Citrus Sinensis ID: 022372
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | 2.2.26 [Sep-21-2011] | |||||||
| Q42539 | 230 | Protein-L-isoaspartate O- | yes | no | 0.755 | 0.978 | 0.773 | 1e-103 | |
| Q43209 | 230 | Protein-L-isoaspartate O- | N/A | no | 0.751 | 0.973 | 0.714 | 1e-95 | |
| P80895 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.748 | 0.982 | 0.510 | 2e-56 | |
| P23506 | 227 | Protein-L-isoaspartate(D- | no | no | 0.748 | 0.982 | 0.506 | 6e-56 | |
| Q5F3N1 | 228 | Protein-L-isoaspartate(D- | no | no | 0.734 | 0.960 | 0.515 | 6e-56 | |
| P15246 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.748 | 0.982 | 0.506 | 6e-56 | |
| P22062 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.748 | 0.982 | 0.506 | 7e-56 | |
| Q4R5H0 | 227 | Protein-L-isoaspartate(D- | N/A | no | 0.748 | 0.982 | 0.506 | 2e-55 | |
| P22061 | 227 | Protein-L-isoaspartate(D- | no | no | 0.748 | 0.982 | 0.502 | 3e-55 | |
| Q92047 | 228 | Protein-L-isoaspartate(D- | yes | no | 0.734 | 0.960 | 0.506 | 3e-55 |
| >sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/225 (77%), Positives = 202/225 (89%)
Query: 73 WSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATI 132
WS S +NKNKAMVE+LQ++G++TS +V++ ME +DR FV D + YVDSPM+IGYN TI
Sbjct: 5 WSPSSINKNKAMVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSSAYVDSPMSIGYNVTI 64
Query: 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 192
SAPHMHA CLQLLE++LKPGM LD+GSGTGYLTACFA+MVG +GRA+GVEHIPELV SS
Sbjct: 65 SAPHMHAMCLQLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASS 124
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGR 252
++NIE SAA+P LKEGSL+VHVGDGR+GW EFAPYDAIHVGAAAPEIP+ALIDQLKPGGR
Sbjct: 125 VKNIEASAASPFLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGR 184
Query: 253 MVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
+VIPVGNIFQDL+VVDKN DGS+SI ETSVRYVPLTSR+AQLRG
Sbjct: 185 LVIPVGNIFQDLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRG 229
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Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7 |
| >sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 160/224 (71%), Positives = 195/224 (87%)
Query: 73 WSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATI 132
W+ + KN A+VE+L+ YGV+ + KV+EVMETIDRA FVP+G PY DSPM IGYNATI
Sbjct: 5 WAEGSLEKNNALVEYLKQYGVVRTDKVAEVMETIDRALFVPEGFTPYTDSPMPIGYNATI 64
Query: 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 192
SAPHMHATCL+LL++ L+PGMHALD+GSG+GYLTACFA+MVGP+GRAVG+EHIPELVV+S
Sbjct: 65 SAPHMHATCLELLKDYLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVVAS 124
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGR 252
+N+E+SAAA L+K+GSLS HV DGR GWP+ APYDAIHVGAAAPEIP+ L++QLKPGGR
Sbjct: 125 TENVERSAAAALMKDGSLSFHVSDGRLGWPDAAPYDAIHVGAAAPEIPRPLLEQLKPGGR 184
Query: 253 MVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 296
MVIPVG QDL+V+DK+ DGS S+ ++ SVRYVPLTSR AQL+
Sbjct: 185 MVIPVGTYSQDLQVIDKSADGSTSVRNDASVRYVPLTSRSAQLQ 228
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/229 (51%), Positives = 153/229 (66%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVRKDDPM-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 154/229 (67%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--SNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SITNVKKDDPM-LLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/225 (51%), Positives = 153/225 (68%), Gaps = 6/225 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I S KV EVM DR + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKSDKVFEVMLATDRCHYAK--YNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACF+ MVGP+G+ VG++HI ELV
Sbjct: 59 ISAPHMHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVKKDDPT-LLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294
R+++PVG Q L+ DK +DGS+ + V YVPLT ++ Q
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQ 222
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Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 152/229 (66%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N+ K LL G + + VGDGR G+ APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVRKDDPM-LLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 154/229 (67%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--SNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SITNVKKDDPM-LLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 152/229 (66%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAE--CNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 152/229 (66%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
S+ N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/225 (50%), Positives = 152/225 (67%), Gaps = 6/225 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + + +V +L+ G+I S +V EVM DR+ F PY+DSP +IGY AT
Sbjct: 2 AWKSGGAS-HAELVNNLRKNGIIKSDRVYEVMLATDRSHF--SRCNPYMDSPQSIGYQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL ++L G ALD+GSG+G L+ CF+ MVGP G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVED 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K + L+ G + + VGDGR G+ E APYDAIHVGAAAP +PQAL+DQLKPGG
Sbjct: 119 SIANVKKDDPS-LITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294
R+++PVG Q L+ DK +DGS + V YVPLT +D Q
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLEDGSTKMKPLMGVIYVPLTDKDKQ 222
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| 224135985 | 230 | predicted protein [Populus trichocarpa] | 0.768 | 0.995 | 0.899 | 1e-119 | |
| 255540441 | 309 | protein-l-isoaspartate O-methyltransfera | 0.765 | 0.737 | 0.890 | 1e-118 | |
| 224121858 | 314 | predicted protein [Populus trichocarpa] | 0.768 | 0.729 | 0.882 | 1e-117 | |
| 225456838 | 230 | PREDICTED: protein-L-isoaspartate O-meth | 0.768 | 0.995 | 0.868 | 1e-114 | |
| 356508746 | 307 | PREDICTED: protein-L-isoaspartate O-meth | 0.768 | 0.745 | 0.842 | 1e-111 | |
| 255635264 | 230 | unknown [Glycine max] | 0.768 | 0.995 | 0.842 | 1e-110 | |
| 388504744 | 229 | unknown [Lotus japonicus] | 0.765 | 0.995 | 0.833 | 1e-110 | |
| 388495586 | 229 | unknown [Lotus japonicus] gi|388502466|g | 0.765 | 0.995 | 0.837 | 1e-109 | |
| 449501340 | 311 | PREDICTED: protein-L-isoaspartate O-meth | 0.761 | 0.729 | 0.819 | 1e-106 | |
| 388515459 | 231 | unknown [Medicago truncatula] | 0.765 | 0.987 | 0.807 | 1e-105 |
| >gi|224135985|ref|XP_002322210.1| predicted protein [Populus trichocarpa] gi|222869206|gb|EEF06337.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/229 (89%), Positives = 218/229 (95%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
ER SGS +NKNKAMVEHLQHYGVI+SKKVSEVMETIDRA FVPDGTP YVDSPMAIGYN
Sbjct: 2 ERFCSGSSINKNKAMVEHLQHYGVISSKKVSEVMETIDRALFVPDGTPAYVDSPMAIGYN 61
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLEENLKPGMHALD+GSGTGYLTAC ALMVGPQGRAVGVEHIPEL
Sbjct: 62 ATISAPHMHATCLQLLEENLKPGMHALDVGSGTGYLTACLALMVGPQGRAVGVEHIPELA 121
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SS++NIEKSAAAPLLKEGSLS+HVGDGR+GWPEFAPYDAIHVGAAAPEIPQ L+DQLKP
Sbjct: 122 NSSLKNIEKSAAAPLLKEGSLSIHVGDGRQGWPEFAPYDAIHVGAAAPEIPQPLLDQLKP 181
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
GGRMVIPVGNIFQDLKVVDK +DGS+S+ SETSVRYVPLTSRDAQLRG+
Sbjct: 182 GGRMVIPVGNIFQDLKVVDKKEDGSISVRSETSVRYVPLTSRDAQLRGY 230
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540441|ref|XP_002511285.1| protein-l-isoaspartate O-methyltransferase, putative [Ricinus communis] gi|223550400|gb|EEF51887.1| protein-l-isoaspartate O-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/228 (89%), Positives = 218/228 (95%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
ER ++GSG+NKNKAMVEHLQHYGVI+S+KV EVMETIDRA FVPDGT YVDSPM IGYN
Sbjct: 82 ERFFAGSGINKNKAMVEHLQHYGVISSRKVVEVMETIDRALFVPDGTQAYVDSPMPIGYN 141
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLEE+LKPGMHALD+GSGTGYLTACFA+MVGPQGRAVGVEHIPELV
Sbjct: 142 ATISAPHMHATCLQLLEEHLKPGMHALDVGSGTGYLTACFAIMVGPQGRAVGVEHIPELV 201
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SS++NI KSAAAPLLKEG LSVH+GDGR+GWPEFAPYDAIHVGAAAPEIPQALIDQLKP
Sbjct: 202 TSSVKNILKSAAAPLLKEGFLSVHIGDGRQGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 261
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
GGRMVIPVGNIFQDLKV+DKNQDGS+S+ SETSVRYVPLTSRDAQLRG
Sbjct: 262 GGRMVIPVGNIFQDLKVIDKNQDGSISVRSETSVRYVPLTSRDAQLRG 309
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121858|ref|XP_002318690.1| predicted protein [Populus trichocarpa] gi|222859363|gb|EEE96910.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/229 (88%), Positives = 217/229 (94%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
ER WSGS +NKNKA+VE LQ+YG I+SKKVSEVMETIDRA FVPDGTP YVDSPMAIGYN
Sbjct: 86 ERFWSGSSINKNKALVEQLQNYGTISSKKVSEVMETIDRALFVPDGTPAYVDSPMAIGYN 145
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLEENLK GMH LD+GSGTGYLTACFALMVGPQGRAVGVEHIPEL
Sbjct: 146 ATISAPHMHATCLQLLEENLKSGMHVLDVGSGTGYLTACFALMVGPQGRAVGVEHIPELA 205
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SSI+NI+KSAAAPLLKEGSLS+HVGDGR+GWPEFAPYDAIHVGAAAPEIPQ L+DQLKP
Sbjct: 206 GSSIKNIKKSAAAPLLKEGSLSIHVGDGRQGWPEFAPYDAIHVGAAAPEIPQPLLDQLKP 265
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
GGRMVIPVGNIFQDLKV+DKN+DGS+S+ SETSVRYVPLTSRDAQLRG+
Sbjct: 266 GGRMVIPVGNIFQDLKVIDKNEDGSISVRSETSVRYVPLTSRDAQLRGY 314
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456838|ref|XP_002278792.1| PREDICTED: protein-L-isoaspartate O-methyltransferase [Vitis vinifera] gi|297733662|emb|CBI14909.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/229 (86%), Positives = 213/229 (93%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
ER +SGSG+NKNKAMVEHLQ YGVI SKKV++VMET+DRA FVPDG PPYVDSPM IGYN
Sbjct: 2 ERFFSGSGINKNKAMVEHLQRYGVINSKKVAQVMETVDRALFVPDGNPPYVDSPMQIGYN 61
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCL+LL+ENL+PGMHALD+GSGTGYLTACFALMVGPQG AVGVEHIPELV
Sbjct: 62 ATISAPHMHATCLELLQENLQPGMHALDVGSGTGYLTACFALMVGPQGCAVGVEHIPELV 121
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SSI+NIEKSAAAPLLKEGSL +H GDGR GWPE APYDAIHVGAAAPEIPQ LIDQLKP
Sbjct: 122 ASSIKNIEKSAAAPLLKEGSLKLHAGDGRLGWPECAPYDAIHVGAAAPEIPQPLIDQLKP 181
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
GGRMVIPVGNIFQDLKVVDKN DGS+SI SETSVRYVPLTSR+AQLR +
Sbjct: 182 GGRMVIPVGNIFQDLKVVDKNLDGSISIRSETSVRYVPLTSREAQLRDY 230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508746|ref|XP_003523115.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/229 (84%), Positives = 210/229 (91%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
+R S SG++KNKA+VE LQ YGVITS KV+EVMET+DRA FVPDG PY DSPMAIGYN
Sbjct: 79 QRFCSVSGLSKNKALVERLQRYGVITSSKVAEVMETVDRALFVPDGAAPYDDSPMAIGYN 138
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHA CLQLLEENL+PGMHALD+GSGTGYLTACFALMVGPQGRAVGVEHIPELV
Sbjct: 139 ATISAPHMHAMCLQLLEENLQPGMHALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELV 198
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SI+NI+KSAAA LK+GSLSVH GDGR+GWPEFAPYDAIHVGAAAPEIPQ LIDQLKP
Sbjct: 199 SFSIENIQKSAAAAQLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKP 258
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
GGRMVIPVGNIFQDLKVVDKN DGS+S+ +ETSVRYVPLTSR+AQLRG+
Sbjct: 259 GGRMVIPVGNIFQDLKVVDKNSDGSISVRTETSVRYVPLTSREAQLRGY 307
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255635264|gb|ACU17986.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/229 (84%), Positives = 210/229 (91%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
+R S SG++KNKA+VE LQ YGVITS KV+EVMET+DRA FVPDG PY DSPMAIGYN
Sbjct: 2 QRFCSVSGLSKNKALVERLQRYGVITSSKVAEVMETVDRALFVPDGAAPYDDSPMAIGYN 61
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHA CLQLLEENL+PGMHALD+GSGTGYLTACFALMVGPQGRAVGVEHIPELV
Sbjct: 62 ATISAPHMHAMCLQLLEENLQPGMHALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELV 121
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SI+NI+KSAAA LK+GSLSVH GDGR+GWPEFAPYDAIHVGAAAPEIPQ LIDQLKP
Sbjct: 122 SFSIENIQKSAAAAQLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKP 181
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
GGRMVIPVGNIFQDLKVVDKN DGS+S+ +ETSVRYVPLTSR+AQLRG+
Sbjct: 182 GGRMVIPVGNIFQDLKVVDKNSDGSISVRTETSVRYVPLTSREAQLRGY 230
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388504744|gb|AFK40438.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/228 (83%), Positives = 209/228 (91%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
E+ WSGS VN+NK MVE+LQ YGVI S+KV+E+METIDR FVP+G PYVDSPM IGYN
Sbjct: 2 EQYWSGSAVNRNKGMVENLQQYGVIKSRKVAEIMETIDRGLFVPNGAQPYVDSPMLIGYN 61
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLEENL+PGM ALD+GSGTGYLTACFALMVGPQGR +GVEHIPELV
Sbjct: 62 ATISAPHMHATCLQLLEENLQPGMRALDVGSGTGYLTACFALMVGPQGRTIGVEHIPELV 121
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SIQNIEKSAAAP LK+GSLSV+V DGR+GWPEFAPYDAIHVGAAAPEIPQALIDQLKP
Sbjct: 122 SFSIQNIEKSAAAPQLKDGSLSVYVTDGRQGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 181
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
GGRMVIPVG IFQDLKVVDKN DG++SI +ETSVRYVPLTS++AQL+G
Sbjct: 182 GGRMVIPVGTIFQDLKVVDKNSDGAISIRTETSVRYVPLTSKEAQLQG 229
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388495586|gb|AFK35859.1| unknown [Lotus japonicus] gi|388502466|gb|AFK39299.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/228 (83%), Positives = 209/228 (91%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
E+ WSGS VN+NK MVE+LQ YGVI S+KV+E+METIDR FVP+G PYVDSPM IGYN
Sbjct: 2 EQYWSGSAVNRNKGMVENLQQYGVIKSRKVAEIMETIDRGLFVPNGAQPYVDSPMLIGYN 61
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLEENL+PGM ALD+GSGTGYLTACFALMVGPQGR VGVEHIPELV
Sbjct: 62 ATISAPHMHATCLQLLEENLQPGMRALDVGSGTGYLTACFALMVGPQGRTVGVEHIPELV 121
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SIQNIEKSAAAP LK+GSLSV+V DGR+GWPE APYDAIHVGAAAPEIPQALIDQLKP
Sbjct: 122 SFSIQNIEKSAAAPQLKDGSLSVYVTDGRQGWPESAPYDAIHVGAAAPEIPQALIDQLKP 181
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
GGRMVIPVGNIFQDLKVVDKN DG++SI +ETSVRYVPLTS++AQL+G
Sbjct: 182 GGRMVIPVGNIFQDLKVVDKNSDGAISIRTETSVRYVPLTSKEAQLQG 229
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501340|ref|XP_004161342.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/227 (81%), Positives = 206/227 (90%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
ER WSGSG+ NK MVE LQ YGV+ SK+VSEVME+IDRA FVPD PPYVD+P+ IGYN
Sbjct: 83 ERFWSGSGIGTNKDMVEKLQTYGVVRSKRVSEVMESIDRAFFVPDDVPPYVDTPVPIGYN 142
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLE++L+PGM ALD+GSGTGYLTACFALMVGP+GR VGVEHIPELV
Sbjct: 143 ATISAPHMHATCLQLLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRVVGVEHIPELV 202
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SS++NI+KSAAAPLLKEGSLS+HVGDGR+GW E APYDAIHVGAAA EIP ALIDQLKP
Sbjct: 203 ASSMENIKKSAAAPLLKEGSLSLHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKP 262
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 296
GGRMVIPVGN+FQDLKVVDK+ DGS+SI ETSVRYVPLTSR+AQLR
Sbjct: 263 GGRMVIPVGNVFQDLKVVDKDSDGSVSIHDETSVRYVPLTSREAQLR 309
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388515459|gb|AFK45791.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/228 (80%), Positives = 203/228 (89%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
E+ WSGS +NKNK MVE+LQ+YG+I S+KV+E ME IDR FVP+G PY+DSPMAIGYN
Sbjct: 2 EQYWSGSAINKNKGMVENLQNYGIIKSRKVAETMENIDRGVFVPNGAQPYIDSPMAIGYN 61
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHA CLQLLE L+PGMHALD+GSGTGYLTACFALMVG GR VGVEHIPELV
Sbjct: 62 ATISAPHMHAICLQLLENYLQPGMHALDVGSGTGYLTACFALMVGSNGRTVGVEHIPELV 121
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SSI+NIEKSAAAPLLK+GSLSVH DGR+GWP+FAPYDAIHVGAAAPEIPQ LIDQLKP
Sbjct: 122 SSSIKNIEKSAAAPLLKDGSLSVHDCDGRQGWPDFAPYDAIHVGAAAPEIPQPLIDQLKP 181
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
GGRMVIPVGN QDLKVVDKN DGS+SI +ETSVRYVPLTS++AQL G
Sbjct: 182 GGRMVIPVGNALQDLKVVDKNSDGSISIRTETSVRYVPLTSKEAQLNG 229
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| TAIR|locus:504955645 | 230 | PIMT1 "protein-l-isoaspartate | 0.755 | 0.978 | 0.773 | 3.8e-94 | |
| TAIR|locus:2157767 | 309 | PIMT2 "protein-l-isoaspartate | 0.768 | 0.741 | 0.716 | 9.9e-87 | |
| UNIPROTKB|P80895 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.748 | 0.982 | 0.510 | 9.9e-55 | |
| UNIPROTKB|E1BXJ0 | 228 | LOC423008 "Protein-L-isoaspart | 0.734 | 0.960 | 0.515 | 1.6e-54 | |
| UNIPROTKB|Q5F3N1 | 228 | PCMT1 "Protein-L-isoaspartate( | 0.734 | 0.960 | 0.515 | 2.6e-54 | |
| UNIPROTKB|P15246 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.748 | 0.982 | 0.506 | 3.4e-54 | |
| MGI|MGI:97502 | 227 | Pcmt1 "protein-L-isoaspartate | 0.748 | 0.982 | 0.506 | 5.5e-54 | |
| RGD|3268 | 227 | Pcmt1 "protein-L-isoaspartate | 0.748 | 0.982 | 0.506 | 7e-54 | |
| UNIPROTKB|P22062 | 227 | Pcmt1 "Protein-L-isoaspartate( | 0.748 | 0.982 | 0.506 | 7e-54 | |
| UNIPROTKB|J3KP72 | 285 | PCMT1 "Protein-L-isoaspartate | 0.748 | 0.782 | 0.502 | 1.1e-53 |
| TAIR|locus:504955645 PIMT1 "protein-l-isoaspartate methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 174/225 (77%), Positives = 202/225 (89%)
Query: 73 WSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATI 132
WS S +NKNKAMVE+LQ++G++TS +V++ ME +DR FV D + YVDSPM+IGYN TI
Sbjct: 5 WSPSSINKNKAMVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSSAYVDSPMSIGYNVTI 64
Query: 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 192
SAPHMHA CLQLLE++LKPGM LD+GSGTGYLTACFA+MVG +GRA+GVEHIPELV SS
Sbjct: 65 SAPHMHAMCLQLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASS 124
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGR 252
++NIE SAA+P LKEGSL+VHVGDGR+GW EFAPYDAIHVGAAAPEIP+ALIDQLKPGGR
Sbjct: 125 VKNIEASAASPFLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGR 184
Query: 253 MVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
+VIPVGNIFQDL+VVDKN DGS+SI ETSVRYVPLTSR+AQLRG
Sbjct: 185 LVIPVGNIFQDLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRG 229
|
|
| TAIR|locus:2157767 PIMT2 "protein-l-isoaspartate methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 164/229 (71%), Positives = 194/229 (84%)
Query: 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYN 129
E+ SG+G + + MVE+L+ YGVI+SK+V++VME +DR FVP G+ YVD+P+ IGYN
Sbjct: 81 EQFQSGTGSSGKRGMVENLKRYGVISSKRVAQVMEALDRGLFVPVGSSAYVDTPVPIGYN 140
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
ATISAPHMHATCLQLLE+ L PGM ALD+GSGTGYLT CFALMVG +GR VGV+HIPELV
Sbjct: 141 ATISAPHMHATCLQLLEDKLHPGMRALDVGSGTGYLTGCFALMVGAEGRVVGVDHIPELV 200
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
SI+NIEKS AA LK+GSLS+HVGDGRKGW EFAPYDAIHVGAAA EIPQ L+DQLKP
Sbjct: 201 DMSIKNIEKSVAASFLKKGSLSLHVGDGRKGWQEFAPYDAIHVGAAASEIPQPLLDQLKP 260
Query: 250 GGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
GGRMVIP+G FQ+LKV+DKN+DGS+ + +ETSVRYVPLTSR QL G+
Sbjct: 261 GGRMVIPLGTYFQELKVIDKNEDGSIKVHTETSVRYVPLTSRVEQLGGF 309
|
|
| UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 117/229 (51%), Positives = 153/229 (66%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVRKDDPM-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
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| UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 116/225 (51%), Positives = 154/225 (68%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W+ SG + +V +L G+I S++V +V+ DR ++ PY+DSP +IGY AT
Sbjct: 2 AWTSSG-KTHPELVNNLYKKGIIKSQRVFDVLLATDRGHYIKYF--PYMDSPQSIGYKAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL++ L G ALD+GSG+GYLTACFA MVGP G+AVGVEHI ELV
Sbjct: 59 ISAPHMHAHALELLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNE 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI+N+++ LL G + + VGDGR+G+PE APYDAIHVGAAAP +PQ L+++LKPGG
Sbjct: 119 SIRNVKEDDPT-LLSSGRVKLVVGDGRQGYPEEAPYDAIHVGAAAPTVPQELLNELKPGG 177
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294
R+++PVG Q L DK DG + V YVPLT ++ Q
Sbjct: 178 RLILPVGPEGANQVLMQYDKTSDGQIIETQLMGVIYVPLTDKEKQ 222
|
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| UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 116/225 (51%), Positives = 153/225 (68%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I S KV EVM DR + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKSDKVFEVMLATDRCHYAKYN--PYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACF+ MVGP+G+ VG++HI ELV
Sbjct: 59 ISAPHMHAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVKKDDPT-LLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294
R+++PVG Q L+ DK +DGS+ + V YVPLT ++ Q
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQ 222
|
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| UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 116/229 (50%), Positives = 152/229 (66%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N+ K LL G + + VGDGR G+ APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SINNVRKDDPM-LLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
| MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 116/229 (50%), Positives = 153/229 (66%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSN--PYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SITNVKKDDPM-LLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
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| RGD|3268 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 116/229 (50%), Positives = 153/229 (66%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSN--PYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SITNVKKDDPM-LLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
| UNIPROTKB|P22062 Pcmt1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 116/229 (50%), Positives = 153/229 (66%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 2 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSN--PYMDSPQSIGFQAT 58
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 59 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDD 118
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
SI N++K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 119 SITNVKKDDPM-LLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 177
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 178 RLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
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| UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 115/229 (50%), Positives = 152/229 (66%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 60 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQAT 116
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 117 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 176
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
S+ N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 177 SVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 235
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 236 RLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 284
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42539 | PIMT_ARATH | 2, ., 1, ., 1, ., 7, 7 | 0.7733 | 0.7550 | 0.9782 | yes | no |
| Q43209 | PIMT_WHEAT | 2, ., 1, ., 1, ., 7, 7 | 0.7142 | 0.7516 | 0.9739 | N/A | no |
| P15246 | PIMT_BOVIN | 2, ., 1, ., 1, ., 7, 7 | 0.5065 | 0.7483 | 0.9823 | yes | no |
| Q92047 | PIMT_DANRE | 2, ., 1, ., 1, ., 7, 7 | 0.5066 | 0.7348 | 0.9605 | yes | no |
| P80895 | PIMT_PIG | 2, ., 1, ., 1, ., 7, 7 | 0.5109 | 0.7483 | 0.9823 | yes | no |
| P22062 | PIMT_RAT | 2, ., 1, ., 1, ., 7, 7 | 0.5065 | 0.7483 | 0.9823 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.963 |
| 4th Layer | 2.1.1.77 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_XV1823 | hypothetical protein (230 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.168150001 | Predicted protein (259 aa) | • | • | 0.848 | ||||||
 | gw1.I.2892.1 | thymidylate kinase (EC-2.7.4.9) (210 aa) | • | • | 0.586 | ||||||
 | grail3.0006001701 | hypothetical protein (247 aa) | • | • | 0.562 | ||||||
 | gw1.XIX.1506.1 | glucosamine-fructose-6-phosphate aminotransferase (EC-2.6.1.16) (676 aa) | • | • | 0.431 | ||||||
 | eugene3.27090001 | Predicted protein (198 aa) | • | 0.417 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 298 | |||
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 1e-110 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 3e-71 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 7e-65 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 1e-59 | |
| PRK00312 | 212 | PRK00312, pcm, protein-L-isoaspartate O-methyltran | 1e-54 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 3e-44 | |
| TIGR04364 | 394 | TIGR04364, methyltran_FxLD, methyltransferase, FxL | 1e-30 | |
| PRK13943 | 322 | PRK13943, PRK13943, protein-L-isoaspartate O-methy | 4e-21 | |
| TIGR04188 | 363 | TIGR04188, methyltr_grsp, methyltransferase, ATP-g | 6e-15 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 1e-13 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-12 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 2e-08 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 5e-08 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 9e-08 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 2e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-07 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 1e-06 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 2e-05 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 3e-05 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 8e-05 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 3e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 7e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 8e-04 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 0.002 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 0.002 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-110
Identities = 129/218 (59%), Positives = 157/218 (72%), Gaps = 11/218 (5%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPH 136
N+N+A++E+L++YGVI S KV+E M +DR FVP+ Y D P++IGY TISAPH
Sbjct: 1 NRNEALIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPH 60
Query: 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196
MHA L+LLE LKPGM L+IGSG+GYLTACFA MVG G V +EHIPELV + +N+
Sbjct: 61 MHAMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNL 118
Query: 197 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256
EK ++ V VGDGR+GWPEFAPYDAIHVGAAAPEIP+ALIDQLK GGR+VIP
Sbjct: 119 EKLGLE------NVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIP 172
Query: 257 VG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293
VG N Q L+ DK DGS+ I VR+VPLT R+
Sbjct: 173 VGPNGNQVLQQFDKRNDGSVVIKDLEGVRFVPLTDREG 210
|
Length = 210 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 3e-71
Identities = 95/216 (43%), Positives = 129/216 (59%), Gaps = 11/216 (5%)
Query: 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHMH 138
KA+++ L + G I SK+V + + ++ R FVP+ YVD+P+ IGY TISAPHM
Sbjct: 7 KKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMV 66
Query: 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198
A +LLE LKPGM L+IG+G+GY A A +VG G V +E IPEL + + + K
Sbjct: 67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
Query: 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258
L ++ V VGDG +GW APYD I+V AA P+IP+ALIDQLK GG +V+PVG
Sbjct: 125 ------LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG 178
Query: 259 NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294
Q LK +K + G + I V +VPL +
Sbjct: 179 EYLQVLKRAEK-RGGEIIIKDVEPVAFVPLVGGEGF 213
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This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 7e-65
Identities = 98/217 (45%), Positives = 128/217 (58%), Gaps = 15/217 (6%)
Query: 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHM 137
+ + +VE L+ G IT ++V + + R FVP Y D + IG TISAPHM
Sbjct: 2 RGRMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHM 60
Query: 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
A LQLLE LKPG L+IG+G+GY A A +VG R V +E I EL + +N+E
Sbjct: 61 VARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLE 115
Query: 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257
L +++V GDG KGWPE APYD I V AAAPE+P+AL+DQLKPGGR+VIPV
Sbjct: 116 T------LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPV 169
Query: 258 GNIF-QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293
G+ Q L + K+ DG+ +VR+VPL D
Sbjct: 170 GSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGDG 206
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Length = 209 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 1e-59
Identities = 91/212 (42%), Positives = 127/212 (59%), Gaps = 11/212 (5%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPH 136
+ + ++E L G I SKKV + + + R FVP+ YVD+P+ IGY TISA H
Sbjct: 4 EEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIH 63
Query: 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196
M A +LL+ LK GM L+IG+G+GY A A +VG G+ V +E IPEL + + +
Sbjct: 64 MVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121
Query: 197 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256
+K L ++ V VGDG G+ E APYD I+V AA P+IP+ LI+QLK GG MVIP
Sbjct: 122 KK------LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP 175
Query: 257 VGNIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288
VG+ Q+L V+K+ +G + V +VPL
Sbjct: 176 VGSYSQELIRVEKD-NGKIIKKKLGEVAFVPL 206
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Length = 212 |
| >gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 1e-54
Identities = 82/216 (37%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHM 137
+ +V L+ G I ++V E +E R FVP+ Y + + IG TIS P+M
Sbjct: 8 RFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYM 66
Query: 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
A +LLE LKPG L+IG+G+GY A A +V R VE I L + + ++
Sbjct: 67 VARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLK 121
Query: 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257
+ L ++SV GDG KGWP +AP+D I V AAAPEIP+AL++QLK GG +V PV
Sbjct: 122 Q------LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPV 175
Query: 258 GNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293
G Q L + + G VR+VPL +
Sbjct: 176 GGEEQQLLTRVRKRGGRFEREVLEEVRFVPLVKGEL 211
|
Length = 212 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-44
Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 11/210 (5%)
Query: 82 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPD--GTPPYVDSPMAIGYNATISAPHMHA 139
K +VE L G+I S++V + M ++ R FV Y D P+ + ATISAPHM A
Sbjct: 3 KRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVA 62
Query: 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199
+L+E +PGM L++G+G+GY A A + +G+ VE + EL + + QNIE+
Sbjct: 63 MMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER- 119
Query: 200 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG- 258
L G + V+ GDG++G + AP+DAI V AAA IP AL+ QLK GG +VIPV
Sbjct: 120 ----LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEE 175
Query: 259 NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288
+ Q L V K + + + T V +VPL
Sbjct: 176 GVGQVLYKVVKRGEK-VEKRAITYVLFVPL 204
|
Length = 205 |
| >gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 67/193 (34%), Positives = 90/193 (46%), Gaps = 36/193 (18%)
Query: 83 AMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNA------------ 130
A+V+ L+ GVI S +V T+ R F P +P+ Y A
Sbjct: 7 ALVDELREDGVIRSPRVEAAFRTVPRHLFAPG-------APLEKAYAANRAVVTKRDEDG 59
Query: 131 ----TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP 186
++SAPH+ A L+ ++PGM L+IGSG GY A A +VGP G V+
Sbjct: 60 AALSSVSAPHIQAMMLEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDE 116
Query: 187 ELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRKGWPEFAPYDAIHVGAAAPEIPQALI 244
++ A A L G V V D G PE APYD I V A +IP A +
Sbjct: 117 DVT--------DRARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWL 168
Query: 245 DQLKPGGRMVIPV 257
DQL PGGR+V+P+
Sbjct: 169 DQLAPGGRLVVPL 181
|
Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394 |
| >gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 4e-21
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 13/140 (9%)
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
+T S P + A ++ + L GM L+IG GTGY A + +VG +G V VE+ ++
Sbjct: 61 STSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC 118
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
+ +N+ + L ++ GDG G PEFAPYD I V E+P+ QLK
Sbjct: 119 EIAKRNVRR------LGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKE 172
Query: 250 GGRMVIPVGNIFQDLKVVDK 269
GGR+++P+ +LK+ +
Sbjct: 173 GGRVIVPI-----NLKLSRR 187
|
Length = 322 |
| >gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-15
Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 51/216 (23%)
Query: 84 MVEHLQHYGVITSKKVSEVMETIDRACFVP------------------------------ 113
+ L GV+T E +E + R F+P
Sbjct: 1 LAARLAAAGVLTDPAWREAVEAVPRHLFLPGFFEPLPDGRGWRPVTADRPDPDEWLALVY 60
Query: 114 ---------DGTPPYVDSPMAIGYNATISA--PHMHATCLQLLEENLKPGMHALDIGSGT 162
DG + + T S+ P + A L+ L+ ++ G L+IG+GT
Sbjct: 61 SDETLVTQLDGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGT 118
Query: 163 GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222
GY A +G VE P L + + + AP +V GDG G P
Sbjct: 119 GYSAALLCHRLG-DDNVTSVEVDPGLAARAASALAAAGYAP-------TVVTGDGLLGHP 170
Query: 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258
APYD I A +P A + Q +PGG ++ +
Sbjct: 171 PRAPYDRIIATCAVRRVPPAWLRQTRPGGVILTTLS 206
|
Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
++ + A L L +PG DIG+GTG +T + GP GR + +E E +
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSIT-IEWALAGPSGRVIAIERDEEALEL 73
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVG--AAAPEIPQALIDQLKP 249
+N + +L V GD + P+ DAI +G EI +A ++LKP
Sbjct: 74 IERNAAR------FGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKP 127
Query: 250 GGRMVI 255
GGR+V
Sbjct: 128 GGRLVA 133
|
Length = 187 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-12
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210
PG LDIG GTG L A + P R GV+ PE ++ ++A L +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLF-PGARVTGVDLSPE----MLELARENAKLALGPR--I 53
Query: 211 SVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255
+ GD +DA+ +G ++ AL LKPGGR+V+
Sbjct: 54 TFVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
+ PG L+ G+G+G LTA A VGP+G E + ++ +N+ +
Sbjct: 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-----FGLG 145
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKV 266
+++ +GD R+G E DA+ + P + + + D LKPGG +V+ + Q K
Sbjct: 146 DRVTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKT 204
Query: 267 VDK 269
V+
Sbjct: 205 VEA 207
|
Length = 256 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
++ + A L L L+PG DIG+GTG +T A +V GR +E PE
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPE---- 54
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAIHVGAAA---PEIPQALIDQL 247
++ IE++ ++ + GD + + P DA+ VG + EI +A+ +L
Sbjct: 55 ALDLIERNLRR--FGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEILEAVERRL 112
Query: 248 KPGGRMVIPV 257
+PGGR+V+
Sbjct: 113 RPGGRIVLNA 122
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-08
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
L+LL P L+IG+ GY AL + GR +E E + +
Sbjct: 44 DPETGALLRLLARLSGPK-RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE 102
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA--PYDAIHVGAAAPEIPQAL---IDQLKP 249
N+ ++ ++ + GD +D + + A + P+ L + L+P
Sbjct: 103 NLAEAGVDDRIEL----LLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRP 158
Query: 250 GGRMVIPVGNIFQDLKVVDK 269
GG +I N+ +V D
Sbjct: 159 GG--LIVADNVLFGGRVADP 176
|
Length = 219 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 143 QLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
+LL +L G LD+G G G L A A P V+ I + S + +
Sbjct: 21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVD-INARALESAR---ANL 75
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVG-AAAPEIPQALIDQ----LKP 249
AA L+ G V D +D I H G A ++ Q I LKP
Sbjct: 76 AANGLENG--EVFWSDLYSAVEP-GKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKP 132
Query: 250 GGRMVIPVGNIFQ 262
GG + I V N
Sbjct: 133 GGELWI-VANRHL 144
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
LK G+ LD+G GTGYLT A +GP VG++ E + + +N +K L
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK------LGYE 54
Query: 209 SLSVHVGD----GRKGWPEFAPYD------AIHVGAAAPEIPQALIDQLKPGGRMVI 255
++ GD + + +D ++ ++ + +I LKPGG +++
Sbjct: 55 NVEFIQGDIEELPQLQLED-NSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIV 110
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
++PG LD+G G G A VGP+GR VG++ ++ + K AA L
Sbjct: 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-----ALAKERAAGLG-- 68
Query: 208 GSLSVHVGDGRKGWPEFAP--YDAI-------HVGAAAPEIPQALIDQ---LKPGGRMVI 255
++ GD F +DA+ H+ + +AL + L+PGGR+V+
Sbjct: 69 PNVEFVRGDADG--LPFPDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVV 122
|
Length = 241 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-07
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215
LD+G GTG L AL GP R GV+ P ++ K+AAA L ++ V G
Sbjct: 3 LDLGCGTGALAL--ALASGPGARVTGVDISPVA----LELARKAAAA--LLADNVEVLKG 54
Query: 216 DGRKGWP-EFAPYDAI---HVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
D + P +D I E +++ LKPGG +V+ +
Sbjct: 55 DAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-07
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211
G LD G+G+G A GP R VGVE PE + + + + AP +
Sbjct: 1 GDRVLDPGAGSGAFLL-AAARAGPDARVVGVELDPEAAALARRRLALAGLAPR-----VR 54
Query: 212 VHVGDGRK-GWPEFAPYDAI------HVGAAAPEIPQALIDQ--------LKPGGRMVI 255
V VGD R+ +D + A P+ + L D+ LKPGG +V+
Sbjct: 55 VVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
L L + L+ G LDIG GTG +T +L+VG G+ V+ + + + +N EK
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV 90
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAP-YDAIHVGAAA---PEIPQALIDQLKPGGRMVIPV 257
++ + G+ + +D I +G + EI A + +K GGR+VI
Sbjct: 91 L-----NNIVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA 145
|
Length = 198 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 138 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-SSI 193
H T CL+ LE+ + PG LD+G G+G L A A +G + + V+ I V ++
Sbjct: 103 HPTTRLCLEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLGA-KKVLAVD-IDPQAVEAAR 159
Query: 194 QNIE 197
+N E
Sbjct: 160 ENAE 163
|
Length = 250 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 138 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
H T CL+ LE+ LK G LD+G G+G L A A +G + VGV+ P+ V ++ +
Sbjct: 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGIL-AIAAAKLGA-KKVVGVDIDPQAVEAARE 203
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI--------HVGAAAPEIPQALIDQ 246
N + L++ + PE P+D I V AP+I
Sbjct: 204 NARLNGVELLVQAK-----GFLLLEV-PENGPFDVIVANILAEVLV-ELAPDI----KRL 252
Query: 247 LKPGGR 252
LKPGGR
Sbjct: 253 LKPGGR 258
|
Length = 300 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 138 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
H T CL+ LE +KPG LD+G G+G L A AL +G + + VGV+ P V ++ +
Sbjct: 144 HPTTALCLEALESLVKPGETVLDVGCGSGIL-AIAALKLGAK-KVVGVDIDPVAVRAAKE 201
Query: 195 NIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKP 249
N E + L+ V++ GD +G D + V + L +KP
Sbjct: 202 NAELNGVEAQLE-----VYLPGDLPEG-----KADVV-VANILADPLIELAPDIYALVKP 250
Query: 250 GGRMVI 255
GG +++
Sbjct: 251 GGYLIL 256
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-04
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
++PG LD+ GTG L A VG G VG++ ++ + + L
Sbjct: 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-----AVGREKLRDLGLS 102
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQ-----LKPGGRMV 254
G++ GD E P+ A P+I +AL + LKPGGR+V
Sbjct: 103 GNVEFVQGDA-----EALPFPDNSFDAVTIAFGLRNVPDIDKAL--REMYRVLKPGGRLV 155
Query: 255 I 255
I
Sbjct: 156 I 156
|
Length = 239 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 40.3 bits (91), Expect = 7e-04
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204
L L G+ LDIG GTG L A + G VGV+ PE++ + E +
Sbjct: 42 LLRLLPGGLGVLDIGCGTGRLAL-LARLGGRGAYVVGVDLSPEMLALARARAEGA----- 95
Query: 205 LKEGSLSVHVGDGRKGWPEFAP---YDAI-----HVGAAAPEIPQALIDQLKPGGRMVI 255
G + V D G F +D + + + L+ LKPGGR+V+
Sbjct: 96 -GLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVL 153
|
Length = 257 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 144 LLEENL--KPGMHALDIGSGTGYLTACFALM 172
LL EN K G L++G+G+G + A
Sbjct: 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN 44
|
Length = 188 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 32/130 (24%)
Query: 142 LQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEK 198
L L+ E LKPGM LDIG G G L G VGV L + EK
Sbjct: 61 LDLILEKLGLKPGMTLLDIGCGWGGLA---IYAAEEYGVTVVGV----TLSEEQLAYAEK 113
Query: 199 SAAAPLLKEGSLSVHVGDGR-KGWPEFA-PYDAI-------HVGAAAPEIPQALIDQ--- 246
AA L++ +V V R + + +F P+D I HVG E +
Sbjct: 114 RIAARGLED---NVEV---RLQDYRDFEEPFDRIVSVGMFEHVG---KENYDDFFKKVYA 164
Query: 247 -LKPGGRMVI 255
LKPGGRM++
Sbjct: 165 LLKPGGRMLL 174
|
Length = 283 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 148 NLKPGMHALDIGSGTGYLTACF--ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205
LKPG LD+GSG G+ CF A VGP G+ +GV+ PE++ + N K+ +
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV- 130
Query: 206 KEGSLSVHVGDGRKGWPEFAP-----YDAI---HVGAAAPEIPQALIDQ---LKPGGRMV 254
+ R G E P D I V +P+ + + LKPGGR
Sbjct: 131 ----------EFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFA 180
Query: 255 I 255
I
Sbjct: 181 I 181
|
Length = 272 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 100.0 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 100.0 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 100.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 100.0 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 100.0 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 100.0 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.98 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.68 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.68 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.67 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.67 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.62 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.61 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.6 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.59 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.59 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.58 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.57 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.57 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.55 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.54 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.52 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.52 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.52 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.51 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.5 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.5 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.5 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.5 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.49 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.49 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.49 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.48 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.48 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.47 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.47 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.45 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.44 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.44 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.44 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.43 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.43 | |
| PLN02476 | 278 | O-methyltransferase | 99.42 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.42 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.42 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.41 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.41 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.41 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.4 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.4 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.4 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.39 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.39 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.38 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.38 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.37 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.37 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.37 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.37 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.36 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.36 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.36 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.36 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.35 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.35 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.35 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.34 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.34 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.34 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.33 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.33 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.33 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.32 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.32 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.32 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.31 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.31 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.31 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.3 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.3 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.3 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.29 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.28 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.28 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.27 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.27 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.26 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.26 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.25 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.25 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.24 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.24 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.23 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.22 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.22 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.21 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.2 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.19 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.17 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.16 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.15 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.15 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.14 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.14 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.14 | |
| PLN02366 | 308 | spermidine synthase | 99.14 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.13 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.11 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.11 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.11 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.1 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.09 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.08 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.08 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.08 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.08 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.08 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.06 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.06 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.04 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.04 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.04 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.04 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.04 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.02 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.0 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.98 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.98 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.97 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.97 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.95 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.94 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.94 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.93 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.91 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.91 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.91 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.9 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.89 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.85 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.85 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.85 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.83 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.82 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.82 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.81 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.81 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.79 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.78 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.77 | |
| PLN02823 | 336 | spermine synthase | 98.76 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.76 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.75 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.74 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.73 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.7 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.7 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.7 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.68 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.66 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.65 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.63 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.62 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.62 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.61 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.6 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.6 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.58 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.57 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.57 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.56 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.55 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.55 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.55 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.54 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.54 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.54 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.52 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.5 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.49 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.48 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.47 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.44 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.42 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.42 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.38 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.38 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.35 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.32 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.3 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.3 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.3 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.3 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.29 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.2 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.16 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.16 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.15 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.13 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.12 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.04 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.04 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.03 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.01 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.98 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.94 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.91 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.91 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.91 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.9 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.84 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.84 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.83 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.83 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.82 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.81 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.74 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.73 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.69 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.68 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.65 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.62 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.57 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.56 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.55 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.52 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.52 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.5 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.42 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.4 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.38 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.35 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.33 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.31 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.3 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.27 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.21 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.16 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.12 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.09 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.08 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.07 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.0 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.99 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.98 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.97 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.91 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.9 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.89 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.82 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.81 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 96.7 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.68 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.48 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.47 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.25 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.25 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.23 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.19 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 96.16 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.12 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.08 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.05 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.98 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.98 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.97 | |
| PHA01634 | 156 | hypothetical protein | 95.93 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.91 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 95.88 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.87 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.66 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.63 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.52 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.52 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.23 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.2 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.02 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 94.97 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.95 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.95 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.92 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 94.88 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.86 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.85 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.85 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 94.79 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.78 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.68 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.66 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.62 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 94.53 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.52 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.39 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 94.35 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 94.33 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 94.33 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 94.32 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.23 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.05 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.02 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 94.0 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 93.89 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 93.8 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 93.78 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.76 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.75 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 93.42 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 93.41 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 93.3 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 93.3 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.28 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 93.24 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.17 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 93.09 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 93.04 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 92.96 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 92.78 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 92.73 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 92.73 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 92.69 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 92.56 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 92.5 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 92.48 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 92.42 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 92.12 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.08 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 92.08 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 91.95 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 91.84 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 91.65 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 91.62 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 91.59 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 91.44 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 91.42 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 91.35 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.31 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 91.27 | |
| PLN02494 | 477 | adenosylhomocysteinase | 91.16 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 91.12 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.89 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 90.83 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.67 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 90.45 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 90.35 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.34 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 90.23 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 90.12 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 90.07 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.06 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 90.0 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 89.96 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 89.81 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 89.71 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 89.7 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 89.61 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 89.31 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 89.1 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 88.95 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 88.81 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 88.79 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 88.67 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 88.58 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 88.58 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 88.14 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 88.02 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 87.96 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 87.84 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 87.77 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 87.73 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 87.53 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 87.32 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 87.26 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.21 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 86.92 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 86.84 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 86.7 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.58 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 86.25 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 85.96 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 85.94 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 85.83 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 85.81 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 85.69 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 85.66 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 85.62 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 85.57 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 85.55 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 85.39 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 84.98 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.78 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 84.76 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 84.01 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 83.61 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 83.51 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 83.37 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 83.23 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 82.86 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 82.62 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 82.57 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 82.27 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 82.17 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 82.15 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 82.14 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 82.11 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 82.03 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 81.94 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 81.88 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 81.87 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 80.08 |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=289.09 Aligned_cols=199 Identities=48% Similarity=0.783 Sum_probs=188.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEc
Q 022372 82 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIG 159 (298)
Q Consensus 82 ~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG 159 (298)
..|+++|+..|+ .++++.+||..|||+.|+|+. ..+|.|.++++++|+++++|+++++|++.|. ++++++|||||
T Consensus 4 ~~l~~~lr~~~i-~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEGI-TDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence 568899999995 779999999999999999988 8999999999999999999999999999998 99999999999
Q ss_pred CCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCchh
Q 022372 160 SGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI 239 (298)
Q Consensus 160 ~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l 239 (298)
||+||.++.||+.. ++|+++|+.+++.+.|++|+...+. .||.++++|+..++++.++||+|+++++.+.+
T Consensus 81 tGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~v 151 (209)
T COG2518 81 TGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEV 151 (209)
T ss_pred CCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEEEEeeccCCC
Confidence 99999999999998 5999999999999999999988554 68999999999999999999999999999999
Q ss_pred HHHHHhccccCcEEEEEEC-CCceeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 240 PQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 240 ~~~l~~~LkpGG~Lvi~v~-~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
|+.+.++||+||+|++|++ ...|.+..++|.+++.+.++.+++|+|+||..+.
T Consensus 152 P~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~ 205 (209)
T COG2518 152 PEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD 205 (209)
T ss_pred CHHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc
Confidence 9999999999999999999 5679999999998989999999999999998843
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=293.50 Aligned_cols=204 Identities=46% Similarity=0.748 Sum_probs=178.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEE
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDI 158 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDi 158 (298)
|++||++|++.|.++++++.+||++|||+.|+|+. ..+|.|.++++++++++++|++++++++.|. +++|++||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeI 79 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEI 79 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEe
Confidence 78999999999988999999999999999999996 7999999999999999999999999999998 9999999999
Q ss_pred cCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 159 GSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 159 G~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
|||+||.++.+++++++.++|+++|+++++++.|++++...+. .|+.++++|+..++++.++||+|+++++.++
T Consensus 80 GtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 80 GTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp S-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred cCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcCEEEEeeccch
Confidence 9999999999999998888999999999999999999998665 6999999999999988889999999999999
Q ss_pred hHHHHHhccccCcEEEEEECC-CceeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 239 IPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 239 l~~~l~~~LkpGG~Lvi~v~~-~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
+|..+.++||+||+||+|++. ..|.+..++|..+|.++.+.+++|+||||+...
T Consensus 154 ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 154 IPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp --HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 999999999999999999994 568999999998899999999999999998763
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=270.68 Aligned_cols=227 Identities=54% Similarity=0.928 Sum_probs=209.6
Q ss_pred hcccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHcc
Q 022372 71 RSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEEN 148 (298)
Q Consensus 71 ~~~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~ 148 (298)
|+|...+ ++|++++++|++.++|...++.+||++++|..|.|.. ..+|.|.|+.+|++.++++|++++.+++.|..+
T Consensus 1 m~~~s~g-s~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~ 79 (237)
T KOG1661|consen 1 MGWVSSG-SDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDH 79 (237)
T ss_pred CCccccC-cchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHh
Confidence 4576665 7899999999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhcc----CCccCCCCEEEEEcCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~----~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
++||.+.||+|+||||++.+++.+++..+. ++|||..+++++.+++|+.++-. ...+...++.++.||++.++++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 999999999999999999999999877665 49999999999999999987652 2335568899999999999999
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEEC--CCceeEEEEEEcCCCCeEEEEeeeEEEeecccchhhhcCC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~--~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~~~~~ 298 (298)
.++||+|+++++..++++++..+|++||++++|++ ...|.++.+++..+|++....+|.|+|||||+...|+.+|
T Consensus 160 ~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 160 QAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred cCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCCC
Confidence 99999999999999999999999999999999999 4579999999999999999999999999999999999876
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=262.14 Aligned_cols=205 Identities=44% Similarity=0.705 Sum_probs=188.7
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
..+++||++|.+.|.++|+++.+||+.|||+.|+|+. ..+|.|.++++++|+++++|++.+.+++.+. ++++++||
T Consensus 4 ~~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VL 81 (212)
T PRK13942 4 EEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVL 81 (212)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEE
Confidence 3568999999999989999999999999999999997 6899999999999999999999999999997 88999999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++.+++.++|+++|+++++++.|+++++..+. .+++++.+|+...+++.++||+|+++...
T Consensus 82 dIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 82 EIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred EECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 999999999999999987778999999999999999999987553 68999999998877766899999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCCceeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
+++++.+.++|||||+++++++...|.+..+++.. +.+..+.+++++|+||+++.
T Consensus 156 ~~~~~~l~~~LkpgG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~ 210 (212)
T PRK13942 156 PDIPKPLIEQLKDGGIMVIPVGSYSQELIRVEKDN-GKIIKKKLGEVAFVPLIGKN 210 (212)
T ss_pred ccchHHHHHhhCCCcEEEEEEcCCCcEEEEEEEEC-CEEEEEEeccEEEEecccCC
Confidence 99999999999999999999998778888888864 77999999999999998763
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=256.36 Aligned_cols=209 Identities=45% Similarity=0.752 Sum_probs=190.7
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
+.|++||++|.+.|.+.++++.+||++|||+.|+|+. ..+|.|.+++++.+++++.|.+++.+++.+. ++++.+||
T Consensus 5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VL 82 (215)
T TIGR00080 5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVL 82 (215)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEE
Confidence 5689999999999988999999999999999999986 6899999999999999999999999999997 88999999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++..+++++|+++|+++++++.|++++.+.+. ++++++.+|+.+.++..++||+|+++.+.
T Consensus 83 DiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 83 EIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 999999999999999976667899999999999999999988654 68999999998776655789999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCCceeEEEEEEcCCCCeEEEEeeeEEEeecccchhhhc
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 296 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~~~ 296 (298)
+++++.+.++|||||+++++++...+.+..+++. ++.|..+.+++|+|+||+.+.+|++
T Consensus 157 ~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~ 215 (215)
T TIGR00080 157 PKIPEALIDQLKEGGILVMPVGEYLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQG 215 (215)
T ss_pred ccccHHHHHhcCcCcEEEEEEcCCceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCCC
Confidence 9999999999999999999999877888888775 5679999999999999999887753
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=252.41 Aligned_cols=201 Identities=41% Similarity=0.575 Sum_probs=181.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEE
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDI 158 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDi 158 (298)
++.||++|++.|.+++++|.+||++|||+.|+|+. ..+|.|.+++++.+++++.|++.+.+++.+. ++++++|||+
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence 56899999999988999999999999999999987 6899999999999999999999999999987 7889999999
Q ss_pred cCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 159 GSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 159 G~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
|||+|+.+..+++.+++.++|+++|+++++++.|++++...+.. .+++++.+|+.+.++..++||+|+++.+.++
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcccCCccCCCccEEEEccCcch
Confidence 99999999999998766679999999999999999999876543 4699999999887766679999999999999
Q ss_pred hHHHHHhccccCcEEEEEECCC-ceeEEEEEEcCCCCeEEEEeeeEEEeecc
Q 022372 239 IPQALIDQLKPGGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLT 289 (298)
Q Consensus 239 l~~~l~~~LkpGG~Lvi~v~~~-~q~~~~~~~~~~g~~~~~~l~~v~fvPl~ 289 (298)
+++++.++|||||+|++|++.. .|.+..++|. ++.++.+.+++|+||||.
T Consensus 155 ~~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 155 IPSALVRQLKDGGVLVIPVEEGVGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred hhHHHHHhcCcCcEEEEEEcCCCceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 9999999999999999999874 4677888886 456999999999999984
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=228.78 Aligned_cols=202 Identities=41% Similarity=0.650 Sum_probs=181.3
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
+.|++|+++|+..| +.++++.+||+.+||+.|+|+. ..+|.|.+++++.++++++|.+.+.+++.+. ++++.+||
T Consensus 7 ~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VL 83 (212)
T PRK00312 7 ERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83 (212)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEE
Confidence 56899999999999 6899999999999999999965 7899999999999999999999999999886 88899999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++.. .+|+++|+++++++.|++++.+.+. .++++..+|..+.++..++||+|+++...
T Consensus 84 eiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred EECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 99999999999988875 4899999999999999999987654 57999999987776655789999999999
Q ss_pred chhHHHHHhccccCcEEEEEEC-CCceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 237 PEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~-~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
+++++.+.++|+|||+++++++ +..+.+..+++ .++.+..+.+++++|+|++++.+
T Consensus 155 ~~~~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 211 (212)
T PRK00312 155 PEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKGEL 211 (212)
T ss_pred hhhhHHHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCCCC
Confidence 9999999999999999999998 34566777777 46779999999999999998764
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=211.65 Aligned_cols=203 Identities=28% Similarity=0.450 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC---CCCCCCCCccc-cCC---CccChHHHHHHHHHHHHccCCCC
Q 022372 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI-GYN---ATISAPHMHATCLQLLEENLKPG 152 (298)
Q Consensus 80 ~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~---~~aY~d~~~~~-g~~---~~is~p~~~~~~l~~L~~~l~~g 152 (298)
.++.|+++|+..| +++ ++.+||.+|||+.|+|+. ..+|.|.++++ ..+ +++++|.+.+++++.+. ++++
T Consensus 6 ~~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g 81 (322)
T PRK13943 6 MREKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKG 81 (322)
T ss_pred HHHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCC
Confidence 4678999999999 577 999999999999999985 46799999875 444 57889999999999887 8889
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
++|||+|||+|+.+..+++..+..++|+++|+++++++.|+++++..+. .++.++.+|+...+++.++||+|++
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCccEEEE
Confidence 9999999999999999999876556899999999999999999987554 6899999998877665578999999
Q ss_pred CCCCchhHHHHHhccccCcEEEEEECCC---ceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 233 GAAAPEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 233 ~~~~~~l~~~l~~~LkpGG~Lvi~v~~~---~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
+.+.++++..+.++|+|||+++++++.. .+....+++. .+.++....+.++|+|.....+
T Consensus 156 ~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg 218 (322)
T PRK13943 156 TVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLG 218 (322)
T ss_pred CCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchHH
Confidence 9999999999999999999999988653 3555566665 4558888889999999965544
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=140.34 Aligned_cols=107 Identities=26% Similarity=0.453 Sum_probs=93.3
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+.+.+. .++|.+|||+|||||..+..+++..+ .++|+++|+|+.|++.|+++....+. .+++++++|+..
T Consensus 42 ~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~ 112 (238)
T COG2226 42 ALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAEN 112 (238)
T ss_pred HHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhh
Confidence 3445444 55899999999999999999999987 68999999999999999999987554 359999999999
Q ss_pred CCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi 255 (298)
.+.++++||++.+..+++. ..+++.|+|||||++++
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence 8888899999999998864 44899999999999887
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=142.09 Aligned_cols=108 Identities=31% Similarity=0.527 Sum_probs=80.4
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..+|.+|||+|||+|..+..+++..++.++|+++|++++|++.|+++....+. .+++++++|+.+
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~ 109 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAED 109 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHH
Confidence 4555554 78889999999999999999999888888999999999999999999987554 599999999998
Q ss_pred CCCCCCCccEEEECCCCchhH------HHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi 255 (298)
.+.++++||+|++..+++.++ ++++++|||||++++
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 777779999999999886543 789999999999987
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=121.13 Aligned_cols=101 Identities=29% Similarity=0.505 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
|+.+|||+|||+|..+..+++.. +..+|+|+|+++++++.|+++..+.+.. ++++++++|........++||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS-----DRITFVQGDAEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT-----TTEEEEESCCHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECccccCcccCCCCCEE
Confidence 57899999999999999999963 5589999999999999999999665543 79999999992122233579999
Q ss_pred EECC-CCc---------hhHHHHHhccccCcEEEEEE
Q 022372 231 HVGA-AAP---------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 231 i~~~-~~~---------~l~~~l~~~LkpGG~Lvi~v 257 (298)
++.. ... .+.+.+.+.|+|||++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 332 23578899999999999853
|
... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=128.88 Aligned_cols=122 Identities=33% Similarity=0.525 Sum_probs=108.2
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+..++++.+.+..+..|. +++|++++|||||||..+..++. .+|.++|+++|.++++++..++|.++.+. +
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~ 84 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFGV------D 84 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC------C
Confidence 455889999999999998 99999999999999999999994 47889999999999999999999998654 8
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+.++.|++.+.+++..+||+||.+... +.+++.+.+.|||||++|+..-.
T Consensus 85 n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 85 NLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred cEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9999999998877664579999999874 56789999999999999996643
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=135.93 Aligned_cols=134 Identities=28% Similarity=0.437 Sum_probs=116.0
Q ss_pred ccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022372 126 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205 (298)
Q Consensus 126 ~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l 205 (298)
+..+.++..|...++++..+. +.||++|||.|+|||.++++|+..+++.++|++.|+.++..+.|++|++..++.
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--- 145 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--- 145 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---
Confidence 445566667777889999987 999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCCceeEEEE
Q 022372 206 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKVV 267 (298)
Q Consensus 206 ~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~ 267 (298)
+++++..+|..+...+ +.||+|+.+.+-+ ++.+.+.+.|||||.+++-+++..|..+.+
T Consensus 146 --d~v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~ 205 (256)
T COG2519 146 --DRVTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV 205 (256)
T ss_pred --cceEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 5599999999987766 4999999999887 477999999999999999888765544333
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=134.49 Aligned_cols=134 Identities=27% Similarity=0.383 Sum_probs=105.7
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
+.+.+...|..|...+.++..+. +.||++|||.|+|+|.+|..|++.++|.++|+..|+.++.++.|+++++.+++.
T Consensus 15 ~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~- 91 (247)
T PF08704_consen 15 LSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD- 91 (247)
T ss_dssp HTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-
T ss_pred HhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-
Confidence 34556778888999999999998 999999999999999999999999999999999999999999999999998875
Q ss_pred ccCCCCEEEEEcCCC-CCCCC--CCCccEEEECCCCch-hHHHHHhcc-ccCcEEEEEECCCceeE
Q 022372 204 LLKEGSLSVHVGDGR-KGWPE--FAPYDAIHVGAAAPE-IPQALIDQL-KPGGRMVIPVGNIFQDL 264 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~-~~~~~--~~~fD~Ii~~~~~~~-l~~~l~~~L-kpGG~Lvi~v~~~~q~~ 264 (298)
+++++.+.|+. +++.. ...+|+|+.+.+.++ ....+.+.| |+||++++-++.-.|..
T Consensus 92 ----~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~ 153 (247)
T PF08704_consen 92 ----DNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQ 153 (247)
T ss_dssp ----TTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHH
T ss_pred ----CCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHH
Confidence 69999999985 34422 257999999999886 668899999 89999999888755443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=113.54 Aligned_cols=115 Identities=30% Similarity=0.497 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
+..+...+++.+. +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+. .+++++
T Consensus 4 ~~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~ 74 (124)
T TIGR02469 4 KREVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV------SNIVIV 74 (124)
T ss_pred hHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEE
Confidence 4455666777775 6778899999999999999999985 447999999999999999999887543 578888
Q ss_pred EcCCCCCCC-CCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEE
Q 022372 214 VGDGRKGWP-EFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 214 ~gD~~~~~~-~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v 257 (298)
.+|...... ...+||.|++..... .+.+.+.+.|||||++++.+
T Consensus 75 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 75 EGDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 888764322 235899999987654 46789999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=131.34 Aligned_cols=111 Identities=24% Similarity=0.286 Sum_probs=89.3
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
++.+. ++++.+|||+|||+|.++..+++..++.++|+|+|++++|++.|+++...... ....+++++++|.....
T Consensus 66 ~~~~~--~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 66 VSWSG--AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCC
Confidence 34444 67889999999999999999998876667999999999999999877542110 11258999999998766
Q ss_pred CCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v 257 (298)
.+.++||+|++..+++++ .+++.+.|||||++++..
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 566799999998887644 578999999999998854
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=124.18 Aligned_cols=118 Identities=25% Similarity=0.427 Sum_probs=96.3
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
...++.+.+.+.+++.+. +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+. .
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~ 81 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------G 81 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------C
Confidence 445677777777778886 7788999999999999999999884 668999999999999999999887543 5
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC---chhHHHHHhccccCcEEEEEE
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+++++.+|..... .++||+|+++... ..+.+.+.+.|||||++++..
T Consensus 82 ~i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 82 NIDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CeEEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 7899998875433 2579999998764 345678899999999999864
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=122.66 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=89.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|..+..+++.. +..+|+++|.++++++.|+++.+..+. ++++++.+|..+... .++|
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~f 113 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKF 113 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCc
Confidence 35668999999999999999999874 568999999999999999999988664 469999999887554 5789
Q ss_pred cEEEECCC--CchhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|+++.. .+.+.+.+.+.|||||++++..+..
T Consensus 114 DlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 114 DVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred cEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99999764 3467789999999999999987653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=126.76 Aligned_cols=111 Identities=19% Similarity=0.375 Sum_probs=91.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..++..+. ++++.+|||+|||+|..+..+++..++.++|+|+|+++++++.|++++...+. ++++++.+|..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh
Confidence 44566665 77889999999999999999999877778999999999999999999876433 58999999987
Q ss_pred CCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
....+.++||+|+++..+++ +.+++.+.|||||++++..
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 75445579999999877644 4577899999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=119.75 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--CCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~~f 227 (298)
+++.+|||+|||+|.++..+++..++..+++|+|+++++++.|++++++.+. +++++.++|..+ ++.. +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-cccccCCCe
Confidence 4678999999999999999996656778999999999999999999888554 699999999998 4321 689
Q ss_pred cEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|++..++.+ +.+.+.+.||+||++++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999987643 457889999999999986544
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=131.80 Aligned_cols=151 Identities=27% Similarity=0.386 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHh------C-CCCCCCCCCCCCC---------CCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEE
Q 022372 94 ITSKKVSEVMET------I-DRACFVPDGTPPY---------VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALD 157 (298)
Q Consensus 94 i~~~~v~~a~~~------v-~R~~f~p~~~~aY---------~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLD 157 (298)
+.+.+|..+... + .|-...|+|...+ .|..++||.|.|.+ ...+++.|....++|.+|||
T Consensus 93 ~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpT----T~lcL~~Le~~~~~g~~vlD 168 (300)
T COG2264 93 EDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPT----TSLCLEALEKLLKKGKTVLD 168 (300)
T ss_pred cChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChh----HHHHHHHHHHhhcCCCEEEE
Confidence 346677777543 1 2223456652221 25568899998875 56677888777889999999
Q ss_pred EcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-
Q 022372 158 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA- 236 (298)
Q Consensus 158 iG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~- 236 (298)
+|||||.++...+++ |. .+|+|+|++|.+++.|++|...++.. ..++....+.... +..++||+|++|--.
T Consensus 169 vGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~-~~~~~~DvIVANILA~ 240 (300)
T COG2264 169 VGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEV-PENGPFDVIVANILAE 240 (300)
T ss_pred ecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhh-cccCcccEEEehhhHH
Confidence 999999999999998 44 58999999999999999999998763 1223333333232 233699999998743
Q ss_pred --chhHHHHHhccccCcEEEEE
Q 022372 237 --PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 237 --~~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+...+.+.|||||+++++
T Consensus 241 vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEEE
Confidence 35568899999999999984
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=133.94 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=91.9
Q ss_pred HHHHHHHHHHccC-----CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 137 MHATCLQLLEENL-----KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 137 ~~~~~l~~L~~~l-----~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+...+++.+. + +++.+|||||||+|.++..+++..+ .+|+|+|+++.+++.|+++....+.. ++++
T Consensus 101 ~~~~~l~~~~--~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~-----~~v~ 171 (340)
T PLN02244 101 MIEESLAWAG--VPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS-----DKVS 171 (340)
T ss_pred HHHHHHHhcC--CCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceE
Confidence 4444555554 4 6788999999999999999999753 69999999999999999988776543 5799
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
++.+|..+...+.++||+|++....++ +.+++.+.|||||++++..
T Consensus 172 ~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 172 FQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876555689999999888755 4478999999999999854
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=123.40 Aligned_cols=123 Identities=28% Similarity=0.382 Sum_probs=98.7
Q ss_pred CccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 130 ~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
..+++..+.+..+..+. +.++.+|||+|||+|.++..+++..++.++|+++|+++++++.+++++...+.. .+
T Consensus 21 ~~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~ 93 (198)
T PRK00377 21 IPMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NN 93 (198)
T ss_pred CCCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CC
Confidence 34666666666666665 889999999999999999999987666679999999999999999999886532 68
Q ss_pred EEEEEcCCCCCCCC-CCCccEEEECCCC---chhHHHHHhccccCcEEEEEECC
Q 022372 210 LSVHVGDGRKGWPE-FAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 210 v~~~~gD~~~~~~~-~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.++.+|..+..+. .+.||+|+++... ..+.+.+.+.|||||++++....
T Consensus 94 v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 94 IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred eEEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 89999998764332 2579999996653 45678889999999999985543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-14 Score=121.01 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|+++..++.. .+.++|+++|.++++++.++++.++.+. ++++++++|..+. ...++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~-~~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDF-QHEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhc-cccCCccEE
Confidence 4789999999999999999876 4667999999999999999999887553 5799999998774 334789999
Q ss_pred EECCC--CchhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAA--APEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+++.. .+.+.+.+.+.|||||++++..+..
T Consensus 114 ~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 114 TSRALASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred EehhhhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 99862 2345577889999999999987653
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=117.54 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=89.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.+++|+..++. .+++++..|..
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~v~~~~~d~~ 91 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGL------ENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTC------TTEEEEESSTT
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCc------ccccccccccc
Confidence 34556665 226789999999999999999998 4667899999999999999999998775 34999999998
Q ss_pred CCCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECCC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+..+ .++||+|+++++++ .+.+...+.|||||.+++-....
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 8766 47999999998763 33467789999999998866543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-14 Score=107.13 Aligned_cols=89 Identities=26% Similarity=0.417 Sum_probs=74.2
Q ss_pred EEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCC
Q 022372 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 235 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~ 235 (298)
||+|||+|..+..+++. +..+|+++|+++++++.++++... .++.+..+|......++++||+|++...
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCccccccccccccccc
Confidence 89999999999999998 337999999999999999988654 4566999999887767789999999998
Q ss_pred Cchh------HHHHHhccccCcEEEE
Q 022372 236 APEI------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 236 ~~~l------~~~l~~~LkpGG~Lvi 255 (298)
++++ .+++.+.|||||++++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 8654 4789999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=125.55 Aligned_cols=125 Identities=24% Similarity=0.343 Sum_probs=94.5
Q ss_pred CCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 120 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 120 ~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
.|..+++|.|.+.+ ...+++.+.....++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++|...+
T Consensus 132 ldpg~aFgtG~h~t----t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 132 LDPGLAFGTGTHPT----TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred ECCCCcccCCCCHH----HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHc
Confidence 45667788887754 33445555444667899999999999999888875 43 58999999999999999999876
Q ss_pred ccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEE
Q 022372 200 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 200 ~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v 257 (298)
+.. .++.+..++.... ..++||+|+++...+ .+..++.+.|||||+++++-
T Consensus 206 ~~~-----~~~~~~~~~~~~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 206 QVS-----DRLQVKLIYLEQP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred CCC-----cceEEEecccccc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 653 4566666653222 236899999987654 45578899999999999853
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-14 Score=127.24 Aligned_cols=108 Identities=27% Similarity=0.312 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. +++|++|||||||.|.++..+++..| .+|+|+.+|++..+.+++++.+.++. +++++...|.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~-----~~v~v~~~D~ 121 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLE-----DRVEVRLQDY 121 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS-----STEEEEES-G
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEeec
Confidence 444555555 89999999999999999999999964 69999999999999999999987765 6899999997
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
.+.. .+||.|++...++++ ++.+.+.|||||++++..
T Consensus 122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7642 389999999988765 478889999999999743
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=129.30 Aligned_cols=123 Identities=28% Similarity=0.484 Sum_probs=93.8
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
+.|..++||.|.|.+ ...+++++.....+|.+|||+|||||.++...+++ |. .+|+++|+++.+++.|++|+..
T Consensus 133 ~idPg~AFGTG~H~T----T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 133 EIDPGMAFGTGHHPT----TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp EESTTSSS-SSHCHH----HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHH
T ss_pred EECCCCcccCCCCHH----HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHH
Confidence 346678999998865 56677777767889999999999999999999987 54 5899999999999999999999
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
++.. .++.+. . ...... ++||+|++|-... .+...+.+.|||||+++++
T Consensus 207 N~~~-----~~~~v~--~-~~~~~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 207 NGVE-----DRIEVS--L-SEDLVE-GKFDLVVANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp TT-T-----TCEEES--C-TSCTCC-S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cCCC-----eeEEEE--E-eccccc-ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 8875 455543 1 122222 7899999987654 4557788899999999994
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=126.92 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=100.3
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccC--CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l--~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
...+.++.+..++.|.....+...+...+ .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..
T Consensus 89 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 89 GLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred CcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 44566666777777665444444433212 345799999999999999999985 557999999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-------------------------------chhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~L 247 (298)
++.. .+++++.+|..+..+ .++||+|+++++. ..+.+.+.+.|
T Consensus 168 ~~~~-----~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L 241 (284)
T TIGR03533 168 HGLE-----DRVTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHL 241 (284)
T ss_pred cCCC-----CcEEEEECchhhccC-CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 7653 579999999876553 3579999998653 12235567899
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||++++.++..
T Consensus 242 ~~gG~l~~e~g~~ 254 (284)
T TIGR03533 242 NENGVLVVEVGNS 254 (284)
T ss_pred CCCCEEEEEECcC
Confidence 9999999988863
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=125.22 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=84.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++ +++++.+|..
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------------GVDARTGDVR 82 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh
Confidence 44566665 6778999999999999999999985 567999999999999998642 4678889987
Q ss_pred CCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~ 258 (298)
... ..++||+|+++.+++++ .+++.+.|||||++++.++
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 553 34789999999987654 3678899999999999764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=116.86 Aligned_cols=123 Identities=25% Similarity=0.381 Sum_probs=96.7
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~ 207 (298)
.+..++++.+...++..+. ++++.+|||+|||+|.++..+++. .+.++|+++|+++++++.+++|+++.+.
T Consensus 19 ~~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~------ 89 (196)
T PRK07402 19 PGIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV------ 89 (196)
T ss_pred CCCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC------
Confidence 3455677777777777775 778899999999999999999877 4558999999999999999999987553
Q ss_pred CCEEEEEcCCCCCCCC-CCCccEEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 208 GSLSVHVGDGRKGWPE-FAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~-~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++++.+|..+.+.. ...+|.++..... +.+.+.+.+.|||||++++...+
T Consensus 90 ~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 90 KNVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 5799999987653221 1346787775432 46778999999999999997654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-14 Score=126.69 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=100.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
-+|.+|||||||.|.++..+|+.. ..|+|+|.+++.++.|+.+..+.++ ++++.+....+.....++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccE
Confidence 378999999999999999999984 7999999999999999999887654 355666666555444479999
Q ss_pred EEECCCCchhH------HHHHhccccCcEEEEEECCCc----------------------eeE-------EEEEEcCCCC
Q 022372 230 IHVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF----------------------QDL-------KVVDKNQDGS 274 (298)
Q Consensus 230 Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~~~~----------------------q~~-------~~~~~~~~g~ 274 (298)
|+|..+++|++ +++.+++||||.++++..+.. -.. .++....+..
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999998876 568899999999999664421 000 1111122335
Q ss_pred eEEEEeeeEEEeecccc
Q 022372 275 LSIWSETSVRYVPLTSR 291 (298)
Q Consensus 275 ~~~~~l~~v~fvPl~~~ 291 (298)
+....+.++.|-|++..
T Consensus 208 ~~~~~~~g~~y~p~~~~ 224 (243)
T COG2227 208 LKIIDRKGLTYNPLTNS 224 (243)
T ss_pred ceEEeecceEeccccce
Confidence 77778889999998765
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=122.14 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=85.5
Q ss_pred HHccCCCCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 145 LEENLKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 145 L~~~l~~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
+...++++.+|||+|||+|..+..+++.+ .+..+++++|+++.+++.|++++...+.. .+++++.+|..+...
T Consensus 50 ~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-----~~v~~~~~d~~~~~~- 123 (247)
T PRK15451 50 AERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIAI- 123 (247)
T ss_pred HHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEeCChhhCCC-
Confidence 33346788999999999999999998853 35689999999999999999999875542 579999999876543
Q ss_pred CCCccEEEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 224 FAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+|+|+++.+++ .+.+++.+.|||||.+++.
T Consensus 124 -~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 -ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3599999887764 3457899999999999985
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=123.64 Aligned_cols=102 Identities=30% Similarity=0.463 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++....+. .+++++.+|........++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 77899999999999999988888877777999999999999999999876543 588999999876544446899
Q ss_pred EEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+|+++.+++ .+.+++++.|||||++++.
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999988653 4568899999999999984
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=123.02 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=87.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. +.++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++. +++.++.+|.
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~ 85 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------PDCQFVEADI 85 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECch
Confidence 344555554 6778999999999999999999885 5579999999999999998763 4678899998
Q ss_pred CCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....+ .++||+|+++.++++ +.+++.+.|||||.+++.++.
T Consensus 86 ~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 86 ASWQP-PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hccCC-CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 75443 368999999998754 347889999999999997643
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=118.17 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|..+..|++.. .+|+|+|+++++++.++++....++ .++++..+|..
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLN 88 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChh
Confidence 34455555 5567899999999999999999873 6999999999999999998877543 46888888886
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
....+ ++||+|++..+++ .+.+++.+.|||||.+++
T Consensus 89 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 NLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 54333 6799999988763 344788899999999654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=122.43 Aligned_cols=133 Identities=27% Similarity=0.265 Sum_probs=104.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ++||++|||||||.|.++.++|+..+ .+|+|+++|++..+.+++++...++. .+++++..|..
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~r 132 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYR 132 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecccc
Confidence 34555565 99999999999999999999999964 79999999999999999999997764 68999999887
Q ss_pred CCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEEC-CCceeEEEEEEcCCCCeEEEEeeeEEEeec
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~-~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl 288 (298)
+.. ++||.|++...++++ ++.+.+.|+|||++++..- ...+... ....|..+.+||-.+.|-
T Consensus 133 d~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-----~~~~~i~~yiFPgG~lPs 203 (283)
T COG2230 133 DFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-----RFPDFIDKYIFPGGELPS 203 (283)
T ss_pred ccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-----cchHHHHHhCCCCCcCCC
Confidence 654 349999999988654 4778899999999998543 2322221 233466667777777773
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-14 Score=121.19 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=89.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
++..+. +.+..+|.|+|||+|..|..|++++ |...++|+|.|++|++.|++++ ++++|..+|....
T Consensus 22 Lla~Vp--~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w 87 (257)
T COG4106 22 LLARVP--LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTW 87 (257)
T ss_pred HHhhCC--ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhc
Confidence 344444 5566899999999999999999997 6789999999999999998765 7889999998775
Q ss_pred CCCCCCccEEEECCCCchhH------HHHHhccccCcEEEEEECCC
Q 022372 221 WPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~~~ 260 (298)
-++ .++|+++++++++.++ ..+..+|.|||+|.+.+++.
T Consensus 88 ~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 KPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 444 7899999999987554 67889999999999999875
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=122.30 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++++.++. ++++++.+|+
T Consensus 56 ~g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINFIQSDA 129 (234)
T ss_pred HHHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEccH
Confidence 455555554 3556789999999999999999998777789999999999999999999998764 6899999998
Q ss_pred CCCCC------CCCCccEEEECCCC---chhHHHHHhccccCcEEEE
Q 022372 218 RKGWP------EFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~------~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi 255 (298)
.+..+ +.++||.|++++.. .++.+.+.+.|||||.+++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76432 13689999999764 3556788999999999886
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=128.68 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||||||+|.++..+++. + .+|+|+|.++++++.|+++....+.. .+++++++|+.+.....++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~~~~~-----~~i~~~~~dae~l~~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADMDPVT-----STIEYLCTTAEKLADEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHhcCcc-----cceeEEecCHHHhhhccCCCCE
Confidence 46779999999999999999875 2 69999999999999999886543321 5789999998665444578999
Q ss_pred EEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|++..+++++ .+++.++|||||.+++...+
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999988765 47889999999999998654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=120.19 Aligned_cols=117 Identities=31% Similarity=0.491 Sum_probs=87.4
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhc
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~ 200 (298)
|..+++|.|.+.+ ...+++.+.....++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++|+..++
T Consensus 93 ~p~~afgtg~h~t----t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~ 166 (250)
T PRK00517 93 DPGMAFGTGTHPT----TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNG 166 (250)
T ss_pred CCCCccCCCCCHH----HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcC
Confidence 4456777776654 33455555444678899999999999999887775 44 479999999999999999998765
Q ss_pred cCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 201 ~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
.. .++.+..++ .+||+|+++...+ .+.+++.+.|||||++++.
T Consensus 167 ~~-----~~~~~~~~~--------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 167 VE-----LNVYLPQGD--------LKADVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CC-----ceEEEccCC--------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 42 344443332 2799999987644 4557889999999999996
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-13 Score=122.79 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=100.2
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccCC--CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENLK--PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l~--~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
...+.++.+..++.|.+...+...+...++ +..+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..
T Consensus 101 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 101 GLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred CcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 445666667777777655444444332222 23689999999999999999984 567999999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-------------------------------chhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~L 247 (298)
.+.. ++++++++|..+..+. ++||+|+++++. ..+.+.+.+.|
T Consensus 180 ~~l~-----~~i~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L 253 (307)
T PRK11805 180 HGLE-----DRVTLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYL 253 (307)
T ss_pred hCCC-----CcEEEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhc
Confidence 6653 5799999998765543 589999998643 12235667899
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||++++.++..
T Consensus 254 ~pgG~l~~E~g~~ 266 (307)
T PRK11805 254 TEDGVLVVEVGNS 266 (307)
T ss_pred CCCCEEEEEECcC
Confidence 9999999988865
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=121.81 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD 228 (298)
.++.+|||+|||+|..+..+++.. .+|+++|+++++++.|+++....+.. ++++++++|..+.. ...++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~-----~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVS-----DNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cceEEEEcCHHHHhhhcCCCCC
Confidence 456799999999999999999873 68999999999999999998876543 67899999886532 2336899
Q ss_pred EEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++..+++++ .+++.+.|||||++++.+.+
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999887543 47889999999999986554
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-13 Score=120.46 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+++|.+|||+|||+|..+..+++.+++.+.|+++|+++.+++.+++++++.+. .+++++.+|........+.||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 78899999999999999999999887668999999999999999999988654 579999999875433335799
Q ss_pred EEEECCCCc----------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++++.. ++.+.+.+.|||||+|+.+...
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999987632 2446677899999999997643
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=116.57 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=87.1
Q ss_pred HHHHHHHHHH-HccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 136 HMHATCLQLL-EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 136 ~~~~~~l~~L-~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
...+.++..+ ...+++|.+|||+|||+|..+..+++.++ .++|+++|+++++++.+.++.+.. .|+.++.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~ 126 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIPIL 126 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEE
Confidence 4445555533 11378999999999999999999999875 579999999999999887776542 5789999
Q ss_pred cCCCCCC---CCCCCccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 215 GDGRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 215 gD~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|..... .-.++||+|+++...++ +.+++.+.|||||++++.+.
T Consensus 127 ~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 127 ADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9986421 11256999998766432 35788999999999999654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-13 Score=120.99 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=86.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. ++++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|+++... .+++.+..+|.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~ 108 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDI 108 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCc
Confidence 445666665 78999999999999999999987642 6999999999999999987643 15799999998
Q ss_pred CCCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v 257 (298)
.....+.++||+|++...+. .+.+++.+.|||||++++..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 76544457899999966543 34478899999999999854
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=115.77 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=93.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD 216 (298)
.+.++..|. ...+..+|||+|++.||.+..||..++.+++++++|+++++.+.|++++++.++. +++.++. +|
T Consensus 47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-----~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-----DRIELLLGGD 120 (219)
T ss_pred HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-----ceEEEEecCc
Confidence 455555554 3667789999999999999999999865789999999999999999999998876 6688888 57
Q ss_pred CCCCCCC--CCCccEEEECCCCchh---HHHHHhccccCcEEEE
Q 022372 217 GRKGWPE--FAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVI 255 (298)
Q Consensus 217 ~~~~~~~--~~~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi 255 (298)
..+.... .++||+||.++..... .+.+.++|+|||.+++
T Consensus 121 al~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 7764432 4799999999987654 4778899999999997
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.3e-13 Score=114.64 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=79.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|+.+..+++.. .+|+|+|+++.+++.++++....+. ++.+...|..
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN 87 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence 34455554 4456799999999999999999863 6999999999999999988776442 3666777765
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
....+ ++||+|++...++ .+.+++.+.|||||++++
T Consensus 88 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 88 AAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred hcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 43333 5799999987764 344788899999999655
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-13 Score=107.11 Aligned_cols=100 Identities=27% Similarity=0.309 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCccE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~fD~ 229 (298)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+.. .+++++++|..+.. ...++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD-----DRVEVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT-----TTEEEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC-----ceEEEEECchhhchhhccCceeEE
Confidence 5689999999999999999985 479999999999999999999886653 68999999987643 34479999
Q ss_pred EEECCCCc--------------hhHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAP--------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+++.+.. .+.+.+.+.|||||++++.++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999863 234778899999999998765
|
... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=123.09 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=88.4
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ...+.+|||+|||+|.++..+++. .|..+|+++|.++.+++.|++|++.++.. ...++++..+|...
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~ 292 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS 292 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEccccc
Confidence 3555554 233469999999999999999998 47789999999999999999999876431 12478999999876
Q ss_pred CCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+ ++||+|+++++++ .+.+.+.+.|||||.+++...
T Consensus 293 ~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 293 GVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 5533 5899999998864 244677899999999999653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=115.23 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
+.++.+|||+|||+|..+..+++.+ .++.+++|+|+++++++.|++++...+.. .+++++.+|...... ..+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~ 123 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCNDIRHVEI--KNA 123 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECChhhCCC--CCC
Confidence 5678899999999999999999875 25689999999999999999998764432 578999999876543 358
Q ss_pred cEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 228 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 228 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
|+|++..++++ +.+++.+.|||||++++.-
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99998887654 3478899999999999863
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-13 Score=118.07 Aligned_cols=113 Identities=24% Similarity=0.353 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
..+.++..+.. .....+||||||++||.+..+|+.++++++++++|.+++..+.|++++++.++. ++++++.+|
T Consensus 32 ~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-----~~I~~~~gd 105 (205)
T PF01596_consen 32 ETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-----DRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-----GGEEEEES-
T ss_pred HHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-----CcEEEEEec
Confidence 35666666652 445579999999999999999998877899999999999999999999998765 789999999
Q ss_pred CCCCCC----C--CCCccEEEECCCCchhH---HHHHhccccCcEEEE
Q 022372 217 GRKGWP----E--FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 217 ~~~~~~----~--~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi 255 (298)
+.+..+ . .++||.||.++...++. +.+.+.|+|||.+++
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred cHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEE
Confidence 875321 1 25899999999987654 677899999999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=119.49 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=93.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...+..+|||+|+++||.+..+++.++++++++++|.+++..+.|++++++.++. ++++++.||+
T Consensus 106 ~g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~li~GdA 179 (278)
T PLN02476 106 QAQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVNVKHGLA 179 (278)
T ss_pred HHHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 555566654 2556789999999999999999998877789999999999999999999998764 6899999998
Q ss_pred CCCCCC------CCCccEEEECCCCch---hHHHHHhccccCcEEEE
Q 022372 218 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~------~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
.+.++. .++||.||.++.... +.+.+.+.|+|||.+++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 764321 258999999998754 44788899999999986
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=114.86 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCCC--CCCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGW--PEFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~~--~~~~~ 226 (298)
.++.+|||+|||+|..+..+++.. +..+|+++|+++++++.|++++...+. +++.++++|. .... .+.++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccc
Confidence 367899999999999999999885 557999999999999999999877543 6899999998 3321 23468
Q ss_pred ccEEEECCCC--------------chhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||+|+++.+. +.+.+++.+.|||||++++...+.
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 9999987542 346789999999999999976553
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=111.52 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++.. + +|+++|+++++++.+++++..++ .+++++.+|..+.. . ++||
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~-~-~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV-R-GKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc-C-Cccc
Confidence 4456799999999999999999874 3 89999999999999999987643 35788899986643 2 5899
Q ss_pred EEEECCCCc---------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++.+.. .+.+++.+.|||||++++....
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 999997652 2356778999999999986543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=117.01 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+++++++.|+++.. ...++.+|.
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~ 94 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA-----------ADHYLAGDI 94 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCc
Confidence 344555554 3456799999999999999988752 699999999999999987642 245788888
Q ss_pred CCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......++||+|+++.++++ +..++.+.|||||.+++...
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 765545578999999987643 45788999999999999764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=112.34 Aligned_cols=111 Identities=25% Similarity=0.395 Sum_probs=89.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.++++.... ..++.+..+|..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~ 79 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccc
Confidence 34555555 788899999999999999999998766689999999999999998873221 257899999877
Q ss_pred CCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......++||+|++...+++ +.+++.+.|||||.+++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 64444478999999877643 55889999999999998653
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=116.45 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~--~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++.+|||+|||+|+++..+++..+.. ..++|+|+++.+++.|+++. +++.+..+|..+.+...++|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCce
Confidence 345789999999999999999875322 37999999999999997653 56788999988765556799
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++... +...+++.+.|||||++++..+..
T Consensus 153 D~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 153 DAIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eEEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 99998765 456689999999999999976653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=116.75 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=87.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCc-HHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-hccCCccCCCCEEEEEc
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG-~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~-~~~~~~l~~~~v~~~~g 215 (298)
...++..+. ..++.+|+|||||.| +.+..+++...++++++++|+++++++.|++.+.. .++. ++++|..+
T Consensus 112 E~~~L~~~~--~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-----~rV~F~~~ 184 (296)
T PLN03075 112 EFDLLSQHV--NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-----KRMFFHTA 184 (296)
T ss_pred HHHHHHHhh--cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-----CCcEEEEC
Confidence 344455554 336789999999976 45566665556888999999999999999999864 4443 68999999
Q ss_pred CCCCCCCCCCCccEEEECCCC-------chhHHHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAA-------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~-------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|..+.....+.||+|++.+.. .++.+.+.+.|+|||.+++-.+
T Consensus 185 Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 185 DVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred chhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 998765445789999999421 2466899999999999999653
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=123.56 Aligned_cols=109 Identities=26% Similarity=0.333 Sum_probs=89.1
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. +++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|+.+.+. .+++++.+|+....
T Consensus 245 ~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~ 316 (434)
T PRK14901 245 APLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLL 316 (434)
T ss_pred HHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhcc
Confidence 34454 77899999999999999999999876668999999999999999999988664 57999999987643
Q ss_pred ----CCCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 222 ----PEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++||.|+++++. .++.+++.+.|||||+|+....
T Consensus 317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 317 ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 223689999998753 1345678899999999997653
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=112.67 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.-.++||+|||.|.+|..||.++ .+++++|+++.+++.|++++... ++|+++++|....+++ ++||+|
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--------~~V~~~~~dvp~~~P~-~~FDLI 110 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--------PHVEWIQADVPEFWPE-GRFDLI 110 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--------CCeEEEECcCCCCCCC-CCeeEE
Confidence 33689999999999999999997 69999999999999999998642 6899999999887766 899999
Q ss_pred EECCCCc---------hhHHHHHhccccCcEEEEEE
Q 022372 231 HVGAAAP---------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 231 i~~~~~~---------~l~~~l~~~LkpGG~Lvi~v 257 (298)
++...+. .+.+.+.+.|+|||.||+-.
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9998752 23466778999999999843
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=112.58 Aligned_cols=101 Identities=23% Similarity=0.355 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+. .+++++.+|..+..+ .++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPLP-GGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccCc-CCceeEE
Confidence 44699999999999999999985 557999999999999999999887554 579999999877543 4789999
Q ss_pred EECCCCc--------------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~~--------------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++.+.. .+.+.+.+.|+|||++++..+.
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 9987532 2335777899999999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=125.62 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=108.9
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..++. .+++++.+|
T Consensus 285 l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d 353 (443)
T PRK13168 285 MVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeC
Confidence 3444555554 5678899999999999999999885 6899999999999999999987654 579999999
Q ss_pred CCCCCC----CCCCccEEEECCCCch---hHHHHHhccccCcEEEEEECCCce--eEEEEEEcCCCCeEEEEeeeEEEee
Q 022372 217 GRKGWP----EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGNIFQ--DLKVVDKNQDGSLSIWSETSVRYVP 287 (298)
Q Consensus 217 ~~~~~~----~~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~v~~~~q--~~~~~~~~~~g~~~~~~l~~v~fvP 287 (298)
+.+... ..++||+|+++++... +.+.+. .++|++.++++++.... ++..+. ++.++.+.+.++.++|
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~-~~~~~~ivyvSCnp~tlaRDl~~L~---~~gY~l~~i~~~DmFP 429 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALA-KLGPKRIVYVSCNPATLARDAGVLV---EAGYRLKRAGMLDMFP 429 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHH-hcCCCeEEEEEeChHHhhccHHHHh---hCCcEEEEEEEeccCC
Confidence 875432 2357999999988653 333333 36899999998876432 233332 3349999999999999
Q ss_pred cccchh
Q 022372 288 LTSRDA 293 (298)
Q Consensus 288 l~~~~~ 293 (298)
-|...+
T Consensus 430 ~T~HvE 435 (443)
T PRK13168 430 HTGHVE 435 (443)
T ss_pred CCCcEE
Confidence 998876
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=125.58 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=86.7
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ++++.+|||+|||+|..+..+++..+ .+|+|+|+++++++.|+++..... .++++..+|...
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~-------~~v~~~~~d~~~ 325 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK-------CSVEFEVADCTK 325 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC-------CceEEEEcCccc
Confidence 3455554 57788999999999999999998753 689999999999999998764311 478999999877
Q ss_pred CCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
...+.++||+|++..++.+ +.+++.+.|||||++++..
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 5544478999999988754 4578999999999999864
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=118.02 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=100.1
Q ss_pred CCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 022372 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196 (298)
Q Consensus 117 ~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~ 196 (298)
..|.+..+.+..+..+.+|..... ++.+...++++.+|||+|||+|.++..+++.. +..+|+++|+|+++++.|++|+
T Consensus 218 ~~F~G~~f~V~p~vLIPRpeTE~L-Ve~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPRPETEHL-VEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNA 295 (423)
T ss_pred eeecCcEEEeCCCccCCCccHHHH-HHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence 444555666777777777764443 33332235567799999999999999999874 5579999999999999999998
Q ss_pred HHhccCCccCCCCEEEEEcCCCCCC-CCCCCccEEEECCCCc-------------------------------hhHHHHH
Q 022372 197 EKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAP-------------------------------EIPQALI 244 (298)
Q Consensus 197 ~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD~Ii~~~~~~-------------------------------~l~~~l~ 244 (298)
...+ .+++++++|..+.. +..++||+|+++++.- .+.+.+.
T Consensus 296 ~~~g-------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 296 ADLG-------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred HHcC-------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 7643 37899999986532 2335799999998641 1224455
Q ss_pred hccccCcEEEEEECCC
Q 022372 245 DQLKPGGRMVIPVGNI 260 (298)
Q Consensus 245 ~~LkpGG~Lvi~v~~~ 260 (298)
+.|+|||.+++.++..
T Consensus 369 ~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 369 DRLAEGGFLLLEHGFD 384 (423)
T ss_pred HhcCCCcEEEEEECcc
Confidence 7899999999988763
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-12 Score=116.07 Aligned_cols=133 Identities=21% Similarity=0.297 Sum_probs=96.5
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHcc--CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~--l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
+..+.+..+..+..|.....+...+... ..++.+|||+|||+|.++..++... +..+|+++|+++++++.|++|+..
T Consensus 82 g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~ 160 (284)
T TIGR00536 82 GLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEK 160 (284)
T ss_pred CeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 4445555566666555333322222211 1223699999999999999999985 557999999999999999999987
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-------------------------------hhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-------------------------------~l~~~l~~~L 247 (298)
.+.. .+++++.+|..+..+. .+||+|+++++.. .+.+.+.+.|
T Consensus 161 ~~~~-----~~v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 161 NQLE-----HRVEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred cCCC-----CcEEEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 6542 4699999998775543 4799999986531 1235567799
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||++++.++..
T Consensus 235 ~~gG~l~~e~g~~ 247 (284)
T TIGR00536 235 KPNGFLVCEIGNW 247 (284)
T ss_pred cCCCEEEEEECcc
Confidence 9999999999864
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=118.71 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=80.9
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
++..+. ..+|.+|||||||+|+.+..+++. ++ ..|+|+|.++.++..++......+. ..+++++.+|..+.
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~l 184 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQL 184 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHC
Confidence 344443 346789999999999999999987 44 4799999999998765543322111 15799999988765
Q ss_pred CCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~ 256 (298)
.. .++||+|++..++++ +.+++.+.|||||.+++.
T Consensus 185 p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 185 PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 44 578999999988754 447899999999999985
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-13 Score=102.98 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=69.9
Q ss_pred EEEEcCCCcHHHHHHHHHc--CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 155 ALDIGSGTGYLTACFALMV--GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~--g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
|||+|||+|..+..+++.+ ++..+++++|+++++++.++++....+ .+++++++|..+.....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999986 344799999999999999999987633 3789999999875445579999999
Q ss_pred C-CCCc--------hhHHHHHhccccCc
Q 022372 233 G-AAAP--------EIPQALIDQLKPGG 251 (298)
Q Consensus 233 ~-~~~~--------~l~~~l~~~LkpGG 251 (298)
. .++. .+.+++.+.|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4 4353 34478889999998
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=111.08 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCCCc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~~f 227 (298)
.+.++||+|||+|.++..+++.. |+..++|+|+++++++.|++++...++ .|++++++|+.+.+ .+.+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCce
Confidence 45699999999999999999984 678999999999999999999877544 58999999987532 333589
Q ss_pred cEEEECCCCc--------------hhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|.|+++.+.+ .+.+.+.+.|||||.+++.....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9999986532 36788999999999999976653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=119.93 Aligned_cols=103 Identities=26% Similarity=0.257 Sum_probs=82.6
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ++++.+|||+|||+|.++..+++..+ .+|+|+|+++++++.|+++... .++++..+|...
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~ 224 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRD 224 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhh
Confidence 3445554 78999999999999999999998753 5899999999999999988742 247788888754
Q ss_pred CCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. .++||.|++...+++ +.+.+.+.|||||++++...
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 368999998877654 34778899999999998653
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-12 Score=121.78 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
+++|.+|||+|||+|..|..+++..++.++|+++|+++.+++.+++++++.+. .++++..+|..... ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 78899999999999999999999887778999999999999999999988654 57899999987542 123679
Q ss_pred cEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|+++++.. ++..++.+.|||||+++++...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999988751 1235678899999999997754
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=109.50 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++|+...+ .++.++.+|..+..+ .++||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~~~-~~~fD 103 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARAVE-FRPFD 103 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhhcc-CCCee
Confidence 677899999999999999999886 32 589999999999999999987654 257888888876443 36899
Q ss_pred EEEECCCCc---------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++.+.. .+.+++.+.|||||++++...+
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 999986532 2346678999999999985544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-12 Score=121.72 Aligned_cols=110 Identities=24% Similarity=0.311 Sum_probs=89.6
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
....+. +.+|.+|||+|||+|+.+..+++..+..++|+++|+++.+++.+++++++.+. .+++++.+|+...
T Consensus 242 ~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~ 313 (445)
T PRK14904 242 ACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSF 313 (445)
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccc
Confidence 334444 67889999999999999999998876667999999999999999999988654 5799999998765
Q ss_pred CCCCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+ .++||+|+++++. ..+..++.+.|||||++++....
T Consensus 314 ~~-~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 314 SP-EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cc-CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 43 3689999987653 12456778899999999997743
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=115.57 Aligned_cols=116 Identities=23% Similarity=0.250 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|.+...++.... .+++.+|||+|||+|.++..++.. + .+++|+|+++.+++.|++|++..+. .++++.
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~-~--~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~ 235 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM-G--AKVIGCDIDWKMVAGARINLEHYGI------EDFFVK 235 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh-C--CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEE
Confidence 4555566666554 788999999999999998887765 3 6899999999999999999988665 358899
Q ss_pred EcCCCCCCCCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+|..+.....++||+|+++++. ..+.+++.+.|||||++++.+++.
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99998755445789999998753 234467889999999999988764
|
This family is found exclusively in the Archaea. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-12 Score=111.04 Aligned_cols=111 Identities=21% Similarity=0.245 Sum_probs=92.7
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~-----~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
....|. ..+++++||+++|||.++..+.+.++.. ++|+..|++++|++.++++..+.++. ...++.++.+
T Consensus 92 ~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~~ 166 (296)
T KOG1540|consen 92 FVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVEG 166 (296)
T ss_pred hhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEeC
Confidence 455554 6778999999999999999999987553 79999999999999999998775442 2345999999
Q ss_pred CCCCCCCCCCCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
|+.+.+.++++||.......++ ...++++|+|||||++.+-
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999888889999999988874 3458999999999999873
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=116.01 Aligned_cols=99 Identities=25% Similarity=0.399 Sum_probs=77.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC---CEEEEEcCCCCCCCCCCCcc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG---SLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~---~v~~~~gD~~~~~~~~~~fD 228 (298)
|++|||+|||+|.++..||+.. ..|+|+|.++++++.|+++...... +... ++++...++... .+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~---~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPV---LEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCch---hccccceeeehhhcchhhc---ccccc
Confidence 5889999999999999999985 7999999999999999998433322 2211 355555555432 24599
Q ss_pred EEEECCCCchh--H----HHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI--P----QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l--~----~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+|..+++|+ + +.+.+.|||||+|+++.-+
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99999999887 3 5677899999999997644
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-12 Score=116.40 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+|++|||+|||+|+++..++.. ++ ..|+|+|.++.++..++..-..... ..++.+...+..+..+. .+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCHHHCCCC-CCcC
Confidence 466889999999999999888876 44 4899999999998775432222111 14677877776554333 5899
Q ss_pred EEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
+|++..++.+ ..+++.+.|||||.|++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999998764 4478999999999999853
|
Known examples to date are restricted to the proteobacteria. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=112.54 Aligned_cols=109 Identities=26% Similarity=0.288 Sum_probs=89.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ...+.+|||+|||.|.+++.+++. .|..+++-+|++..+++.|++|+..++. .+..+..+|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~ 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGV------ENTEVWASNLY 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCC------CccEEEEeccc
Confidence 34566665 445569999999999999999999 4678999999999999999999998765 34467778877
Q ss_pred CCCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+...+ +||.|++|++++ ++.++..+.|++||.|.+...
T Consensus 219 ~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 219 EPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 66554 899999999984 455777899999999999554
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=111.40 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=81.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
++|||+|||+|..+..+++.. +..+|+|+|+++++++.+++++...++. +++++..+|......+ ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~-----~~i~~~~~d~~~~~~~-~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ-----GRIRIFYRDSAKDPFP-DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEecccccCCCC-CCCCEeeh
Confidence 379999999999999999885 4478999999999999999998876654 6889999998654333 58999998
Q ss_pred CCCCc------hhHHHHHhccccCcEEEEEE
Q 022372 233 GAAAP------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 233 ~~~~~------~l~~~l~~~LkpGG~Lvi~v 257 (298)
...++ .+.+++.+.|||||++++..
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 77654 34578999999999999854
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=115.89 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=85.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. .....+|||+|||+|.++..+++. .+..+|+++|+++.+++.|+++++.++. ..+++.+|..
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~ 255 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF 255 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence 34455554 233458999999999999999998 4667999999999999999999988653 2466777876
Q ss_pred CCCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
... .++||+|+++.+++ .+.+++.+.|||||.+++..+.
T Consensus 256 ~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 256 SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 543 36899999998874 3346778899999999985544
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=109.45 Aligned_cols=110 Identities=26% Similarity=0.309 Sum_probs=86.2
Q ss_pred HHHHHHHHHccC-CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENL-KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l-~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++++++.++++.. +++.++.+|
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d 88 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------ENVQFICGD 88 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecc
Confidence 444555554221 345799999999999999999984 66789999999999999887642 367889999
Q ss_pred CCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
........++||+|++..++++ +.+++.+.|||||.+++...
T Consensus 89 ~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8876545578999999987653 45788999999999998654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=108.31 Aligned_cols=112 Identities=25% Similarity=0.426 Sum_probs=88.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+.. .++.++.+|.
T Consensus 40 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 112 (239)
T PRK00216 40 RRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-----GNVEFVQGDA 112 (239)
T ss_pred HHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-----cCeEEEeccc
Confidence 344555554 557789999999999999999998643679999999999999999987654322 5788999998
Q ss_pred CCCCCCCCCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+.....++||+|++...++ .+.+++.+.|+|||++++.
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 77554457899999876653 3457889999999999874
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=121.49 Aligned_cols=136 Identities=12% Similarity=0.201 Sum_probs=102.2
Q ss_pred CCCCCCCccccCCCccChHHHHHHHHHHHHcc-------------------------CCCCCEEEEEcCCCcHHHHHHHH
Q 022372 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEEN-------------------------LKPGMHALDIGSGTGYLTACFAL 171 (298)
Q Consensus 117 ~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~-------------------------l~~g~~VLDiG~GsG~~t~~La~ 171 (298)
..|....+.++.+..|++|.....+-..+... ..++.+|||+|||+|.++..+++
T Consensus 79 ~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHH
Confidence 45556778888899999988554433222210 11346899999999999999998
Q ss_pred HcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc--------------
Q 022372 172 MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------- 237 (298)
Q Consensus 172 ~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-------------- 237 (298)
.. +..+|+++|+|+.+++.|++|+..+++. ++++++.+|...... .++||+|+++++.-
T Consensus 159 ~~-p~~~v~avDis~~al~~A~~N~~~~~l~-----~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 159 EL-PNANVIATDISLDAIEVAKSNAIKYEVT-----DRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred HC-CCCeEEEEECCHHHHHHHHHHHHHcCCc-----cceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhhc
Confidence 75 5579999999999999999999876643 578999999866443 35899999987531
Q ss_pred ------------------hhHHHHHhccccCcEEEEEECC
Q 022372 238 ------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 238 ------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+.+.+.|+|||.+++.++.
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 1224566799999999998865
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=110.41 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=93.4
Q ss_pred CCCccccCCCccChHHHH---HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMH---ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~---~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~ 197 (298)
+..+..+.+..++.|... ..++..+. ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.
T Consensus 77 ~~~~~~~~~~lipr~~te~l~~~~~~~~~--~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 77 GLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CcEEEECCCceeCCCCcHHHHHHHHHhcc--ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 344445555555554422 22222222 4567899999999999999999985 56899999999999999999987
Q ss_pred HhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc--------------------------------hhHHHHHh
Q 022372 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP--------------------------------EIPQALID 245 (298)
Q Consensus 198 ~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~--------------------------------~l~~~l~~ 245 (298)
... ..++.++.+|...... .++||+|+++.+.. .+.+++.+
T Consensus 154 -~~~-----~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~ 226 (275)
T PRK09328 154 -HGL-----GARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR 226 (275)
T ss_pred -hCC-----CCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH
Confidence 221 2689999999876544 36899999986541 12245558
Q ss_pred ccccCcEEEEEECC
Q 022372 246 QLKPGGRMVIPVGN 259 (298)
Q Consensus 246 ~LkpGG~Lvi~v~~ 259 (298)
.|||||++++.++.
T Consensus 227 ~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 227 YLKPGGWLLLEIGY 240 (275)
T ss_pred hcccCCEEEEEECc
Confidence 99999999998765
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=114.29 Aligned_cols=94 Identities=22% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.++++....++ ++++...|...... .++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~~~-~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSASI-QEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcccc-cCCccEE
Confidence 3459999999999999999986 3 6999999999999999998876432 67888888765433 4789999
Q ss_pred EECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 231 HVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 231 i~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
++..+++ .+.+++.+.|||||++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9988764 245788899999999666
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.5e-11 Score=114.87 Aligned_cols=108 Identities=28% Similarity=0.357 Sum_probs=86.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+...+. +.+|.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++.+.+. +++++.+|+...
T Consensus 236 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~ 305 (427)
T PRK10901 236 AATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDP 305 (427)
T ss_pred HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccc
Confidence 344554 7789999999999999999999986 337999999999999999999988653 367899998753
Q ss_pred C--CCCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 221 W--PEFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~--~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. ...++||.|+++++.. .+.+.+.+.|||||++++...
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 2 2236799999887642 244677889999999998664
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.8e-12 Score=111.92 Aligned_cols=112 Identities=23% Similarity=0.295 Sum_probs=92.7
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+.. ..+..+|||||+++||.+..+|+.++++++++++|.+++..+.|++++++.++. ++|+++.|++
T Consensus 67 ~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I~~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeccH
Confidence 4555666542 445579999999999999999998877899999999999999999999998765 7999999998
Q ss_pred CCCCCC-------CCCccEEEECCCCchhH---HHHHhccccCcEEEE
Q 022372 218 RKGWPE-------FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~-------~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi 255 (298)
.+..+. .++||.||.++.....+ +.+.+.|+|||.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 764322 26899999999876544 677899999999886
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-11 Score=101.38 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=86.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|+.+..+++. + .+++++|+++++++.+++++..++.. ..++.++.+|..
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~ 83 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLF 83 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccc
Confidence 33445554 467889999999999999999987 3 79999999999999999998776542 112888899987
Q ss_pred CCCCCCCCccEEEECCCCc---------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+...+ ..||+|+++.+.. .+.+++.+.|||||.+++.++.
T Consensus 84 ~~~~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 84 EPFRG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ccccc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 76544 4899999886542 2457788999999999887654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=114.28 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~ 229 (298)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++++.++. ++++++.+|..+... ..+.||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeE
Confidence 56899999999999999999863 6899999999999999999988654 589999999875432 2247999
Q ss_pred EEECCCCchhHH---HHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 230 IHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 230 Ii~~~~~~~l~~---~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
|+++++-..+.. +....++|++.++++.+... ..+..+ +.++.+.+.++..+|.|...+
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmFP~T~HvE 307 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMFPHTAHYE 307 (315)
T ss_pred EEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccCCCCCeEE
Confidence 999988654433 33445678888888777643 223333 359999999999999998876
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=115.42 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|..+..+++.. +..+|+++|.++++++.|+++... .+++++.+|..+...+.++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeE
Confidence 467899999999999999998876 336899999999999999987532 4678899998765445578999
Q ss_pred EEECCCCch------hHHHHHhccccCcEEEEE
Q 022372 230 IHVGAAAPE------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 230 Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~ 256 (298)
|++..++++ +.+++.+.|||||++++.
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999887643 457899999999999874
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=118.44 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=87.6
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. ++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|+.+.+. .+++++.+|+....
T Consensus 243 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~ 314 (444)
T PRK14902 243 APALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVH 314 (444)
T ss_pred HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCccccc
Confidence 33444 67889999999999999999999876668999999999999999999988654 46999999987643
Q ss_pred CC-CCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEE
Q 022372 222 PE-FAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~-~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v 257 (298)
.. .++||+|+++++.. .+.+.+.+.|||||+++.+.
T Consensus 315 ~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 315 EKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred chhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 21 26899999987631 24567788999999999754
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=110.46 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=91.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
-+-++.... ......+|||+|||+|.++..+|++. +..++++||+++++.+.|+++++.+++. ++++++++|.
T Consensus 32 DaiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~-----~ri~v~~~Di 104 (248)
T COG4123 32 DAILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE-----ERIQVIEADI 104 (248)
T ss_pred HHHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch-----hceeEehhhH
Confidence 344555554 24457899999999999999999985 4489999999999999999999988776 8999999999
Q ss_pred CCCCCC--CCCccEEEECCCC------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPE--FAPYDAIHVGAAA------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~--~~~fD~Ii~~~~~------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.... ..+||+|+||++. +.+.+...+.|||||.+.+..+
T Consensus 105 ~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 105 KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 875432 2479999999985 1223556789999999999554
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=111.69 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
++++++|||+|||+|+++..+++.+++.++|+++|+++.+.+...+..... .|+.++.+|..... ...+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCccChhhhhcccC
Confidence 789999999999999999999999988889999999987665444433221 57889999986532 1225
Q ss_pred CccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 226 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+||+|+++...++ +..++.+.|||||.+++.+.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 7999999987543 33578889999999999543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=110.71 Aligned_cols=130 Identities=21% Similarity=0.260 Sum_probs=96.1
Q ss_pred CCCCccccCCCccChHHHHHHHHHHHHccCCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 120 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 120 ~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
....+....+..+++|.....+-..+. ...... +|||+|||||.++..+++.. +..+|+++|+|+++++.|++|+..
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHH
Confidence 344455566777777775544433221 122222 79999999999999999995 667999999999999999999998
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-------------------------------chhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~L 247 (298)
+++ .++.++.+|...... ++||+|++|++. .++..++.+.|
T Consensus 157 ~~l------~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 157 NGL------VRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred cCC------ccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 764 467777777665544 389999999874 11124566789
Q ss_pred ccCcEEEEEECC
Q 022372 248 KPGGRMVIPVGN 259 (298)
Q Consensus 248 kpGG~Lvi~v~~ 259 (298)
+|||.+++.++.
T Consensus 229 ~~~g~l~le~g~ 240 (280)
T COG2890 229 KPGGVLILEIGL 240 (280)
T ss_pred CCCcEEEEEECC
Confidence 999999999884
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=116.69 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=85.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+...+. +.+|.+|||+|||+|+.+..+++..+ .++|+++|+++++++.+++|+++.+.. .++.+..+|..
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~ 299 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGR 299 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeccccc
Confidence 34455555 77899999999999999999999875 679999999999999999999886642 23444666665
Q ss_pred CCCC--CCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 219 KGWP--EFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~--~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... ..++||.|+++++.. .+.+++.+.|||||+|+++..
T Consensus 300 ~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 300 GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4322 346899999886421 244677889999999998754
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-13 Score=102.71 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=58.9
Q ss_pred EEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEEC
Q 022372 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVG 233 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~ 233 (298)
||+|||+|.++..+.+.. +..+++++|+|+.+++.|++++..... .+......+..+.... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhh
Confidence 799999999999999985 668999999999999999988877543 3333444333332211 1589999999
Q ss_pred CCCchh------HHHHHhccccCcEE
Q 022372 234 AAAPEI------PQALIDQLKPGGRM 253 (298)
Q Consensus 234 ~~~~~l------~~~l~~~LkpGG~L 253 (298)
.+++++ .+++.+.|||||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 998765 36788999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=106.99 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~ 229 (298)
+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..++ ++++.+|..+.... .++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~~~l~~~~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLYDALPTALRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeechhhcchhcCCCEeE
Confidence 4589999999999999999875 44689999999999999999987632 46788887654331 257999
Q ss_pred EEECCCCc--------------------------------hhHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~~--------------------------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|++|.+.. .+.+.+.+.|||||++++..+..
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 99998641 22345568999999999987753
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=104.58 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. .-++.++||+|||.|+.+.+||++. -.|+++|.++..++.+++...+.++ +++....|..
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN 87 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence 34555554 3345799999999999999999984 6999999999999999887776543 4888999987
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
....+ +.||+|++..++. .+.+++.+.++|||.+++
T Consensus 88 ~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 88 DFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp CBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 65444 6899999876653 344677888999999887
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=113.60 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
+.+++.+. ...+..+||||||+|..+..+|+.. |+..++|+|+++.+++.|.+++...++ .|+.++.+|+.
T Consensus 112 ~~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~ 182 (390)
T PRK14121 112 DNFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDAR 182 (390)
T ss_pred HHHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHH
Confidence 34455554 4556799999999999999999995 778999999999999999999887654 68999999986
Q ss_pred CC--CCCCCCccEEEECCCCc------------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KG--WPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~--~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.. ..+.+++|.|+++.+.+ .+.+.+.+.|+|||.+.+....
T Consensus 183 ~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 183 LLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred HhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 42 23447899999988764 4568899999999999996654
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=106.87 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc------CCccCCCCEEEEEcCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA------APLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~------~~~l~~~~v~~~~gD~~~~~~ 222 (298)
.+++.+|||+|||.|+.+..||++. ..|+|+|+|+.+++.+.+....... .......++++.++|..+...
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3577899999999999999999873 6899999999999986432111000 000012578999999987543
Q ss_pred C-CCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 223 E-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~-~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
. .++||.|+....+.++ .+.+.+.|||||++++
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 3579999887765443 4678899999997554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=109.21 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~f 227 (298)
.+++.+|||+|||+|.++..+++.. |..+++++|+++++++.|++++..... .++++++.+|+.+.... .++|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~y 137 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHST 137 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCC
Confidence 3456799999999999999999885 668999999999999999998754322 26899999998754322 2579
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+++..- .++.+.+.+.|+|||++++.+.
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 999987521 3556888999999999999654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-11 Score=103.65 Aligned_cols=108 Identities=24% Similarity=0.340 Sum_probs=85.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|..+..+++..+...+++++|+++.+++.++++.. . ..+++++.+|..
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-----~~~i~~~~~d~~ 98 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-----PLNIEFIQADAE 98 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-----CCCceEEecchh
Confidence 34455554 4578899999999999999999986433689999999999999998764 1 157889999987
Q ss_pred CCCCCCCCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+.....++||+|++...++ .+.+++.+.|+|||++++.
T Consensus 99 ~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 99 ALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred cCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 7554456899999876653 3457889999999999973
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=119.21 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~ 226 (298)
..++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.|+++....+ .++.++.+|..+.. .+.++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccCCCC
Confidence 3467899999999999999999875 66899999999999999998865432 46788889987643 34478
Q ss_pred ccEEEECCCCch-------------------hHHHHHhccccCcEEEEEE
Q 022372 227 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 227 fD~Ii~~~~~~~-------------------l~~~l~~~LkpGG~Lvi~v 257 (298)
||+|+++.++++ +.+++.+.|||||++++.-
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998865543 3467889999999999954
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=101.55 Aligned_cols=102 Identities=30% Similarity=0.418 Sum_probs=75.8
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
..+..+.....++.+|||+|||+|.++..+++. + .+++|+|+++.+++. . ++.....+...
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~------~----------~~~~~~~~~~~ 71 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEK------R----------NVVFDNFDAQD 71 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHH------T----------TSEEEEEECHT
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhh------h----------hhhhhhhhhhh
Confidence 344444433678899999999999999999776 3 499999999999988 1 11222222223
Q ss_pred CCCCCCCccEEEECCCCchhH------HHHHhccccCcEEEEEECCC
Q 022372 220 GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.....++||+|++..++++++ +.+.+.|||||.+++.+...
T Consensus 72 ~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 72 PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 233447999999999987654 78899999999999988764
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-11 Score=104.97 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=76.6
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.++..+.....++.+|||+|||+|..+..+++.. ..+|+|+|++++|++.|+++. .++++|...
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~ 103 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------------DKVVGSFEA 103 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------------ceEEechhh
Confidence 3444443233457899999999999999999875 269999999999999997531 245778777
Q ss_pred CCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++++||+|++..++++ ..+++.+.|||. ..++.++
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~-~~ile~~ 147 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ-VGFIAMG 147 (226)
T ss_pred CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc-eEEEEeC
Confidence 6556689999999998764 447899999994 3344443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=108.12 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=86.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ++++.+|||+|||+|..+..+++.. |+.+++++|. +.+++.+++++.+.+.. ++++++.+|..
T Consensus 139 ~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~rv~~~~~d~~ 209 (306)
T TIGR02716 139 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIY 209 (306)
T ss_pred HHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc-----ceEEEEecCcc
Confidence 34455554 6778899999999999999999995 6689999997 78999999999887654 68999999987
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+...+ .+|+|++...++ .+.+++++.|||||++++.
T Consensus 210 ~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 210 KESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 53322 379997776543 3557889999999999984
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=102.59 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|+.+..+++.. +..+++|+|+++++++.|+++. +++.+..+|..+ ....++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC-CCCCCCE
Confidence 46677899999999999999999875 4479999999999999998763 346778888877 3345799
Q ss_pred cEEEECCCCchh
Q 022372 228 DAIHVGAAAPEI 239 (298)
Q Consensus 228 D~Ii~~~~~~~l 239 (298)
|+|+++.+++++
T Consensus 107 D~V~~~~vL~hl 118 (204)
T TIGR03587 107 DLVLTKGVLIHI 118 (204)
T ss_pred EEEEECChhhhC
Confidence 999999988665
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=118.46 Aligned_cols=141 Identities=22% Similarity=0.231 Sum_probs=104.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..++. .+++++.+|.
T Consensus 281 ~~~~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~ 349 (431)
T TIGR00479 281 VDRALEALE--LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTL 349 (431)
T ss_pred HHHHHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCH
Confidence 334444443 5677899999999999999999874 5899999999999999999987664 6899999998
Q ss_pred CCCCC----CCCCccEEEECCCCc----hhHHHHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEee
Q 022372 218 RKGWP----EFAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVP 287 (298)
Q Consensus 218 ~~~~~----~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvP 287 (298)
.+..+ ..++||+|+++.+-. .+.+.+ ..++|++.++++..... ..+..+. +..+..+.+.+|..+|
T Consensus 350 ~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l-~~l~~~~ivyvsc~p~tlard~~~l~---~~gy~~~~~~~~DmFP 425 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTI-IELKPERIVYVSCNPATLARDLEFLC---KEGYGITWVQPVDMFP 425 (431)
T ss_pred HHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHH-HhcCCCEEEEEcCCHHHHHHHHHHHH---HCCeeEEEEEEeccCC
Confidence 65321 235799999998753 333443 35889998888765432 2233332 2348888999999999
Q ss_pred cccchh
Q 022372 288 LTSRDA 293 (298)
Q Consensus 288 l~~~~~ 293 (298)
-|...+
T Consensus 426 ~T~HvE 431 (431)
T TIGR00479 426 HTAHVE 431 (431)
T ss_pred CCCCCC
Confidence 998653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.4e-11 Score=103.88 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------- 221 (298)
++++.+|||+|||+|..+..+++..++.++|+++|+++. .. .++++++++|..+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~------~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP------IVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC------CCCcEEEecCCCChHHHHHHHH
Confidence 578899999999999999999999777789999999881 01 156899999988742
Q ss_pred -CCCCCccEEEECCCC-----------------chhHHHHHhccccCcEEEEEECC
Q 022372 222 -PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...++||+|+++.+. +.+.+.+.+.|||||.+++.+..
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 234789999998743 12457788999999999996543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=107.36 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH----hcc----------------
Q 022372 150 KPGMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEK----SAA---------------- 201 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~----~t~~La~~~g~----~~~V~giD~s~~~l~~A~~~~~~----~~~---------------- 201 (298)
.++.+|||+|||+|. ++..+++..+. +.+|+|+|+++.+++.|++..-. .+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 45566665432 46899999999999999975410 000
Q ss_pred --CCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 202 --APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 202 --~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.+ ..+++|.++|..+..++.++||+|++..++. .+.+++.+.|||||.|++--.
T Consensus 178 ~v~~~i-r~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPEL-KERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHH-hCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0000 1478999999988665557999999987763 355788999999999998433
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=102.14 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=80.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+.....++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++++...+.. .++.+..+|.
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d~ 113 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVA-----GNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECCh
Confidence 444566654224567899999999999999998862 58999999999999999998764432 4789999998
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
.... ++||+|++...+.++ .+++.+.+++++.+.+
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6643 689999987765432 3556667776655544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-11 Score=112.81 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD 228 (298)
.++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++|++.++. ++++++.+|..+.... ..+||
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D 302 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPE 302 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCC
Confidence 456799999999999999999753 6899999999999999999988654 5899999998653321 24699
Q ss_pred EEEECCCCchhHHHH---HhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchhh
Q 022372 229 AIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l---~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~ 294 (298)
+|+++++-..+...+ ...++|++.++++.+... .++..+ +.|..+.+.++.++|-|...+-
T Consensus 303 ~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 303 LVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred EEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccCCCCCcEEE
Confidence 999999875443322 345799999999887643 233333 2489999999999999998763
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-11 Score=101.72 Aligned_cols=98 Identities=27% Similarity=0.385 Sum_probs=80.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~ 225 (298)
.++||.+|||+|||.|.+...|.+.- +.+.+|+|++++.+..+.++ -+.++++|..++. .+++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCC
Confidence 47899999999999999999998853 37899999999999888653 4568999987654 3458
Q ss_pred CccEEEECCCCchhH---HHHHhccccCcEEEEEECCC
Q 022372 226 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+||.|+.+.+++++. .-+.+.|+-|...+++++|-
T Consensus 75 sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred CccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 999999999987664 34567789999999999984
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=96.87 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.++++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .++++++.+|+.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDAL 69 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchh
Confidence 45566665 6788899999999999999999873 6899999999999999988743 158999999998
Q ss_pred CCCCCCCCccEEEECCCCch---hHHHHHhc--cccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE---IPQALIDQ--LKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~---l~~~l~~~--LkpGG~Lvi~v 257 (298)
+...+...||.|+++.+... +...+.+. +.++|.+++..
T Consensus 70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 86555457999999998753 33334332 34777777743
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=97.54 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+...++..+. ...++.+|||+|||+|.++..++.. +. .+|+++|.++++++.+++|++.++. .+++++.+|
T Consensus 40 v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr-~a-~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D 110 (199)
T PRK10909 40 VRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSR-YA-AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTN 110 (199)
T ss_pred HHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEch
Confidence 3344555554 2346789999999999999865444 23 6999999999999999999988654 579999999
Q ss_pred CCCCCC-CCCCccEEEECCCC-chhHHH----HHh--ccccCcEEEEEECC
Q 022372 217 GRKGWP-EFAPYDAIHVGAAA-PEIPQA----LID--QLKPGGRMVIPVGN 259 (298)
Q Consensus 217 ~~~~~~-~~~~fD~Ii~~~~~-~~l~~~----l~~--~LkpGG~Lvi~v~~ 259 (298)
...... ...+||+|+++++. ..+.+. +.+ +|+|+|.+++....
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 876432 22479999999995 333333 333 36889999987654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=113.61 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=81.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+++++++.+++.... .++++++++|..
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT 93 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc
Confidence 34455554 4567899999999999999999874 5899999999999887653211 158899999986
Q ss_pred CC--CCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 219 KG--WPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~--~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
.. ..+.++||+|+++.++.+ +.+++.+.|||||++++.
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 32 223478999999987654 446788999999999884
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-10 Score=101.80 Aligned_cols=128 Identities=19% Similarity=0.294 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.|.+|||||||+||.+-.++.. |+ ..|+|+|.+.......+.--.- ++..+..+....+.+..+..+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~------lg~~~~~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHF------LGQDPPVFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHH------hCCCccEEEcCcchhhccccCCcCEE
Confidence 5789999999999999999988 45 5899999999877664322221 11122223332333433446789999
Q ss_pred EECCCCch------hHHHHHhccccCcEEEEEEC--CCceeEEEEEEcCCCCeEEEEeeeEEEeecccc
Q 022372 231 HVGAAAPE------IPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 291 (298)
Q Consensus 231 i~~~~~~~------l~~~l~~~LkpGG~Lvi~v~--~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~ 291 (298)
++.+++-| ...++.+.|++||.||+-.- ++.....++- ++.+ -.+-.|.|+|-...
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P---~~rY--a~m~nv~FiPs~~~ 250 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP---EDRY--AKMRNVWFIPSVAA 250 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc---CCcc--cCCCceEEeCCHHH
Confidence 99999844 34788999999999998432 2222222221 1122 24567888886443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=100.83 Aligned_cols=128 Identities=22% Similarity=0.276 Sum_probs=106.1
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
+.+.+...|..+...+.++..|+ +.||.+|+|-|+|+|.++..+++.++|.++++..|+.....+.|++.+++.++.
T Consensus 80 l~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~- 156 (314)
T KOG2915|consen 80 LALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG- 156 (314)
T ss_pred hhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-
Confidence 45566677776667888999998 999999999999999999999999999999999999999999999999998876
Q ss_pred ccCCCCEEEEEcCCCC-CCCC-CCCccEEEECCCCchhH-HHHHhccccCcEEEEEEC
Q 022372 204 LLKEGSLSVHVGDGRK-GWPE-FAPYDAIHVGAAAPEIP-QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~-~~~~-~~~fD~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~ 258 (298)
+++++.+.|+.. ++.. ...+|+|+.+.+.++.. ..+...||.+|.-++.+.
T Consensus 157 ----~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 157 ----DNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred ----cceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEecc
Confidence 899999999775 3332 46899999999987643 455568888775555443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=104.85 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+.+.+||++|||+|..+..+++.. +..+|+++|+++++++.|++++...... ....++++++.+|+..... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCccc
Confidence 455799999999999999988762 3468999999999999999988653211 1234789999999876443 246899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++..- .++.+.+.+.|+|||++++..+.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99998642 23457788999999999986543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-10 Score=103.28 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=77.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC--
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-- 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~-- 225 (298)
.++++.+|||+|||+|..+..|++.+....+|+++|+|++|++.|++++..... .-++.++++|..+......
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccchhhhhccc
Confidence 356778999999999999999998863246899999999999999998765321 1357778999876432112
Q ss_pred ---CccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 226 ---PYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ---~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+++++..+. .+.+++.+.|+|||.+++.+.
T Consensus 135 ~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 135 AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 233445444432 345788999999999998663
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=98.07 Aligned_cols=94 Identities=26% Similarity=0.287 Sum_probs=72.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++.+|||+|||+|.++..+++...+.++|+++|+++.+ .. .+++++++|..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~------~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI------ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC------CCceEEEeeCCChhHHHHHH
Confidence 36789999999999999999999886555789999999864 11 46788888876532
Q ss_pred --CCCCCccEEEECCCC-----------------chhHHHHHhccccCcEEEEEEC
Q 022372 222 --PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++||+|+++... ..+.+.+.+.|+|||++++.+.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 233579999997531 2345778899999999999553
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-10 Score=103.70 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~f 227 (298)
+...+||+||+|.|..+..+++. .+..+|+.+|+++++++.|++.+..... .+..++++++.+|+..... +.++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 45689999999999999999886 3446899999999999999998865321 2445799999999865432 13689
Q ss_pred cEEEECCCCc----------hhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+++..-+ ++.+.+.+.|+|||+++...+
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9999987542 345788999999999987443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=99.99 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
..++.+|||+|||+|.++..+++.. ++..+|+|+|+++++++.|+++... .++.+...+........+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~ 128 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGE 128 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCC
Confidence 3566899999999999999888653 3446999999999999999887543 345555555433322447
Q ss_pred CccEEEECCCCchhH--------HHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIP--------QALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi 255 (298)
+||+|+++.+++++. +++.+.++ |+.++.
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEe
Confidence 899999999886554 45666776 444443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=98.89 Aligned_cols=101 Identities=22% Similarity=0.140 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC---------CccCCCCEEEEEcCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------PLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~---------~~l~~~~v~~~~gD~~~ 219 (298)
+.++.+|||+|||.|..+..||++. .+|+|+|+++.+++.+.+. .++. ......++++.++|...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccC
Confidence 5667899999999999999999873 6899999999999987432 1111 01123678999999987
Q ss_pred CCCC-CCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 220 GWPE-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~-~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
..+. .+.||.|+....+.++ .+.+.+.|||||++++
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 6433 2579999877665443 4778899999997443
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=95.19 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=80.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
.+|||+|||+|.+...|++.. -.+..+|+|.++.+++.|+...++.+.. +.|+|.+.|...+....+.||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~-----n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFS-----NEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCC-----cceeEEEeeccCCcccccceeEEee
Confidence 499999999999999999883 4467999999999999998877776654 4599999999885444467777755
Q ss_pred CCCCc--------------hhHHHHHhccccCcEEEEEECCC
Q 022372 233 GAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 233 ~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
-+.+. -+...+.+.|+|||+++|...|.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 54432 13366788999999999987764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=114.33 Aligned_cols=140 Identities=15% Similarity=0.077 Sum_probs=101.5
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCC---CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLK---PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~---~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~ 195 (298)
+....+.++.+..+++|..... .+.|..... ++.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++|
T Consensus 84 F~~l~~~V~p~VLIPRpeTE~l-ve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 84 RKKLTMMEIPSIFIPEDWSFTF-YEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ecCCceeeCCCcccCchhHHHH-HHHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 3445566777888888875544 333542211 24689999999999999999985 557999999999999999999
Q ss_pred HHHhccCC----------ccCCCCEEEEEcCCCCCCCCC-CCccEEEECCCCc---------------------------
Q 022372 196 IEKSAAAP----------LLKEGSLSVHVGDGRKGWPEF-APYDAIHVGAAAP--------------------------- 237 (298)
Q Consensus 196 ~~~~~~~~----------~l~~~~v~~~~gD~~~~~~~~-~~fD~Ii~~~~~~--------------------------- 237 (298)
+..++... .....+++++++|........ .+||+|++|.+.-
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~ 241 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNY 241 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCcc
Confidence 98764310 001247999999988765432 3699999998730
Q ss_pred -----------------hhHHHHHhccccCcEEEEEECCC
Q 022372 238 -----------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 238 -----------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+.++..+.|||||.+++.++..
