Citrus Sinensis ID: 022323

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPLHRNDDGKRT
cccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccc
ccEEEEEccccccccccccccccccEEEEccccccccccccccccccEEEEEcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccHHHHHHHccccHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccEEEEEEcccccEEEEcccccccccccccccccccEcccccccccccccEcccccccc
matfsfcsnfpsptsslskfgsskpliifpsngthnrlsssihspptsifcsatkgpssdnipnnfsiiegpeTLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKvidesgeeeasempeipssipflpyvtpktLKQLYLTSLSFISGIILfggliaptlelklglggtsyEDFIRNmhlpmqlsqvdpivasfsGGAVGVISALMLIEANNVEQQEKKrckychgsgylacarcsssgvclsvdpistsnasngplrvpttqrcpncsgdvpelplhrnddgkrt
matfsfcsnfpsptsslskfgsSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGlkvidesgeeeasempeipssipFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPIStsnasngplrvpttqrcpncsgdvpelplhrnddgkrt
MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVidesgeeeasempeipssipFLPYVTPKTLKQLYLTslsfisgiilfggliAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPLHRNDDGKRT
*****************************************************************FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVI*****************IPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVD*****************************************
*********FP******************************************************FSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQ**************************IPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPLH********
*******************FGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDE**********EIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPLH********
*ATFSFCSNFPSPTSSLSKFGSSKPLIIFPSN*************P*SIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK**************EIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPLHRND*****
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MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKGPSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPLHRNDDGKRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
225440823315 PREDICTED: uncharacterized protein LOC10 0.943 0.895 0.684 1e-107
224088517248 predicted protein [Populus trichocarpa] 0.735 0.887 0.840 1e-107
356498741319 PREDICTED: uncharacterized protein LOC10 0.799 0.749 0.779 1e-106
255578979307 conserved hypothetical protein [Ricinus 0.903 0.879 0.695 1e-105
449451152324 PREDICTED: uncharacterized protein LOC10 0.752 0.694 0.835 1e-105
363807886312 uncharacterized protein LOC100794571 [Gl 0.782 0.75 0.791 1e-101
22326624315 chaperone protein dnaJ-like protein [Ara 0.869 0.825 0.679 1e-100
297810711314 hypothetical protein ARALYDRAFT_487416 [ 0.869 0.828 0.676 9e-99
8978349319 unnamed protein product [Arabidopsis tha 0.882 0.827 0.669 7e-96
388515629320 unknown [Lotus japonicus] 0.775 0.725 0.786 2e-91
>gi|225440823|ref|XP_002282029.1| PREDICTED: uncharacterized protein LOC100261394 [Vitis vinifera] gi|147792025|emb|CAN62037.1| hypothetical protein VITISV_021370 [Vitis vinifera] gi|297740143|emb|CBI30325.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/288 (68%), Positives = 231/288 (80%), Gaps = 6/288 (2%)

Query: 1   MATFSFCSNFPSPTSSLSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIFCSATKG---- 56
           MA+  F S   +P S+ +   S   + I   +G   RLS       + I C++ K     
Sbjct: 1   MASLLFFSQ-SAPISAWNSTSSKALICITALHGNPKRLSLHRRISRSQIICASGKDFSDP 59

Query: 57  -PSSDNIPNNFSIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKG 115
            P  D  P+NF IIEGPET+QDFVQMQ++EI+DNI  RRN+IF LMEE+RRLRVQQRIK 
Sbjct: 60  LPDGDTNPSNFCIIEGPETVQDFVQMQVQEIQDNISSRRNKIFLLMEEVRRLRVQQRIKS 119

Query: 116 LKVIDESGEEEASEMPEIPSSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLEL 175
           +KV DE+GEEEA+EMP++PSSIPFLP+VT +TLKQLYLTS SFIS II+FGGL+APTLEL
Sbjct: 120 VKVFDENGEEEANEMPDMPSSIPFLPHVTKRTLKQLYLTSFSFISAIIIFGGLLAPTLEL 179

Query: 176 KLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCK 235
           KLGLGGTSYEDFIR+MHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQ EKKRCK
Sbjct: 180 KLGLGGTSYEDFIRSMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQHEKKRCK 239

Query: 236 YCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSG 283
           YC+G GYL CARCS+SGVCLS++PIS S+AS+ PL+ P T+RCPNCSG
Sbjct: 240 YCNGKGYLPCARCSASGVCLSIEPISVSSASDRPLKAPATRRCPNCSG 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088517|ref|XP_002308463.1| predicted protein [Populus trichocarpa] gi|222854439|gb|EEE91986.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356498741|ref|XP_003518208.1| PREDICTED: uncharacterized protein LOC100778068 [Glycine max] Back     alignment and taxonomy information
>gi|255578979|ref|XP_002530342.1| conserved hypothetical protein [Ricinus communis] gi|223530146|gb|EEF32058.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449451152|ref|XP_004143326.1| PREDICTED: uncharacterized protein LOC101214251 [Cucumis sativus] gi|449508430|ref|XP_004163310.1| PREDICTED: uncharacterized LOC101214251 [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807886|ref|NP_001242702.1| uncharacterized protein LOC100794571 [Glycine max] gi|255640133|gb|ACU20357.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|22326624|ref|NP_196231.2| chaperone protein dnaJ-like protein [Arabidopsis thaliana] gi|18176020|gb|AAL59969.1| unknown protein [Arabidopsis thaliana] gi|22136730|gb|AAM91684.1| unknown protein [Arabidopsis thaliana] gi|332003591|gb|AED90974.1| chaperone protein dnaJ-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297810711|ref|XP_002873239.1| hypothetical protein ARALYDRAFT_487416 [Arabidopsis lyrata subsp. lyrata] gi|297319076|gb|EFH49498.1| hypothetical protein ARALYDRAFT_487416 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8978349|dbj|BAA98202.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388515629|gb|AFK45876.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2152845315 AT5G06130 [Arabidopsis thalian 0.892 0.847 0.595 1.6e-77
TAIR|locus:2151556307 AT5G61670 "AT5G61670" [Arabido 0.752 0.732 0.566 4.8e-62
TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 162/272 (59%), Positives = 187/272 (68%)

Query:    17 LSKFGSSKPLIIFPSNGTHNRLSSSIHSPPTSIF-CSATKG----PSSDNIPNNFSIIEG 71
             LS   +SK L+ FPS+      S   H    S+  CS        PS D +PNNF IIEG
Sbjct:    16 LSSPSTSKSLLRFPSSYLKPSPSLLFHGSSRSLLSCSDGSNNRPPPSGDTVPNNFCIIEG 75

Query:    72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVXXXXXXXXXXXXX 131
              ET+QDFVQMQL+EI+DNI+ RRN+IF LMEE+RRLRVQQRIK +K              
Sbjct:    76 SETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSELEATEMP 135

Query:   132 XXXXXXXFLPYVTPKTLKQLYLTXXXXXXXXXXXXXXXAPTLELKLGLGGTSYEDFIRNM 191
                    FLP VTPKTLKQLY T               AP LELK+GLGGTSYEDFIR++
Sbjct:   136 EITSSIPFLPNVTPKTLKQLYSTSVALISGIIFFGGLIAPNLELKVGLGGTSYEDFIRSL 195

Query:   192 HLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQEKKRCKYCHGSGYLACARCSSS 251
             HLP+QLSQVDPIVASFSGGAVGVIS LMLIE NNV+QQEKKRCKYC G+GYL CARCS+S
Sbjct:   196 HLPLQLSQVDPIVASFSGGAVGVISTLMLIEVNNVKQQEKKRCKYCLGTGYLPCARCSAS 255

Query:   252 GVCLSVDPISTSNASNGPLRVPTTQRCPNCSG 283
             GVCLS+DPI+   A+N  ++V TT+RC NCSG
Sbjct:   256 GVCLSIDPITRPRATNQLMQVATTKRCLNCSG 287
GO:0005739 "mitochondrion" evidence=ISM
TAIR|locus:2151556 AT5G61670 "AT5G61670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.640.1
hypothetical protein (248 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
PLN03165111 chaperone protein dnaJ-related; Provisional 98.45
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 97.21
KOG2813 406 consensus Predicted molecular chaperone, contains 96.71
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 96.62
PRK14296 372 chaperone protein DnaJ; Provisional 96.48
PRK14285 365 chaperone protein DnaJ; Provisional 96.35
PRK14286 372 chaperone protein DnaJ; Provisional 96.33
PRK14282 369 chaperone protein DnaJ; Provisional 96.33
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 96.31
PTZ00037 421 DnaJ_C chaperone protein; Provisional 96.3
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 96.28
PRK14301 373 chaperone protein DnaJ; Provisional 96.24
PRK14279 392 chaperone protein DnaJ; Provisional 96.23
PRK10767 371 chaperone protein DnaJ; Provisional 96.17
PRK14276 380 chaperone protein DnaJ; Provisional 96.16
PRK14284 391 chaperone protein DnaJ; Provisional 96.12
PRK14296 372 chaperone protein DnaJ; Provisional 96.1
PRK14286 372 chaperone protein DnaJ; Provisional 96.06
PRK14298 377 chaperone protein DnaJ; Provisional 96.06
PRK14300 372 chaperone protein DnaJ; Provisional 96.04
PRK14284 391 chaperone protein DnaJ; Provisional 96.03
KOG2813 406 consensus Predicted molecular chaperone, contains 96.01
PRK10767 371 chaperone protein DnaJ; Provisional 96.0
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 96.0
PRK14278 378 chaperone protein DnaJ; Provisional 95.97
PRK14285 365 chaperone protein DnaJ; Provisional 95.96
PRK14288 369 chaperone protein DnaJ; Provisional 95.95
PRK14294 366 chaperone protein DnaJ; Provisional 95.88
PRK14301 373 chaperone protein DnaJ; Provisional 95.85
PRK14279 392 chaperone protein DnaJ; Provisional 95.85
PRK14278 378 chaperone protein DnaJ; Provisional 95.85
PRK14288 369 chaperone protein DnaJ; Provisional 95.83
PRK14280 376 chaperone protein DnaJ; Provisional 95.83
PRK14293 374 chaperone protein DnaJ; Provisional 95.83
PRK14287 371 chaperone protein DnaJ; Provisional 95.81
PRK14280 376 chaperone protein DnaJ; Provisional 95.81
PRK14289 386 chaperone protein DnaJ; Provisional 95.8
PRK14295 389 chaperone protein DnaJ; Provisional 95.78
PRK14276 380 chaperone protein DnaJ; Provisional 95.75
PRK14282 369 chaperone protein DnaJ; Provisional 95.75
PRK14291 382 chaperone protein DnaJ; Provisional 95.7
PRK14297 380 chaperone protein DnaJ; Provisional 95.63
PRK14297 380 chaperone protein DnaJ; Provisional 95.6
PRK14277 386 chaperone protein DnaJ; Provisional 95.53
PRK14294 366 chaperone protein DnaJ; Provisional 95.49
PRK14277 386 chaperone protein DnaJ; Provisional 95.45
PRK14281 397 chaperone protein DnaJ; Provisional 95.4
PTZ00037 421 DnaJ_C chaperone protein; Provisional 95.4
PRK14293 374 chaperone protein DnaJ; Provisional 95.39
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 95.38
PRK14291 382 chaperone protein DnaJ; Provisional 95.34
PRK14295 389 chaperone protein DnaJ; Provisional 95.23
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 95.18
PRK14300 372 chaperone protein DnaJ; Provisional 95.14
PRK14281 397 chaperone protein DnaJ; Provisional 95.04
PRK14292 371 chaperone protein DnaJ; Provisional 94.96
PRK14290 365 chaperone protein DnaJ; Provisional 94.94
PRK14283 378 chaperone protein DnaJ; Provisional 94.9
PRK14287 371 chaperone protein DnaJ; Provisional 94.83
PRK14283 378 chaperone protein DnaJ; Provisional 94.81
PLN03165111 chaperone protein dnaJ-related; Provisional 93.93
PRK14292 371 chaperone protein DnaJ; Provisional 93.87
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 93.79
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 93.34
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 92.73
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 91.43
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 87.74
PRK14290 365 chaperone protein DnaJ; Provisional 85.62
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 85.3
PRK14298 377 chaperone protein DnaJ; Provisional 83.67
PRK14289 386 chaperone protein DnaJ; Provisional 82.99
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information 
Probab=98.45  E-value=2.2e-08  Score=82.89  Aligned_cols=75  Identities=24%  Similarity=0.455  Sum_probs=52.8

