Citrus Sinensis ID: 022319

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
ccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccc
ccccccHHHHHHHHHcHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MNDLMTKSFLSYVELKKQAQKDLEADLDiergqlnprdeenLTQFFQEVDAIKGEMEEITNLLLDLqnlnegtksthsgkVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAfkegssvdrtrisvtNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYnatgeepseDVIEKVISGSgkveilegktekdIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANagnfisggtNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
MNDLMTKSFLSYVELKKQAQKDLEADLDIERgqlnprdeenlTQFFQEVDAIKGEMEEITNLLLDLqnlnegtksthsgkvlrglrdRMESDVASILRKAKIVKArlesldksnmINRMLSqafkegssvdrtrisvtnglrvklrdlmndfqslrgkvlsdykedLKRRyynatgeepsedvieKVISgsgkveilegktekdiqrskeRHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANagnfisggTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGliillvclisllTSR
******************************************TQFFQEVDAIKGEMEEITNLLLDLQNL*************************SILRKAKIVKA***************************TRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYN******************************************MDIQRSLTKLHQVFLDMAVLVETQE**MDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLL***
MNDLMTKS************************************FFQEVDAIKGEMEEITNLLLDLQ**************************ASILRKAKIVKARLE***************************SVTNGLRVKLRDLMNDFQ******************************************************SKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY*NQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILEGK*************AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
***LMTKSFLSYVELKKQAQKD****************EENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINR*********SSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
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MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQExxxxxxxxxxxxxxxxxxxxxNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q9ZPV9305 Syntaxin-112 OS=Arabidops yes no 0.986 0.967 0.640 1e-108
Q42374310 Syntaxin-related protein no no 0.913 0.880 0.422 8e-59
O64791303 Syntaxin-124 OS=Arabidops no no 0.959 0.947 0.398 1e-56
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.906 0.888 0.404 3e-52
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.792 0.684 0.433 1e-49
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.869 0.872 0.401 2e-48
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.913 0.800 0.358 8e-44
Q9SRV7306 Putative syntaxin-131 OS= no no 0.956 0.934 0.325 2e-35
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.899 0.884 0.341 1e-31
O16000291 Syntaxin-1A homolog OS=Ca yes no 0.896 0.920 0.268 6e-14
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function desciption
 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/309 (64%), Positives = 250/309 (80%), Gaps = 14/309 (4%)

Query: 1   MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQ-----LNPRDEENLTQFFQEVDAIKGE 55
           MNDLMTKSFLSYVELKKQA+ D+E+D D+E+G+      +P DEENL+ FFQE++ IK  
Sbjct: 1   MNDLMTKSFLSYVELKKQARTDMESDRDLEKGEDFNFDFSPADEENLSGFFQEIETIKTL 60

Query: 56  MEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNM 115
           +EEIT+LLLDLQNLNE TKSTHS K+LRGLRDRMES++ +I RKA  VK  +E+L+K N+
Sbjct: 61  IEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNV 120

Query: 116 INRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNAT 175
            NR    +FKEGS VDRTR S+TNG+R KLRD M++F  LR ++ +DY+EDLKR+Y+ AT
Sbjct: 121 ANR---TSFKEGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLAT 177

Query: 176 GEEPSEDVIEKVISGSGK----VEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLD 231
           GEEPS + +EK+ISGSG     V+  E K E D+ ++KERHEAV DI+RSL +LHQVFLD
Sbjct: 178 GEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-KTKERHEAVNDIKRSLNRLHQVFLD 236

Query: 232 MAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKK-RSWVCWVWAVGLIILLV 290
           MAVLVETQ +++DDIE NVANAG+F+SGGTNSLYYANQ +KK +SWV WV  +G++ILLV
Sbjct: 237 MAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSWVLWVSILGVLILLV 296

Query: 291 CLISLLTSR 299
           C+IS+L SR
Sbjct: 297 CVISMLASR 305
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function description
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|O16000|STX1A_CAEEL Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
356496741 503 PREDICTED: syntaxin-112-like [Glycine ma 0.993 0.590 0.716 1e-118
225430666299 PREDICTED: syntaxin-112 [Vitis vinifera] 0.993 0.993 0.72 1e-118
255561104 493 syntaxin, putative [Ricinus communis] gi 0.996 0.604 0.73 1e-117
359476888 493 PREDICTED: syntaxin-112 [Vitis vinifera] 0.993 0.602 0.71 1e-117
356538204299 PREDICTED: syntaxin-112-like [Glycine ma 0.993 0.993 0.713 1e-117
224133814292 predicted protein [Populus trichocarpa] 0.946 0.969 0.711 1e-109
297832484305 SYP112 [Arabidopsis lyrata subsp. lyrata 0.986 0.967 0.644 1e-108
145360071305 syntaxin-112 [Arabidopsis thaliana] gi|1 0.986 0.967 0.640 1e-106
224097024256 predicted protein [Populus trichocarpa] 0.856 1.0 0.747 1e-106
357483513297 Syntaxin-112 [Medicago truncatula] gi|35 0.926 0.932 0.710 1e-105
>gi|356496741|ref|XP_003517224.1| PREDICTED: syntaxin-112-like [Glycine max] Back     alignment and taxonomy information
 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/300 (71%), Positives = 258/300 (86%), Gaps = 3/300 (1%)

Query: 1   MNDLMTKSFLSYVELKKQAQKDLEADLDIER-GQLNPRDEENLTQFFQEVDAIKGEMEEI 59
           MNDLMTKSFLSYVELKKQA+KDLE D      G+LNP ++ NL+QFFQEV+AIK EMEEI
Sbjct: 205 MNDLMTKSFLSYVELKKQARKDLEDDDLDLEAGKLNPTEDRNLSQFFQEVEAIKVEMEEI 264

Query: 60  TNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRM 119
           +NLL DLQ LNE  K TH  KVLRGLRDRMESD+ ++LRKA+ +KA LE LD+SN+ NR 
Sbjct: 265 SNLLFDLQQLNEEAKCTHGAKVLRGLRDRMESDMVAVLRKARTIKAMLEVLDQSNIANRS 324

Query: 120 LSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEP 179
           LS+++KEGS +DRTR+SVTNGLRVKLRD+MNDF SLR K+LSD+KEDLKRRYY ATGE P
Sbjct: 325 LSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFLSLRDKILSDHKEDLKRRYYTATGEVP 384

Query: 180 SEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQ 239
           +E+V+EK++SGS KVE L GKT+ D+  ++ RHEAVMDIQRSL KLHQVFLDMA+LVETQ
Sbjct: 385 TEEVMEKMVSGSLKVEFLAGKTDADLG-TQVRHEAVMDIQRSLNKLHQVFLDMAILVETQ 443

Query: 240 EEKMDDIEENVANAGNFISGGTNSLYYANQTRKK-RSWVCWVWAVGLIILLVCLISLLTS 298
            EK+D+IE+NV NAGNFI GGTNSLYYA+Q +KK R W+CWV+AVGLIILLVC+I++L+S
Sbjct: 444 GEKLDNIEDNVVNAGNFIHGGTNSLYYADQMKKKNRKWLCWVFAVGLIILLVCIIAMLSS 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430666|ref|XP_002268695.1| PREDICTED: syntaxin-112 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561104|ref|XP_002521564.1| syntaxin, putative [Ricinus communis] gi|223539242|gb|EEF40835.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359476888|ref|XP_002265408.2| PREDICTED: syntaxin-112 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538204|ref|XP_003537594.1| PREDICTED: syntaxin-112-like [Glycine max] Back     alignment and taxonomy information
>gi|224133814|ref|XP_002327687.1| predicted protein [Populus trichocarpa] gi|222836772|gb|EEE75165.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297832484|ref|XP_002884124.1| SYP112 [Arabidopsis lyrata subsp. lyrata] gi|297329964|gb|EFH60383.1| SYP112 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145360071|ref|NP_179418.2| syntaxin-112 [Arabidopsis thaliana] gi|148887439|sp|Q9ZPV9.2|SY112_ARATH RecName: Full=Syntaxin-112; Short=AtSYP112 gi|91806192|gb|ABE65824.1| syntaxin-like protein [Arabidopsis thaliana] gi|330251653|gb|AEC06747.1| syntaxin-112 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224097024|ref|XP_002310814.1| predicted protein [Populus trichocarpa] gi|222853717|gb|EEE91264.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357483513|ref|XP_003612043.1| Syntaxin-112 [Medicago truncatula] gi|355513378|gb|AES95001.1| Syntaxin-112 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.936 0.918 0.639 7e-93
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.913 0.880 0.422 4.6e-57
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.896 0.884 0.425 1.5e-53
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.903 0.885 0.416 4.4e-52
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.923 0.797 0.403 2.8e-50
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.879 0.882 0.408 4.7e-48
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.919 0.806 0.366 5.7e-43
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.903 0.882 0.324 3.9e-37
DICTYBASE|DDB_G0289379333 syn1A "putative syntaxin 1" [D 0.809 0.726 0.273 7.2e-20
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.819 0.733 0.272 1.2e-19
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 188/294 (63%), Positives = 236/294 (80%)

Query:     1 MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQ-----LNPRDEENLTQFFQEVDAIKGE 55
             MNDLMTKSFLSYVELKKQA+ D+E+D D+E+G+      +P DEENL+ FFQE++ IK  
Sbjct:     1 MNDLMTKSFLSYVELKKQARTDMESDRDLEKGEDFNFDFSPADEENLSGFFQEIETIKTL 60

Query:    56 MEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNM 115
             +EEIT+LLLDLQNLNE TKSTHS K+LRGLRDRMES++ +I RKA  VK  +E+L+K N+
Sbjct:    61 IEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNV 120

Query:   116 INRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNAT 175
              NR    +FKEGS VDRTR S+TNG+R KLRD M++F  LR ++ +DY+EDLKR+Y+ AT
Sbjct:   121 ANRT---SFKEGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLAT 177

Query:   176 GEEPSEDVIEKVISGSGK----VEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLD 231
             GEEPS + +EK+ISGSG     V+  E K E D+ ++KERHEAV DI+RSL +LHQVFLD
Sbjct:   178 GEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-KTKERHEAVNDIKRSLNRLHQVFLD 236

Query:   232 MAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKK-RSWVCWVWAVG 284
             MAVLVETQ +++DDIE NVANAG+F+SGGTNSLYYANQ +KK +SWV WV  +G
Sbjct:   237 MAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSWVLWVSILG 290
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0005634 "nucleus" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289379 syn1A "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZPV9SY112_ARATHNo assigned EC number0.64070.98660.9672yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026750001
SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (299 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 2e-30
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 2e-20
pfam00804103 pfam00804, Syntaxin, Syntaxin 4e-11
pfam0573962 pfam05739, SNARE, SNARE domain 6e-11
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 2e-10
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 1e-08
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 3e-08
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 6e-06
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  111 bits (280), Expect = 2e-30
 Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 45  FFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVK 104
           FF+EV+ I+G +++I+  + +LQ L+    +         L+  +ES V  I + AK +K
Sbjct: 4   FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAP--DADPELKQELESLVQEIKKLAKEIK 61

Query: 105 ARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYK 164
            +L+ L++SN  N  L+     GSSVDR R +  +GL  K  ++M +F   + K    YK
Sbjct: 62  GKLKELEESNEQNEALN-----GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYK 116

Query: 165 EDLKRRYYNATGEEPSEDVIEKVISGSG 192
           E ++R+     GE   E++ + + SG+ 
Sbjct: 117 ERIQRQLEITGGEATDEELEDMLESGNS 144

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.98
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.94
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.89
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.88
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.66
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.56
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.52
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.44
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.31
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.93
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.55
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.1
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.83
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.67
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 96.77
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 96.55
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.4
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 93.03
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 92.22
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 92.2
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 88.74
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 88.07
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 86.03
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 85.62
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 84.76
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 84.61
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 84.33
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 83.43
COG4980115 GvpP Gas vesicle protein [General function predict 82.37
PRK1476227 membrane protein; Provisional 82.27
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 81.28
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4e-56  Score=402.79  Aligned_cols=284  Identities=32%  Similarity=0.535  Sum_probs=247.1

Q ss_pred             CCchhhhhhhhhHHhhHhhhhhhhhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChh
Q 022319            1 MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGK   80 (299)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~   80 (299)
                      |||++..+|..+.      ..|+|++ +++...+.+.++..|+.||..|++|+..|..+...+.+|..+|..++.  ++.
T Consensus         1 M~d~~~~~~~~~~------~~~~e~~-~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~--~~~   71 (297)
T KOG0810|consen    1 MNDRLSELLARSV------SEDNELD-DVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH--SPN   71 (297)
T ss_pred             CccccHHHHcCch------hhccccc-ccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--ccc
Confidence            9999999999887      5677776 443211223345789999999999999999999999999999976554  455


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319           81 VLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVL  160 (299)
Q Consensus        81 ~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~  160 (299)
                      ..+.++++|+.++.++.+.++.|+.+|+.+++++...+..    .+.++..|+|++|+..++++|.++|.+|+.+|.+|+
T Consensus        72 ~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~----~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r  147 (297)
T KOG0810|consen   72 ADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQ----NRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYR  147 (297)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999998753211    123456799999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccchhh------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319          161 SDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILE------GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAV  234 (299)
Q Consensus       161 ~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~~~q------~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~  234 (299)
                      .+|+.++.|+|..+.|..++||+++.++++|++++|++      |..+.+|.++++||.+|.+||++|.|||+||.|||+
T Consensus       148 ~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~  227 (297)
T KOG0810|consen  148 EEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAV  227 (297)
T ss_pred             HHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998766655544899999999999999999988      345699999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhhc
Q 022319          235 LVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLIILLVCLISLLT  297 (299)
Q Consensus       235 LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv~lvi~~~i~~  297 (299)
                      ||+.||||||+||+||.+|.+||++|..++.+|.+||+++ ||.||+|++++|+++|+++++++
T Consensus       228 LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~  291 (297)
T KOG0810|consen  228 LVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVV  291 (297)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcc
Confidence            9999999999999999999999999999999999999999 88888877777777777777754

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>COG4980 GvpP Gas vesicle protein [General function prediction only] Back     alignment and domain information
>PRK14762 membrane protein; Provisional Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 5e-11
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 2e-09
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 8e-07
1jth_B77 Crystal Structure And Biophysical Properties Of A C 1e-06
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 2e-06
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 6e-06
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 1e-05
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 1e-05
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 1e-05
3rk2_B65 Truncated Snare Complex Length = 65 1e-05
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 2e-05
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 25  ADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRG 84
           A+  IE   L+ + E  +  FF  V  I+  +E+I   +  +  L+  +    S +    
Sbjct: 26  AEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDR 85
Query: 85  LRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQA-FKEGS-SVD-RTRISVTNGL 141
           L ++++  +A I      ++A L+ ++K N   R   +  F++G+ S D R R S  + L
Sbjct: 86  LNEKLQDTMARISALGNKIRADLKQIEKEN--KRAQQEGTFEDGTVSTDLRIRQSQHSSL 143
Query: 142 RVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPS--EDVIEKVISGSGKVEILEG 199
             K   +M  +  ++ +    Y E++ R+       EPS  +D I+KVI   G   I  G
Sbjct: 144 SRKFVKVMTRYNDVQAENKRRYGENVARQCRVV---EPSLSDDAIQKVIE-HGTEGIFSG 199
Query: 200 ----KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGN 255
                 E  +   ++RH+ +  ++RSL +LH++F DM+ LV +Q E +D IE +V  + N
Sbjct: 200 MRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHN 259
Query: 256 FISGGTNSLYYA 267
           ++   T  +  A
Sbjct: 260 YVKKATEQVVQA 271
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 1e-39
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 2e-34
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 4e-30
1s94_A180 S-syntaxin; three helix bundle, structural plastic 3e-20
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 2e-18
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 5e-16
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 6e-16
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 6e-16
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 2e-15
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 3e-14
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 1e-13
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
 Score =  139 bits (350), Expect = 1e-39
 Identities = 54/270 (20%), Positives = 118/270 (43%), Gaps = 3/270 (1%)

Query: 7   KSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDL 66
           +   +  +  + +     A+  IE   L+ + E  +  FF  V  I+  +E+I   +  +
Sbjct: 8   RQMAAENQPAEASDAAGGAEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQV 67

Query: 67  QNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKE 126
             L+  +    S +    L ++++  +A I      ++A L+ ++K N   +        
Sbjct: 68  AQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDG 127

Query: 127 GSSVD-RTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIE 185
             S D R R S  + L  K   +M  +  ++ +    Y E++ R+          + + +
Sbjct: 128 TVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQK 187

Query: 186 KVISGSGKV--EILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKM 243
            +  G+  +   +     E  +   ++RH+ +  ++RSL +LH++F DM+ LV +Q E +
Sbjct: 188 VIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMI 247

Query: 244 DDIEENVANAGNFISGGTNSLYYANQTRKK 273
           D IE +V  + N++   T  +  A   ++ 
Sbjct: 248 DRIEFSVEQSHNYVKKATEQVVQARHYQES 277
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.96
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.94
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.93
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.9
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.9
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.89
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.89
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.86
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.85
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.81
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.28
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.15
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 96.99
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.31
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 95.98
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 95.96
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 95.89
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.45
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 94.74
3b5n_D64 Protein transport protein SEC9; snare complex, syn 94.63
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.12
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 93.83
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.64
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 90.88
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 90.28
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=1.3e-46  Score=339.69  Aligned_cols=236  Identities=20%  Similarity=0.354  Sum_probs=195.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 022319           37 RDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMI  116 (299)
Q Consensus        37 ~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~  116 (299)
                      .++++|+.||..|++|+..|..|..++.+|.++|.++++.+++  ...++.+|+.++.+++++++.|+.+|+.|+..+..
T Consensus        25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~  102 (267)
T 1dn1_B           25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ  102 (267)
T ss_dssp             --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3467899999999999999999999999999999988776554  34789999999999999999999999999987542


Q ss_pred             hhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccch
Q 022319          117 NRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEI  196 (299)
Q Consensus       117 ~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~~  196 (299)
                         .+ ++.+++++.|+|++|+.+|+++|+++|.+|+.+|..|+.+++.++.| |+.|.||++|++++++++++|+++.|
T Consensus       103 ---~~-~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R-q~~i~~~~~tdeeie~~ie~g~~~~f  177 (267)
T 1dn1_B          103 ---EE-GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR-QLEITGRTTTSEELEDMLESGNPAIF  177 (267)
T ss_dssp             ---HH-HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHTCSSCTT
T ss_pred             ---cc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhccCCCCCHHHHHHHHhCCcHHHH
Confidence               12 23344567899999999999999999999999999999999999985 67788999999999999999988888


Q ss_pred             hhh------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319          197 LEG------KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQT  270 (299)
Q Consensus       197 ~q~------~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~  270 (299)
                      .++      .++.++.++++||++|.+||++|.|||+||.|||.||++||++||+||+||++|..||+.|..+|.+|.+|
T Consensus       178 ~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~  257 (267)
T 1dn1_B          178 ASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  257 (267)
T ss_dssp             TTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            653      34589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhh-hHHHH
Q 022319          271 RKKR-SWVCW  279 (299)
Q Consensus       271 qk~~-k~~c~  279 (299)
                      |+++ ||.||
T Consensus       258 q~~~rkk~~~  267 (267)
T 1dn1_B          258 QSKARRKKIM  267 (267)
T ss_dssp             ----------
T ss_pred             HHHhcCcccC
Confidence            9999 77775
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 4e-22
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 2e-21
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (221), Expect = 4e-22
 Identities = 33/208 (15%), Positives = 82/208 (39%), Gaps = 22/208 (10%)

Query: 41  NLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKA 100
           +   F  ++  I  ++++  + +  + +L++   +  + +    LR  +++ VA      
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62

Query: 101 KIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVL 160
             +K  ++S  +                  D  + +     R +   L+ D++ +     
Sbjct: 63  FKLKNEIKSAQRD--------------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYK 108

Query: 161 SDYKEDLKRRYYNATGEEPSEDVIEKVISGSG--------KVEILEGKTEKDIQRSKERH 212
            + KE  KR+Y     E   ++V   +    G              G+ +  +   + RH
Sbjct: 109 EENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARH 168

Query: 213 EAVMDIQRSLTKLHQVFLDMAVLVETQE 240
           + ++ +++S+ +L Q+F DM  LV  Q+
Sbjct: 169 QELLKLEKSMAELTQLFNDMEELVIEQQ 196
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.94
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.82
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 87.29
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 83.37
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=7.8e-26  Score=191.34  Aligned_cols=185  Identities=20%  Similarity=0.354  Sum_probs=159.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 022319           41 NLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRML  120 (299)
Q Consensus        41 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~  120 (299)
                      .++.||+.|++|+..|..|+.++..|..++.+++..+++.+...++.+++.++.+++.+++.++..++.++..       
T Consensus         3 d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~-------   75 (196)
T d1fioa_           3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD-------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence            4789999999999999999999999999999988888888888999999999999999999998888777543       


Q ss_pred             hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCc-cchhh-
Q 022319          121 SQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGK-VEILE-  198 (299)
Q Consensus       121 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~-~~~~q-  198 (299)
                             .+..+++++++..|+.+|.+++..|+.+|..|...++.++.|+ ..+.+|++++++++.....++. +.+.+ 
T Consensus        76 -------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (196)
T d1fioa_          76 -------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ-YMIIQPEATEDEVEAAISDVGGQQIFSQA  147 (196)
T ss_dssp             -------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCTTCCHHHHHHHTSHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccCCCccchhhhHhhccccchHHHHHH
Confidence                   1235788999999999999999999999999999999998865 4566789999999887765433 33333 


Q ss_pred             -------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319          199 -------GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQE  240 (299)
Q Consensus       199 -------~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQG  240 (299)
                             +.....+.++++||++|.+||++|.|||+||.|||+||.+|.
T Consensus       148 ~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         148 LLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             TC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence                   122478899999999999999999999999999999999983
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure