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~  288 (349)
T KOG1443|consen  209 SIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAI  288 (349)
T ss_pred             HHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHH
Confidence            88888998888863222    22222221 2333222222  12222333455668889999999999999999999999


Q ss_pred             HHhcccchhhHHHHHHHHHhhhhhe
Q 022317          230 IILAEQMYLGRIIGAIIIIGGLYLV  254 (299)
Q Consensus       230 ~~~~e~~t~~~~~G~~lii~G~~l~  254 (299)
                      ++.+|.++...|.|..+...|+.+.
T Consensus       289 ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  289 IILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHhhcchhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.62  E-value=2.4e-14  Score=105.10  Aligned_cols=136  Identities=16%  Similarity=0.152  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317          117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  196 (299)
Q Consensus       117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  196 (299)
                      ..++++++++.+++..++.|--.++. ||..-+..+.....+++..+.+...  +++.....++..|..+...|+ ++++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g--~~~~~~~~~~k~~lflilSGl-a~gl   79 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG--NWQAGGEIGPKSWLFLILSGL-AGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC--ceecccccCcceehhhhHHHH-HHHH
Confidence            56899999999999999999888876 4688888888888877777776444  333222235567888888885 6799


Q ss_pred             HHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          197 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       197 ~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +..+|++|++..+++++..+.-+.|++++++++++++|+++..+++|+.++++|.++...
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999999988764

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.60  E-value=3.8e-14  Score=114.77  Aligned_cols=228  Identities=10%  Similarity=0.070  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317            8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK   87 (299)
Q Consensus         8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~   87 (299)
                      .+..+++- +.+.+..-+.|+||+|=....+-.+..|+-+++++.++.+++.+|+.      ..++++..+|+++.. ++
T Consensus        87 ~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~k------Y~cVL~IV~GValFm-YK  158 (337)
T KOG1580|consen   87 MYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRK------YCCVLMIVVGVALFM-YK  158 (337)
T ss_pred             HHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHH------HHHHHHHHHHHHHhh-cc
Confidence            34444444 47778888889999999999999999999999999999999999885      999999999999987 44


Q ss_pred             CCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 022317           88 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALI  166 (299)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~  166 (299)
                      ....               ....+.....|.++.+++-..-++....+.+.-..+. ..-+++.+..+.+.+.+....++
T Consensus       159 ~~Kv---------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf  223 (337)
T KOG1580|consen  159 ENKV---------------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF  223 (337)
T ss_pred             cccc---------------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee
Confidence            3221               1233455678999999999999998888888766553 34677888888888877776665


Q ss_pred             Hhc-ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHH
Q 022317          167 MER-GKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAI  245 (299)
Q Consensus       167 ~~~-~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~  245 (299)
                      .+. .+...+..-.+..|+.+..+++ ++++++.+.+.-+.+.+|.+-+++.....+++++.++++++.+++.+||+|..
T Consensus       224 TGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtv  302 (337)
T KOG1580|consen  224 TGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTV  302 (337)
T ss_pred             hhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHH
Confidence            432 1112223334566788887887 56899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhheeeccc
Q 022317          246 IIIGGLYLVVWGKS  259 (299)
Q Consensus       246 lii~G~~l~~~~~~  259 (299)
                      +++.|...-....+
T Consensus       303 lVF~aL~~D~~~GK  316 (337)
T KOG1580|consen  303 LVFSALTADVVDGK  316 (337)
T ss_pred             HHHHHhhhHhhcCC
Confidence            99999888775443

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.59  E-value=1.3e-15  Score=124.67  Aligned_cols=224  Identities=15%  Similarity=0.257  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            5 ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      .|..+++.+++- +-+|++...|.||++.....++-.-..+.+.+++|+++|.|.++.+      ..|++++++|+.+++
T Consensus        77 ~~~hYilla~~D-VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV  149 (336)
T KOG2766|consen   77 KWRHYILLAFVD-VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVV  149 (336)
T ss_pred             HHHHhhheeEEe-ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEE
Confidence            455677777776 6777788889999999999999999999999999999999999986      999999999999987


Q ss_pred             hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 022317           85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAA  164 (299)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~  164 (299)
                      ..+-               +.-++.++.++.+|+++.++++-+||..++..+...++.+ ..+++....++|+++..+-.
T Consensus       150 ~sDV---------------~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~  213 (336)
T KOG2766|consen  150 FSDV---------------HAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQF  213 (336)
T ss_pred             Eeee---------------ccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence            3321               1112355677889999999999999999999999888875 48888888889998888773


Q ss_pred             HHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHH
Q 022317          165 LIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGA  244 (299)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~  244 (299)
                       +.+..+..  ..++...... .+...++.++-|.+.-..+|..+++..++-......+++++  ..||=.++|...++.
T Consensus       214 -i~~~~~~~--tl~w~~~i~~-yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF  287 (336)
T KOG2766|consen  214 -IFERHHVS--TLHWDSAIFL-YLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAF  287 (336)
T ss_pred             -hhhcccee--eEeehHHHHH-HHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHH
Confidence             44431222  2222222222 22234455566666777889999999999999999999999  456777999999999


Q ss_pred             HHHHhhhhheeec
Q 022317          245 IIIIGGLYLVVWG  257 (299)
Q Consensus       245 ~lii~G~~l~~~~  257 (299)
                      ..+..|.+++..+
T Consensus       288 ~~i~~GliiYs~r  300 (336)
T KOG2766|consen  288 ATIATGLIIYSTR  300 (336)
T ss_pred             HHHHHhhEEeecc
Confidence            9999999999544

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.1e-12  Score=111.63  Aligned_cols=233  Identities=12%  Similarity=0.112  Sum_probs=187.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317            1 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA   80 (299)
Q Consensus         1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv   80 (299)
                      ++++..++.+.+.++. .+....-..+++|.+....+++....|+++++....+++.|+++..      +.++....+|.
T Consensus        72 l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s  144 (314)
T KOG1444|consen   72 LDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGS  144 (314)
T ss_pred             cChHHHHHHccHHHHH-HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHH
Confidence            4688888999999987 8888999999999999999999999999999999999999998887      99999888888


Q ss_pred             hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHH
Q 022317           81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVE  159 (299)
Q Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~  159 (299)
                      .+....+                       ......|+.+++...++-+.+.+..||..+... +.+..+++..+.+.+.
T Consensus       145 ~~~~~~d-----------------------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~  201 (314)
T KOG1444|consen  145 VAAAFTD-----------------------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP  201 (314)
T ss_pred             Hhhcccc-----------------------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH
Confidence            7765222                       112344999999999999999999999877543 4588899999999998


Q ss_pred             HHHHHHHHhccccccee---ecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccc
Q 022317          160 GTLAALIMERGKASIWA---IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQM  236 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~  236 (299)
                      +....++.+..+.-...   ......+..+...++++.++. ++..++.+..++++.++.+..+...+.+...++.+++.
T Consensus       202 l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~is-y~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~  280 (314)
T KOG1444|consen  202 LLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGIS-YTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPF  280 (314)
T ss_pred             HHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCcee
Confidence            88888766531100111   112234566667777665554 45689999999999999998888888888888888899


Q ss_pred             hhhHHHHHHHHHhhhhheeeccccCCCC
Q 022317          237 YLGRIIGAIIIIGGLYLVVWGKSKDHKS  264 (299)
Q Consensus       237 t~~~~~G~~lii~G~~l~~~~~~~~~~~  264 (299)
                      ++...+|..+-+.|-+++++.+.++++.
T Consensus       281 ~~~n~~gll~~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  281 TFLNVIGLLVGFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             chhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence            9999999999999999999887655443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.51  E-value=2.3e-13  Score=114.45  Aligned_cols=235  Identities=14%  Similarity=0.149  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +.-|+++...++.+ .+...|-+.|++|++=....+-.++.-+-+++...++.++|++..+      .....+...|+.+
T Consensus        80 ~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~e------Yl~~~LIs~Gvsi  152 (327)
T KOG1581|consen   80 VAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFE------YLVAFLISLGVSI  152 (327)
T ss_pred             CCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHH------HHHHHHHHhheee
Confidence            34577888888887 8999999999999999999999999999999999999999999997      9999999999988


Q ss_pred             hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 022317           83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGT  161 (299)
Q Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~  161 (299)
                      ..+.+.++              +.+..+..+...|+.++...-+.-++.+..+.++.+++. +++++++...+++++...
T Consensus       153 F~l~~~s~--------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~  218 (327)
T KOG1581|consen  153 FSLFPNSD--------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNG  218 (327)
T ss_pred             EEEecCCC--------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHH
Confidence            77554321              122345567889999999999999999999999998765 578999999988888777


Q ss_pred             HHHHHHhccccc--ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhh
Q 022317          162 LAALIMERGKAS--IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG  239 (299)
Q Consensus       162 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~  239 (299)
                      .-....+. ..+  ++-..++..++-++....+ ..+++.+.++-+++-++.+.+.++.++-+++++++.++++.++++.
T Consensus       219 ~~li~qg~-~~~av~F~~~hp~~~~Di~l~s~~-gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~  296 (327)
T KOG1581|consen  219 TYLILQGH-LLPAVSFIKEHPDVAFDILLYSTC-GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE  296 (327)
T ss_pred             HhhhcCCC-CchHHHHHHcChhHHHHHHHHHHh-hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh
Confidence            66432222 111  1222233455666666654 4788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhheeecccc
Q 022317          240 RIIGAIIIIGGLYLVVWGKSK  260 (299)
Q Consensus       240 ~~~G~~lii~G~~l~~~~~~~  260 (299)
                      ||+|..+++.|+.+-..-+.+
T Consensus       297 q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  297 QWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hccCeeeehHHHHHHHHHHHh
Confidence            999999999999887765544

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.49  E-value=6.9e-14  Score=106.50  Aligned_cols=125  Identities=26%  Similarity=0.411  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022317          126 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM  205 (299)
Q Consensus       126 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al  205 (299)
                      ++||.+.+..|+..++.+ +.....+++..+.+ .++.....+. ..  ....+...+...++.+++++.+++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            478999999999999874 69999999999988 6666665543 11  2233445677788888887899999999999


Q ss_pred             hccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          206 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       206 ~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      ++.+++.++.+..++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.35  E-value=1.8e-11  Score=96.73  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceee-------c-chhH
Q 022317          117 GALMITAGCFSWSFFIILQAITLKA------YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAI-------H-WDTK  182 (299)
Q Consensus       117 G~~~~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~-~~~~  182 (299)
                      |.++++++.++.+++.++.|+..++      ..++.+...+....+.+++++...+.|.........       . .+..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999998887      236899999999999999999998887532111110       0 2234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          183 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       183 ~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +..++..|++. .+.+...+..+++.+|.+.++...++.+.+.++++++++|++|+.++.|+.+.+.|.+++++
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            55555566654 66778889999999999999999999999999999999999999999999999999998864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.32  E-value=3.8e-12  Score=102.46  Aligned_cols=238  Identities=12%  Similarity=0.070  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317            4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM   83 (299)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i   83 (299)
                      ++.+..+..+++. ....+.-..++||.+....+++.++..++++.....+++.|++-.+      +...++.+..-+.-
T Consensus        66 t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va  138 (309)
T COG5070          66 TKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVA  138 (309)
T ss_pred             hhhhhhcCHHHHH-HHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHh
Confidence            3444555666665 6666677789999999999999999999999999999999999888      87777777666655


Q ss_pred             hhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 022317           84 TLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTL  162 (299)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~  162 (299)
                      .+.+.+..                .........|++++..-++.-+.+....||..+-.. .....++|..+++.++++.
T Consensus       139 ~w~D~q~~----------------~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~  202 (309)
T COG5070         139 TWGDQQAS----------------AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLS  202 (309)
T ss_pred             ccchhhHH----------------HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHH
Confidence            53332111                011123456999999999999999999998776322 2388899999999999999


Q ss_pred             HHHHHhcccccceeec-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317          163 AALIMERGKASIWAIH-WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI  241 (299)
Q Consensus       163 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~  241 (299)
                      +.+++|..+....... +.....+++..|+.. +.--++..|.++.++.++.++++.++..-..+-|.++|+|+.+...+
T Consensus       203 ~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si  281 (309)
T COG5070         203 FSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI  281 (309)
T ss_pred             HHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH
Confidence            9998874222211111 112344566666654 44445578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhheeeccccCCCCC
Q 022317          242 IGAIIIIGGLYLVVWGKSKDHKSP  265 (299)
Q Consensus       242 ~G~~lii~G~~l~~~~~~~~~~~~  265 (299)
                      ..+.+-.....++...+.++++++
T Consensus       282 ~sillGflsg~iYavaks~k~q~q  305 (309)
T COG5070         282 FSILLGFLSGAIYAVAKSKKQQNQ  305 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999998888888766654443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.31  E-value=5.5e-11  Score=98.85  Aligned_cols=225  Identities=13%  Similarity=0.093  Sum_probs=155.4

Q ss_pred             HHHHHHHHhhcc-cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhcc
Q 022317           19 IDQNLYFIGMKY-TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTK   97 (299)
Q Consensus        19 ~~~~~~~~al~~-~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~   97 (299)
                      +.+.+-++++++ ++...=.++.+-.++.+++++++++++|.+.+|      ..++++..+|+++.++.++.+...    
T Consensus        76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~----  145 (330)
T KOG1583|consen   76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRS----  145 (330)
T ss_pred             eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhh----
Confidence            344455555555 344444466788899999999999999999998      999999999999998776554322    


Q ss_pred             CCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhc-------
Q 022317           98 GAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMER-------  169 (299)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-------  169 (299)
                      ..+.-++.+..+...+...|+.+..++-+..|.-.++++...+++. ++-+.+++.-+++.+..+...-=..+       
T Consensus       146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~  225 (330)
T KOG1583|consen  146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFK  225 (330)
T ss_pred             hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhc
Confidence            0011112222344567788999999999999999999998888775 56777888777776655433210000       


Q ss_pred             cc---ccceeecchhHHHHHHHHHHHHHHHHHHHHHHH----HhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHH
Q 022317          170 GK---ASIWAIHWDTKLVASVYSGIICSGLTYYIQGIV----MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRII  242 (299)
Q Consensus       170 ~~---~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~a----l~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~  242 (299)
                      .+   .+.....-|..|+.+++.     ++.++....+    -.+.++.++++...++.+++.+++.+.|+.++++..|+
T Consensus       226 se~~~~p~~g~~vP~~~~yLl~n-----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l  300 (330)
T KOG1583|consen  226 SESYLIPLLGFKVPSMWVYLLFN-----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL  300 (330)
T ss_pred             CcceeccccCccccHHHHHHHHH-----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence            00   001111123344444332     3333333333    34567889999999999999999999999999999999


Q ss_pred             HHHHHHhhhhheeecc
Q 022317          243 GAIIIIGGLYLVVWGK  258 (299)
Q Consensus       243 G~~lii~G~~l~~~~~  258 (299)
                      |..+++.|.+++....
T Consensus       301 Ga~lVF~Gt~~fa~~~  316 (330)
T KOG1583|consen  301 GAALVFFGTLLFANVW  316 (330)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.29  E-value=3.3e-11  Score=100.32  Aligned_cols=226  Identities=18%  Similarity=0.198  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCC
Q 022317           10 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGP   89 (299)
Q Consensus        10 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~   89 (299)
                      +...++- ..+..+.|.|+.+++++..+++.....+|+.+++.-+++++++.++      |.|+....+|+.++...+-.
T Consensus        90 l~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~  162 (372)
T KOG3912|consen   90 LPPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVH  162 (372)
T ss_pred             cChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeecc
Confidence            3456666 6777888999999999999999999999999999999999999998      99999999999887632210


Q ss_pred             ccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHh
Q 022317           90 ILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIME  168 (299)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~  168 (299)
                      .        .     ++....-.+...|+.+.+.+-+.-|+..+.-+|..++.. +|.+...|..+++.+++..++..+.
T Consensus       163 ~--------~-----~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~  229 (372)
T KOG3912|consen  163 L--------V-----TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMY  229 (372)
T ss_pred             c--------c-----cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHh
Confidence            0        0     000122245678999999999999999999999999875 6899999999999777666665443


Q ss_pred             ccccc-cee------ecchhH---------HHHHHHHHHHHH-HHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH
Q 022317          169 RGKAS-IWA------IHWDTK---------LVASVYSGIICS-GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII  231 (299)
Q Consensus       169 ~~~~~-~~~------~~~~~~---------~~~l~~~gi~~~-~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~  231 (299)
                      ..+.. .+.      ..+..+         ...+...|...+ ++-++.=.+.-|+.++++-.++-.++..+.-+++...
T Consensus       230 yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m  309 (372)
T KOG3912|consen  230 YIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAM  309 (372)
T ss_pred             heecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHH
Confidence            21111 000      000011         112222332221 1111222244677889999999999999999999999


Q ss_pred             hcccchhhHHHHHHHHHhhhhhee
Q 022317          232 LAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       232 ~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      ..|.+...|+.|..+.+.|+++++
T Consensus       310 ~~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  310 GWEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.25  E-value=9.3e-11  Score=102.99  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=109.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccccccee--ecchhHHHHHHHHH
Q 022317          113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA--IHWDTKLVASVYSG  190 (299)
Q Consensus       113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g  190 (299)
                      +...|++++++++++|+...+..|.. .+. +|.+..++|+.++.+++.+......  +.....  ..+...+ .....+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~   79 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICR--QWSYLKTLIQTPQKI-FMLAVS   79 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHcCHHHH-HHHHHH
Confidence            44679999999999999999999764 555 4799999999999887776654332  111100  0111222 233355


Q ss_pred             HHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          191 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       191 i~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      .+..+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|+++.++|+.+..
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999999999999999999999988765

>TIGR00688 rarD rarD protein

Probab=99.22  E-value=1.5e-10  Score=99.57  Aligned_cols=137  Identities=11%  Similarity=0.173  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccc--ccceeecchhH-HHHHHHHHHH
Q 022317          116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGK--ASIWAIHWDTK-LVASVYSGII  192 (299)
Q Consensus       116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~gi~  192 (299)
                      +|..+.++++++|+...+..|. ..+. +|.+..++|++++.+++.+......+..  ...+...+... +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            4889999999999999999997 4555 5799999999999888776654332100  01111111122 3344555554


Q ss_pred             HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                       .++.+.+++++++++++.+++.+.++.|+++.++++++++|+++.++++|+++.++|+.+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             57889999999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=3.6e-12  Score=105.62  Aligned_cols=211  Identities=12%  Similarity=0.073  Sum_probs=162.3

Q ss_pred             HHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhccCCCcC
Q 022317           23 LYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENH  102 (299)
Q Consensus        23 ~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~~~~~  102 (299)
                      +-+++++|++++...+-.++..+|+.++.++++|+|-+...      ..++.+.+.|..+=+   ++             
T Consensus       118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGv---dq-------------  175 (347)
T KOG1442|consen  118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGV---DQ-------------  175 (347)
T ss_pred             ccceehhhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecc---cc-------------
Confidence            34457999999999999999999999999999999999886      666666666654422   11             


Q ss_pred             CCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhccccccee--ec-
Q 022317          103 GHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWA--IH-  178 (299)
Q Consensus       103 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~-  178 (299)
                          ++..+.-...|.+++..+.++-|+..++.||......+ -+.++++....+.++.+|...+.+. -...+.  .. 
T Consensus       176 ----E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~  250 (347)
T KOG1442|consen  176 ----EGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLP  250 (347)
T ss_pred             ----ccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccch
Confidence                12345567889999999999999999999986665443 4678888889999888888875432 112222  22 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317          179 WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       179 ~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~  258 (299)
                      ....|..+...|+++..++|. -.+=+|.++|.+..+-....-..-.+++..+++|.-+...|-+-++++.|...+.+.|
T Consensus       251 a~~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  251 AIKFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             HHHHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            224455566677766555444 3566899999999999999999999999999999999999999999999999999765


Q ss_pred             ccC
Q 022317          259 SKD  261 (299)
Q Consensus       259 ~~~  261 (299)
                      ..+
T Consensus       330 ~~e  332 (347)
T KOG1442|consen  330 EHE  332 (347)
T ss_pred             HHH
Confidence            443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.20  E-value=2.4e-10  Score=90.57  Aligned_cols=212  Identities=12%  Similarity=0.137  Sum_probs=152.6

Q ss_pred             HHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhcc
Q 022317           18 VIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTK   97 (299)
Q Consensus        18 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~   97 (299)
                      ...++.|..+++..+++.++.+..+...|+.+++++++++|+....      ..+.++++.|++++.+.+.         
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~DN---------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYADN---------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEeccc---------
Confidence            4567899999999999999999999999999999999999999885      9999999999999884332         


Q ss_pred             CCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhcccccce
Q 022317           98 GAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP--AELSLTAWICFFGTVEGTLAALIMERGKASIW  175 (299)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  175 (299)
                                  .....+.|+.+++.+++.-|+|-+.-|+...+.+  +.-.++.-..++...+.....++......++|
T Consensus       129 ------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~  196 (290)
T KOG4314|consen  129 ------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHL  196 (290)
T ss_pred             ------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHH
Confidence                        2234678999999999999999999999887542  32333332222222222211111111133344


Q ss_pred             eecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          176 AIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       176 ~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      +......|..+.-.+.+... -.++.+.++..+.|...++-+..........+.++-+-..+.....|.+++++|.+++.
T Consensus       197 qsFA~~PWG~l~G~A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii  275 (290)
T KOG4314|consen  197 QSFAAAPWGCLCGAAGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII  275 (290)
T ss_pred             HHHhhCCchhhhhHHHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence            32222335555544444333 34556788888889988888888888888888765444678899999999999999888


Q ss_pred             ec
Q 022317          256 WG  257 (299)
Q Consensus       256 ~~  257 (299)
                      ..
T Consensus       276 iP  277 (290)
T KOG4314|consen  276 IP  277 (290)
T ss_pred             cc
Confidence            64

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.17  E-value=5.3e-10  Score=97.48  Aligned_cols=133  Identities=14%  Similarity=0.111  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHH
Q 022317          118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT  197 (299)
Q Consensus       118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  197 (299)
                      ..+.++++++|+...+..|+..++.+ +.  ..+.+..+.+++.++.....  ....|...+ ..++.....+.+.....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL--AQVGWSRLP-ATFWLLLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc--ccCCCCCcc-hhhHHHHHHHHHHHHHH
Confidence            57889999999999999998777643 23  45555566666666655321  112333222 33444444455566788


Q ss_pred             HHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          198 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       198 ~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +.++++++++.+++.++.+.++.|+++.++++++++|++++.+++|+.+++.|+.+...
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999999999988764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.13  E-value=3.9e-10  Score=93.59  Aligned_cols=228  Identities=14%  Similarity=0.160  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317            6 LTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL   85 (299)
Q Consensus         6 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~   85 (299)
                      |+.+..++.+. .....+-.-++.|.+=..-.++..+.-+-+++.+.++-+.|..+.+      .++..+...|.++.++
T Consensus       106 ~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTL  178 (367)
T KOG1582|consen  106 WRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTL  178 (367)
T ss_pred             hhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHHHHhhhh
Confidence            34455555554 6667777778888887777788888888888899999999999998      9999999999999997


Q ss_pred             ccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHH
Q 022317           86 IKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAA  164 (299)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~  164 (299)
                      .+++                   .++..+..|+.+.-.|-++-|.-.-+++|.++..+ +..++.++...++.+.++...
T Consensus       179 ADs~-------------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~m  239 (367)
T KOG1582|consen  179 ADSQ-------------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPM  239 (367)
T ss_pred             cccc-------------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHH
Confidence            6653                   34455678999998899999988888999998776 346778888888988888877


Q ss_pred             HHHhcccccceee---cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317          165 LIMERGKASIWAI---HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI  241 (299)
Q Consensus       165 ~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~  241 (299)
                      .+.+. -.+.|+.   ++.......++... .+.++......-++.-++.+++.+...+..+++++++++|..++|.+..
T Consensus       240 vlTge-~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~  317 (367)
T KOG1582|consen  240 VLTGE-LFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYV  317 (367)
T ss_pred             Hhccc-chhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHh
Confidence            76543 3444432   22223333333333 2344455555667778999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhheeeccccC
Q 022317          242 IGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       242 ~G~~lii~G~~l~~~~~~~~  261 (299)
                      -|..+++.|+++-.+.++.+
T Consensus       318 ~~gllv~lgI~Ln~ysk~nk  337 (367)
T KOG1582|consen  318 WSGLLVVLGIYLNMYSKRNK  337 (367)
T ss_pred             hhhHHHHHHHHhhcccCCCC
Confidence            99999999999988876443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.11  E-value=9.9e-09  Score=87.09  Aligned_cols=218  Identities=16%  Similarity=0.162  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhh---hHHHHHHhh
Q 022317            4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKV---IGTLATVAG   79 (299)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~---~~~~l~~~G   79 (299)
                      +.+...++.|++- .+++...+.|+++.+.+.+..+ ..++-+.+.+.+.++++|.-+..+     +.   .++++.++|
T Consensus        43 ~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~-----~~~G~~Al~liiiG  116 (269)
T PF06800_consen   43 TSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ-----KIIGFLALVLIIIG  116 (269)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch-----HHHHHHHHHHHHHH
Confidence            6677778888886 9999999999999999999966 578888899999999999888776     33   356777888


Q ss_pred             hhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 022317           80 AMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVE  159 (299)
Q Consensus        80 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~  159 (299)
                      +.+....+..+               ++.++..+...|+...+++.+.|..|.+..|.  .+. +++....-+.+--.+.
T Consensus       117 v~lts~~~~~~---------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~  178 (269)
T PF06800_consen  117 VILTSYQDKKS---------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIG  178 (269)
T ss_pred             HHHhccccccc---------------cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHH
Confidence            87766433221               11122455677999999999999999998664  222 4465555544332222


Q ss_pred             HHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhh
Q 022317          160 GTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG  239 (299)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~  239 (299)
                      .+.+..+...  . .+   ....|.. +..|++ ..++.+++..+.++.+.++.=.+.-+.++++.+.+.+++||+=+.+
T Consensus       179 a~i~~~~~~~--~-~~---~k~~~~n-il~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k  250 (269)
T PF06800_consen  179 AFIFNLFSKK--P-FF---EKKSWKN-ILTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK  250 (269)
T ss_pred             HHHHhhcccc--c-cc---ccchHHh-hHHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence            2222221111  1 11   1122333 334443 4678899999999999999999999999999999999999987655


Q ss_pred             ----HHHHHHHHHhhhhh
Q 022317          240 ----RIIGAIIIIGGLYL  253 (299)
Q Consensus       240 ----~~~G~~lii~G~~l  253 (299)
                          .++|+++++.|.++
T Consensus       251 e~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  251 EMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hHHHHHHHHHHHHHhhhc
Confidence                46788888888764

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.07  E-value=2.2e-09  Score=96.27  Aligned_cols=141  Identities=12%  Similarity=0.080  Sum_probs=116.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHH
Q 022317          114 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC  193 (299)
Q Consensus       114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  193 (299)
                      ...-+..+++.-++|+.+.++.|...+..-+|....++|+.+++++++++.+..+. + ..++..+...+..+...|+++
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~-~-~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR-S-RSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHH-h-cccCcchHHHHHHHHHHHHHH
Confidence            45567888899999999999999999876678999999999999999988875542 1 111211234566677777766


Q ss_pred             HHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH------hcccchhhHHHHHHHHHhhhhheeec
Q 022317          194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII------LAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       194 ~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~------~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                       .+.+.++++++++++++.++++.++.|++++++++++      ++|++++.+++|+++.++|+.+....
T Consensus        89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence             5566789999999999999999999999999999998      69999999999999999999887653

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.03  E-value=7.5e-09  Score=90.49  Aligned_cols=234  Identities=14%  Similarity=0.180  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317            8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK   87 (299)
Q Consensus         8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~   87 (299)
                      ..+..|++.+.++..+-+.|+.+.|++..+.+..+.-++.++++..++|||+++++      +.|+.+++.|..++....
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeC
Confidence            45677777788899999999999999999999999999999999999999999999      999999999998876433


Q ss_pred             CCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH---HHH
Q 022317           88 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT---LAA  164 (299)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~---~~~  164 (299)
                      ..+.+      ..+.+ +-...-.......+...... ++..+.....+|..++  +..........++....+   .+.
T Consensus       125 ~~~~~------~~t~~-~l~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~  194 (300)
T PF05653_consen  125 PKEEP------IHTLD-ELIALLSQPGFLVYFILVLV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAIS  194 (300)
T ss_pred             CCCCC------cCCHH-HHHHHhcCcceehhHHHHHH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHH
Confidence            22100      00000 00000000111122222222 2222222222232222  111000000111111000   011


Q ss_pred             HHHhccccc-ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHH-HHHHHHHHHhccc--chh--
Q 022317          165 LIMERGKAS-IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMV-IVAIMSTIILAEQ--MYL--  238 (299)
Q Consensus       165 ~~~~~~~~~-~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv-~~~l~~~~~~~e~--~t~--  238 (299)
                      ..... ... +.....+..| .++..-+.+........+.|+++.+++.+..+.+..=. .+++-+.++++|.  .++  
T Consensus       195 ~~i~~-~~~g~~~f~~~~~y-~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~  272 (300)
T PF05653_consen  195 ILIKL-TFSGDNQFTYPLTY-LLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQ  272 (300)
T ss_pred             HHHHH-HhcCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHH
Confidence            01100 000 1111222233 33333344556677788999999999887777665544 4555566677873  444  


Q ss_pred             --hHHHHHHHHHhhhhheeeccc
Q 022317          239 --GRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       239 --~~~~G~~lii~G~~l~~~~~~  259 (299)
                        ....|+.+++.|+.+....+.
T Consensus       273 ~~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  273 IIGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHHhhheeeccCc
Confidence              446778889999999876543

>TIGR00803 nst UDP-galactose transporter

Probab=99.02  E-value=1.6e-09  Score=91.12  Aligned_cols=213  Identities=13%  Similarity=0.065  Sum_probs=130.8

Q ss_pred             chhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchh---hcc-CCCcCCCCCC
Q 022317           32 TATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELF---WTK-GAENHGHGSS  107 (299)
Q Consensus        32 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~---~~~-~~~~~~~~~~  107 (299)
                      +........+..++++++..+...++|++..+      +++..+...|++...+.+.+.....   .+. ..+.+++.+.
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~   76 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK   76 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc
Confidence            34445677889999999999999999998664      9999999999886554332110000   000 0000000000


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH-HHHHHHHHHHHHHHHHhccccccee--ecchhHHH
Q 022317          108 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAW-ICFFGTVEGTLAALIMERGKASIWA--IHWDTKLV  184 (299)
Q Consensus       108 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~  184 (299)
                      .........|....+.+.++-++..++.++..++.+........ ..+.+.+.........+......+.  ...+...+
T Consensus        77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (222)
T TIGR00803        77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW  156 (222)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence            11223556788888888888888999988876654321111111 1122222211111111110111111  11112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhe
Q 022317          185 ASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV  254 (299)
Q Consensus       185 ~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~  254 (299)
                      .+.    +...++..+..+.+|+.++...+....++++++.++++++++|+++..+++|+.+++.|+.++
T Consensus       157 ~~~----~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       157 IVG----LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHH----HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            222    234566777899999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.00  E-value=1.3e-09  Score=81.54  Aligned_cols=77  Identities=22%  Similarity=0.437  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317            4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM   83 (299)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i   83 (299)
                      +.+.+.+..|+++...++.++++|+++.+ +.++++.++.|+++++++++++|||+++++      +.+++++++|++++
T Consensus        32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~------~~a~~l~~~Gv~li  104 (113)
T PF13536_consen   32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRR------WLAILLILIGVILI  104 (113)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHHHH
Confidence            44566777788886699999999999999 588899999999999999999999999997      99999999999999


Q ss_pred             hhcc
Q 022317           84 TLIK   87 (299)
Q Consensus        84 ~~~~   87 (299)
                      ...+
T Consensus       105 ~~~~  108 (113)
T PF13536_consen  105 AWSD  108 (113)
T ss_pred             hhhh
Confidence            8433

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.00  E-value=9.6e-09  Score=78.21  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317          116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG  195 (299)
Q Consensus       116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  195 (299)
                      .|+++.+++.++-+...++.|+-.++.++ ...... .    . ..... .              ......++.|+++.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~-~--------------~~p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLA-F--------------GLALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHH-H--------------hccHHHHHHHHHHHH
Confidence            37889999999999999999998887653 221111 0    0 00000 0              011235678888899


Q ss_pred             HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHH--HhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI--ILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~--~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      +++.+|.+++++.+.+.+..+..+.+++..+.++.  ++||++|+.+++|++++++|+++..+.++
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999998888888875  79999999999999999999999876433

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.96  E-value=8.1e-09  Score=88.84  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022317          128 WSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKD  207 (299)
Q Consensus       128 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~  207 (299)
                      |+...+..|...++..++....++++..+.+++.+....    .      .+..++...+..+.++..+.+.++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~----~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~   70 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR----R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKR   70 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh----c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556677778777766677888999998888877765542    1      123455666677777778899999999999


Q ss_pred             cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          208 RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       208 ~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      .+++.++++..+.|+++.+++.++++|++++.+++|+.+.++|+.+...
T Consensus        71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            9999999999999999999999999999999999999999999988764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.93  E-value=1.8e-08  Score=88.34  Aligned_cols=131  Identities=9%  Similarity=0.054  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHH
Q 022317          118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT  197 (299)
Q Consensus       118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  197 (299)
                      ....++..+.|+...+..|...++. +|.....+|+.++++++++....... .   .  .+..++......|++.....
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~-~---~--~~~~~~~~~~~~g~~~~~~~   82 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGH-P---L--PTLRQWLNAALIGLLLLAVG   82 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCC-C---C--CcHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999877765 57999999999999988877653221 1   1  12245666667777665667


Q ss_pred             HHHHHHHH-hccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          198 YYIQGIVM-KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       198 ~~~~~~al-~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +.+++++. ++.++..++++.++.|+++.+++.+ ++|+++..+++|+++.++|+.+...
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            78888888 9999999999999999999999985 7999999999999999999988764

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.91  E-value=5.2e-09  Score=78.35  Aligned_cols=107  Identities=18%  Similarity=0.309  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHH
Q 022317          151 WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI  230 (299)
Q Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~  230 (299)
                      +++..+.++.......... ....+.......+......|++....++.++.+++++.++ .++.+..+.|+++.+++.+
T Consensus         3 ~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            4556666666665554221 1111111122334555666666656889999999999995 8889999999999999999


Q ss_pred             HhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          231 ILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       231 ~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      +++|++++.+++|..++++|+.+..+.+.
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999887543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.88  E-value=8.4e-07  Score=78.41  Aligned_cols=242  Identities=15%  Similarity=0.124  Sum_probs=147.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHhhhcc---cccccccchhhhHHHHHH
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIRLENV---NLKSIRSLAKVIGTLATV   77 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~~e~~---~~~~~~~~~k~~~~~l~~   77 (299)
                      +.+.+..-++.|++- .+++..++.++++.+.+.+. +-..++-++..++..++++|-.   +..+  ..--.+|+++.+
T Consensus        69 ~~~~~~~~~l~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~lil  145 (345)
T PRK13499         69 SGSTLLPVFLFGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVAL  145 (345)
T ss_pred             CHHHHHHHHHHHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHH
Confidence            445667777788876 99999999999999999998 4578999999999999988644   2221  111377888899


Q ss_pred             hhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcCchhHHHH
Q 022317           78 AGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFI-------ILQAITLKAYPAELSLTA  150 (299)
Q Consensus        78 ~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~k~~~~~~~~~~~~~~  150 (299)
                      +|+++........          +++++.+...+.+...|++.++++++.++.|.       ...+...+..-++.....
T Consensus       146 iGi~l~s~Ag~~k----------~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~l  215 (345)
T PRK13499        146 IGVAIVGRAGQLK----------ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAAL  215 (345)
T ss_pred             HHHHHHHHhhhhc----------ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHH
Confidence            9998887422111          00000000234567889999999999999999       333321111112232222


Q ss_pred             HHHH---HHHHHHHHHHHHH-h-c-cccc---ceeecc---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEee---
Q 022317          151 WICF---FGTVEGTLAALIM-E-R-GKAS---IWAIHW---DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAA---  215 (299)
Q Consensus       151 ~~~~---~~~v~~~~~~~~~-~-~-~~~~---~~~~~~---~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~---  215 (299)
                      -++.   .+..+.-...... . . .+..   +.....   ..+...-...|+ .-.+++++|..+-++.+......   
T Consensus       216 p~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~  294 (345)
T PRK13499        216 PSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWM  294 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHH
Confidence            2222   3333222221121 1 1 0111   111110   111122223333 34677888888888886654444   


Q ss_pred             c-chhHHHHHHHHHHHHhcccch------hhHHHHHHHHHhhhhheeecc
Q 022317          216 F-SPLCMVIVAIMSTIILAEQMY------LGRIIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       216 ~-~~l~pv~~~l~~~~~~~e~~t------~~~~~G~~lii~G~~l~~~~~  258 (299)
                      + +.+..+++.+.+. ++||.=+      ..-++|++++++|..+....+
T Consensus       295 l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~  343 (345)
T PRK13499        295 LHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN  343 (345)
T ss_pred             HhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence            3 3777788999998 5999655      566999999999998877653

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.88  E-value=8.2e-10  Score=81.41  Aligned_cols=76  Identities=22%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      ++|.|..+.+.|+.+ ++++.+||.|++...++..+.+..+.|++++++++++++||++..+      ++|+.+..+|++
T Consensus        63 ~~k~~lflilSGla~-glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gai  135 (140)
T COG2510          63 GPKSWLFLILSGLAG-GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAI  135 (140)
T ss_pred             CcceehhhhHHHHHH-HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCee
Confidence            567888889999776 9999999999999999999999999999999999999999999998      999999999998


Q ss_pred             hhh
Q 022317           82 VMT   84 (299)
Q Consensus        82 ~i~   84 (299)
                      ++.
T Consensus       136 lvs  138 (140)
T COG2510         136 LVS  138 (140)
T ss_pred             eEe
Confidence            865

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.87  E-value=5.2e-08  Score=85.55  Aligned_cols=131  Identities=13%  Similarity=0.042  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317          116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG  195 (299)
Q Consensus       116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  195 (299)
                      .+++++++++++|+...+..|...+..+ |....++++..+.+++.++..   .   +....   ..+..++ .+.+...
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~---~---~~~~~---~~~~~~~-~~~l~~~   72 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG---F---PRLRQ---FPKRYLL-AGGLLFV   72 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc---c---ccccc---ccHHHHH-HHhHHHH
Confidence            4678899999999999999999888875 799999999999888776431   1   11111   1112222 2333333


Q ss_pred             HHHHHHHHHHh----ccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          196 LTYYIQGIVMK----DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       196 ~~~~~~~~al~----~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      ..+.+++.+++    ..++..++++.++.|+++.++++++++|++++.+++|+++.++|+.+....
T Consensus        73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            44445555554    457778889999999999999999999999999999999999999888753

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.84  E-value=6.5e-09  Score=78.81  Aligned_cols=77  Identities=23%  Similarity=0.504  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      +++++......|.+...+++.+++.++++++++.++++.++.|+++.+++++++||++++++      ++|+++.++|++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~  122 (126)
T PF00892_consen   49 SPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVV  122 (126)
T ss_pred             ChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHH
Confidence            56788888999998779999999999999999999999999999999999999999999997      999999999998


Q ss_pred             hhh
Q 022317           82 VMT   84 (299)
Q Consensus        82 ~i~   84 (299)
                      ++.
T Consensus       123 l~~  125 (126)
T PF00892_consen  123 LIS  125 (126)
T ss_pred             HHH
Confidence            864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.83  E-value=3.3e-08  Score=83.58  Aligned_cols=139  Identities=12%  Similarity=0.208  Sum_probs=113.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccccccee-ecchhHHHHHHHHHHH
Q 022317          114 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA-IHWDTKLVASVYSGII  192 (299)
Q Consensus       114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~  192 (299)
                      ...|+++++.+-+.|+.-..+.|- .+..+ +.++...+.+.+.++.........+ ....+. ..++..+......+.+
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHHHH
Confidence            356999999999999999988775 55554 5899999999998888877766543 222222 2333455666666665


Q ss_pred             HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                       ....+.+|.||.++.....+++-.+++|.+.+++|.++++|+++..|+++.++..+|+....+
T Consensus        82 -i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          82 -IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             -HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence             478899999999999999999999999999999999999999999999999999999888764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.83  E-value=7.2e-08  Score=84.84  Aligned_cols=126  Identities=10%  Similarity=0.095  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHH
Q 022317          118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT  197 (299)
Q Consensus       118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~  197 (299)
                      .++.++++++|+...+..|...++. +|....++|+.++++.+++...   . +..        .+..++..|+......
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~---~-~~~--------~~~~~~~~g~~~~~~~   72 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA---R-PKV--------PLNLLLGYGLTISFGQ   72 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc---C-CCC--------chHHHHHHHHHHHHHH
Confidence            3668899999999999999888776 5799999999887766544331   1 111        1122333344333445


Q ss_pred             HHHHHHHHhc-cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          198 YYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       198 ~~~~~~al~~-~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +.+++.++++ .++..++++..+.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            5566788887 5778999999999999999999999999999999999999999988874

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.80  E-value=1.4e-07  Score=84.78  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHH
Q 022317          119 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY  198 (299)
Q Consensus       119 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~  198 (299)
                      .+.+.--.+...+.+..|+..+..|-|+.+..+++.++.++..+... ....+.+... .....+..++..|++.. ..+
T Consensus        52 ~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~  128 (350)
T PTZ00343         52 LLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVH  128 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHH
Confidence            33333344445677889999988865899999999999876555432 2110111111 01235667777777653 457


Q ss_pred             HHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          199 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       199 ~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      ...+.++++.+++.+.++..++|+++++++.++++|++++.++.+++++++|+.+...
T Consensus       129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            7778999999999999999999999999999999999999999999999999998763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.76  E-value=1e-07  Score=83.97  Aligned_cols=122  Identities=14%  Similarity=0.124  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022317          129 SFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR  208 (299)
Q Consensus       129 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~  208 (299)
                      ..+++++|...++.+.|.....+++.++.+...+... ....+..   ..+..++..++..|++. ++.+.+.+++++++
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~   89 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRL---KISSALLKLLLPVAIVH-TIGHVTSNVSLSKV   89 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCC---CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence            3455778988888778899999999888776655421 1110111   12235677777788874 77788999999999


Q ss_pred             CceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          209 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       209 ~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      +++.++++..+.|+++++++.++++|+++..+++|++++++|+.+..
T Consensus        90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999998754

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.67  E-value=1.3e-07  Score=70.28  Aligned_cols=67  Identities=19%  Similarity=0.295  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          189 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       189 ~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      .++++.++++.++.+++++.+.+.+-.+..+.++++.+++++++||++++.+++|++++++|+++..
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3345667889999999999999999999999999999999999999999999999999999988764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.59  E-value=3.8e-07  Score=67.76  Aligned_cols=68  Identities=16%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317           11 LLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus        11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      ..+++..+..+.++..++++.|.+.+..+.++.++++.++++++++||+++++      ++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            34446678899999999999999999998889999999999999999999997      999999999998876

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.54  E-value=2.1e-06  Score=74.69  Aligned_cols=141  Identities=14%  Similarity=0.240  Sum_probs=104.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHH
Q 022317          114 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC  193 (299)
Q Consensus       114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  193 (299)
                      ...+....+..++.|+......|+..+...........+...+.....+... .+  ........  ..++.....+.+.
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~~~~   79 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LE--PRGLRPAL--RPWLLLLLLALLG   79 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hh--cccccccc--cchHHHHHHHHHH
Confidence            4567888888899999999998887776333355555577666666332222 11  11111111  1134455566666


Q ss_pred             HHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHH-HHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST-IILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       194 ~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~-~~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      ....+.+++.++++.++..++.+.++.|+++.+++. ++++|++++.++.|..+.+.|+++......
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~  146 (292)
T COG0697          80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG  146 (292)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence            788899999999999999999999999999999997 666999999999999999999999887543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.44  E-value=2.9e-06  Score=74.31  Aligned_cols=131  Identities=18%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317          117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  196 (299)
Q Consensus       117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  196 (299)
                      |++++++++++|+...+..|+.. +.+ +.+..  ...++.++.......... +  .+  .....+..-+..|+ .-.+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~--~~--~~~~~~~~g~l~G~-~w~i   71 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-P--EF--WALSIFLVGLLSGA-FWAL   71 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-C--cc--cccHHHHHHHHHHH-HHHh
Confidence            67899999999999999988865 332 23332  345555555444443322 1  11  11122332333333 3578


Q ss_pred             HHHHHHHHHhccCceEEeecch-hHHHHHHHHHHHHhcccchhhH----HHHHHHHHhhhhheeec
Q 022317          197 TYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       197 ~~~~~~~al~~~~~~~~s~~~~-l~pv~~~l~~~~~~~e~~t~~~----~~G~~lii~G~~l~~~~  257 (299)
                      ++.+++.++++.+.+.+-.+.. +.++++.+++.+++||+.+..+    ++|.+++++|+.+....
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            8899999999999999988888 8999999999999999999999    99999999999988654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=1.9e-06  Score=73.90  Aligned_cols=224  Identities=14%  Similarity=0.208  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317            8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK   87 (299)
Q Consensus         8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~   87 (299)
                      +....|++.+.++...-|.|+.+.|++..+.+..+.-++.++++..+++||++...      .+|+.++++|-.+++.-.
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEec
Confidence            45567888889999999999999999999999999999999999999999999998      999999999987777433


Q ss_pred             CCccchhhccCCCcCCCCCCCCCc------cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317           88 GPILELFWTKGAENHGHGSSGTTT------HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT  161 (299)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~  161 (299)
                      ..+         +    +..+...      ....+-+...+...++.=.+  ..|.   ++.. .....+..+++.+-.+
T Consensus       139 P~e---------~----~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~--~~~p---~~g~-tnilvyi~i~s~iGS~  199 (335)
T KOG2922|consen  139 PKE---------Q----EIESVEEVWELATEPGFLVYVIIIILIVLILIF--FYAP---RYGQ-TNILVYIGICSLIGSL  199 (335)
T ss_pred             Ccc---------c----ccccHHHHHHHhcCccHHHHHHHHHHHHHHHhe--eecc---cccc-cceeehhhHhhhhcce
Confidence            211         0    0000000      01111111111111111111  1111   1111 1123333333333111


Q ss_pred             H--------HH--HHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchh-HHHHHHHHHHH
Q 022317          162 L--------AA--LIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI  230 (299)
Q Consensus       162 ~--------~~--~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l-~pv~~~l~~~~  230 (299)
                      -        .+  ..+.+ +.+   ...+..|..++.... +......-.+.|++..+++.++.+.+. -..++++-+.+
T Consensus       200 tV~svKalg~aiklt~~g-~~q---l~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I  274 (335)
T KOG2922|consen  200 TVMSVKALGIAIKLTFSG-NNQ---LFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAI  274 (335)
T ss_pred             eeeeHHHHHHHHHHHhcC-Ccc---cccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            0        01  11111 111   112223333333333 335555567899999998877776665 45566666778


Q ss_pred             Hhcccc--h----hhHHHHHHHHHhhhhheeeccccC
Q 022317          231 ILAEQM--Y----LGRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       231 ~~~e~~--t----~~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      +|+|--  +    ...+.|+..++.|+.+....|.++
T Consensus       275 ~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~  311 (335)
T KOG2922|consen  275 LFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDME  311 (335)
T ss_pred             HHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccc
Confidence            888732  2    356788899999999986554433

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.30  E-value=2.8e-05  Score=68.81  Aligned_cols=143  Identities=13%  Similarity=0.031  Sum_probs=97.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317          114 SIKGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  192 (299)
Q Consensus       114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  192 (299)
                      ...+.++.-.-++|-+...+......++ .+.|..-.++.+..-.++..+......  ....+.......||.-+.++++
T Consensus        11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~--~~~~~~~~~~~~~w~y~lla~~   88 (334)
T PF06027_consen   11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR--GFKKWLKVLKRPWWKYFLLALL   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc--ccccchhhcchhHHHHHHHHHH
Confidence            3445555555555555555555544443 233555555555554444444333222  1112222222455666666765


Q ss_pred             HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      - ..+.++...|.++++.+.+.++.....++++++++++++++.++.+++|+++.++|+.+......
T Consensus        89 D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen   89 D-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             H-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            5 67899999999999999999999999999999999999999999999999999999999887643

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.29  E-value=6.7e-07  Score=74.53  Aligned_cols=137  Identities=12%  Similarity=0.109  Sum_probs=97.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317          113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  192 (299)
Q Consensus       113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  192 (299)
                      ...+|..+..++ ..+-...+..++..+..  |......+++.-.+...|..+.... .  .+.....+.|  ++.=|+.
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~-~--v~gp~g~R~~--LiLRg~m  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQ-P--VIGPEGKRKW--LILRGFM  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEee-e--eecCCCcEEE--EEeehhh
Confidence            556788888888 77777788888877664  4555555554444444444332221 0  1111111222  2333443


Q ss_pred             HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~  258 (299)
                      + ..+.++.+|++++.+-+.+.++....|+++.++++++++|+.|+...+|..+.+.|+++..+..
T Consensus       107 G-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  107 G-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             h-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            3 4567888999999999999999999999999999999999999999999999999999999753

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.25  E-value=5.2e-06  Score=72.83  Aligned_cols=78  Identities=21%  Similarity=0.217  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +..+..++..|++...+.+.++++++++.+++.++++.++.|++..++++++++|+++..+      ++|..+.++|++.
T Consensus       205 ~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~  278 (293)
T PRK10532        205 WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMG  278 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHH
Confidence            3445556788898889999999999999999999999999999999999999999999998      9999999999998


Q ss_pred             hhhc
Q 022317           83 MTLI   86 (299)
Q Consensus        83 i~~~   86 (299)
                      ....
T Consensus       279 ~~~~  282 (293)
T PRK10532        279 STLT  282 (293)
T ss_pred             HHhc
Confidence            8743

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.17  E-value=2.4e-05  Score=58.55  Aligned_cols=68  Identities=18%  Similarity=0.385  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317          191 IICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       191 i~~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~  258 (299)
                      +++.+++++++..++++.+.+.+=.+ ..+.-+.+.+.++++++|++++.+++|+.++++|++......
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            33457789999999999998766555 468889999999999999999999999999999999886543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.14  E-value=5.5e-05  Score=66.71  Aligned_cols=129  Identities=14%  Similarity=0.075  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHhhcC-c--hhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHH
Q 022317          127 SWSFFIILQAITLKAYP-A--ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGI  203 (299)
Q Consensus       127 ~~a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~  203 (299)
                      ++..+.+.+++..++.. .  +..+++.++....+...+.......   ...   +...+...+..+++ ..++..+.+.
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~~~~~   83 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF---PKS---RKIPLKKYAILSFL-FFLASVLSNA   83 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---cCC---CcChHHHHHHHHHH-HHHHHHHHHH
Confidence            34446677888777543 3  6778888888877766665543321   011   11223333344443 4667788899


Q ss_pred             HHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccCC
Q 022317          204 VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH  262 (299)
Q Consensus       204 al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~~  262 (299)
                      ++++++.....+.-...|+.+++++.++++++.+..++++.+++.+|+.+....+.++.
T Consensus        84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            99999999999999999999999999999999999999999999999999998755443

; GO: 0055085 transmembrane transport

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.09  E-value=1.8e-05  Score=60.27  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHH--HhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            9 LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWI--IRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         9 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~--~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      ++..|+...++.+.+|..++++.+++.+..+.+..+.++.+.++.  +++|++++.+      ++|+.+.++|++++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            577888888999999999999999999999999999888888885  7999999997      999999999999976

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.05  E-value=9.3e-05  Score=57.16  Aligned_cols=132  Identities=15%  Similarity=0.103  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317          117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  196 (299)
Q Consensus       117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  196 (299)
                      ..+++++++++-+.....+.+..++..+|+...+..+..+.+.+.....+.+.+   ++....+..||..+ .|++ ..+
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~---~~~~~~~~p~w~~l-GG~l-G~~   76 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP---SLASLSSVPWWAYL-GGLL-GVF   76 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc---ccchhccCChHHhc-cHHH-HHH
Confidence            467889999999999999999999887789999999999999988888776642   22222222333333 4454 466


Q ss_pred             HHHHHHHHHhccCceEEeecchh-HHHHHHHHHHH----HhcccchhhHHHHHHHHHhhhhh
Q 022317          197 TYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI----ILAEQMYLGRIIGAIIIIGGLYL  253 (299)
Q Consensus       197 ~~~~~~~al~~~~~~~~s~~~~l-~pv~~~l~~~~----~~~e~~t~~~~~G~~lii~G~~l  253 (299)
                      ...+..+.+++++++....+... +-+.+++++.+    .-++++++.+++|.+++++|+.+
T Consensus        77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            67778889999998766655544 55556666664    23468999999999999999864

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.94  E-value=2.1e-05  Score=68.87  Aligned_cols=120  Identities=19%  Similarity=0.169  Sum_probs=88.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317          113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  192 (299)
Q Consensus       113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  192 (299)
                      +...|..+++.++++.+....++||...+.+. ....                  .  .....+....+.||    .|++
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~------------------~--~~~~~~~l~~~~W~----~G~~   58 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLR------------------A--GSGGRSYLRRPLWW----IGLL   58 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc------------------c--cchhhHHHhhHHHH----HHHH
Confidence            45789999999999999999999997776532 0000                  0  00000000112222    2333


Q ss_pred             HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      ..+++..+.+.|+...+++.++.+..+.-++..+++..+++|+++..++.|+++++.|..+....
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            34556677788999999999999999999999999999999999999999999999998887754

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.93  E-value=1.3e-06  Score=71.93  Aligned_cols=224  Identities=17%  Similarity=0.176  Sum_probs=148.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhh---hHHHHHH
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKV---IGTLATV   77 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~---~~~~l~~   77 (299)
                      +++.+..-++.|++- ..++..-+.|+++.+++.+..+ ..++-+-+.+++.+.++|-.+..+     +.   +++++.+
T Consensus        55 T~~~~iv~~isG~~W-s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliv  128 (288)
T COG4975          55 TLTIFIVGFISGAFW-SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIV  128 (288)
T ss_pred             chhhHHHHHHhhhHh-hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHH
Confidence            455566666677765 8899999999999999999965 668888889999999999888665     23   3345555


Q ss_pred             hhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 022317           78 AGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGT  157 (299)
Q Consensus        78 ~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~  157 (299)
                      +|+.+-...+..               +.+.++..+...|+...+.+.+.|..|.++.+...-+  . +....-+ .++.
T Consensus       129 iG~~lTs~~~~~---------------nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~--g-~saiLPq-AiGM  189 (288)
T COG4975         129 IGIYLTSKQDRN---------------NKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVD--G-LSAILPQ-AIGM  189 (288)
T ss_pred             HhheEeeeeccc---------------cccccChHhhhhheeeeeeeccceeeeEeeecccccc--c-hhhhhHH-HHHH
Confidence            666554422210               0112334556789999999999999999986654322  1 2222222 2222


Q ss_pred             HHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccch
Q 022317          158 VEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMY  237 (299)
Q Consensus       158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t  237 (299)
                      ++.....-....      +...+...+.-...|++ -++++.++..+-++.+.++.=.+.-+..+++.+-+.++++|+=|
T Consensus       190 v~~ali~~~~~~------~~~~~K~t~~nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt  262 (288)
T COG4975         190 VIGALILGFFKM------EKRFNKYTWLNIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT  262 (288)
T ss_pred             HHHHHHHhhccc------ccchHHHHHHHHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence            222222211110      11111222333334543 36788889999999999988888889999999999999999888


Q ss_pred             hhH----HHHHHHHHhhhhheeec
Q 022317          238 LGR----IIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       238 ~~~----~~G~~lii~G~~l~~~~  257 (299)
                      ..+    ++|++++++|..+....
T Consensus       263 kkEm~~v~iGiilivvgai~lg~~  286 (288)
T COG4975         263 KKEMVYVIIGIILIVVGAILLGIA  286 (288)
T ss_pred             hhhhhhhhhhHHHHHHHhhhhhee
Confidence            765    57888888887776543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.83  E-value=6.8e-05  Score=55.36  Aligned_cols=65  Identities=17%  Similarity=0.318  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      +.++++.++..++++++.+.+=.+ ..+.-+.+.++++++|+|++++.+++|+.++++|++.....
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            446788888999999887655444 55788889999999999999999999999999999998654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.74  E-value=0.00019  Score=63.65  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH--HH--HHHHHhcccccceeecchhHHHHHHH
Q 022317          113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG--TL--AALIMERGKASIWAIHWDTKLVASVY  188 (299)
Q Consensus       113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (299)
                      +...|+++.+++++||+.+.+-.|| .++.+  ++.. |. ..+....  .|  ...+..+.-.+.....+...+..-+.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            3578999999999999999998888 55542  4433 32 1111111  11  11111110112222223344555555


Q ss_pred             HHHHHHHHHHHHHHHHHhccCceEEe-ecchhHHHHHHHHHHHHhcccc-------hhhHHHHHHHHHhhhhheeecccc
Q 022317          189 SGIICSGLTYYIQGIVMKDRGPVFVA-AFSPLCMVIVAIMSTIILAEQM-------YLGRIIGAIIIIGGLYLVVWGKSK  260 (299)
Q Consensus       189 ~gi~~~~~~~~~~~~al~~~~~~~~s-~~~~l~pv~~~l~~~~~~~e~~-------t~~~~~G~~lii~G~~l~~~~~~~  260 (299)
                      .|++ -.+++..+..++++.+.+... +...++-+.+.+++.+++||-.       ...-.+|.+++++|+.+..+..++
T Consensus        79 ~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         79 FGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            6654 478999999999999987654 4556888899999999998744       234688999999999999985444


Q ss_pred             C
Q 022317          261 D  261 (299)
Q Consensus       261 ~  261 (299)
                      +
T Consensus       158 k  158 (345)
T PRK13499        158 K  158 (345)
T ss_pred             c
Confidence            3

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.72  E-value=6.1e-05  Score=63.87  Aligned_cols=132  Identities=9%  Similarity=-0.028  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317          117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  196 (299)
Q Consensus       117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  196 (299)
                      |++.++.|+++|+...+=.||....  |++.+.++++....+..+.+.++.+.   +.+        ..+.++|...-+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~---p~f--------~p~amlgG~lW~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF---PPF--------YPWAMLGGALWAT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC---Ccc--------eeHHHhhhhhhhc
Confidence            6788999999999999988875544  55766666665555555555443332   111        1111122111233


Q ss_pred             HHHHHHHHHhccCceEEeecchh-HHHHHHHHHHH-Hhccc-----chhhHHHHHHHHHhhhhheeeccccC
Q 022317          197 TYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI-ILAEQ-----MYLGRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       197 ~~~~~~~al~~~~~~~~s~~~~l-~pv~~~l~~~~-~~~e~-----~t~~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      +..+-.-+++.++-...-.+-.. +-+.+-..+-+ +||++     -.+..++|++++++|..++..-|.+.
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            44444444555444333333222 33444444433 45442     25788999999999999888765554

The region concerned is approximately 280 residues long.

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.66  E-value=0.00046  Score=50.47  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhccCceE-EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          193 CSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~-~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +.++++++...++|+++... .++-..+.-+.+.+.++++++|++++.+++|+.++++|++..+.
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            44678889999999988754 45566688899999999999999999999999999999998754

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.61  E-value=0.00032  Score=52.56  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317           11 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL   85 (299)
Q Consensus        11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~   85 (299)
                      +..+..++.+++++..++++.|.+.+-.+ ..+.-+.+++++.++++|++++.+      ++|+.+.++|++.+-+
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence            34555568999999999999999998866 579999999999999999999997      9999999999988763

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.60  E-value=0.00077  Score=49.58  Aligned_cols=63  Identities=10%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhccCceE-EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          193 CSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~-~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      +..+++++...++|+++... .++-..+.-+.+.+.++++++|++++.+++|+.+++.|++...
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34678889999999998764 4556668888999999999999999999999999999998764

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.58  E-value=0.0077  Score=52.83  Aligned_cols=241  Identities=14%  Similarity=0.139  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHhhhccc-ccccccchhhhHHHHHHhhh
Q 022317            3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIRLENVN-LKSIRSLAKVIGTLATVAGA   80 (299)
Q Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~~e~~~-~~~~~~~~k~~~~~l~~~Gv   80 (299)
                      ...+....+.|++- .++...|=.+++|++.+... +...+..++..++-.++.++--. ..+.-+..-++|++++++|+
T Consensus        70 ~~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI  148 (344)
T PF06379_consen   70 ASTLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI  148 (344)
T ss_pred             hhHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence            34566777888886 89999999999999998876 66778878887776665332100 00001122389999999999


Q ss_pred             hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH------hhcC-chh----HHH
Q 022317           81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITL------KAYP-AEL----SLT  149 (299)
Q Consensus        81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~------~~~~-~~~----~~~  149 (299)
                      .+........+.        +  . .++..+.+..+|++.++++++..|..++-...-.      .... +|+    ...
T Consensus       149 ai~g~AG~~Ke~--------~--~-~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~  217 (344)
T PF06379_consen  149 AICGKAGSMKEK--------E--L-GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVY  217 (344)
T ss_pred             HHHhHHHHhhhh--------h--h-ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchh
Confidence            998743222111        0  0 0113345677899999999999998887654211      0100 111    122


Q ss_pred             HHHHHHHHHHHHHHHHHHhc--cccc---ceeecch---hHHHHHHHHHHHHHHHHHHHHHHHHhccCce----EEeecc
Q 022317          150 AWICFFGTVEGTLAALIMER--GKAS---IWAIHWD---TKLVASVYSGIICSGLTYYIQGIVMKDRGPV----FVAAFS  217 (299)
Q Consensus       150 ~~~~~~~~v~~~~~~~~~~~--~~~~---~~~~~~~---~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~----~~s~~~  217 (299)
                      ...+.-+.+.-+...+....  .+.+   +.....+   .+....+..|.+ -..++++|..+-.+.++.    .-.+.+
T Consensus       218 vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~m  296 (344)
T PF06379_consen  218 VVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHM  296 (344)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            23333444444444443321  1111   1111111   223333334443 355666777777777643    344566


Q ss_pred             hhHHHHHHHHHHHHhcc------cchhhHHHHHHHHHhhhhheeec
Q 022317          218 PLCMVIVAIMSTIILAE------QMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       218 ~l~pv~~~l~~~~~~~e------~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      .+..+++-+++. +++|      +.-..-+.|+++++.++.+.-+.
T Consensus       297 a~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G  341 (344)
T PF06379_consen  297 ALIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG  341 (344)
T ss_pred             HHHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            677777777775 4677      33345688999888888776543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.55  E-value=0.00056  Score=50.53  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317           12 LGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL   85 (299)
Q Consensus        12 ~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~   85 (299)
                      ..+..+.+.+.++..++++.|.+.+-.+ ..+.-+.++++++++++|++++.+      ++|+.+.++|++.+-+
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            4455668899999999999999998866 668999999999999999999997      9999999999999863

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.0011  Score=51.30  Aligned_cols=139  Identities=13%  Similarity=0.068  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHH
Q 022317          115 IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS  194 (299)
Q Consensus       115 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  194 (299)
                      .+..++.++++++-....-.+.+..+..++|.......+..+.+.+....++.+.  ...+....+..||. ...|+++ 
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~-~~GG~lG-   79 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWA-WIGGLLG-   79 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHH-HHccchh-
Confidence            4678889999999999999999988888788999999999999988888887443  33333222223333 2233332 


Q ss_pred             HHHHHHHHHHHhccCce-EEeecchhHHHHHHHHHHHHhc----ccchhhHHHHHHHHHhhhhheeec
Q 022317          195 GLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILA----EQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       195 ~~~~~~~~~al~~~~~~-~~s~~~~l~pv~~~l~~~~~~~----e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      .+-.+.......+.+++ +......-+-+.+++++-+=+.    .++++.+++|++++++|+++..+.
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            33344455666676665 4555556667777777766443    578999999999999996665543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.50  E-value=0.00041  Score=59.02  Aligned_cols=79  Identities=13%  Similarity=0.254  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317          182 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       182 ~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      +.+....-+++ ..+...+.+.++++.+|++..++..++.++++++++++++.+++..||+++.++++|+.+........
T Consensus        16 ~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   16 DTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            34444444443 56788889999999999999999999999999999999999999999999999999999988765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.49  E-value=0.00026  Score=51.29  Aligned_cols=64  Identities=20%  Similarity=0.416  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHhccCce-EEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          194 SGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       194 ~~~~~~~~~~al~~~~~~-~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      ..++|.+...++|+++.. -.++-..+..+.+.+.++++|+|++++.+++|+.+++.|++.....
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            467888899999998865 3466777888999999999999999999999999999999987654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.48  E-value=0.00069  Score=49.84  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhhcccchhHHHH-HHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317           14 LLEPVIDQNLYFIGMKYTTATFAAA-MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus        14 ~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +..+.+++.+...++++.|.+.+-. -...-.+.+.+.++++++|++++.+      ++|+.+.+.|++.+-
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            4445888999999999999999875 4668889999999999999999997      999999999998753

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00092  Score=48.49  Aligned_cols=68  Identities=18%  Similarity=0.142  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317           11 LLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus        11 ~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +..++++.+++.+...++++.|.+.+- +-...-.+.+++.++++++|+++..+      ++++.+.++|++.+-
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk  102 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhh
Confidence            334455688999999999999999977 55779999999999999999999996      999999999998875

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.43  E-value=0.0007  Score=53.11  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317            4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      +.+..++..|++. ...+.+.+..++++++...+++.....+++.++++++++|+++..+      +.|+.++++|+++
T Consensus        79 ~~~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~  150 (153)
T PF03151_consen   79 NFIFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence            4456666677776 8999999999999999999999999999999999999999999998      9999999999865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.42  E-value=0.00094  Score=47.87  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHhccCceEE-eecchhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 022317          193 CSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII  247 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~-s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~li  247 (299)
                      +.+++++++..++|+.+.+.+ .+...+..+.+.+.+.+++||++++.+++|+.++
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            456788999999999998877 4555689999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.39  E-value=0.0038  Score=53.41  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecc-hhHHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhhee
Q 022317          181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVV  255 (299)
Q Consensus       181 ~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~-~l~pv~~~l~~~~~~~e~~t~~~~----~G~~lii~G~~l~~  255 (299)
                      ..++.-+..|++ -.+++...+.+.++.+.+++..+. .++-+.+.++++++|||.-+..++    .+++++++|+.+..
T Consensus        43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            445555556664 588999999999999999998887 677778999999999998775554    47788899999988


Q ss_pred             eccccCC
Q 022317          256 WGKSKDH  262 (299)
Q Consensus       256 ~~~~~~~  262 (299)
                      +++++++
T Consensus       122 ~~~~~~~  128 (269)
T PF06800_consen  122 YQDKKSD  128 (269)
T ss_pred             ccccccc
Confidence            7655443

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.38  E-value=0.0014  Score=47.91  Aligned_cols=65  Identities=15%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317           14 LLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus        14 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      +.++..++.+...+++..|.+.+-.+ ...-.+.+.+.+.++++|++++.+      ++|+.+.++|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence            45568899999999999999998754 669999999999999999999997      999999999998875

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.84  E-value=0.0056  Score=43.85  Aligned_cols=57  Identities=12%  Similarity=0.008  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHhhcccchhHHHH-HHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHH
Q 022317           13 GLLEPVIDQNLYFIGMKYTTATFAAA-MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA   75 (299)
Q Consensus        13 g~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l   75 (299)
                      .+.....++.++..++++.|.+.+-. ...+..+.+.+.+.++++|+++..+      +.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            34456889999999999999999875 5679999999999999999999997      988865

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.081  Score=46.64  Aligned_cols=141  Identities=13%  Similarity=0.078  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHHHHHHHhcc--cccceee-----cchhHHHH
Q 022317          116 KGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGTLAALIMERG--KASIWAI-----HWDTKLVA  185 (299)
Q Consensus       116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~  185 (299)
                      .-.+..+...+-++......|...++.+   .|.+..+..-++-.+++....+..+..  +......     ..+.+.+.
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4445555556666666666665444331   245555555566666666555543210  0010011     11112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          186 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       186 l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      +..-++ ...+.+.+++.++.+.+|++..+..-+....++++..++++++++.+||...++...|+.+.+..
T Consensus        95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~  165 (345)
T KOG2234|consen   95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP  165 (345)
T ss_pred             HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            222222 34566678999999999999999999999999999999999999999999999999999999843

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.73  E-value=0.0066  Score=50.82  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317            2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      +++-+..-+..|++..++.+.+=+.+++..|...-+++.++.|.+.++.++++++|.++..|      |.++...+.+.+
T Consensus       205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsa  278 (292)
T COG5006         205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASA  278 (292)
T ss_pred             ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHh
Confidence            45556667788899999999999999999999999999999999999999999999999998      999988887776


Q ss_pred             hhh
Q 022317           82 VMT   84 (299)
Q Consensus        82 ~i~   84 (299)
                      -.+
T Consensus       279 G~~  281 (292)
T COG5006         279 GST  281 (292)
T ss_pred             ccc
Confidence            544

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.60  E-value=0.013  Score=43.34  Aligned_cols=109  Identities=9%  Similarity=0.066  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHH
Q 022317          123 AGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQG  202 (299)
Q Consensus       123 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~  202 (299)
                      +-+++|+..+.+.||..+..++.-.- . +..-....     ++..      |     ..+.     .+.....+-..|+
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll~n------~-----~y~i-----pf~lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LLLN------P-----KYII-----PFLLNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HHHh------H-----HHHH-----HHHHHHHHHHHHH
Confidence            45789999999999988765432221 1 21111111     1111      0     1111     1222344566788


Q ss_pred             HHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhe
Q 022317          203 IVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV  254 (299)
Q Consensus       203 ~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~  254 (299)
                      +.+.+.+-+.+..+ ..+.=+++++.++++.+|..++..++|+.+++.|+.+.
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99999999988888 49999999999988777788889999999999998764

Many members are annotated as potential transmembrane proteins.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.57  E-value=0.0014  Score=54.54  Aligned_cols=134  Identities=14%  Similarity=0.089  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317          117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL  196 (299)
Q Consensus       117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~  196 (299)
                      +++.+++=++.|+.......|...   +|.+-+.-..+-+.++.+.+.++ ..      +..+...+..-+..|.+ -.+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~-~~------p~~T~~~~iv~~isG~~-Ws~   71 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLF-VS------PELTLTIFIVGFISGAF-WSF   71 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHhee-ec------CccchhhHHHHHHhhhH-hhh
Confidence            567888899999988877555333   34443333333333333333332 21      11122334444455554 478


Q ss_pred             HHHHHHHHHhccCceEEeecc-hhHHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhheeeccccC
Q 022317          197 TYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       197 ~~~~~~~al~~~~~~~~s~~~-~l~pv~~~l~~~~~~~e~~t~~~~----~G~~lii~G~~l~~~~~~~~  261 (299)
                      ++...+.++++.+.+.+..+. ..+-+-+-+++++.|||..++.++    +++++++.|+.+..+.++.+
T Consensus        72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n  141 (288)
T COG4975          72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN  141 (288)
T ss_pred             hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence            899999999999999888765 467788889999999999887663    46678888999888765433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.47  E-value=0.0066  Score=53.60  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317          195 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       195 ~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      .++.+.++.|+.+.+++..+++....-+++..++.++.+|++|+.+.++..+-+.|+++....+.++
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            6788999999999999999999999999999999999999999999999999999999999876554

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.46  E-value=0.0053  Score=45.30  Aligned_cols=65  Identities=17%  Similarity=0.300  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317           13 GLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM   83 (299)
Q Consensus        13 g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i   83 (299)
                      .++.+-.+...|++.+...+.+.+..+ +++.-++|++.++++.+|..+++.      ++|+.+.++|+.+.
T Consensus        47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence            455568889999999999999999966 689999999999888777778776      99999999998764

Many members are annotated as potential transmembrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.44  E-value=0.0019  Score=56.75  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022317          130 FFIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKD  207 (299)
Q Consensus       130 ~~~v~~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~  207 (299)
                      ..+++.|+..+  +.+-|+.++...+..+.+.....-.+... +  ..+..+...+..++-+|++. .++..+-+.++++
T Consensus        31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~-~--~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~  106 (316)
T KOG1441|consen   31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLV-P--PSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSY  106 (316)
T ss_pred             eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCC-C--CCccccccchHHHHHHHHHH-HHHHHhcchhhhc
Confidence            45577888888  66678888888777777766666554332 1  11222334567777777754 7888999999999


Q ss_pred             cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          208 RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       208 ~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      .+.+..-.+-.++|+++++++.++.+|+.+...+.-+..++.|+.+...
T Consensus       107 v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~  155 (316)
T KOG1441|consen  107 VPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV  155 (316)
T ss_pred             cchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence            9999999999999999999999999999988777766666666666554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.007  Score=52.41  Aligned_cols=125  Identities=18%  Similarity=0.218  Sum_probs=92.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHH
Q 022317          111 THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG  190 (299)
Q Consensus       111 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  190 (299)
                      ......|.++++.+.+..+...++.||..++...    ..              . ...  ...........|    +.|
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~--------------~-ra~--~gg~~yl~~~~W----w~G   70 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SG--------------L-RAG--EGGYGYLKEPLW----WAG   70 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hc--------------c-ccc--CCCcchhhhHHH----HHH
Confidence            3456789999999999999999998887766421    00              0 000  001111111122    245


Q ss_pred             HHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecccc
Q 022317          191 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK  260 (299)
Q Consensus       191 i~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~  260 (299)
                      ++...++-..-+.|....+++.++.+..++.+...+++..+++|++++...+|+.+.++|..+.+....+
T Consensus        71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~  140 (335)
T KOG2922|consen   71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK  140 (335)
T ss_pred             HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence            5566677777777888889999999999999999999999999999999999999999998888765433

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.88  E-value=0.033  Score=48.97  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH-HHhccccc-ceeecchhHHHHHHHHH
Q 022317          113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAAL-IMERGKAS-IWAIHWDTKLVASVYSG  190 (299)
Q Consensus       113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~~g  190 (299)
                      ....|+++..+++++-+.+.+=.|| .|+. + ++.......+-..+..|... ...-++.. .....+...++...+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kk-vk~W-s-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKK-VKGW-S-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhh-cCCc-c-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            4578999999999999999998887 4444 2 44444433333333333332 22221222 11222334555666677


Q ss_pred             HHHHHHHHHHHHHHHhccCce-EEeecchhHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHhhhhheeeccccCC
Q 022317          191 IICSGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILA-------EQMYLGRIIGAIIIIGGLYLVVWGKSKDH  262 (299)
Q Consensus       191 i~~~~~~~~~~~~al~~~~~~-~~s~~~~l~pv~~~l~~~~~~~-------e~~t~~~~~G~~lii~G~~l~~~~~~~~~  262 (299)
                      ++- +++-..|-.++||++.+ -.++...+.-++..++-.++.+       ++-....++|.++.++|+.+..+...+|+
T Consensus        81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke  159 (344)
T PF06379_consen   81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE  159 (344)
T ss_pred             HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence            653 77888899999999865 4455555666666666555433       22345779999999999999998755444


Q ss_pred             C
Q 022317          263 K  263 (299)
Q Consensus       263 ~  263 (299)
                      +
T Consensus       160 ~  160 (344)
T PF06379_consen  160 K  160 (344)
T ss_pred             h
Confidence            3

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.53  E-value=0.21  Score=43.46  Aligned_cols=134  Identities=11%  Similarity=0.057  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH--HHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317          118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTA--WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG  195 (299)
Q Consensus       118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  195 (299)
                      ...++.=+++..+-.+..|.....++-|..+..  +|.+.+.+.....-...-- +...........|..+-.+=    .
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-~~~~l~~~~~kk~~P~~~lf----~   88 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-NFRPLDLRTAKKWFPVSLLF----V   88 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-ecCCcChHHHHHHccHHHHH----H
Confidence            344444455555566777777777765565555  8888877776665543211 22333233333343322111    1


Q ss_pred             HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      ...+.-..++++++.....++-.+.|+++++....+++.+++...+.....+++|......
T Consensus        89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen   89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence            2233346789999999999999999999999999999999999999999999999877664

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.44  E-value=0.01  Score=47.78  Aligned_cols=63  Identities=21%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317          196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~  258 (299)
                      .+.+.|..|+++++|+.++.+..-+..+..++++++++|++...+++..++.+.|++++.+..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            467889999999999999999999999999999999999999999999999999999988753

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=95.44  E-value=0.29  Score=42.39  Aligned_cols=127  Identities=9%  Similarity=0.085  Sum_probs=84.3

Q ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceE
Q 022317          133 ILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVF  212 (299)
Q Consensus       133 v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~  212 (299)
                      .+.++..+.++-|+..+...+.+-.......-.+.+..........++....--+.-..+++++=..+.++++++++.+.
T Consensus        33 f~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSl  112 (349)
T KOG1443|consen   33 FYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSL  112 (349)
T ss_pred             HHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeee
Confidence            34444445555567766666655444333333333321111111112222222222233356777788999999999999


Q ss_pred             EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          213 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       213 ~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      .++.-...+++..+++.++-=|++++.-..-..++.+|+.+..+++.
T Consensus       113 YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT  159 (349)
T KOG1443|consen  113 YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST  159 (349)
T ss_pred             eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence            99999999999999999988899999999999999999999987543

>TIGR00803 nst UDP-galactose transporter

Probab=93.85  E-value=0.058  Score=45.18  Aligned_cols=64  Identities=13%  Similarity=0.085  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317           12 LGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV   82 (299)
Q Consensus        12 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~   82 (299)
                      ..+.. +++..+..+.++|.++..-+....+.++++.+++.++++|+++..+      +.|+.+.+.|+.+
T Consensus       158 ~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l  221 (222)
T TIGR00803       158 VGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL  221 (222)
T ss_pred             HHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence            33443 7778888899999999999999999999999999999999999998      9999999888653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.83  E-value=1.4  Score=38.30  Aligned_cols=139  Identities=12%  Similarity=0.002  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh--------cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHH
Q 022317          116 KGALMITAGCFSWSFFIILQAITLKA--------YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASV  187 (299)
Q Consensus       116 ~G~~~~l~a~~~~a~~~v~~k~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  187 (299)
                      ...++...--..+-.+.++++|+.++        +.++....+.+-+.+.++......  .. ...   ......|+..-
T Consensus        14 ~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~--~~-k~~---~~~~apl~~y~   87 (327)
T KOG1581|consen   14 LLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLK--WW-KKE---LSGVAPLYKYS   87 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHh--cc-ccc---CCCCCchhHHh
Confidence            34444444445555677888876653        233455566666666665532222  11 111   11123344444


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317          188 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD  261 (299)
Q Consensus       188 ~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~  261 (299)
                      +.++ ...++-.+.+.|+|+++=-+..+.=....+-+++++.++.+.+.++.+.+-..+|-.|+.+....+..+
T Consensus        88 ~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   88 LISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             HHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            4444 345666778899999998777788888888899999999999999999999999999999998875444

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.05  E-value=0.19  Score=41.85  Aligned_cols=74  Identities=12%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317            4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM   83 (299)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i   83 (299)
                      ..|+-+.+.++.+ ++++.+.|.-+.+-++-.-+++..+--.|+.+.+.++++.+++.+|      |+|..+.+.+...-
T Consensus       239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhH
Confidence            4567788888887 8999999999999999888899999999999999999999999998      99999999998765


Q ss_pred             h
Q 022317           84 T   84 (299)
Q Consensus        84 ~   84 (299)
                      .
T Consensus       312 ~  312 (337)
T KOG1580|consen  312 V  312 (337)
T ss_pred             h
Confidence            4

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=91.85  E-value=0.12  Score=44.63  Aligned_cols=132  Identities=10%  Similarity=0.019  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH-hccc---cc------ceeecchhHHHHHHHHHH
Q 022317          122 TAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM-ERGK---AS------IWAIHWDTKLVASVYSGI  191 (299)
Q Consensus       122 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~~------~~~~~~~~~~~~l~~~gi  191 (299)
                      +++.+||+.+...+|-.-++... .+..+|-+.++.++...+..+. +...   ..      +....++..+ ...+.|.
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv-~~A~aGG   79 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSV-LFAMAGG   79 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHH-HHHHHhh
Confidence            56789999999888876665432 2346666666555444444332 2111   11      1111111222 2233444


Q ss_pred             HHHHHHHHHHHHHHhccCceEEeecc-hhHHHHHHHHHHHHhcccch--hhHHHHHHHHHhhhhheee
Q 022317          192 ICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMY--LGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       192 ~~~~~~~~~~~~al~~~~~~~~s~~~-~l~pv~~~l~~~~~~~e~~t--~~~~~G~~lii~G~~l~~~  256 (299)
                      +...++..+..+++...+-+.+-.+. .+..++.+.+.++ +..+.+  ..-+.|..++++++++-..
T Consensus        80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~  146 (336)
T PF07168_consen   80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA  146 (336)
T ss_pred             HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence            44577888989998888866555443 2333444555554 344443  2556688888888777553

Transport is dependent on glucose and a proton gradient [].

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=91.20  E-value=0.79  Score=35.32  Aligned_cols=69  Identities=17%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHH----HhhhcccccccccchhhhHHHHHHhhhh
Q 022317            7 TKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWI----IRLENVNLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus         7 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~----~~~e~~~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      +++.+-|+++ +..-.+........+++.+..+ ..-+-+...++.++    .-++++++++      .+|+++.++|+.
T Consensus        65 ~w~~lGG~lG-~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~  137 (138)
T PF04657_consen   65 WWAYLGGLLG-VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVI  137 (138)
T ss_pred             hHHhccHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHh
Confidence            4555688887 8999999999999999998855 45555566666664    2567777775      999999999986


Q ss_pred             h
Q 022317           82 V   82 (299)
Q Consensus        82 ~   82 (299)
                      +
T Consensus       138 L  138 (138)
T PF04657_consen  138 L  138 (138)
T ss_pred             C
Confidence            4

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=90.45  E-value=0.61  Score=39.98  Aligned_cols=63  Identities=13%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          195 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       195 ~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      ..+-.+.+.++..++++...++.....+++.+++.-+++.+++..+|+|+..+.+|++..-..
T Consensus        97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            445566788888889999999999999999999999999999999999999999999887754

>PRK02237 hypothetical protein; Provisional

Probab=89.55  E-value=1.4  Score=32.06  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=38.8

Q ss_pred             EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317          213 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK  258 (299)
Q Consensus       213 ~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~  258 (299)
                      .+.+...-.+.++++.+.+-+.+|+..+++|..++++|+.++.+..
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3455666677888999999999999999999999999998887654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=88.93  E-value=5.3  Score=34.14  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHH-HH-HhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317           10 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMA-WI-IRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK   87 (299)
Q Consensus        10 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla-~~-~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~   87 (299)
                      ++-|.+ .+.++.+-.-.++..+.+.+.++.++.-+++--.. .+ +++++..... ..+..++|+++.++|..+....+
T Consensus        59 mlgG~l-W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   59 MLGGAL-WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             Hhhhhh-hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeec
Confidence            344454 48888888899999999999988777555544332 22 2333322211 11233888888888888777555


Q ss_pred             CCccchhhc------cCCCcC----C---CCCCCC-----CccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022317           88 GPILELFWT------KGAENH----G---HGSSGT-----TTHNSIKGALMITAGCFSWSFFIILQAITLKA  141 (299)
Q Consensus        88 ~~~~~~~~~------~~~~~~----~---~~~~~~-----~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~  141 (299)
                      .+..+....      ..+...    +   +++++.     ...+...|..+++++++.|+...+=.....++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  137 SEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             CCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence            444111100      000000    0   001111     11246789999999999999887766665444

The region concerned is approximately 280 residues long.

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=88.79  E-value=0.13  Score=43.86  Aligned_cols=49  Identities=8%  Similarity=0.068  Sum_probs=0.0

Q ss_pred             hhcccchhHHHHHHhhHHHHHHHHHHHH-hhhcc-cccccccchhhhHHHHHHhhhh
Q 022317           27 GMKYTTATFAAAMYNILPAITFLMAWII-RLENV-NLKSIRSLAKVIGTLATVAGAM   81 (299)
Q Consensus        27 al~~~~~~~~~~i~~~~p~~~~lla~~~-~~e~~-~~~~~~~~~k~~~~~l~~~Gv~   81 (299)
                      -++-.+-+..+++++.+.+.+.++-.++ +|+|+ -+.-      ++|+++.++-..
T Consensus        43 imsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLG------lLCiilimi~lL   93 (381)
T PF05297_consen   43 IMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLG------LLCIILIMIVLL   93 (381)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------HHHHHHHHHHHH
Confidence            3444444445566665555544444333 45544 3332      555555444433

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=88.56  E-value=1.5  Score=31.77  Aligned_cols=46  Identities=17%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             eecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          214 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       214 s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      +.+...-.+.++++++.+-+++|+..+++|..++++|+.++.+..|
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            4455566677889999999999999999999999999999887643

; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.78  E-value=1.7  Score=37.33  Aligned_cols=112  Identities=16%  Similarity=0.129  Sum_probs=78.2

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHHHHHHhcc-c---cccee--ecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEe
Q 022317          141 AYPAELSLTAWICFFGTVEGTLAALIMERG-K---ASIWA--IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVA  214 (299)
Q Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s  214 (299)
                      +.+.|...+.++++....+...+......- .   .++.+  .....+...  +.-+  ...+..+-++++++.+.+..-
T Consensus        57 ~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlp--lsvV--fi~mI~fnnlcL~yVgVaFYy  132 (347)
T KOG1442|consen   57 ILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLP--LSVV--FILMISFNNLCLKYVGVAFYY  132 (347)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcc--hhhe--eeeehhccceehhhcceEEEE
Confidence            345688889999988888777776654321 1   11111  111111111  1111  123345578899999999999


Q ss_pred             ecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317          215 AFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW  256 (299)
Q Consensus       215 ~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~  256 (299)
                      +-..+..++++++++++++++-+..-..++.+|+.|..+-..
T Consensus       133 vgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd  174 (347)
T KOG1442|consen  133 VGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD  174 (347)
T ss_pred             eccchhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence            999999999999999999999999999999999999877654

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=84.22  E-value=1.8  Score=31.20  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHH-HHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317            8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAA-MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT   84 (299)
Q Consensus         8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~   84 (299)
                      .+.+.=+++ --+..+||+-+++.+.+.+.. -.++.-.|+++.+..+..|-..++.      +.|..+.++|+.+.+
T Consensus        54 ~Y~iPFllN-qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   54 EYLIPFLLN-QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHHHH-HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhee
Confidence            334444444 556678899999999999984 4677888898888766444445555      899999999987653

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=83.15  E-value=28  Score=31.56  Aligned_cols=18  Identities=17%  Similarity=-0.101  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 022317          183 LVASVYSGIICSGLTYYI  200 (299)
Q Consensus       183 ~~~l~~~gi~~~~~~~~~  200 (299)
                      ++.+....++...+++.+
T Consensus        62 ~~~~~~~~~~~~~~~~~~   79 (385)
T PF03547_consen   62 LWFIPVFAFIIFILGLLL   79 (385)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            333333333333444433

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=82.65  E-value=1.9  Score=31.13  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=26.4

Q ss_pred             HHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317          225 AIMSTIILAEQMYLGRIIGAIIIIGGLYLVV  255 (299)
Q Consensus       225 ~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~  255 (299)
                      +.++.++++|++++..+.|.++++.++.+..
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF  107 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF  107 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence            4567789999999999999999998877653

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=82.06  E-value=5.6  Score=28.68  Aligned_cols=47  Identities=17%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317          213 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS  259 (299)
Q Consensus       213 ~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~  259 (299)
                      .+.+..+-.+.++++.+++=+.+|+..++.|..+.++|+.++.+..+
T Consensus        61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR  107 (109)
T COG1742          61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR  107 (109)
T ss_pred             HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence            45566677788888899888999999999999999999988887643

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=81.81  E-value=0.35  Score=40.83  Aligned_cols=135  Identities=13%  Similarity=0.056  Sum_probs=85.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317          114 SIKGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII  192 (299)
Q Consensus       114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  192 (299)
                      .+.|..+.-.=.+|-...........++ .+.|..-++..+..-+++-.+...+..+ ...       ..|..-+.++++
T Consensus        16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-~~~-------~~~~hYilla~~   87 (336)
T KOG2766|consen   16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-YIK-------AKWRHYILLAFV   87 (336)
T ss_pred             hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-HHH-------HHHHHhhheeEE
Confidence            3444444333333333333444444444 3345655666665555555555554321 111       112222333332


Q ss_pred             HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                       -+=++++...|.++++-+.+.++-.-..+...+++|++++.+-.++++.|.++.++|+.+....
T Consensus        88 -DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s  151 (336)
T KOG2766|consen   88 -DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS  151 (336)
T ss_pred             -eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence             2445666678888888888888888889999999999999999999999999999999998875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=80.58  E-value=45  Score=31.93  Aligned_cols=16  Identities=6%  Similarity=-0.145  Sum_probs=8.8

Q ss_pred             ecchhHHHHHHHHHHH
Q 022317          215 AFSPLCMVIVAIMSTI  230 (299)
Q Consensus       215 ~~~~l~pv~~~l~~~~  230 (299)
                      ......|+-+.+.|.+
T Consensus       351 ~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFL  366 (524)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444456666666654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.18
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.79
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.54
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.52

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.18  E-value=1.3e-11  Score=93.80  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          189 SGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       189 ~gi~~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      .++++++++++++.+++++.+++.+..+ ..+.|++++++++++++|++++.+++|++++++|+++....
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            5566788999999999999999999998 89999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.79  E-value=4.5e-08  Score=71.65  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317          189 SGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG  257 (299)
Q Consensus       189 ~gi~~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~  257 (299)
                      .++++.++++.++.+++|+.+.+.+..+ ..+.|+++.++++++++|++++.+++|+.+++.|+++....
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4555678899999999999999999888 79999999999999999999999999999999999998754

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.54  E-value=1.8e-07  Score=70.86  Aligned_cols=70  Identities=17%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhc
Q 022317           11 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLI   86 (299)
Q Consensus        11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~   86 (299)
                      +.+++..++++.+++.++++.+++.+..+ .++.|++++++++++++|++++.+      ++|+.+.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence            56677779999999999999999999988 899999999999999999999998      99999999999998743

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.52  E-value=3.9e-07  Score=66.61  Aligned_cols=69  Identities=17%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317           11 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL   85 (299)
Q Consensus        11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~   85 (299)
                      +.+++...+++.++..++++.|.+.+..+ ..+.|++++++++++++|++++.+      ++|+.+.++|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            56666678999999999999999999987 899999999999999999999997      9999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00