Q ss_pred             ceeeccCCchhH-HHHHHHHHhhhh-hhHhhcccccccCccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCC
Q 022323          203 IVASFSGGAVGV-ISALMLIEANNV-EQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPN  280 (299)
Q Consensus       203 IVASFsGGAVGV-isaLmvvEinnv-kqQEkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpN  280 (299)
                      |.|...|=|||. |-.||+-+++|. |+++...|..|+|+|+-.|.+|.|+|.+....  . +   ..    .....|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~-g---~~----q~~~~C~~   80 (111)
T PLN03165         11 ISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--G-G---GE----KEVSKCIN   80 (111)
T ss_pred             hhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--C-C---cE----EEEEECCC
Confidence            334444445554 567889999988 77888999999999999999999999885432  0 0   00    02556777


Q ss_pred             CCCCCcc
Q 022323          281 CSGDVPE  287 (299)
Q Consensus       281 CSGaGKv  287 (299)
                      |.|.|+.
T Consensus        81 C~G~Gk~   87 (111)
T PLN03165         81 CDGAGSL   87 (111)
T ss_pred             CCCccee
Confidence            7777764

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 97.55
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 97.52
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 97.3
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 97.3
1nlt_A 248 Protein YDJ1, mitochondrial protein import protein 96.88
1nlt_A 248 Protein YDJ1, mitochondrial protein import protein 96.83
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 95.34
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 94.37
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 93.76
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 91.95
2fiy_A309 Protein FDHE homolog; FDHE protein, structural gen 85.6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=97.55  E-value=2e-05  Score=60.90  Aligned_cols=33  Identities=24%  Similarity=0.566  Sum_probs=27.0

Q ss_pred             hhhhhHhhcccccccCcc------ccccccccCCceecc
Q 022323          224 NNVEQQEKKRCKYCHGSG------YLACARCSSSGVCLS  256 (299)
Q Consensus       224 nnvkqQEkkRCkYC~GTG------YL~CArCSgSGtl~~  256 (299)
                      ..++.++.+.|..|+|+|      .-.|..|.|+|.+..
T Consensus        21 ~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~   59 (104)
T 2ctt_A           21 KEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETI   59 (104)
T ss_dssp             TTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEE
T ss_pred             EEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEE
Confidence            345677889999999998      468999999998743
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d1nlta374 g.54.1.1 (A:139-212) Mitochondrial protein import 0.004
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 231 KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGD 284
            K+C  C+G G     R     +          + + G   +    RC +C+G 
Sbjct: 18  VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGT-GD-IIDPKDRCKSCNGK 69

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 97.39
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 97.29
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 96.52
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 96.3
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 88.9
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=1.8e-05  Score=57.13  Aligned_cols=52  Identities=23%  Similarity=0.568  Sum_probs=35.6

Q ss_pred             hcccccccCcccc-----ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcccc
Q 022323          231 KKRCKYCHGSGYL-----ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELP  289 (299)
Q Consensus       231 kkRCkYC~GTGYL-----~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvlp  289 (299)
                      +..|.-|+|+|+.     .|..|.|+|.+......-       ++.-.....|+.|.|.|++++
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g-------~~~~~~~~~C~~C~G~G~~i~   58 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMG-------PMIQRFQTECDVCHGTGDIID   58 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESS-------SEEEEEECSCTTCSSSSSCCC
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEec-------CcEEEEEEECccCccceEEeC
Confidence            5689999999965     499999999875443221       000112456888888888764
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure