Citrus Sinensis ID: 022328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEHEEcccccccccEEEEEHHHHHccccccccccccccEEEccccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHcccccHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mylkkplwsegvEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVaesdstihffcqsqsvpelqvvpvlfqhsfkedsvderVTSLdhiftvdpmrvtspstDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSlmldssanqldfeACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGhvngrqlspmatIHEDIRRLLGEKSASLIWAASqfgstlnpEERLMALHIQARRVLESLDLY
Flexible Loop (DISEMBL)
mylkkplwsegvEKQMESETETAAATAVGElanslkqqrVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHiftvdpmrvtspSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHvngrqlspMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Low Complexity Region (SEG)
MYLKKPLWSEGVEKQMesetetaaataVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENlrlrcgefllllIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Disordered region (IsUnstruct)
***************************************VQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARR********
Disordered Region (DISOPRED)
***K*P********************************RVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRS*AE**STIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVN***********EDIRRLLGEKSASLIWAASQFGSTLN*EE***ALHIQARRVLESLDLY
Disordered Region (DISEMBL)
MYLKKPLWS**************AATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Disordered Region (DISPRO)
**************************AVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
302143939	374	unnamed protein product [Vitis vinifera]	0.996	0.796	0.769	1e-131
225455310	298	PREDICTED: uncharacterized protein LOC10	0.996	1.0	0.769	1e-131
449456405	304	PREDICTED: uncharacterized protein LOC10	0.996	0.980	0.757	1e-129
55956221	294	impaired sucrose induction 1-like protei	0.983	1.0	0.752	1e-128
55956223	310	impaired sucrose induction 1-like protei	0.949	0.916	0.757	1e-124
30687718	305	impaired sucrose induction 1 protein [Ar	0.996	0.977	0.712	1e-123
388513219	296	unknown [Lotus japonicus]	0.973	0.983	0.740	1e-123
363806946	309	uncharacterized protein LOC100808750 [Gl	1.0	0.967	0.724	1e-122
224125694	308	predicted protein [Populus trichocarpa]	1.0	0.970	0.717	1e-122
357474329	306	Impaired sucrose induction 1-like protei	1.0	0.977	0.702	1e-120

>gi|302143939|emb|CBI23044.3| unnamed protein product [Vitis vinifera]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 262/299 (87%), Gaps = 1/299 (0%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKK LWSE +      +     ATAVG+L  SL +QR+ RE+TLALRTGLR+ARAEFS
Sbjct: 77  MYLKKALWSESMATPESDQKAPYPATAVGDLVTSLNRQRLYREVTLALRTGLREARAEFS 136

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLD 120
           FLRVRGLRS+LK LRSVAESDSTI+ FC SQS+PELQVVPVLFQ+S K+   D  V +LD
Sbjct: 137 FLRVRGLRSILKFLRSVAESDSTINLFCHSQSIPELQVVPVLFQNSLKQYEEDT-VANLD 195

Query: 121 HIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE 180
           HIF V+PM+++SPSTDAEVALALRVLEGCCLLHRES I AH+HKAI+ILM+ILSTRG LE
Sbjct: 196 HIFGVEPMKISSPSTDAEVALALRVLEGCCLLHRESTIFAHQHKAIEILMDILSTRGVLE 255

Query: 181 QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVN 240
           QGACLDAL S+MLDSSANQ+DFE+C+GIEEVA +IRDKQVDENLR++CGEFLLLLIGHVN
Sbjct: 256 QGACLDALISIMLDSSANQMDFESCDGIEEVAHIIRDKQVDENLRMKCGEFLLLLIGHVN 315

Query: 241 GRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 299
           GR+  P+A IHED+RRLLGEKSASLIWAASQFGSTL+PE+RL ALHIQARRVLESLDLY
Sbjct: 316 GRERPPLARIHEDVRRLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLESLDLY 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455310|ref|XP_002275469.1| PREDICTED: uncharacterized protein LOC100241859 [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 262/299 (87%), Gaps = 1/299 (0%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKK LWSE +      +     ATAVG+L  SL +QR+ RE+TLALRTGLR+ARAEFS
Sbjct: 1   MYLKKALWSESMATPESDQKAPYPATAVGDLVTSLNRQRLYREVTLALRTGLREARAEFS 60

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLD 120
           FLRVRGLRS+LK LRSVAESDSTI+ FC SQS+PELQVVPVLFQ+S K+   D  V +LD
Sbjct: 61  FLRVRGLRSILKFLRSVAESDSTINLFCHSQSIPELQVVPVLFQNSLKQYEEDT-VANLD 119

Query: 121 HIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE 180
           HIF V+PM+++SPSTDAEVALALRVLEGCCLLHRES I AH+HKAI+ILM+ILSTRG LE
Sbjct: 120 HIFGVEPMKISSPSTDAEVALALRVLEGCCLLHRESTIFAHQHKAIEILMDILSTRGVLE 179

Query: 181 QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVN 240
           QGACLDAL S+MLDSSANQ+DFE+C+GIEEVA +IRDKQVDENLR++CGEFLLLLIGHVN
Sbjct: 180 QGACLDALISIMLDSSANQMDFESCDGIEEVAHIIRDKQVDENLRMKCGEFLLLLIGHVN 239

Query: 241 GRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 299
           GR+  P+A IHED+RRLLGEKSASLIWAASQFGSTL+PE+RL ALHIQARRVLESLDLY
Sbjct: 240 GRERPPLARIHEDVRRLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLESLDLY 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456405|ref|XP_004145940.1| PREDICTED: uncharacterized protein LOC101204796 [Cucumis sativus] gi|449531007|ref|XP_004172479.1| PREDICTED: uncharacterized protein LOC101231506 [Cucumis sativus]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/305 (75%), Positives = 262/305 (85%), Gaps = 7/305 (2%)

Query: 1   MYLKKPLWSEGVEKQM------ESETETAAATAVGELANSLKQQRVQREITLALRTGLRD 54
           MYLKK LW++G+          + ++ +A ++AVGEL NSL +QR+ RE+T ALRTGLRD
Sbjct: 1   MYLKKALWTDGLTPNPSADSLPDDQSASATSSAVGELVNSLNRQRLFREVTFALRTGLRD 60

Query: 55  ARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDE 114
           A AEFSFLRV GLRSLLK LRS+AES+STI  FCQ+QSVPELQVVPVLFQ S KE S D+
Sbjct: 61  ASAEFSFLRVCGLRSLLKSLRSIAESNSTIELFCQTQSVPELQVVPVLFQQSLKE-SEDD 119

Query: 115 RVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILS 174
            V +LDHIF V+P+++ SPSTDAEVALALRVLEGCCLLHRES  LAH+HKAI +LMNILS
Sbjct: 120 PVVNLDHIFGVEPLKIASPSTDAEVALALRVLEGCCLLHRESTALAHQHKAIPVLMNILS 179

Query: 175 TRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLL 234
            RG LEQGACLDAL S+MLDSSANQ+DFE CNGIEEVA LIRDKQ+DENLRL+CGEFLLL
Sbjct: 180 IRGILEQGACLDALISVMLDSSANQMDFEVCNGIEEVAVLIRDKQIDENLRLKCGEFLLL 239

Query: 235 LIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLE 294
           LIGHVNGR   P+ATIHEDIR+LLGEKSASLIWAASQFGSTL+PE+RL ALHIQARRVLE
Sbjct: 240 LIGHVNGRGRPPLATIHEDIRQLLGEKSASLIWAASQFGSTLDPEQRLTALHIQARRVLE 299

Query: 295 SLDLY 299
           SLDLY
Sbjct: 300 SLDLY 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55956221|emb|CAG26906.1| impaired sucrose induction 1-like protein [Solanum tuberosum]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/299 (75%), Positives = 260/299 (86%), Gaps = 5/299 (1%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLK P WS    K   SE++T + +AV EL +SL++QR+ RE+TLALRTGL DARAEFS
Sbjct: 1   MYLKAPFWS----KDSNSESQTESPSAVAELISSLERQRLYREVTLALRTGLSDARAEFS 56

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLD 120
           FLR+RGLR +LK LRSVAESD+TI+ FC SQS+P+LQVVPVLF+HS + D+ D+ VTSLD
Sbjct: 57  FLRIRGLRVILKFLRSVAESDTTINLFCHSQSIPDLQVVPVLFRHSLR-DTEDQNVTSLD 115

Query: 121 HIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE 180
           HIFTV+PM +TSPSTD+EV+LALRVLEGCCL+H ES +LAH++KAI +LMNILSTRG L 
Sbjct: 116 HIFTVEPMEITSPSTDSEVSLALRVLEGCCLIHCESNVLAHQYKAIPVLMNILSTRGVLG 175

Query: 181 QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVN 240
           QGACLDAL ++MLDSSANQ DFEACNGIEEVA LIRDKQVDE LRL+CGEFLLLLIGHVN
Sbjct: 176 QGACLDALIAIMLDSSANQADFEACNGIEEVAILIRDKQVDEKLRLKCGEFLLLLIGHVN 235

Query: 241 GRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 299
           GR+  PMATIHEDIRR LGEKSASLIWAASQFGSTL+PE+RL AL IQ RRVLES+DLY
Sbjct: 236 GRERPPMATIHEDIRRFLGEKSASLIWAASQFGSTLDPEQRLTALQIQGRRVLESIDLY 294

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55956223|emb|CAG26907.1| impaired sucrose induction 1-like protein [Mesembryanthemum crystallinum]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/285 (75%), Positives = 252/285 (88%), Gaps = 1/285 (0%)

Query: 15  QMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKIL 74
           Q+ES + +AA  AV EL  SL Q ++ RE+TL+LR+GLRDARAEFSFLRVRGLR LLK L
Sbjct: 25  QVESPSTSAAMAAVEELVESLTQAKLYREVTLSLRSGLRDARAEFSFLRVRGLRCLLKFL 84

Query: 75  RSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPS 134
           RSVA+SDSTI  FC +QS+P+LQVVP LF+HS KE + +ERV +LDHIFTV+PM++TSPS
Sbjct: 85  RSVADSDSTIRLFCLTQSIPDLQVVPALFEHSLKE-TEEERVANLDHIFTVEPMKLTSPS 143

Query: 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLD 194
           TD EVALALRVLEGCCL+HR+S I AH+HKAI +LMNILS RG LEQGACLDAL +LMLD
Sbjct: 144 TDTEVALALRVLEGCCLIHRQSTIFAHQHKAILVLMNILSNRGVLEQGACLDALIALMLD 203

Query: 195 SSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDI 254
           S+ANQ+DFE CNGIEEVA +IRDKQVDENLR++CGEFLLLLIGHV+GR++ PMA++HEDI
Sbjct: 204 STANQMDFETCNGIEEVAAIIRDKQVDENLRMKCGEFLLLLIGHVDGREIQPMASVHEDI 263

Query: 255 RRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLESLDLY 299
           RRLL EKSASLIWAASQFGSTL PEER+ ALHIQARRVLESLDL+
Sbjct: 264 RRLLDEKSASLIWAASQFGSTLGPEERMTALHIQARRVLESLDLF 308

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687718|ref|NP_194505.2| impaired sucrose induction 1 protein [Arabidopsis thaliana] gi|28393094|gb|AAO41981.1| unknown protein [Arabidopsis thaliana] gi|28827484|gb|AAO50586.1| unknown protein [Arabidopsis thaliana] gi|55956219|emb|CAG26905.1| impaired sucrose induction 1 [Arabidopsis thaliana] gi|332659989|gb|AEE85389.1| impaired sucrose induction 1 protein [Arabidopsis thaliana]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/306 (71%), Positives = 262/306 (85%), Gaps = 8/306 (2%)

Query: 1   MYLKKPLWSEGVEKQME--SETET-----AAATAVGELANSLKQQRVQREITLALRTGLR 53
           MYLK+P+WS+G     E  SE+ET     AA+  V EL  SL  QR+ RE+TL+LRTGLR
Sbjct: 1   MYLKRPIWSDGASATPENPSESETGEESDAASMVVEELVTSLNTQRLYRELTLSLRTGLR 60

Query: 54  DARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVD 113
           DA AEFSFLR+RGLRSLLK LR+VA+SDS I  F  +Q++ +LQ+VPVLFQHS KE + D
Sbjct: 61  DACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLFSHTQTISDLQLVPVLFQHSLKE-AED 119

Query: 114 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 173
           ++VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEGCCLLH +S +LAHKH A++++MN+L
Sbjct: 120 DKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKHGAVRVMMNVL 179

Query: 174 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLL 233
           STRG LEQGACLDAL S++LDSSANQ+DF ACNGIEEVA L+RDKQ DENLRLRCGEFLL
Sbjct: 180 STRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFLL 239

Query: 234 LLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVL 293
           LL+GHVNG+  SP+A+++EDIRRLLGEKSASLIWAASQFGST +PE+R+ ALHIQA RVL
Sbjct: 240 LLVGHVNGKDRSPIASVNEDIRRLLGEKSASLIWAASQFGSTGDPEQRITALHIQAGRVL 299

Query: 294 ESLDLY 299
           ESLDLY
Sbjct: 300 ESLDLY 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513219|gb|AFK44671.1| unknown [Lotus japonicus]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/304 (74%), Positives = 251/304 (82%), Gaps = 13/304 (4%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKKPLWSEG+E   +         AV E+  SL+QQRV RE+TLALRTGLRDARAEFS
Sbjct: 1   MYLKKPLWSEGIESDSDG--------AVVEVVKSLQQQRVYREVTLALRTGLRDARAEFS 52

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKE---DSVDERVT 117
           FLRVR LRS+L  LRSVA+SDSTI  F Q+QS+PELQVVPVLFQHS KE   D  + R+ 
Sbjct: 53  FLRVRALRSILNFLRSVADSDSTIDLFNQTQSIPELQVVPVLFQHSLKETGEDYTENRLG 112

Query: 118 SLDHIFTVD--PMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST 175
            L HI  V+  P+++TSPSTD EVALALRVLEGCCLLH +S  LAH+H AI++LMNILS 
Sbjct: 113 DLTHILGVEVEPIKLTSPSTDHEVALALRVLEGCCLLHPQSTALAHQHNAIQVLMNILSN 172

Query: 176 RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLL 235
           RG LEQGACLDAL SLM+DSS NQ+DFE CNGI EVA+LIRDKQVDENLRL+CGEFLLLL
Sbjct: 173 RGVLEQGACLDALISLMVDSSPNQMDFEKCNGIMEVADLIRDKQVDENLRLKCGEFLLLL 232

Query: 236 IGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVLES 295
           IGHVNGR   P+ATIHED RRLLGEKSASLIWAASQFGSTL+PE+RL AL IQARRVLES
Sbjct: 233 IGHVNGRDSLPLATIHEDTRRLLGEKSASLIWAASQFGSTLDPEQRLTALQIQARRVLES 292

Query: 296 LDLY 299
           LDLY
Sbjct: 293 LDLY 296

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806946|ref|NP_001242053.1| uncharacterized protein LOC100808750 [Glycine max] gi|255636499|gb|ACU18588.1| unknown [Glycine max]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/309 (72%), Positives = 254/309 (82%), Gaps = 10/309 (3%)

Query: 1   MYLKKPLWSEGVEKQ---MESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARA 57
           MYLKKPLWSE  +      ++E E     AV E+  SL+QQRV RE+TLALRTGLRDARA
Sbjct: 1   MYLKKPLWSETGKDDGGSAKTEEEDHGDGAVSEVVKSLQQQRVYREVTLALRTGLRDARA 60

Query: 58  EFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDE--- 114
           EFSF RVR LRS+LK LRSVAES STI  F Q+QS+P+LQVVPVLF HS KE   D+   
Sbjct: 61  EFSFPRVRALRSILKFLRSVAESGSTIDLFNQTQSIPQLQVVPVLFHHSLKESGDDDYNE 120

Query: 115 ---RVTSLDHI-FTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILM 170
              +V  L HI F V+PM++TSPSTDAEVALALRVLEGCCLLH +S  LAH+H AI++LM
Sbjct: 121 KKIKVGDLSHILFGVEPMKLTSPSTDAEVALALRVLEGCCLLHPQSTALAHQHNAIQVLM 180

Query: 171 NILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGE 230
           NILSTRG LEQGACLDAL SLM+DSS+NQ+DFE C+GI EVA+L+RDKQ+DENLRL+CGE
Sbjct: 181 NILSTRGVLEQGACLDALISLMVDSSSNQMDFEKCSGIMEVADLLRDKQLDENLRLKCGE 240

Query: 231 FLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQAR 290
           FLLLLIGHVNGR   P+ATIHED RRLLGEKSASLIWAASQFGSTL+PE+RL AL IQAR
Sbjct: 241 FLLLLIGHVNGRDAPPLATIHEDTRRLLGEKSASLIWAASQFGSTLDPEQRLTALQIQAR 300

Query: 291 RVLESLDLY 299
           RVLESLDLY
Sbjct: 301 RVLESLDLY 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125694|ref|XP_002329695.1| predicted protein [Populus trichocarpa] gi|222870603|gb|EEF07734.1| predicted protein [Populus trichocarpa]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/308 (71%), Positives = 264/308 (85%), Gaps = 9/308 (2%)

Query: 1   MYLKKPLWSEGVEKQMESETE---------TAAATAVGELANSLKQQRVQREITLALRTG 51
           M+LKKPLWS  +++  E  ++         +A ATAV EL NSL +QR+ RE+TLALRT 
Sbjct: 1   MHLKKPLWSTALKETREPSSDAEPQPQQPSSATATAVDELVNSLNKQRLYREVTLALRTS 60

Query: 52  LRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDS 111
           LRDARAEFSFLR+RGLRSLL  LRSVA+SDSTI+ FCQ+QS+P+LQVVPVLFQ+S KE  
Sbjct: 61  LRDARAEFSFLRLRGLRSLLNFLRSVAQSDSTINLFCQTQSLPDLQVVPVLFQNSLKEGE 120

Query: 112 VDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMN 171
            ++ V SL H+F V+PMR+TSPSTDAE+ALALRVLEGCCLLHRES + AH++KAI++LM 
Sbjct: 121 EEQNVESLSHVFGVEPMRITSPSTDAEIALALRVLEGCCLLHRESTVFAHQYKAIQVLMR 180

Query: 172 ILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEF 231
           +LSTRG LE+ ACLDAL S+MLDSS NQ+DFEACNGIEEV  +IRDKQVDENLRL+CGEF
Sbjct: 181 VLSTRGVLEKSACLDALISIMLDSSPNQMDFEACNGIEEVTVVIRDKQVDENLRLKCGEF 240

Query: 232 LLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARR 291
           +LLLIGH+NGR+ +PM +IHED+RRLLGEKSASLIWAASQFGST++PE+RLMAL IQARR
Sbjct: 241 MLLLIGHLNGRERAPMPSIHEDVRRLLGEKSASLIWAASQFGSTVDPEQRLMALQIQARR 300

Query: 292 VLESLDLY 299
           VLESLDLY
Sbjct: 301 VLESLDLY 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474329|ref|XP_003607449.1| Impaired sucrose induction 1-like protein [Medicago truncatula] gi|355508504|gb|AES89646.1| Impaired sucrose induction 1-like protein [Medicago truncatula]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/306 (70%), Positives = 250/306 (81%), Gaps = 7/306 (2%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAA----TAVGELANSLKQQRVQREITLALRTGLRDAR 56
           MYLKKPLWSEG+E   +  T ++++     +V EL NSL+QQRV RE+TLAL TGLRDAR
Sbjct: 1   MYLKKPLWSEGIETTKQDSTGSSSSSDPNASVVELVNSLQQQRVYREVTLALTTGLRDAR 60

Query: 57  AEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVD--- 113
           AEFSFLR+R LRS+L  L S+A SDSTI+ F  +QS+P LQV+PVLFQHS KE   D   
Sbjct: 61  AEFSFLRLRALRSILNFLNSIAHSDSTIYLFNLTQSIPHLQVLPVLFQHSLKETGNDYNY 120

Query: 114 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 173
            RV  + HIF V+PM++TSPSTD E+ALALRVLEGCCLLH  S  LAH+H A+++L+NIL
Sbjct: 121 SRVGDMSHIFGVEPMKLTSPSTDDEIALALRVLEGCCLLHPHSTTLAHQHNAVQVLLNIL 180

Query: 174 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLL 233
           STRG LEQ ACLDAL SLM+DSS NQ+DFE CNGI EVA+LIRDKQVDENLRL+CGEFL 
Sbjct: 181 STRGVLEQSACLDALISLMVDSSPNQMDFEKCNGIMEVADLIRDKQVDENLRLKCGEFLQ 240

Query: 234 LLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVL 293
           LLIGHVNGR   P+A+IHED RRLLGE SASLIWAASQFGSTL+PE+RL AL IQARR+L
Sbjct: 241 LLIGHVNGRDSPPLASIHEDTRRLLGETSASLIWAASQFGSTLDPEQRLTALQIQARRIL 300

Query: 294 ESLDLY 299
           ESLDLY
Sbjct: 301 ESLDLY 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2137757	305	ISI1 "IMPAIRED SUCROSE INDUCTI	0.996	0.977	0.650	4.9e-101

TAIR|locus:2137757 ISI1 "IMPAIRED SUCROSE INDUCTION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 199/306 (65%), Positives = 242/306 (79%)

Query:     1 MYLKKPLWSEGVE-------KQMXXXXXXXXXXXVGELANSLKQQRVQREITLALRTGLR 53
             MYLK+P+WS+G         +             V EL  SL  QR+ RE+TL+LRTGLR
Sbjct:     1 MYLKRPIWSDGASATPENPSESETGEESDAASMVVEELVTSLNTQRLYRELTLSLRTGLR 60

Query:    54 DARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVD 113
             DA AEFSFLR+RGLRSLLK LR+VA+SDS I  F  +Q++ +LQ+VPVLFQHS KE + D
Sbjct:    61 DACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLFSHTQTISDLQLVPVLFQHSLKE-AED 119

Query:   114 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 173
             ++VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEGCCLLH +S +LAHKH A++++MN+L
Sbjct:   120 DKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKHGAVRVMMNVL 179

Query:   174 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENXXXXXXXXXX 233
             STRG LEQGACLDAL S++LDSSANQ+DF ACNGIEEVA L+RDKQ DEN          
Sbjct:   180 STRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFLL 239

Query:   234 XXIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQARRVL 293
               +GHVNG+  SP+A+++EDIRRLLGEKSASLIWAASQFGST +PE+R+ ALHIQA RVL
Sbjct:   240 LLVGHVNGKDRSPIASVNEDIRRLLGEKSASLIWAASQFGSTGDPEQRITALHIQAGRVL 299

Query:   294 ESLDLY 299
             ESLDLY
Sbjct:   300 ESLDLY 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       276   0.00079  115 3  11 22  0.46    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.74u 0.18s 21.92t   Elapsed:  00:00:01
  Total cpu time:  21.74u 0.18s 21.92t   Elapsed:  00:00:01
  Start:  Thu May  9 16:22:33 2013   End:  Thu May  9 16:22:34 2013

GO:0005634 "nucleus" evidence=ISM

GO:0009745 "sucrose mediated signaling" evidence=IMP

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037220001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (298 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam08045	255	pfam08045, CDC14, Cell division control protein 14	1e-22

>gnl|CDD|219711 pfam08045, CDC14, Cell division control protein 14, SIN component

 Score = 94.0 bits (234), Expect = 1e-22
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 8/190 (4%)

Query: 48  LRTGLRDARAEFSFLRVRG-LRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHS 106
           +R GLR   +  + L              S   +   +       ++ E   +   FQ+ 
Sbjct: 20  IRKGLRQVESLLASLCPSISKTRNSDTRESALNARKVLELLRDDPALREFFKLQDGFQY- 78

Query: 107 FKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAI 166
              +     VT+LD +  +          D  +  ALR+L+G  LLH  S  L  +   +
Sbjct: 79  ---NLASRLVTTLDRL--LGSGGNEQGQNDILILNALRLLQGLLLLHPPSRTLFSREANM 133

Query: 167 KILMNILSTRGALE-QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLR 225
            +L+++L        Q A +  L  ++L +  N   FE  NG+  V  L +     + L 
Sbjct: 134 NLLLDLLEPANPPAIQVATISTLVHILLKNPTNTRTFERLNGLSTVISLFKLSSTQQELN 193

Query: 226 LRCGEFLLLL 235
            +  EFL   
Sbjct: 194 FKIIEFLYFY 203

Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF08045	257	CDC14: Cell division control protein 14, SIN compo	100.0
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	95.79
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	93.88
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	92.14
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.19
PF05536	543	Neurochondrin: Neurochondrin	89.14

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=100.00  E-value=3.4e-57  Score=412.18  Aligned_cols=241  Identities=29%  Similarity=0.404  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhccccchhhhhccCCcCCccchhhhhccccc
Q 022328           29 GELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFK  108 (299)
Q Consensus        29 ~elv~sl~~qR~yRevtlaLR~gLRDa~AeFSFlR~rglr~ll~fl~s~a~sd~~i~LF~~sQs~~~lQvvPvLF~hsl~  108 (299)
                      ||-.-|+..++||+|.++++|+|||++++.|+|++.++.++.-++.|+++.++++|..|+++|+++++|++|+.|+|.+.
T Consensus         1 ME~~ls~~~d~L~s~~~~~ir~GLrq~~~lL~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~eF~~LQ~~Fe~Nl~   80 (257)
T PF08045_consen    1 MESLLSLAFDNLYSEDTPKIRKGLRQLEGLLAQLCLSIRQSRNSSKRSSAASRKGLELFRDDPALREFQKLQEGFEWNLA   80 (257)
T ss_pred             CchHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccccccccccchhhccchhhhhcccchhHHHHHHhHHHhhcchh
Confidence            45667899999999999999999999999999999999888888889999999999999999999999999999999994


Q ss_pred             ccccCCccccccccccCCC-ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHH-hhcCcchhhhHHH
Q 022328          109 EDSVDERVTSLDHIFTVDP-MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL-STRGALEQGACLD  186 (299)
Q Consensus       109 ~~~~~~~V~~l~~i~g~ep-~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL-~~rg~leq~AcLD  186 (299)
                          ...|.++++++|.++ ++.++|+||.+|++||||||||||+||+|+.++||+++++++||+| .++++.+|+||||
T Consensus        81 ----~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~  156 (257)
T PF08045_consen   81 ----SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLD  156 (257)
T ss_pred             ----hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHH
Confidence                678999999999999 8999999999999999999999999999999999999999999999 5689999999999


Q ss_pred             HHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcccCCCCCCc------------ccHHHHH
Q 022328          187 ALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPM------------ATIHEDI  254 (299)
Q Consensus       187 tLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~~~~~~~~~------------a~~~ed~  254 (299)
                      ||+|+|+|+|+|+|+||+++|++.|++++|++++++++||||+||||||++++.++..+.-            -+-++++
T Consensus       157 tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~~~~~~~~~~~t~~eKq~l  236 (257)
T PF08045_consen  157 TLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSSSSGSEGRATKTTEEKQEL  236 (257)
T ss_pred             HHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcccccccCCCcCcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999864321            2355666


Q ss_pred             HHHhchhhHHHHHHhhhcc
Q 022328          255 RRLLGEKSASLIWAASQFG  273 (299)
Q Consensus       255 ~~llGe~~asliwaa~~fg  273 (299)
                      -+-.+.++.++|-+...++
T Consensus       237 l~~~~~~vd~Lv~dL~~~~  255 (257)
T PF08045_consen  237 LGRYLSNVDDLVEDLNELK  255 (257)
T ss_pred             HHHhcccHHHHHHHHHHhc
Confidence            6667777888887766554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=95.79  E-value=0.056  Score=39.88  Aligned_cols=97  Identities=16%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             CChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHH
Q 022328          134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAE  213 (299)
Q Consensus       134 sTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~  213 (299)
                      +++.-..-+++.|...|-..+++....-+..+++.++++|....+-.+..++=+|--+.-+.+++...+.+.+++..+.+
T Consensus        19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~   98 (120)
T cd00020          19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN   98 (120)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence            34667788899999999988888888888899999999999988889999999999998888888888988899999999


Q ss_pred             HHhhcccccchhhhHhHHH
Q 022328          214 LIRDKQVDENLRLRCGEFL  232 (299)
Q Consensus       214 llK~~q~d~~vRlKC~EFL  232 (299)
                      ++.+.  +.++|-.+..+|
T Consensus        99 ~l~~~--~~~~~~~a~~~l  115 (120)
T cd00020          99 LLDSS--NEDIQKNATGAL  115 (120)
T ss_pred             HHhcC--CHHHHHHHHHHH
Confidence            99887  566776665554

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=93.88  E-value=0.18  Score=37.15  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhh
Q 022328          162 KHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       162 r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~  237 (299)
                      +...++.++++|....+.....++.+|-.+-.+++++...|-+.+|++.+.+++.+.  +.++|..|+-.|.-+..
T Consensus         5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA   78 (120)
T ss_pred             HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc
Confidence            455788899999888778889999999999999999999999999999999999984  78999888888776653

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.14  E-value=0.87  Score=44.76  Aligned_cols=119  Identities=21%  Similarity=0.219  Sum_probs=99.3

Q ss_pred             ccCCCccccCCCChHHH-HHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchh-hhHHHHHHHHHhCCChhhh
Q 022328          123 FTVDPMRVTSPSTDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQ-GACLDALTSLMLDSSANQL  200 (299)
Q Consensus       123 ~g~ep~kit~psTdsEI-~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq-~AcLDtLl~lmvDSs~N~~  200 (299)
                      =|-.|+---.-.+|++| ++|.|||--|.=+-|.|-..+=...|.+-|+-+|....+.+. +..|=|+-|++---++-+.
T Consensus       124 ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~  203 (342)
T KOG2160|consen  124 GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD  203 (342)
T ss_pred             cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH
Confidence            34444222334556666 799999999999999999999999999999999999888877 7888899999999999999


Q ss_pred             hhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcccCC
Q 022328          201 DFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGR  242 (299)
Q Consensus       201 dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~~~~  242 (299)
                      .|-..+|.+-..+++.+.+.+..++.|-..++- |+..+..+
T Consensus       204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~-~Ll~~~~s  244 (342)
T KOG2160|consen  204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS-LLLQEDKS  244 (342)
T ss_pred             HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH-HHHHhhhh
Confidence            999999999999999999999999999875554 44444444

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.19  E-value=2.1  Score=35.25  Aligned_cols=96  Identities=14%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             hhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhccHHHHHHHHhhc-ccccchhhhHhHHHHHHhh
Q 022328          160 AHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNGIEEVAELIRDK-QVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       160 a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~-N~~dFE~~~Gl~~Va~llK~~-q~d~~vRlKC~EFLl~yl~  237 (299)
                      .+-..|++.+..-|..+.+-+|.-.|..|=+++--+.. =...+-.-.-+++..++++++ +++.+||.||.|++.-+--
T Consensus        33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            56677888888888888888998888888888887755 445555556677888899887 9999999999999977654


Q ss_pred             cccC--CCCCCcccHHHHHH
Q 022328          238 HVNG--RQLSPMATIHEDIR  255 (299)
Q Consensus       238 ~~~~--~~~~~~a~~~ed~~  255 (299)
                      ....  .+.|.+..+++.+|
T Consensus       113 ~f~~~~~~~~~~~~~y~~lk  132 (133)
T cd03561         113 SFGGHSEDLPGIEDAYKLLK  132 (133)
T ss_pred             HhcCCCccchHHHHHHHHHh
Confidence            4333  22444444544443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF05536 Neurochondrin: Neurochondrin

Probab=89.14  E-value=7.5  Score=39.64  Aligned_cols=139  Identities=19%  Similarity=0.187  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-----hhhhhhhhccHHHH
Q 022328          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-----NQLDFEACNGIEEV  211 (299)
Q Consensus       137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~-----N~~dFE~~~Gl~~V  211 (299)
                      +=+..++.+|.+.+ -|+.-+...-++.++..+.++... ++..+-..+-.|+.+|-+...     +...|...  +.++
T Consensus       114 ~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~i--l~~L  189 (543)
T PF05536_consen  114 ETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSI--LPSL  189 (543)
T ss_pred             hHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHH--HHHH
Confidence            66788999999999 888888888889999999999988 555566667777777777763     23333333  3556


Q ss_pred             HHHHhhcccccchhhhHhHHHHHHhhccc--CCCCCCcccHHHHHHHHhchhhHHHHHHhh--hccCCCChHHhHHHHHH
Q 022328          212 AELIRDKQVDENLRLRCGEFLLLLIGHVN--GRQLSPMATIHEDIRRLLGEKSASLIWAAS--QFGSTLNPEERLMALHI  287 (299)
Q Consensus       212 a~llK~~q~d~~vRlKC~EFLl~yl~~~~--~~~~~~~a~~~ed~~~llGe~~asliwaa~--~fgstlD~e~r~~aL~~  287 (299)
                      ++.++..+  .+.|..-++||..++-+..  +...++            ++++-+-||...  -+.|.+.|++|-.+|+.
T Consensus       190 a~~fs~~~--~~~kfell~~L~~~L~~~~~~~~~~~~------------~~~W~~~l~~gl~~iL~sr~~~~~R~~al~L  255 (543)
T PF05536_consen  190 ARDFSSFH--GEDKFELLEFLSAFLPRSPILPLESPP------------SPKWLSDLRKGLRDILQSRLTPSQRDPALNL  255 (543)
T ss_pred             HHHHHhhc--cchHHHHHHHHHHhcCcCCccccccCC------------hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            66666443  4456666999999988883  223333            233333333333  45789999999999765


Q ss_pred             HHHHHHh
Q 022328          288 QARRVLE  294 (299)
Q Consensus       288 qA~~vLe  294 (299)
                      -| -+++
T Consensus       256 aa-~Ll~  261 (543)
T PF05536_consen  256 AA-SLLD  261 (543)
T ss_pred             HH-HHHH
Confidence            44 3443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 61/382 (15%), Positives = 108/382 (28%), Gaps = 126/382 (32%)

Query: 2   YLKKPLWSEGVEKQMESETETAAATAVGELANS---LKQQRVQR-EITLALRTGLRDARA 57
           +L  P+ +E  +  M +            L N      +  V R +  L LR  L + R 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 58  EFSFLRVRGL----RSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVL---FQHSFKED 110
               + + G+    ++ +       +        C S  V       +     ++    +
Sbjct: 150 A-KNVLIDGVLGSGKTWV-----ALDV-------CLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 111 SVDERVTSLDHIFTVDPMRVTSPSTDA-------EVALALRVLEGC-----CLLHRESAI 158
           +V E +  L +    DP   +     +        +   LR L        CLL     +
Sbjct: 197 TVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----V 249

Query: 159 LAH-KHKAI--------KILM--------NILS--TRGALEQGACLDALT--------SL 191
           L + ++           KIL+        + LS  T   +        LT          
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 192 MLDSSANQLDFEACNG----IEEVAELIRD--------KQVD-ENLRLRCGEFLLLLIGH 238
            LD     L  E        +  +AE IRD        K V+ + L       L      
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL------ 363

Query: 239 VNGRQLSPMATIHEDIRRL---LG---------EKSASLIWAASQFGSTLNPEERLMALH 286
                L P      + R++   L              SLIW           +  ++   
Sbjct: 364 ---NVLEP-----AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-----DVMVVVNK 410

Query: 287 IQARRVLE--------SL-DLY 299
           +    ++E        S+  +Y
Sbjct: 411 LHKYSLVEKQPKESTISIPSIY 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.47
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.12
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.08
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	95.83
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.65
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	95.44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	95.02
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.98
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	94.46
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.31
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	93.81
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.72
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	93.48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.43
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	92.59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	92.03
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	91.77
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	91.05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	91.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	90.78
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	90.32
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	87.91
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	85.48
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	85.02
3grl_A	651	General vesicular transport factor P115; vesicle t	83.2
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	82.99
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	82.93
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	82.81
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	80.82
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	80.61

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.47  E-value=0.011  Score=46.70  Aligned_cols=109  Identities=13%  Similarity=0.100  Sum_probs=90.6

Q ss_pred             ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328          135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  214 (299)
Q Consensus       135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l  214 (299)
                      ++.-...|++.|--.|--.+..+....+..+++.++++|....+..+..++-+|-.+...++.+...+.+.+++..+.++
T Consensus       141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l  220 (252)
T 4hxt_A          141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKL  220 (252)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            34556678888888777777777777788999999999998888899999999999998899999999999999999999


Q ss_pred             HhhcccccchhhhHhHHHHHHhhcccCCCCC
Q 022328          215 IRDKQVDENLRLRCGEFLLLLIGHVNGRQLS  245 (299)
Q Consensus       215 lK~~q~d~~vRlKC~EFLl~yl~~~~~~~~~  245 (299)
                      +++.  +.++|..+...|.-+..+..+...+
T Consensus       221 l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~  249 (252)
T 4hxt_A          221 LTST--DSEVQKEAQRALENIKSGGWLEHHH  249 (252)
T ss_dssp             GGCS--CHHHHHHHHHHHHHHHHTCBCCC--
T ss_pred             HCCC--cHHHHHHHHHHHHHHHcCCCccccc
Confidence            9864  6789999999888877766655433

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.12  E-value=0.026  Score=44.61  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      ......|++.|.-.+--++..+....+..+++.++++|....+-.+..++.+|-.+-.+++.+...+-+.+|+..+.+++
T Consensus        16 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll   95 (252)
T 4hxt_A           16 SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL   95 (252)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence            45566788888888888887888888889999999999998888899999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHhHHHHHHh
Q 022328          216 RDKQVDENLRLRCGEFLLLLI  236 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFLl~yl  236 (299)
                      ++  -++++|..|+.-|.-+.
T Consensus        96 ~~--~~~~v~~~a~~~L~~l~  114 (252)
T 4hxt_A           96 TS--TDSEVQKEAARALANIA  114 (252)
T ss_dssp             TC--SSHHHHHHHHHHHHHHT
T ss_pred             cC--CCHHHHHHHHHHHHHHH
Confidence            96  46889988888777766

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.09  E-value=0.019  Score=45.14  Aligned_cols=99  Identities=14%  Similarity=0.072  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (299)
Q Consensus       137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK  216 (299)
                      .-...|++.|--.|--.+..+....+..++..++++|....+-.+..+.-+|-.+..+++.+...+-+.+++..+.++++
T Consensus        69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  148 (210)
T 4db6_A           69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  148 (210)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc
Confidence            34556888888888778888888888899999999999888888999999999888888888888999999999999999


Q ss_pred             hcccccchhhhHhHHHHHHhh
Q 022328          217 DKQVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       217 ~~q~d~~vRlKC~EFLl~yl~  237 (299)
                      +.  +.++|..++..|.-+..
T Consensus       149 ~~--~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A          149 SP--NEQILQEALWALSNIAS  167 (210)
T ss_dssp             CS--CHHHHHHHHHHHHHHHT
T ss_pred             CC--CHHHHHHHHHHHHHHHc
Confidence            75  78899999988877754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.08  E-value=0.023  Score=44.62  Aligned_cols=98  Identities=17%  Similarity=0.161  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      ..-...|+.+|.-.|--.+..+.......+++.++++|....+-.|..++-+|-.+.-+++.+...+.+..+++.+.+++
T Consensus       110 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll  189 (210)
T 4db6_A          110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ  189 (210)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence            34455677788777777777776777888999999999988888899999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHhHHHHHH
Q 022328          216 RDKQVDENLRLRCGEFLLLL  235 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFLl~y  235 (299)
                      ++  -++++|-++.+.|--+
T Consensus       190 ~~--~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          190 SH--ENEKIQKEAQEALEKL  207 (210)
T ss_dssp             GC--SCHHHHHHHHHHHHHH
T ss_pred             hC--CCHHHHHHHHHHHHHH
Confidence            85  4778999999887654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=95.83  E-value=0.22  Score=40.01  Aligned_cols=99  Identities=14%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (299)
Q Consensus       137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK  216 (299)
                      .-...|++.|.-++--++..+....+..+++.++++|....+..+..++.+|-.+-.+++.....+-+.+|+..+.++++
T Consensus        69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  148 (252)
T 4db8_A           69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  148 (252)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh
Confidence            44567888888888778888888888899999999999987888899998887776665555488889999999999998


Q ss_pred             hcccccchhhhHhHHHHHHhh
Q 022328          217 DKQVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       217 ~~q~d~~vRlKC~EFLl~yl~  237 (299)
                      +.  +.++|..++.-|.-+..
T Consensus       149 ~~--~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A          149 SP--NEQILQEALWALSNIAS  167 (252)
T ss_dssp             CS--CHHHHHHHHHHHHHHTT
T ss_pred             CC--CHHHHHHHHHHHHHHHc
Confidence            75  77899888877766654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.65  E-value=0.066  Score=49.11  Aligned_cols=101  Identities=21%  Similarity=0.274  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (299)
Q Consensus       137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK  216 (299)
                      ..-..|...|.-.|.-.++.+....+..++..|+++|....+-.|....-+|--+-.++++|...+-+..|+...+++|+
T Consensus        17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~   96 (457)
T 1xm9_A           17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR   96 (457)
T ss_dssp             HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Confidence            44567788888878777788878889999999999999877788999999999999999999999999999999999998


Q ss_pred             hcccccchhhhHhHHHHHHhhc
Q 022328          217 DKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       217 ~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      +.+ +.+++-.++.-|.-+..+
T Consensus        97 ~~~-~~~~~~~a~~aL~nLa~~  117 (457)
T 1xm9_A           97 RTG-NAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             TCC-CHHHHHHHHHHHHHHHTS
T ss_pred             hCC-CHHHHHHHHHHHHHHhcC
Confidence            544 668888888877777766

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=95.44  E-value=0.14  Score=45.67  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhc-CcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 022328          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD  217 (299)
Q Consensus       139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-g~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~  217 (299)
                      -..|.++|--++=..+.++..+-+..|+..|+++|... .+-.+..++-||-++.-+.++++..|.+.+|+..++++|++
T Consensus        99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~  178 (296)
T 1xqr_A           99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ  178 (296)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence            34678888777777899999999999999999999864 45678899999999888899999999999999999999987


Q ss_pred             cccccchhhhHhHHHHHHhh
Q 022328          218 KQVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       218 ~q~d~~vRlKC~EFLl~yl~  237 (299)
                      .  |..+|.+.+--|..+..
T Consensus       179 ~--d~~v~~~A~~aLs~L~~  196 (296)
T 1xqr_A          179 Q--VQKLKVKSAFLLQNLLV  196 (296)
T ss_dssp             S--CHHHHHHHHHHHHHHHH
T ss_pred             C--CHHHHHHHHHHHHHHHh
Confidence            4  78888887755554433

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=95.02  E-value=0.51  Score=41.75  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcch-hhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 022328          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE-QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD  217 (299)
Q Consensus       139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~le-q~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~  217 (299)
                      ...+.+.|.-.+.-+++++....+..+++.++++|....... +.++..+ +.-|-.++.|...+-+.+++..+.+++++
T Consensus       160 ~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~g~~~~L~~ll~~  238 (529)
T 1jdh_A          160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV-LKVLSVCSSNKPAIVEAGGMQALGLHLTD  238 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH-HHHHTTSTTHHHHHHHTTHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHH-HHHHhcCcccHHHHHHCCCHHHHHHHHhC
Confidence            344555666556667888888888899999999998754332 2334433 44556789999999999999999999987


Q ss_pred             cccccchhhhHhHHHHHHhhc
Q 022328          218 KQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       218 ~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      .  +.+++..|+..|.-+..+
T Consensus       239 ~--~~~~~~~a~~~L~~l~~~  257 (529)
T 1jdh_A          239 P--SQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             S--CHHHHHHHHHHHHHHHTT
T ss_pred             C--ChHHHHHHHHHHHHHhcC
Confidence            6  788999998888776654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.98  E-value=0.089  Score=42.28  Aligned_cols=99  Identities=14%  Similarity=0.080  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      +.-...|+..|--.|--.........+..+++.++++|....+-.+..++.+|-.+.-+++.+...+-+.+++..+.+++
T Consensus       110 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  189 (252)
T 4db8_A          110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL  189 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence            34455667777666665555546677788999999999888788899999999888888889988999999999999999


Q ss_pred             hhcccccchhhhHhHHHHHHh
Q 022328          216 RDKQVDENLRLRCGEFLLLLI  236 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFLl~yl  236 (299)
                      ++.  ++++|..++..|.-+.
T Consensus       190 ~~~--~~~v~~~a~~~L~~l~  208 (252)
T 4db8_A          190 SSP--NEQILQEALWALSNIA  208 (252)
T ss_dssp             GCS--SHHHHHHHHHHHHHHT
T ss_pred             CCC--CHHHHHHHHHHHHHHh
Confidence            976  8899999998887665

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=94.46  E-value=0.22  Score=45.35  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 022328          138 EVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD  217 (299)
Q Consensus       138 EI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~  217 (299)
                      -...|++.|.-.+--.+.++.......++..|+++|....+-.+..++.+|-.+--|++.+...+-+.+++..+.+++++
T Consensus       147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  226 (530)
T 1wa5_B          147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS  226 (530)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc
Confidence            34457777776666667777777788899999999998888889999999999999999998888889999999999998


Q ss_pred             cccccchhhhHhHHHHHHhhcc
Q 022328          218 KQVDENLRLRCGEFLLLLIGHV  239 (299)
Q Consensus       218 ~q~d~~vRlKC~EFLl~yl~~~  239 (299)
                        .+.++|..++..|.-+..+.
T Consensus       227 --~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          227 --NKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             --CCHHHHHHHHHHHHHHHCCS
T ss_pred             --CCHHHHHHHHHHHHHHhCCC
Confidence              67889988888887776554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.31  E-value=0.96  Score=38.97  Aligned_cols=100  Identities=17%  Similarity=0.038  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 022328          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (299)
Q Consensus       139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~  218 (299)
                      -..|+++|...+--.++.+....+..++..++.+|....+-.+..++.+|-.+.-|++.+...+-+.+++..+.+++++ 
T Consensus        82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-  160 (450)
T 2jdq_A           82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-  160 (450)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-
Confidence            3456677766665555555555567899999999998777888999999999999998888888888999999999984 


Q ss_pred             ccccchhhhHhHHHHHHhhcc
Q 022328          219 QVDENLRLRCGEFLLLLIGHV  239 (299)
Q Consensus       219 q~d~~vRlKC~EFLl~yl~~~  239 (299)
                      ..+.++|..++..|.-+..+.
T Consensus       161 ~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          161 QNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHHhCCC
Confidence            356789999998888776544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=93.81  E-value=0.14  Score=47.03  Aligned_cols=109  Identities=9%  Similarity=0.064  Sum_probs=82.9

Q ss_pred             ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcc------hhhhHHHHHHHHHhCCChhhhh
Q 022328          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL------EQGACLDALTSLMLDSSANQLD  201 (299)
Q Consensus       128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~l------eq~AcLDtLl~lmvDSs~N~~d  201 (299)
                      +++-...++.-..-|...|.-++- +++.+....+ .++.-|+++|....+.      .+.+++++|-.++-.++.+.+.
T Consensus       337 v~LL~~~~~~v~~~A~~aL~nls~-~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~  414 (457)
T 1xm9_A          337 ARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ  414 (457)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHH
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHhc-CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            555555555444445555555554 6777777766 5999999999875442      5579999999999999999999


Q ss_pred             hhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcc
Q 022328          202 FEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV  239 (299)
Q Consensus       202 FE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~  239 (299)
                      ++++.|++++.++++.. .+++++-|....|.-|..|.
T Consensus       415 i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          415 YFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSST
T ss_pred             HHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcch
Confidence            99999999999999965 46788888888887766553

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.72  E-value=1.5  Score=39.52  Aligned_cols=108  Identities=8%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhc-CcchhhhHHHHHHHHHhCCChhhhhhhhhcc
Q 022328          129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACNG  207 (299)
Q Consensus       129 kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-g~leq~AcLDtLl~lmvDSs~N~~dFE~~~G  207 (299)
                      ++-..+++.-..-|+++|--+|--.+..+...-...++..++++|... .+..+..+.-+|-.+.-.++.+...+-+.++
T Consensus       293 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~  372 (528)
T 4b8j_A          293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI  372 (528)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred             HHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence            333444566677889999888877777777777889999999999987 7778888888877777777777777778899


Q ss_pred             HHHHHHHHhhcccccchhhhHhHHHHHHhhc
Q 022328          208 IEEVAELIRDKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       208 l~~Va~llK~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      +..+.+++++.  +.++|..++..|.-+..+
T Consensus       373 i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          373 IGPLVNLLQTA--EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence            99999999876  789999998888777655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=93.48  E-value=0.31  Score=44.07  Aligned_cols=102  Identities=13%  Similarity=0.005  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      +.--..|+..|.-.+--++..+....+..++..|+++|....+-.+..++-+|-.+--|++.+...+-+.+++..+..++
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL  211 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL  211 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence            44455678888877777788888888899999999999988788899999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHhHHHHHHhhc
Q 022328          216 RDKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      ++. .+.+++-.++..|.-+..+
T Consensus       212 ~~~-~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          212 NEH-TKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             CTT-CCHHHHHHHHHHHHHHHCS
T ss_pred             hcC-CCHHHHHHHHHHHHHHHcC
Confidence            643 4778888888877766554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=93.43  E-value=0.23  Score=46.82  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             ccCCCChHHHH-HHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328          130 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (299)
Q Consensus       130 it~psTdsEI~-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl  208 (299)
                      +++..++.+|. .+++.|--++ .++..+....+..+++.|+++|....+-.|.+++-+|--+. ..+++...|+++.|+
T Consensus       423 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l  500 (644)
T 2z6h_A          423 FVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGAT  500 (644)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCH
T ss_pred             hcccccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCh
Confidence            44555677775 5666666555 46677888888899999999998877778888887766654 558899999999999


Q ss_pred             HHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328          209 EEVAELIRDKQVDENLRLRCGEFLLLLI  236 (299)
Q Consensus       209 ~~Va~llK~~q~d~~vRlKC~EFLl~yl  236 (299)
                      +.+.+++++.  ++++|..|+.-|.-+.
T Consensus       501 ~~L~~ll~~~--~~~vr~~A~~aL~~l~  526 (644)
T 2z6h_A          501 APLTELLHSR--NEGVATYAAAVLFRMS  526 (644)
T ss_dssp             HHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence            9999999865  7789988888776553

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=92.59  E-value=0.5  Score=42.12  Aligned_cols=102  Identities=11%  Similarity=0.082  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328          135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  214 (299)
Q Consensus       135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l  214 (299)
                      .+.-..-|+..|--.|--+++.....-...++..|+++|....+-.|....=+|-.+.-.++++...|-+.+++..++++
T Consensus       138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L  217 (296)
T 1xqr_A          138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL  217 (296)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence            34555677888877777778877666677899999999998877788777777777777788889999999999999999


Q ss_pred             HhhcccccchhhhHhHHHHHHhhc
Q 022328          215 IRDKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       215 lK~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      |+..  +.++|.+++.-|.-++..
T Consensus       218 L~~~--d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          218 VRTE--HSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HTSC--CSTHHHHHHHHHHHHHTT
T ss_pred             HcCC--ChhHHHHHHHHHHHHHhC
Confidence            9876  788999999998766654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=92.03  E-value=0.5  Score=41.81  Aligned_cols=96  Identities=16%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      +.-...|++.|.-+|.-++..+....+..++..++++|....+-.+..+.++|-.+-.+++++...+-+.+|++.+.+++
T Consensus       115 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll  194 (529)
T 1jdh_A          115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM  194 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            34456788888888888788888888899999999999886666778888888888888999999999999999999999


Q ss_pred             hhcccccchhhhHhHHH
Q 022328          216 RDKQVDENLRLRCGEFL  232 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFL  232 (299)
                      ++. .++.++..|+..|
T Consensus       195 ~~~-~~~~~~~~a~~~L  210 (529)
T 1jdh_A          195 RTY-TYEKLLWTTSRVL  210 (529)
T ss_dssp             HHC-CCHHHHHHHHHHH
T ss_pred             HhC-ChHHHHHHHHHHH
Confidence            975 3444554444443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=91.77  E-value=0.46  Score=46.88  Aligned_cols=106  Identities=13%  Similarity=0.115  Sum_probs=83.1

Q ss_pred             ccCCCChHHHH-HHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328          130 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (299)
Q Consensus       130 it~psTdsEI~-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl  208 (299)
                      +++..++.+|. .+++.|.-+| .++.++....+..+++.|+++|....+-.|.++.-+|-.+.- .+++...|++..|+
T Consensus       559 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i  636 (780)
T 2z6g_A          559 FVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGAT  636 (780)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCH
T ss_pred             hhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCH
Confidence            44555666663 5667776666 467888888888999999999998888889998888776654 47889999999999


Q ss_pred             HHHHHHHhhcccccchhhhHhHHHHHHhhcc
Q 022328          209 EEVAELIRDKQVDENLRLRCGEFLLLLIGHV  239 (299)
Q Consensus       209 ~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~  239 (299)
                      +.+.+++++.  +++||-.|+.-|.-+..+.
T Consensus       637 ~~L~~Ll~~~--~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          637 APLTELLHSR--NEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             HHHHHGGGCS--CHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHcCC
Confidence            9999999864  6889998888776655433

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=91.05  E-value=0.68  Score=40.50  Aligned_cols=103  Identities=17%  Similarity=0.298  Sum_probs=81.7

Q ss_pred             ccCCCChHH-HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328          130 VTSPSTDAE-VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (299)
Q Consensus       130 it~psTdsE-I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl  208 (299)
                      +.++..+.+ ...|...|+-.|.-+++.+....+..+|..|+++|....+-.|..-.-+|.-+=.+++.|....-+..||
T Consensus        17 L~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI   96 (233)
T 3tt9_A           17 LEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGV   96 (233)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             hCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCH
Confidence            445544223 3567778888888889999999999999999999998878889888999999989999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhHhHHHH
Q 022328          209 EEVAELIRDKQVDENLRLRCGEFLL  233 (299)
Q Consensus       209 ~~Va~llK~~q~d~~vRlKC~EFLl  233 (299)
                      ..++++|+..+ +.+++-.++--|+
T Consensus        97 ~~Lv~lL~~~~-~~~~~e~a~~aL~  120 (233)
T 3tt9_A           97 PRLLQVLKQTR-DLETKKQITGLLW  120 (233)
T ss_dssp             HHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHccCC-CHHHHHHHHHHHH
Confidence            99999999743 4455544443333

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=91.00  E-value=0.58  Score=44.15  Aligned_cols=98  Identities=15%  Similarity=0.191  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      +.-...|+..|.-+|-.....+....+..+++.++++|....+-.+.+++++|-.+-..+++|...+-+..|+..+.+++
T Consensus       112 ~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL  191 (644)
T 2z6h_A          112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM  191 (644)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHH
Confidence            44567788888888887788888888889999999999987777788888888888888999999999999999999999


Q ss_pred             hhcccccchhhhHhHHHHH
Q 022328          216 RDKQVDENLRLRCGEFLLL  234 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFLl~  234 (299)
                      ++.. ++.++..|+.-|.-
T Consensus       192 ~~~~-~~~~~~~a~~~L~n  209 (644)
T 2z6h_A          192 RTYT-YEKLLWTTSRVLKV  209 (644)
T ss_dssp             TTCC-CHHHHHHHHHHHHH
T ss_pred             HcCC-hHHHHHHHHHHHHH
Confidence            8763 45565555555433

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=90.78  E-value=1.2  Score=38.44  Aligned_cols=102  Identities=13%  Similarity=0.017  Sum_probs=77.2

Q ss_pred             ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhC-CChhhhhhhhhccHHHHHH
Q 022328          135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLD-SSANQLDFEACNGIEEVAE  213 (299)
Q Consensus       135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvD-Ss~N~~dFE~~~Gl~~Va~  213 (299)
                      ...-..-|++.|...+--++..........++..++++|....+-.|.++.-+|-.+..+ ++++...+-+.+++..+.+
T Consensus       289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~  368 (450)
T 2jdq_A          289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD  368 (450)
T ss_dssp             SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence            344445677777666654555555555567899999999987777888888888888777 5566666767889999999


Q ss_pred             HHhhcccccchhhhHhHHHHHHhhc
Q 022328          214 LIRDKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       214 llK~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      ++++.  +.++|..|.+.|.-++..
T Consensus       369 ll~~~--~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          369 LLTVM--DSKIVQVALNGLENILRL  391 (450)
T ss_dssp             GGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred             HhcCC--CHHHHHHHHHHHHHHHHh
Confidence            99975  788999999998776653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=90.32  E-value=5.8  Score=35.99  Aligned_cols=102  Identities=9%  Similarity=-0.018  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328          135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  214 (299)
Q Consensus       135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l  214 (299)
                      .+.-..-|+++|--+|--++..+...-...++..++++|....+..+.+++-+|-.+.-.++.+...+-+.+++..+.++
T Consensus       312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  391 (530)
T 1wa5_B          312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL  391 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            34445667888877776666666666667899999999988777788888888877766677776777778999999999


Q ss_pred             HhhcccccchhhhHhHHHHHHhhc
Q 022328          215 IRDKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       215 lK~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      +++.  +.++|..++.-|--+..+
T Consensus       392 L~~~--~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          392 LEVA--EYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             HhcC--CHHHHHHHHHHHHHHHhc
Confidence            9864  678998888887766654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=87.91  E-value=1.2  Score=43.98  Aligned_cols=91  Identities=13%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhcc
Q 022328          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNG  207 (299)
Q Consensus       128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~G  207 (299)
                      +++-....+.-...|+..|--+|..+...+....+..++..++++|.....-.+..++++|-.+-.+++++...|-+..|
T Consensus       240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~  319 (780)
T 2z6g_A          240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  319 (780)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence            34444445666778999999999988899999988999999999998866666788888888777788999999999999


Q ss_pred             HHHHHHHHhhc
Q 022328          208 IEEVAELIRDK  218 (299)
Q Consensus       208 l~~Va~llK~~  218 (299)
                      ++.+++++|+.
T Consensus       320 i~~Lv~lL~~~  330 (780)
T 2z6g_A          320 PQALVNIMRTY  330 (780)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999975

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=85.48  E-value=4.1  Score=37.61  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=83.6

Q ss_pred             ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhc
Q 022328          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACN  206 (299)
Q Consensus       128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~-N~~dFE~~~  206 (299)
                      +++-+-+.+.-...|...|-.++--.+..+.....+.++..++++|.....-.|..+.=+|--+...++. +...+-+..
T Consensus       322 ~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g  401 (510)
T 3ul1_B          322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG  401 (510)
T ss_dssp             C-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence            3444444455556677778777777888888888899999999999998888888888888888776554 446678899


Q ss_pred             cHHHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328          207 GIEEVAELIRDKQVDENLRLRCGEFLLLLI  236 (299)
Q Consensus       207 Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl  236 (299)
                      ++....++|+..  |.+++..+.+.|.-++
T Consensus       402 ~i~~L~~LL~~~--d~~i~~~~L~aL~nil  429 (510)
T 3ul1_B          402 IIEPLMNLLSAK--DTKIIQVILDAISNIF  429 (510)
T ss_dssp             CHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            999999999864  7889999999886554

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=85.02  E-value=2.1  Score=42.44  Aligned_cols=117  Identities=20%  Similarity=0.296  Sum_probs=77.9

Q ss_pred             cccccccCCccccccccccCCC--c------------cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHH
Q 022328          106 SFKEDSVDERVTSLDHIFTVDP--M------------RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMN  171 (299)
Q Consensus       106 sl~~~~~~~~V~~l~~i~g~ep--~------------kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~Avevlln  171 (299)
                      -|.+++ -+.+.+++.+.-..|  .            .+.++ .+.....|...|.-.|.-+.+.|....+..+|..|++
T Consensus        20 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~   97 (584)
T 3l6x_A           20 PLAQHE-RGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVG   97 (584)
T ss_dssp             ---------------------CCCCCCCCCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cccccc-cchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHH
Confidence            344555 556777777744211  1            12333 3334456778888889889999999999999999999


Q ss_pred             HHhhcCcchhhhHHHHHHHHHh-CCChhhhhhhhhccHHHHHHHHhhcccccchh
Q 022328          172 ILSTRGALEQGACLDALTSLML-DSSANQLDFEACNGIEEVAELIRDKQVDENLR  225 (299)
Q Consensus       172 iL~~rg~leq~AcLDtLl~lmv-DSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vR  225 (299)
                      +|....+-.|....-+|--|-. |+++|....-++.||..++++|+..+ +.+++
T Consensus        98 LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~  151 (584)
T 3l6x_A           98 LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR-DMDLT  151 (584)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC-SHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC-CHHHH
Confidence            9998888889999999999988 58999999999999999999999743 33444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=83.20  E-value=7.1  Score=39.86  Aligned_cols=257  Identities=14%  Similarity=0.200  Sum_probs=148.5

Q ss_pred             hhhhhHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhcc--------ccchhhhhccC
Q 022328           23 AAATAVGELANSLKQQRV---QREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAES--------DSTIHFFCQSQ   91 (299)
Q Consensus        23 ~~~~~v~elv~sl~~qR~---yRevtlaLR~gLRDa~AeFSFlR~rglr~ll~fl~s~a~s--------d~~i~LF~~sQ   91 (299)
                      .++..+..|++-++---+   .|+--++||.=-|+.++++.   .+||+.|+..|+.-.+-        |.-..+|+...
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            334445555544443322   46777888888888888775   78899998888764321        22236777543


Q ss_pred             Cc----------------------CCccchhhhhcccccccccCC---cccccccc------------c----cCCC-cc
Q 022328           92 SV----------------------PELQVVPVLFQHSFKEDSVDE---RVTSLDHI------------F----TVDP-MR  129 (299)
Q Consensus        92 s~----------------------~~lQvvPvLF~hsl~~~~~~~---~V~~l~~i------------~----g~ep-~k  129 (299)
                      .=                      .+-.-||.|++. |+.....-   .|-.|..+            +    |+.. |.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~  173 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD  173 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence            21                      112236666653 21111000   11111111            1    1111 22


Q ss_pred             ccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCc----chhhhHHHHHHHHHhCCChhhhhhhhh
Q 022328          130 VTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGA----LEQGACLDALTSLMLDSSANQLDFEAC  205 (299)
Q Consensus       130 it~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~----leq~AcLDtLl~lmvDSs~N~~dFE~~  205 (299)
                      +-+-+.+-=-..|+-+|.-.+=-++....+..--.|.+.+++|+...|.    ..+.-||-.+-.++=..++||.-|-|.
T Consensus       174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt  253 (651)
T 3grl_A          174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG  253 (651)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence            2222222222347777777777888888888888999999999999776    678899999999999999999999999


Q ss_pred             ccHHHHHHHHhhcccccch------hhhHhHHHHHHhhcccCCCCCCccc--HHHHHHHHhchhhHHHHHHhhhccCCCC
Q 022328          206 NGIEEVAELIRDKQVDENL------RLRCGEFLLLLIGHVNGRQLSPMAT--IHEDIRRLLGEKSASLIWAASQFGSTLN  277 (299)
Q Consensus       206 ~Gl~~Va~llK~~q~d~~v------RlKC~EFLl~yl~~~~~~~~~~~a~--~~ed~~~llGe~~asliwaa~~fgstlD  277 (299)
                      +++.+++.+++.   +++.      |+++.-..+..+.-.-..++++-.+  -|..+.+   ......+... -|++...
T Consensus       254 ~~i~~L~~LL~~---~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~---~g~l~~Ll~l-l~~~~~p  326 (651)
T 3grl_A          254 SYIQRMKPWFEV---GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ---CGLLQQLCTI-LMATGVP  326 (651)
T ss_dssp             TCGGGGGGGGCC---CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH---TTHHHHHHHH-HTCSSCC
T ss_pred             CCHHHHHHHhCC---CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH---CCCHHHHHHH-HccCCCC
Confidence            999999999974   3344      6777544444443333333321111  2222222   1111122221 3446666


Q ss_pred             hHHhHHHHHHHHH
Q 022328          278 PEERLMALHIQAR  290 (299)
Q Consensus       278 ~e~r~~aL~~qA~  290 (299)
                      ..-|..|+.--|.
T Consensus       327 ~~i~~~Al~tla~  339 (651)
T 3grl_A          327 ADILTETINTVSE  339 (651)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6677777765554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=82.99  E-value=4.3  Score=37.45  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=81.9

Q ss_pred             cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhcc
Q 022328          129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNG  207 (299)
Q Consensus       129 kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~-N~~dFE~~~G  207 (299)
                      ++-+.+.+.-...|...|--+|--.+......-.+.++..++++|.....-.|..+.=+|-.+...++. +...+-+..+
T Consensus       342 ~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~  421 (529)
T 3tpo_A          342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI  421 (529)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence            333333444445677777777777888888888889999999999998888888888888887776544 4566788999


Q ss_pred             HHHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328          208 IEEVAELIRDKQVDENLRLRCGEFLLLLI  236 (299)
Q Consensus       208 l~~Va~llK~~q~d~~vRlKC~EFLl~yl  236 (299)
                      |....++|+..  |.+++..|.+.|.-++
T Consensus       422 i~~L~~LL~~~--d~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          422 IEPLMNLLSAK--DTKIIQVILDAISNIF  448 (529)
T ss_dssp             HHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            99999999754  7889988888876554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=82.93  E-value=2.7  Score=38.80  Aligned_cols=81  Identities=15%  Similarity=0.030  Sum_probs=70.4

Q ss_pred             HHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 022328          140 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  219 (299)
Q Consensus       140 ~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q  219 (299)
                      ..|.++|--++--.+..+...-...|+..|+.+|....+-.|..|+-+|-.|-.|++.+...+-++.|+..+..+++...
T Consensus       138 ~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~  217 (529)
T 3tpo_A          138 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD  217 (529)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccc
Confidence            34777777777777777778888899999999998888889999999999999999999999999999999999998654


Q ss_pred             c
Q 022328          220 V  220 (299)
Q Consensus       220 ~  220 (299)
                      .
T Consensus       218 ~  218 (529)
T 3tpo_A          218 L  218 (529)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=82.81  E-value=2.8  Score=38.18  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=80.5

Q ss_pred             CChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhc-----------CcchhhhHHHHHHHHHhCCChhhhhh
Q 022328          134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-----------GALEQGACLDALTSLMLDSSANQLDF  202 (299)
Q Consensus       134 sTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-----------g~leq~AcLDtLl~lmvDSs~N~~dF  202 (299)
                      +++-++..|++.|.-.+- +++++.+..+..+++.|+++|...           .+-.|....-+|--+-.+++.|...+
T Consensus        44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            457888899999998886 489999999999999999999631           13457778888888888888888888


Q ss_pred             hhhcc-HHHHHHHHhhcccccchhhhHhHHHHHHhh
Q 022328          203 EACNG-IEEVAELIRDKQVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       203 E~~~G-l~~Va~llK~~q~d~~vRlKC~EFLl~yl~  237 (299)
                      ....| |...+++|+.  -+++++-..+-.|.-+..
T Consensus       123 ~~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~  156 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSW  156 (354)
T ss_dssp             HHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHHCC--CCHHHHHHHHHHHHHHhc
Confidence            88889 9999999984  456777776666655544

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=80.82  E-value=4.6  Score=37.30  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=67.0

Q ss_pred             HHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 022328          141 LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  219 (299)
Q Consensus       141 LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q  219 (299)
                      .|.++|--.+--.++.+...-+..||..|+.+|....+-.|..|+-+|--+-.|++.+...+-+..|+..+..+++...
T Consensus       120 ~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~  198 (510)
T 3ul1_B          120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD  198 (510)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc
Confidence            3556665555556667777778899999999999888889999999999999999999999999999999999998654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=80.61  E-value=3.5  Score=37.49  Aligned_cols=199  Identities=13%  Similarity=0.148  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhcchhhH-HHhc-hHHHHHHHhhhhc---cccchhhhh--------ccCCcCCccchhhhhc
Q 022328           38 QRVQREITLALRTGLRDARAEFSFL-RVRG-LRSLLKILRSVAE---SDSTIHFFC--------QSQSVPELQVVPVLFQ  104 (299)
Q Consensus        38 qR~yRevtlaLR~gLRDa~AeFSFl-R~rg-lr~ll~fl~s~a~---sd~~i~LF~--------~sQs~~~lQvvPvLF~  104 (299)
                      ..+.++.+++|+.=-+.-...-..+ ...| +..|++.|+|--.   .++.-.|..        ..+.+.+...||.|.+
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4577888888876443322122223 4678 8888888875211   011111111        1133455567888876


Q ss_pred             ccccccc--c-CCcccccccc--------------ccCCC--ccccCCCChH---H-HHHHHHHHhhccc---cCcchHH
Q 022328          105 HSFKEDS--V-DERVTSLDHI--------------FTVDP--MRVTSPSTDA---E-VALALRVLEGCCL---LHRESAI  158 (299)
Q Consensus       105 hsl~~~~--~-~~~V~~l~~i--------------~g~ep--~kit~psTds---E-I~LALrVLeGccL---Lh~~s~~  158 (299)
                      --++...  + ...+..|-.+              -|.=|  +++-...++.   + +..|..+|.-++-   -++..+.
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            5332211  0 0001111111              11112  2222222221   2 3445555555554   4778888


Q ss_pred             HhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhc
Q 022328          159 LAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       159 ~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~  238 (299)
                      ...++.++..|+++|.....-.|..+.-+|--+-..++.|...+-+..|+....++++..  ++++|..++.=|.-+..+
T Consensus       258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence            888999999999999987777888888888777668899999999999999999999864  667887777666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.38
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.72
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	92.31
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	91.65
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	88.7
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	87.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	87.57

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.002  Score=50.48  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 022328          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (299)
Q Consensus       139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~  218 (299)
                      -..|.+.|.-.|.-+++.+....+..+|..|+++|....+-.|.+++.+|-.+..++++|+..+-+.+|+..+..+++..
T Consensus        19 ~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhcc
Confidence            35678899999988888899999999999999999888888999999999999999999999999999999999999875


Q ss_pred             ccccchhhhHhHHHHHHhhc
Q 022328          219 QVDENLRLRCGEFLLLLIGH  238 (299)
Q Consensus       219 q~d~~vRlKC~EFLl~yl~~  238 (299)
                      + +.++|..+.+.|.-+..+
T Consensus        99 ~-~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          99 G-NAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             C-CHHHHHHHHHHHHHHHTS
T ss_pred             C-cHHHHHHHHHHHHHHHhh
Confidence            4 667888888877766543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.011  Score=47.40  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=82.3

Q ss_pred             HHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcC-cchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328          138 EVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRG-ALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (299)
Q Consensus       138 EI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg-~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK  216 (299)
                      --..|+.+|-=+|-..+.++....++.++..++++|.... +-.+..++.+|-.+.-++++|+..|-+.+|+..+.++++
T Consensus        75 vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~  154 (264)
T d1xqra1          75 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ  154 (264)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh
Confidence            3567888888888888999999999999999999997654 457899999999999999999999999999999999998


Q ss_pred             hcccccchhhhHhHHHHHH
Q 022328          217 DKQVDENLRLRCGEFLLLL  235 (299)
Q Consensus       217 ~~q~d~~vRlKC~EFLl~y  235 (299)
                      ..  +++++.+++--|.-+
T Consensus       155 ~~--~~~~~~~a~~~L~~l  171 (264)
T d1xqra1         155 QQ--VQKLKVKSAFLLQNL  171 (264)
T ss_dssp             SS--CHHHHHHHHHHHHHH
T ss_pred             cC--chHHHHHHHHHHHHH
Confidence            64  778998887555433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.013  Score=49.96  Aligned_cols=100  Identities=16%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328          135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  214 (299)
Q Consensus       135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l  214 (299)
                      .+.-...|.+.|.-.|.-++.++....+..+++.++++|....+-.|..+..+|-.+..+++.+...+.+..|+....++
T Consensus       114 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  193 (529)
T d1jdha_         114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI  193 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHH
Confidence            34566778899999999999999999999999999999988888889999999988888889999999999999999999


Q ss_pred             HhhcccccchhhhHhHHHHHH
Q 022328          215 IRDKQVDENLRLRCGEFLLLL  235 (299)
Q Consensus       215 lK~~q~d~~vRlKC~EFLl~y  235 (299)
                      ++... ++.++-.|.+.+-.+
T Consensus       194 l~~~~-~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         194 MRTYT-YEKLLWTTSRVLKVL  213 (529)
T ss_dssp             HHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHhhh-hHHHHHHHHHHHhhh
Confidence            98754 567887777766543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.023  Score=45.47  Aligned_cols=95  Identities=11%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 022328          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (299)
Q Consensus       139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~  218 (299)
                      ..-|+..|...|--+++.+....+..++++++++|.....-.|..++-+|-.++..++.+...|.+.+|++.+..++++ 
T Consensus       119 ~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~-  197 (264)
T d1xqra1         119 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT-  197 (264)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS-
T ss_pred             HHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcC-
Confidence            3557777777788888888888899999999999998888888888888888888999999999999999999999976 


Q ss_pred             ccccchhhhHhHHHHHH
Q 022328          219 QVDENLRLRCGEFLLLL  235 (299)
Q Consensus       219 q~d~~vRlKC~EFLl~y  235 (299)
                       -+.++|.+|..-|.-+
T Consensus       198 -~~~~~~~~a~~aL~~L  213 (264)
T d1xqra1         198 -EHSPFHEHVLGALCSL  213 (264)
T ss_dssp             -CCSTHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHH
Confidence             4788999988666543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.021  Score=48.66  Aligned_cols=96  Identities=16%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 022328          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (299)
Q Consensus       139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~  218 (299)
                      -..|...|.-+| -|.+++....+..++..++.+|....+-.|..+.-+|-.+..|++.+++.|.+.+|++.+.+++++.
T Consensus        77 ~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~  155 (529)
T d1jdha_          77 ARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT  155 (529)
T ss_dssp             HHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc
Confidence            334666776677 4888888888899999999999888888999999999999999999999999999999999999764


Q ss_pred             ccccchhhhHhHHHHHHhh
Q 022328          219 QVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       219 q~d~~vRlKC~EFLl~yl~  237 (299)
                        +.+++..++.-|..+..
T Consensus       156 --~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_         156 --NVKFLAITTDCLQILAY  172 (529)
T ss_dssp             --CHHHHHHHHHHHHHHHT
T ss_pred             --ChHHHHHHHHHHHHHhh
Confidence              56788888887766543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.31  E-value=0.57  Score=37.63  Aligned_cols=85  Identities=15%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             HHH-HHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          137 AEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       137 sEI-~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      .+| ..|++.|.-+|--.+..+...-...++..++.+|....+-.+..++-+|--+..|++.+...+-+.+|++....++
T Consensus        71 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l  150 (434)
T d1q1sc_          71 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL  150 (434)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHH
Confidence            344 3577778777766677777788889999999999888888899999999999999999999999999999999999


Q ss_pred             hhcccc
Q 022328          216 RDKQVD  221 (299)
Q Consensus       216 K~~q~d  221 (299)
                      .....+
T Consensus       151 ~~~~~~  156 (434)
T d1q1sc_         151 AVPDLS  156 (434)
T ss_dssp             CSSCGG
T ss_pred             Hhcccc
Confidence            865544

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.65  E-value=0.39  Score=38.61  Aligned_cols=106  Identities=14%  Similarity=0.121  Sum_probs=83.7

Q ss_pred             cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhh-hhhhhcc
Q 022328          129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQL-DFEACNG  207 (299)
Q Consensus       129 kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~-dFE~~~G  207 (299)
                      ++-+-+.+.-...|+..|-.+|-.++.+.....++.+++.++++|....+-.+..+.=++..+..+++..+. .+-+.++
T Consensus       279 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~  358 (434)
T d1q1sc_         279 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI  358 (434)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Confidence            344434444557888889999988899999999999999999999998888999999999888887765544 4557788


Q ss_pred             HHHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328          208 IEEVAELIRDKQVDENLRLRCGEFLLLLI  236 (299)
Q Consensus       208 l~~Va~llK~~q~d~~vRlKC~EFLl~yl  236 (299)
                      ++.+.++++..  |.+++..+.+-|+-++
T Consensus       359 i~~L~~ll~~~--d~~~~~~~l~~l~~ll  385 (434)
T d1q1sc_         359 IEPLMNLLSAK--DTKIIQVILDAISNIF  385 (434)
T ss_dssp             HHHHHHHTTSS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            99999999754  7788888777766554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.70  E-value=1.3  Score=36.96  Aligned_cols=99  Identities=16%  Similarity=0.103  Sum_probs=80.6

Q ss_pred             HHH-HHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328          137 AEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (299)
Q Consensus       137 sEI-~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll  215 (299)
                      .+| ..|+++|--+|...+..+.......++..++.+|.....-.+..|+-+|--+.-|++.+...+-+++|+..+..++
T Consensus       134 ~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll  213 (503)
T d1wa5b_         134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF  213 (503)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc
Confidence            344 4588888888877777777788888999999999988888889999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHhHHHHHHhh
Q 022328          216 RDKQVDENLRLRCGEFLLLLIG  237 (299)
Q Consensus       216 K~~q~d~~vRlKC~EFLl~yl~  237 (299)
                      .+..  .+++..++-.|.-+..
T Consensus       214 ~~~~--~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         214 NSNK--PSLIRTATWTLSNLCR  233 (503)
T ss_dssp             GSCC--HHHHHHHHHHHHHHHC
T ss_pred             ccCC--HHHHHHHHHHHHHHhc
Confidence            7653  4566666655555543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.73  Score=35.46  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=67.3

Q ss_pred             ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCc------chhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328          135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGA------LEQGACLDALTSLMLDSSANQLDFEACNGI  208 (299)
Q Consensus       135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~------leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl  208 (299)
                      .+.-...+++.|-..+ .++..+....+ .+++-++++|.....      -.+.+++-+|--++.+++.|.+.+.+..|+
T Consensus       344 ~~~v~~~a~~~l~~La-~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i  421 (457)
T d1xm9a1         344 NSDVVRSGASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML  421 (457)
T ss_dssp             CHHHHHHHHHHHHHHH-TSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHH
T ss_pred             cHHHHHHHHHHHHHHh-hChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence            3444455666666554 45555555554 578888888865332      255778888888999999999999999999


Q ss_pred             HHHHHHHhhcccccchhhhHhHHHHH
Q 022328          209 EEVAELIRDKQVDENLRLRCGEFLLL  234 (299)
Q Consensus       209 ~~Va~llK~~q~d~~vRlKC~EFLl~  234 (299)
                      +.+..+++..+-+ .++...++-|.-
T Consensus       422 ~~L~~l~~~~~~~-~~~~aA~~~L~~  446 (457)
T d1xm9a1         422 NNIINLCRSSASP-KAAEAARLLLSD  446 (457)
T ss_dssp             HHHHHHHHCTTCH-HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCH-HHHHHHHHHHHH
Confidence            9999999987655 344444444443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.57  E-value=5.1  Score=33.26  Aligned_cols=143  Identities=10%  Similarity=0.000  Sum_probs=98.9

Q ss_pred             cCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHH
Q 022328          131 TSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEE  210 (299)
Q Consensus       131 t~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~  210 (299)
                      -....+.-...|++.|...+..+..-+..+-.+.+++.+..+|....+..+..++-++--+..-++.+...+-+.+++..
T Consensus       297 l~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~  376 (503)
T d1wa5b_         297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP  376 (503)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             ccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccch
Confidence            33334444567888888887766666777778889999999998877778888888887777666777778888999999


Q ss_pred             HHHHHhhcccccchhhhHhHHHHHHhhcccCCCCCCcccHHHHHHHHhchhhHHHHHHhhhccCCCChHHhHHHHH
Q 022328          211 VAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALH  286 (299)
Q Consensus       211 Va~llK~~q~d~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~~llGe~~asliwaa~~fgstlD~e~r~~aL~  286 (299)
                      +.+++...  +.++|-.|+.+|--+..+.....        +.+..+....+-..+....+   .-|++-...+|.
T Consensus       377 li~~l~~~--~~~v~~~a~~~l~nl~~~~~~~~--------~~~~~l~~~~~l~~l~~~L~---~~d~~~~~~~L~  439 (503)
T d1wa5b_         377 LVKLLEVA--EYKTKKEACWAISNASSGGLQRP--------DIIRYLVSQGCIKPLCDLLE---IADNRIIEVTLD  439 (503)
T ss_dssp             HHHHHHHS--CHHHHHHHHHHHHHHHHHTTTCT--------HHHHHHHHTTCHHHHHHHTT---TCCHHHHHHHHH
T ss_pred             hHHhcccC--ChhHHHHHHHHHHHHHhcccccH--------HHHHHHHHCCcHHHHHHHhc---CCCHHHHHHHHH
Confidence            99999765  45788889888887776554432        34444554444444444332   225555444443