T Consensus 242 ~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 242 CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred ccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 01134556899999999999864
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=96.77 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=68.8
Q ss_pred HHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+.. ...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+.. .++.+..+|
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d 120 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA-----GNITFEVGD 120 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cCcEEEEcC
Confidence 3445555542 13567899999999999999999863 47999999999999999998765432 578899988
Q ss_pred CCCCCCCCCCccEEEECCCCch
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
... ..++||+|++..++++
T Consensus 121 ~~~---~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 121 LES---LLGRFDTVVCLDVLIH 139 (230)
T ss_pred chh---ccCCcCEEEEcchhhc
Confidence 422 2368999999887744
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=108.06 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--------
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-------- 223 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-------- 223 (298)
+.+|||++||+|.++..+++.. .+|+++|.++.+++.|++|+..++. .|++++.+|+.+....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~ 277 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFN 277 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhccccc
Confidence 3579999999999999999875 5899999999999999999988664 5899999998653210
Q ss_pred --------CCCccEEEECCCCchhHHHHHhc-cccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 224 --------FAPYDAIHVGAAAPEIPQALIDQ-LKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 224 --------~~~fD~Ii~~~~~~~l~~~l~~~-LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
..+||+|+++++-..+.+.+.+. .+|++.++++.+... ..+..+. . .++.+.+.++..+|-|...
T Consensus 278 ~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-gY~l~~v~~~DmFPqT~Hv 353 (362)
T PRK05031 278 RLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-THKVERFALFDQFPYTHHM 353 (362)
T ss_pred ccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-CcEEEEEEEcccCCCCCcE
Confidence 12589999999976655555433 357888888887643 2334443 2 3899999999999999887
Q ss_pred h
Q 022372 293 A 293 (298)
Q Consensus 293 ~ 293 (298)
+
T Consensus 354 E 354 (362)
T PRK05031 354 E 354 (362)
T ss_pred E
Confidence 6
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=95.90 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=101.6
Q ss_pred CCCCCCCCccccCCCccChHHHHHH---HHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q 022372 116 TPPYVDSPMAIGYNATISAPHMHAT---CLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191 (298)
Q Consensus 116 ~~aY~d~~~~~g~~~~is~p~~~~~---~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~ 191 (298)
.+.|.|-.+....|..|++|..... +++.+.. ....+..+||+|||+|..+..++..++ .++|+++|.++.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHH
Confidence 3566666666677888888875443 3444421 112345899999999999999999885 6899999999999999
Q ss_pred HHHHHHHhccCCccCCCCEEEEEc----CCCCCC-CCCCCccEEEECCCC------------------------------
Q 022372 192 SIQNIEKSAAAPLLKEGSLSVHVG----DGRKGW-PEFAPYDAIHVGAAA------------------------------ 236 (298)
Q Consensus 192 A~~~~~~~~~~~~l~~~~v~~~~g----D~~~~~-~~~~~fD~Ii~~~~~------------------------------ 236 (298)
|.+|.++..+. +++.+++- |..... ...+++|++++|.+.
T Consensus 188 a~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 188 AKENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHhhc-----CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 99999998876 67777744 433332 123789999999874
Q ss_pred --chhHHHHHhccccCcEEEEEECC
Q 022372 237 --PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 237 --~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.++..-+-+.|+|||.+.+.+..
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEecc
Confidence 11223456899999999998873
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=97.20 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ .+++++..+..... ...++|
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCc
Confidence 4568899999999999999998863 589999999999999998876543 25677777765443 123689
Q ss_pred cEEEECCCCc------hhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|++...++ .+.+.+.+.|+|||++++...
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999876654 345788899999999998654
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-10 Score=98.16 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=77.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE-EEEcCCCCCC-CCCCCccEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGW-PEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~-~~~gD~~~~~-~~~~~fD~I 230 (298)
..|||||||+|..-.+.-- .|..+|+++|.++.|-+.+.+.+.++.. .++. ++++++.+.. .++++||+|
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP------LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC------cceEEEEeechhcCcccccCCeeeE
Confidence 3579999999987544432 2557999999999999999999988643 4666 8999998765 356899999
Q ss_pred EECCCC------chhHHHHHhccccCcEEEEE
Q 022372 231 HVGAAA------PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 231 i~~~~~------~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+++.++ .+..+++.++|||||++++-
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 988876 34668999999999999983
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-10 Score=101.18 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
.+.+||++|||+|..+..+++.. +..+++++|+++++++.+++++..... .+..++++++.+|+...... .++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccE
Confidence 34699999999999998888763 346899999999999999998765331 13446889999888653221 368999
Q ss_pred EEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+++... .+..+.+.+.|+|||++++..+.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9998752 23457888999999999986443
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=96.11 Aligned_cols=93 Identities=12% Similarity=-0.040 Sum_probs=69.8
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g--~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l 205 (298)
.|+..+.+.+...+... ...+.+|||+|||+|.++..+++... +..+|+++|+++.+++.|+++.
T Consensus 30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------- 96 (241)
T PHA03412 30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------- 96 (241)
T ss_pred CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------
Confidence 45666655555544321 22367999999999999999988642 2468999999999999999774
Q ss_pred CCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 206 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 206 ~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
.++.++.+|...... .++||+|++|++.
T Consensus 97 --~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 97 --PEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred --cCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 357888999876433 3689999999986
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=81.03 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=75.1
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccEEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHV 232 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~Ii~ 232 (298)
+++|+|||+|..+..+++ .+..+++++|.++..++.+++..... ...++++..+|..+... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAAL------LADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc------cccceEEEEcChhhhccccCCceEEEEE
Confidence 489999999999999988 24479999999999999998543322 12578899998877553 3468999999
Q ss_pred CCCCch-------hHHHHHhccccCcEEEEE
Q 022372 233 GAAAPE-------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 233 ~~~~~~-------l~~~l~~~LkpGG~Lvi~ 256 (298)
+.+... +.+.+.+.|||||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998743 447778899999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-10 Score=96.88 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
.+.+|||+|||+|.++..+++.. .+++++|.++.+++.+++++...+. .++++..+|..+.... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccE
Confidence 46799999999999999988863 4799999999999999998876432 2678888887654332 368999
Q ss_pred EEECCCCc------hhHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAP------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|++...++ .+.+.+.+.|+|||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99886654 345788899999999998654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=94.84 Aligned_cols=97 Identities=23% Similarity=0.312 Sum_probs=72.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~ 225 (298)
.++++.+|||+|||+|.++..+++..+ ..++|+|+++++++.+++ .+++++.+|..+.. ...+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~-------------~~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA-------------RGVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH-------------cCCeEEEEEhhhcccccCCC
Confidence 356788999999999999998887632 578999999999988853 24567778876532 2346
Q ss_pred CccEEEECCCCchhH---HHHHhccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~ 259 (298)
+||+|+++.+++++. +.+.+.++++|..++.+++
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 899999999886653 3445566777777877765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-10 Score=106.47 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=98.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---------
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--------- 223 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--------- 223 (298)
.+|||++||+|.++..+++.. .+|+++|+++++++.|++|+..++. .+++++.+|..+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccc
Confidence 479999999999999999875 4899999999999999999988664 5799999998653221
Q ss_pred -------CCCccEEEECCCCchhHHHH-HhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 224 -------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 224 -------~~~fD~Ii~~~~~~~l~~~l-~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
...||+|+++++-..+...+ ....+|++.++++..... .++..+. .+ ++.+.+.++..+|-|...+
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-HRVERFALFDQFPYTHHME 345 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-cEEEEEEEcccCCCCCcEE
Confidence 12389999999865544443 334468899998887643 3344443 23 8899999999999998876
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=94.83 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHccCCC--CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 133 SAPHMHATCLQLLEENLKP--GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~--g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
.+..+..+.+++|. +++ ..-|||||||+|..+..+... | ..++|+|+|+.|++.|.++--+ -
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~-G--h~wiGvDiSpsML~~a~~~e~e-----------g 95 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS-G--HQWIGVDISPSMLEQAVERELE-----------G 95 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC-C--ceEEeecCCHHHHHHHHHhhhh-----------c
Confidence 34567888899887 655 568999999999999988875 2 6899999999999999873211 2
Q ss_pred EEEEcCCCCCCC-CCCCccEEEECCCCchhH-----------------HHHHhccccCcEEEEEECC
Q 022372 211 SVHVGDGRKGWP-EFAPYDAIHVGAAAPEIP-----------------QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 211 ~~~~gD~~~~~~-~~~~fD~Ii~~~~~~~l~-----------------~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++.+|.-++.+ ..++||.+++..++.++. ..++..|++|++.|+.+-.
T Consensus 96 dlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 96 DLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 567778777554 347999998888764322 4578899999999997643
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-09 Score=103.45 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
.++|.+|||+++|.|.-|..++..++..+.+++.|+++..++..++|+.+.+. .|+.+...|..... ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 68999999999999999999999987778999999999999999999998665 68888888876532 112579
Q ss_pred cEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|+++++.. ++.+++.+.|||||+||.+.-+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9999998852 2335667899999999987654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=104.77 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~ 224 (298)
+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|++|+..+++. ..+++++.+|+.+... ..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcC
Confidence 346789999999999998776643 2 359999999999999999999987642 2479999999876432 23
Q ss_pred CCccEEEECCCCc---------------hhHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++||+|+++++.- .+.....+.|+|||.++....
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5899999998751 122356789999999997543
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=92.95 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=93.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.+++.+.. +-..+++||+|.-+||.+..+|..++++++|+++|++++..+.+.+..+..+.. ..++++++++
T Consensus 61 ~g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----HKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----ceeeeeecch
Confidence 4555555542 445689999999999999999999988999999999999999998888888775 7899999998
Q ss_pred CCCC------CCCCCccEEEECCCCch---hHHHHHhccccCcEEEE
Q 022372 218 RKGW------PEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~------~~~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
.+.+ .+.++||.+|+++.... ..+++.+++|+||+|++
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 8632 13478999999998764 45788999999999997
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=111.41 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
..+|.+|||+|||+|.++..+++. |. .+|+++|+++.+++.|++|+..+++. ..+++++++|+.+... ..++|
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~f 609 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQF 609 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCc
Confidence 345789999999999999999986 33 47999999999999999999987652 2479999999865331 13589
Q ss_pred cEEEECCCC-----------------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++++. ..+...+.+.|+|||.+++....
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999999874 12345678899999999886544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-09 Score=96.73 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=70.6
Q ss_pred HHHHHHHHHcc-CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~-l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+... ..++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++....... .....++++..+|
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g--~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~D 205 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-G--AIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcc
Confidence 44556666421 125789999999999999999986 3 68999999999999999988653210 0112467888888
Q ss_pred CCCCCCCCCCccEEEECCCCchhH
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEIP 240 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l~ 240 (298)
.... .++||+|++..++.+++
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecC
Confidence 6432 36899999998876654
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=94.35 Aligned_cols=76 Identities=17% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
...+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++ ++++++++|....... .+||
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----------~~v~~v~~D~~e~~~~-~kFD 128 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----------PEAEWITSDVFEFESN-EKFD 128 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------cCCEEEECchhhhccc-CCCc
Confidence 3455799999999999999888874 3369999999999999998763 4678999998875433 6899
Q ss_pred EEEECCCCc
Q 022372 229 AIHVGAAAP 237 (298)
Q Consensus 229 ~Ii~~~~~~ 237 (298)
+|+++.+..
T Consensus 129 lIIsNPPF~ 137 (279)
T PHA03411 129 VVISNPPFG 137 (279)
T ss_pred EEEEcCCcc
Confidence 999999863
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-09 Score=91.85 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------ccCCccCCCCEEEEEcCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS------AAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~------~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
+.++.+||+.|||.|+....||+.. .+|+|+|+|+.+++.+.+..... +........++++.++|..+..+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 4567899999999999999999984 68999999999999986532100 00001123579999999987543
Q ss_pred ---CCCCccEEEECCCCchhH--------HHHHhccccCcEEEEEE
Q 022372 223 ---EFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 223 ---~~~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi~v 257 (298)
..++||.|+-.+.+..++ +.+.++|+|||.+++-.
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 125899998888775544 67888999999998844
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=96.02 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++++.. +++++
T Consensus 26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---------~~v~~ 91 (272)
T PRK00274 26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---------DNLTI 91 (272)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---------CceEE
Confidence 44556777888776 7888999999999999999999984 3899999999999999887532 58999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCc
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
+++|+.+...+.-.+|.|+++.+..
T Consensus 92 i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 92 IEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred EEChhhcCCHHHcCcceEEEeCCcc
Confidence 9999887543321258999998864
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=96.60 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=80.7
Q ss_pred CCCcc-ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022372 128 YNATI-SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 206 (298)
Q Consensus 128 ~~~~i-s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~ 206 (298)
.|++. ..+.+...+++.+. +.++++|||||||+|.+|..+++.. .+|+++|+++++++.+++++...+..
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~---- 84 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA---- 84 (294)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC----
Confidence 34544 56778888888876 7889999999999999999999874 58999999999999999998765422
Q ss_pred CCCEEEEEcCCCCCCCCCCCccEEEECCCCc
Q 022372 207 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 207 ~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
++++++.+|+.+... ..||.|+++.+..
T Consensus 85 -~~v~ii~~Dal~~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 85 -SKLEVIEGDALKTEF--PYFDVCVANVPYQ 112 (294)
T ss_pred -CcEEEEECCHhhhcc--cccCEEEecCCcc
Confidence 689999999977433 4689999998863
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=97.91 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhccCCccCCCCEEEEEcCCCCCCCC-CCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~--~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~ 226 (298)
....+||++|+|+|+.+..+.+. ++..+|+++|+++++++.|++. +.... ...+..++++++.+|+.+.... .+.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~-~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLN-KSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhc-cccCCCCceEEEECcHHHHHHhcCCC
Confidence 34579999999999988888876 3447999999999999999962 11110 0113458999999999874332 358
Q ss_pred ccEEEECCCCc-----------hhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
||+|+++.+-+ ++.+.+.+.|+|||++++..+
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999996432 245788999999999988544
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-09 Score=104.09 Aligned_cols=145 Identities=22% Similarity=0.256 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
..++..+++.+. ..++++|||+=||.|.++..+|+.. .+|+|+|+++++++.|++|++.++. .|+++..
T Consensus 279 ekl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~ 347 (432)
T COG2265 279 EKLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI------DNVEFIA 347 (432)
T ss_pred HHHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEe
Confidence 345666667776 6678899999999999999999775 6999999999999999999999776 5799999
Q ss_pred cCCCCCCCC---CCCccEEEECCCCchhHH---HHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEe
Q 022372 215 GDGRKGWPE---FAPYDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYV 286 (298)
Q Consensus 215 gD~~~~~~~---~~~fD~Ii~~~~~~~l~~---~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fv 286 (298)
++..+..+. ...+|+|+++++-....+ .....++|..+++++++... .++..+. ++.+..+.+..+..+
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~---~~gy~i~~v~~~DmF 424 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILA---STGYEIERVQPFDMF 424 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH---hCCeEEEEEEEeccC
Confidence 998864433 247899999998654443 33445789999999887643 2233332 233556778888999
Q ss_pred ecccchh
Q 022372 287 PLTSRDA 293 (298)
Q Consensus 287 Pl~~~~~ 293 (298)
|-|...+
T Consensus 425 P~T~HvE 431 (432)
T COG2265 425 PHTHHVE 431 (432)
T ss_pred CCccccC
Confidence 9887654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-09 Score=104.51 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhccCCccCCCCEEEEEcCCCCCCC-CCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~--~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~ 226 (298)
+++.+|||+|+|+|..+..+++. ++..+++++|+++++++.++++ +..... ..++.++++++.+|+.+... ..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 45679999999999999988875 3336999999999999999984 222110 11344789999999886432 2368
Q ss_pred ccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
||+|+++...+ ++.+.+.+.|||||++++....
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 99999997543 2457888999999999986543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=91.66 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=81.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. ..++.+|||+|||+|.++..+++.. ..|+++|+++++++.+++++.. .++++
T Consensus 12 l~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--------~~~v~ 78 (253)
T TIGR00755 12 LIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--------YERLE 78 (253)
T ss_pred CCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--------CCcEE
Confidence 455677888888876 7788999999999999999999985 4699999999999999887632 16899
Q ss_pred EEEcCCCCCCCCCCCcc---EEEECCCCchhHHHHHhcc-ccCcE
Q 022372 212 VHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQL-KPGGR 252 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD---~Ii~~~~~~~l~~~l~~~L-kpGG~ 252 (298)
++.+|+...... .|| .|+++.+...-...+.++| .+|+.
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~ 121 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFR 121 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence 999999875443 466 8888888754444455555 44443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=89.03 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCCCCcc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFAPYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~~~~fD 228 (298)
...+||||||.|.....+|+. .|+..++|+|+....+..+.+++.+.++ .|+.++.+|+... ..+.+++|
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~ 90 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVD 90 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEE
T ss_pred CCeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchh
Confidence 348899999999999999999 4789999999999999999999988655 7999999998872 23347999
Q ss_pred EEEECCCC--------------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|+++.+- +.+.+.+.+.|+|||.+.+-...
T Consensus 91 ~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 91 RIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp EEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred eEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 99999874 23457889999999999987655
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=85.34 Aligned_cols=95 Identities=24% Similarity=0.290 Sum_probs=73.5
Q ss_pred CccChHHHHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 130 ATISAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 130 ~~is~p~~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
|..+.+.+.++++.... ...-.|.+|+|+|||||.++...+-+ |+ .+|+++|+++++++.+++|..+.. .
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~-------g 93 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL-------G 93 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC-------C
Confidence 33344455566555442 12335778999999999999888876 56 699999999999999999998722 6
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
++.++.+|+.+.. .+||.++.|+++
T Consensus 94 ~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 94 DVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred ceEEEEcchhhcC---CccceEEECCCC
Confidence 8999999998753 568999999886
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=91.45 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=75.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .++++
T Consensus 12 l~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--------~~~v~ 78 (258)
T PRK14896 12 LIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--------AGNVE 78 (258)
T ss_pred cCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--------CCCEE
Confidence 356677888888876 7788999999999999999999983 5899999999999999988743 16899
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
++++|+.+... ..||.|+++.+..
T Consensus 79 ii~~D~~~~~~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 79 IIEGDALKVDL--PEFNKVVSNLPYQ 102 (258)
T ss_pred EEEeccccCCc--hhceEEEEcCCcc
Confidence 99999987533 3589999998864
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.5e-09 Score=91.42 Aligned_cols=110 Identities=25% Similarity=0.334 Sum_probs=76.8
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-Ccc----------------
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLL---------------- 205 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l---------------- 205 (298)
..|+.....+..+|||||-+|.+|+.+|+.+++ ..++|+|+++.++..|+++++..... ..+
T Consensus 50 k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is 128 (288)
T KOG2899|consen 50 KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS 128 (288)
T ss_pred hhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc
Confidence 334434556788999999999999999999977 57999999999999999988542210 000
Q ss_pred -------------------CCCCEEEEEcCCCCCCCCCCCccEEEECCCC------------chhHHHHHhccccCcEEE
Q 022372 206 -------------------KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 206 -------------------~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~------------~~l~~~l~~~LkpGG~Lv 254 (298)
...|..+...|.. +.....||+|+|-... ..+++.+.++|.|||+||
T Consensus 129 ~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 129 QRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 0011222222222 2234579999877653 356688999999999999
Q ss_pred E
Q 022372 255 I 255 (298)
Q Consensus 255 i 255 (298)
+
T Consensus 207 v 207 (288)
T KOG2899|consen 207 V 207 (288)
T ss_pred E
Confidence 8
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-08 Score=84.61 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CC-C
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EF-A 225 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~-~ 225 (298)
-++.+|||++||+|.++..++.+ |. .+|+++|.++.+++.+++|++..+.. .+++++.+|+..... .. .
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~-----~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKSG-----EQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCc-----ccEEEEehhHHHHHHHhhccCC
Confidence 35789999999999999999988 44 48999999999999999999887653 478999999854321 11 2
Q ss_pred CccEEEECCCCch-----hHHHHH--hccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~~-----l~~~l~--~~LkpGG~Lvi~v~~ 259 (298)
.||+|+.+++... +.+.+. .+|+++|.+++....
T Consensus 121 ~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 121 FDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4899999998742 223332 368999999886543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=87.51 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=76.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..++|..|+|+.||.|+++..+|+. +...+|+++|++|..++..++|++.+++. +++...++|..+... ...|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GGG----TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHHHhcC-cccc
Confidence 4688999999999999999999986 34478999999999999999999998875 789999999988766 5899
Q ss_pred cEEEECCCC--chhHHHHHhccccCcEEE
Q 022372 228 DAIHVGAAA--PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 228 D~Ii~~~~~--~~l~~~l~~~LkpGG~Lv 254 (298)
|.|+.+.+. .+..+.+.+.+|+||.+-
T Consensus 171 drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999999875 357788999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=89.98 Aligned_cols=113 Identities=29% Similarity=0.371 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-hcc-----CCccCC
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAA-----APLLKE 207 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~-~~~-----~~~l~~ 207 (298)
.|.+... ++.+. .+++.+||+.|||.|+-...||+.. .+|+|+|+++.+++.+.+.... ... ......
T Consensus 23 ~p~L~~~-~~~l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 96 (218)
T PF05724_consen 23 NPALVEY-LDSLA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQA 96 (218)
T ss_dssp THHHHHH-HHHHT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETT
T ss_pred CHHHHHH-HHhcC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecC
Confidence 3444433 33344 6778899999999999999999983 6999999999999998543221 110 001223
Q ss_pred CCEEEEEcCCCCCCCCC-CCccEEEECCCCchhH--------HHHHhccccCcE
Q 022372 208 GSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEIP--------QALIDQLKPGGR 252 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~~-~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~ 252 (298)
++|++.++|.....+.. ++||+|+--..+..++ +.+.++|||||.
T Consensus 97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 97 GRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp SSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred CceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 67899999998854432 4799999888775444 678899999999
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=91.31 Aligned_cols=113 Identities=27% Similarity=0.289 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|.....+..+. ++++|..|||-=||||.+.....-. | .+++|.|++..|++-|+.|++..+. ....+..
T Consensus 183 P~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~-G--~~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLM-G--ARVIGSDIDERMVRGAKINLEYYGI------EDYPVLK 251 (347)
T ss_pred HHHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhc-C--ceEeecchHHHHHhhhhhhhhhhCc------CceeEEE
Confidence 44444444444 4899999999999999998887776 4 7999999999999999999998664 4555555
Q ss_pred c-CCCCCCCCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEEC
Q 022372 215 G-DGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 215 g-D~~~~~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. |+........++|.|+++++. .+..+.+.+.||+||+++++.+
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 888776665679999999874 2344778899999999999887
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-08 Score=91.22 Aligned_cols=106 Identities=26% Similarity=0.359 Sum_probs=85.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~ 223 (298)
..++|.+|||+.++.|.-|.+++++..+. ..|+++|.++..+...++|+++.+. .|+.++..|.... .+.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEecccccccccccc
Confidence 38899999999999999999999997553 4569999999999999999999665 6788888887642 233
Q ss_pred CCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.++||.|+++++. .++.+...+.|||||+|+.+.-.
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 2369999999985 12335677899999999997643
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-09 Score=91.33 Aligned_cols=111 Identities=25% Similarity=0.235 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~ 226 (298)
.+.|.+|||.+.|-||.++..++.. . .+|+.+|.++..++.|+-|- ++..+...+++++.||..+.. .++++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A-~~VitvEkdp~VLeLa~lNP----wSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-A-IHVITVEKDPNVLELAKLNP----WSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-C-cEEEEEeeCCCeEEeeccCC----CCccccccccEEecccHHHHHhcCCccc
Confidence 5679999999999999999998874 2 49999999999999987543 333344457899999987632 24478
Q ss_pred ccEEEECCCC---------chhHHHHHhccccCcEEEEEECCCceeEE
Q 022372 227 YDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVGNIFQDLK 265 (298)
Q Consensus 227 fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~ 265 (298)
||+|+-+++- +++.+++++.|||||+|+--++++.+..+
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr 253 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR 253 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc
Confidence 9999988763 35568999999999999999998765433
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=83.33 Aligned_cols=123 Identities=20% Similarity=0.305 Sum_probs=93.5
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
|.+.|..+|. -..+++....+|...+. ...|..|||+|.|+|.+|..+.+..-+...++++|.+++.+....+.+
T Consensus 19 wi~~PrtVGa-I~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-- 93 (194)
T COG3963 19 WIDNPRTVGA-ILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-- 93 (194)
T ss_pred HhcCCceeee-ecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence 4456666662 33455666677777776 778889999999999999888777555679999999999999887664
Q ss_pred hccCCccCCCCEEEEEcCCCCCC-----CCCCCccEEEECCCCch--------hHHHHHhccccCcEEEE
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~-----~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 255 (298)
+.++++.||+.+.- .....||.|++..++.. +.+.+...|.+||.++.
T Consensus 94 ---------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 94 ---------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ---------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 45668888876532 23357999999988754 44788889999999887
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=83.87 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=80.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG--------RAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~--------~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
...|.+.+.|+.... .+++..|||--||+|.+....+....... +++|.|+++++++.|++|++..+..
T Consensus 11 ~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~- 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE- 87 (179)
T ss_dssp SS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-
T ss_pred CCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-
Confidence 345666666666665 78899999999999999988877753322 3899999999999999999987764
Q ss_pred ccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC--------------chhHHHHHhccccCcEEEE
Q 022372 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi 255 (298)
..+.+.+.|..+.....+++|.|+++.+. ..+.+++.+.|++...+++
T Consensus 88 ----~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 88 ----DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp ----GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred ----CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 57899999988766444789999999986 1233667778898444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-09 Score=93.97 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
+-|...+.++..+. ..+-.++||+|||||..+..+..+. .+.+|+|+|+.|++.|.++-.- + ++
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~Y---------D--~L 172 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLY---------D--TL 172 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccch---------H--HH
Confidence 35666777777665 4556799999999999999998886 6899999999999999765211 1 12
Q ss_pred EEcCCCCCC--CCCCCccEEEECCCC------chhHHHHHhccccCcEEEEEECC
Q 022372 213 HVGDGRKGW--PEFAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 213 ~~gD~~~~~--~~~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++..... ....+||+|....++ +.++..+...|+|||.+.+++.+
T Consensus 173 ~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 233332221 234689999887765 55667788999999999999865
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=86.44 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=85.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCCCCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~~~~fD~ 229 (298)
..+||||||.|.....+|+. .|+..++|||+....+..|.+.+.+.++ +|+.++++|+.. ...+.++.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 48999999999999999999 5888999999999999999999988664 599999999875 3345469999
Q ss_pred EEECCCC--------------chhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+++.+- +...+.+.+.|||||.+.+...+
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 9999874 24557889999999999997765
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.8e-08 Score=92.43 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=85.2
Q ss_pred HHHHHHHHHccCC-CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~-~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+. .. ++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++|++.++. .++++.++|
T Consensus 45 ~~~v~~~~~--~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~D 115 (382)
T PRK04338 45 SVLVLRAFG--PKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKD 115 (382)
T ss_pred HHHHHHHHH--hhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhh
Confidence 344445443 22 346899999999999999998754 35899999999999999999988765 467788999
Q ss_pred CCCCCCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 217 GRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.......+.||+|++++.- ..+.+.+.+.+++||.+.++..
T Consensus 116 a~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 116 ANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred HHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEec
Confidence 86543313579999999742 2444666788999999999843
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.9e-08 Score=90.80 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
...+||.+|+|.|..+..+.+.. +..+++.+|+++++++.|++.+....- .+..++++++.+|+...... .++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 44799999999999998888763 346899999999999999998754321 13458999999999875432 358999
Q ss_pred EEECCCC------------chhHH-HHHhccccCcEEEEEEC
Q 022372 230 IHVGAAA------------PEIPQ-ALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~------------~~l~~-~l~~~LkpGG~Lvi~v~ 258 (298)
|+++..- .+..+ .+.+.|+|||++++..+
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9998432 12345 78889999999997654
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=92.74 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~ 224 (298)
.+ |++|||+-|=||.++.+.|.. |. .+|++||.|...++.|++|+..+++. ..++.++++|+.+.+. ..
T Consensus 216 ~~-GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g 288 (393)
T COG1092 216 AA-GKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRG 288 (393)
T ss_pred cc-CCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcC
Confidence 45 999999999999999999986 33 59999999999999999999998753 3678999999986442 23
Q ss_pred CCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 225 APYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 225 ~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+||+|+.+++. ..+...+.+.|+|||.+++.....
T Consensus 289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 489999999974 234477889999999999976543
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-08 Score=90.15 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEE-cCCC---CCC-CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHV-GDGR---KGW-PEF 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~-gD~~---~~~-~~~ 224 (298)
++.++||||||+|.+...++... +..+++|+|+++.+++.|++|+..+ ++. .+++++. .+.. ... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~-----~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN-----GAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc-----CcEEEEEccchhhhhhcccccC
Confidence 45799999999998888888764 4579999999999999999999987 554 5777764 2322 221 124
Q ss_pred CCccEEEECCCCc
Q 022372 225 APYDAIHVGAAAP 237 (298)
Q Consensus 225 ~~fD~Ii~~~~~~ 237 (298)
+.||+|+|++++.
T Consensus 188 ~~fDlivcNPPf~ 200 (321)
T PRK11727 188 ERFDATLCNPPFH 200 (321)
T ss_pred CceEEEEeCCCCc
Confidence 6899999999974
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-08 Score=91.29 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC-c--c-CCCCEEEEEcCCCCC-----C
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP-L--L-KEGSLSVHVGDGRKG-----W 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~-~--l-~~~~v~~~~gD~~~~-----~ 221 (298)
++.+|||+|||-|.-..-+... +. ..++|+|++.+.++.|+++.....-.. . . ..-...++.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999987755555543 22 699999999999999999984322100 0 0 012467888887642 2
Q ss_pred CC-CCCccEEEECCCCch----------hHHHHHhccccCcEEEEEECCCc
Q 022372 222 PE-FAPYDAIHVGAAAPE----------IPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 222 ~~-~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
.+ ..+||+|-+..++|. +.+++...|||||+++.++++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22 258999999998753 44788899999999999998764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-08 Score=84.02 Aligned_cols=109 Identities=24% Similarity=0.255 Sum_probs=79.0
Q ss_pred HHHHHHccCCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 141 CLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 141 ~l~~L~~~l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
+++.|...+++.. +|||||||||..+.++|+.+ |..+..--|.++......+..+...+..... ..+ .-|+..
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~--~P~---~lDv~~ 87 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR--PPL---ALDVSA 87 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccC--CCe---EeecCC
Confidence 4455544455555 49999999999999999997 6678999999999988888877776553111 122 234433
Q ss_pred C-C--C-----CCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 220 G-W--P-----EFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~-~--~-----~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
. + . ..++||+|++...++ .+++.+.+.|++||.|++
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2 2 1 235899999998874 455778899999999998
|
The function of this family is unknown. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-08 Score=80.60 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=83.5
Q ss_pred cccCCCccChHHHHHHHHHHHHccC--CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 125 AIGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 125 ~~g~~~~is~p~~~~~~l~~L~~~l--~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
.++-.+.++.|++.+.|+..+..-. -+|++++|+|||.|-++...+-. ++ ..|+|+|+++++++.+++|..+..+
T Consensus 20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~-e~vlGfDIdpeALEIf~rNaeEfEv- 96 (185)
T KOG3420|consen 20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KN-ESVLGFDIDPEALEIFTRNAEEFEV- 96 (185)
T ss_pred chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CC-ceEEeeecCHHHHHHHhhchHHhhh-
Confidence 3455677888999999998875422 36889999999999998554433 33 6899999999999999999987553
Q ss_pred CccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 203 PLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
++++++.|..+..+..+.||..+.+.++
T Consensus 97 ------qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 97 ------QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ------hhheeeeeccchhccCCeEeeEEecCCC
Confidence 5689999998877777899999999886
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=85.17 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=82.7
Q ss_pred ccccCCCccCh-HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 124 MAIGYNATISA-PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 124 ~~~g~~~~is~-p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
+..+.|+++.. |.+...+.+... +++++.|||+|.|||.+|..|.+.. .+|+++|+++.|++...++.+....+
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~ 106 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS 106 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc
Confidence 44566777744 677778888776 9999999999999999999999985 69999999999999999988664433
Q ss_pred CccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 203 PLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
+..++++||...... ..||.++++.+.
T Consensus 107 -----~kLqV~~gD~lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 -----GKLQVLHGDFLKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred -----ceeeEEecccccCCC--cccceeeccCCc
Confidence 678999999887532 359999998764
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=96.55 Aligned_cols=141 Identities=20% Similarity=0.298 Sum_probs=88.1
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
++..+++.+. ..++ +|||+-||.|.++..||+.+ .+|+|+|+++++++.|++|+..++. .|++++.++
T Consensus 185 l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~ 252 (352)
T PF05958_consen 185 LYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--
T ss_pred HHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEee
Confidence 4444555554 4444 89999999999999999886 6999999999999999999999876 689999876
Q ss_pred CCCCCC----------------CCCCccEEEECCCCchhHHHHHhcc-ccCcEEEEEECCCc--eeEEEEEEcCCCCeEE
Q 022372 217 GRKGWP----------------EFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIPVGNIF--QDLKVVDKNQDGSLSI 277 (298)
Q Consensus 217 ~~~~~~----------------~~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~ 277 (298)
+.+... ....+|+|+++++-..+.+.+.+.+ ++.=.+++++.... .++..+. .| +..
T Consensus 253 ~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~~L~---~~-y~~ 328 (352)
T PF05958_consen 253 AEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLKILK---EG-YKL 328 (352)
T ss_dssp SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHHHHH---CC-EEE
T ss_pred ccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHHHHh---hc-CEE
Confidence 542110 1136899999998654443333322 34445555554432 2333332 23 888
Q ss_pred EEeeeEEEeecccchh
Q 022372 278 WSETSVRYVPLTSRDA 293 (298)
Q Consensus 278 ~~l~~v~fvPl~~~~~ 293 (298)
+.+.++..+|-|...+
T Consensus 329 ~~v~~~DmFP~T~HvE 344 (352)
T PF05958_consen 329 EKVQPVDMFPQTHHVE 344 (352)
T ss_dssp EEEEEE-SSTTSS--E
T ss_pred EEEEEeecCCCCCcEE
Confidence 9999999999998876
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=77.94 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
..-++|||||+|..+..|++..++.....++|+++.+++..++.++.++ .+++.++.|...+... ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHhhhcc-CCccEEE
Confidence 5679999999999999999999888899999999999999888877655 4578899998888776 8999999
Q ss_pred ECCCC---------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 232 VGAAA---------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 232 ~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.+. ..++..+-+.|.|.|.+++..-
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 99874 1122344567889999998553
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=87.80 Aligned_cols=104 Identities=27% Similarity=0.347 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~ 226 (298)
..+|.+|||++++.|.-|..+++..+..+.+++.|+++..+...++++++.+. .++.+...|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 78999999999999999999999987789999999999999999999998654 68888887776541 22246
Q ss_pred ccEEEECCCC----------------------------chhHHHHHhcc----ccCcEEEEEEC
Q 022372 227 YDAIHVGAAA----------------------------PEIPQALIDQL----KPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~----------------------------~~l~~~l~~~L----kpGG~Lvi~v~ 258 (298)
||.|+++++. .++.+.+.+.+ ||||++|.+.-
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9999999875 12335677899 99999999774
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=79.80 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=69.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~ 223 (298)
...++.+|||+|||+|..+..+++.. ...+|+..|.++ .++..+.|++.++. ....++.+..-|..+.. ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccc
Confidence 35678899999999999999999984 337999999998 99999999987652 11256777776654321 22
Q ss_pred CCCccEEEECCCC------chhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+||+|+....+ +.+.+.+.+.|+++|.+++....
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 3589999888775 34557788899999997775543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-07 Score=77.53 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=83.6
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
++... +++|+|+|.|.-+..+|-.. |+.+++.+|.....+++.+.-....++ +|++++++.+.+ .....+|
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~f 116 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESF 116 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-E
T ss_pred hccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCc
Confidence 34444 89999999999999999985 778999999999999999888887554 799999999877 3344789
Q ss_pred cEEEECCCCc--hhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++-+..+ .+.+-+...|++||++++.-|..
T Consensus 117 d~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 117 DVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp EEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred cEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 9999998864 56688889999999999987753
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=84.02 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=84.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-CCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-APYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~-~~fD~Ii 231 (298)
.+||-||-|.|..+..+.+.. +-.+++.+|+++..++.|++.+...... ...++++++.+|+.+..... .+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~--~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGG--ADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccc--cCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 599999999999999999984 5579999999999999999998764422 11489999999998765433 3799999
Q ss_pred ECCCCc----------hhHHHHHhccccCcEEEEEECC
Q 022372 232 VGAAAP----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 232 ~~~~~~----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++..-+ +..+.+.+.|+++|+++.--++
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 997543 4558899999999999987433
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.3e-08 Score=87.83 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~~~ 226 (298)
..|.+|||+-|=+|.++.+.+.. |. .+|++||.|..+++.+++|+..+++ ...+++++.+|+.+.+. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~----~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGL----DLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-----CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHHHhcCCC
Confidence 35789999999999999987764 33 5899999999999999999998874 34689999999876432 2368
Q ss_pred ccEEEECCCC------------chhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAA------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||+|+++++. .++...+.++|+|||.|++....+
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9999999984 245577889999999998866543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-07 Score=81.59 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+..+|+|||.|+|.++..+++.. |+.+++..|. |+.++.+++ . ++++++.+|..+.++. +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f~~~P~---~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFFDPLPV---AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TTTCCSS---ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c---------cccccccccHHhhhcc---cc
Confidence 5666799999999999999999995 7789999997 888888877 1 7999999999855443 99
Q ss_pred EEEECCCCch--------hHHHHHhccccC--cEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPG--GRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpG--G~Lvi 255 (298)
+++....++. +.+++.+.|+|| |+|++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 9999998864 457889999999 99998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=84.62 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-----GWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-----~~~~ 223 (298)
.++++.++|+|||-|.-..-.-+. |- +.++|+|+.+..++.|+++.+.......-..-.+.|+.+|... ..+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 688899999999998776666554 22 6899999999999999998875332100001357899999874 2222
Q ss_pred CCC-ccEEEECCCCc----------hhHHHHHhccccCcEEEEEECCCc
Q 022372 224 FAP-YDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 224 ~~~-fD~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
..+ ||+|-|..+++ -...++.+.|||||+++.++++..
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 234 99998877763 244788899999999999999854
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.4e-07 Score=81.41 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.+.+..++++... +.+++.|||||+|.|.+|..|++.. .+|+++|+++.+++..++.... .+|++++
T Consensus 15 d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~~n~~vi 81 (259)
T COG0030 15 DKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAP--------YDNLTVI 81 (259)
T ss_pred CHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhccc--------ccceEEE
Confidence 3456778888886 7789999999999999999999985 5899999999999999887652 2799999
Q ss_pred EcCCCCCCCCCC-CccEEEECCCCc
Q 022372 214 VGDGRKGWPEFA-PYDAIHVGAAAP 237 (298)
Q Consensus 214 ~gD~~~~~~~~~-~fD~Ii~~~~~~ 237 (298)
++|+.....+.- .++.|++|-+..
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCCc
Confidence 999998655421 689999998863
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=87.49 Aligned_cols=92 Identities=18% Similarity=0.298 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. +.++..++|.+||.|..+..+++.+++.++|+|+|.++++++.|++++.. .++++++
T Consensus 4 ~pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i 73 (296)
T PRK00050 4 IPVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLV 73 (296)
T ss_pred ccccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEE
Confidence 3567788889887 78889999999999999999999976678999999999999999988754 1689999
Q ss_pred EcCCCCCC---CC-CCCccEEEECCC
Q 022372 214 VGDGRKGW---PE-FAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~---~~-~~~fD~Ii~~~~ 235 (298)
+++..+.. .. ..++|.|+.+.+
T Consensus 74 ~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 74 HGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred eCCHHHHHHHHHcCCCccCEEEECCC
Confidence 99987532 11 127999988876
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=84.07 Aligned_cols=107 Identities=28% Similarity=0.329 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CC-Cc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~-~f 227 (298)
+...+||-+|-|.|..+..+.+. .+-.+++.+|+++..++.|++.+...... +..++++++.+|+...... .+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCcc
Confidence 45689999999999999998876 34469999999999999999988664321 3458999999998763322 23 79
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++..- .+..+.+.+.|+|||++++..+.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 999998764 24558899999999999997643
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-07 Score=85.37 Aligned_cols=103 Identities=24% Similarity=0.275 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+|.+|+|.=+|-|+++..+|+.. . .+|+++|++|.+++..++|++.+++. +.+..++||..+..+..+.+|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~-~~V~A~diNP~A~~~L~eNi~LN~v~-----~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG-R-PKVYAIDINPDAVEYLKENIRLNKVE-----GRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC-C-ceEEEEecCHHHHHHHHHHHHhcCcc-----ceeeEEeccHHHhhhccccCC
Confidence 5679999999999999999999984 3 24999999999999999999998875 559999999998766657899
Q ss_pred EEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.|+.+.+. +++...+.+.+++||++.+...
T Consensus 259 rIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred EEEeCCCCcchhhHHHHHHHhhcCcEEEEEec
Confidence 99999876 5677888999999999988543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-07 Score=81.25 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=84.4
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
.+.-.+-..+...|....-+|.+|||+-||||.++.....+ |. .+|+.+|.++..+...++|++..+.. .+++
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i~~N~~~l~~~-----~~~~ 95 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKIIKKNLEKLGLE-----DKIR 95 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G-----GGEE
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ccee
Confidence 33344555566666633146899999999999999887776 33 59999999999999999999987654 4689
Q ss_pred EEEcCCCCCCC----CCCCccEEEECCCCch------hHHHHH--hccccCcEEEEEECCC
Q 022372 212 VHVGDGRKGWP----EFAPYDAIHVGAAAPE------IPQALI--DQLKPGGRMVIPVGNI 260 (298)
Q Consensus 212 ~~~gD~~~~~~----~~~~fD~Ii~~~~~~~------l~~~l~--~~LkpGG~Lvi~v~~~ 260 (298)
++..|....+. ...+||+|+.+++... +.+.+. .+|+++|.+++.....
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99999664331 2368999999999753 223444 6789999999977543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-07 Score=89.33 Aligned_cols=97 Identities=27% Similarity=0.278 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 152 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+..|+|||||+|-++...++.. +...+|+++|.++.++...+++++.+++. ++|+++++|.++...+ .+.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-----~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-----DKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-----TTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-----CeEEEEeCcccCCCCC-Ccee
Confidence 4679999999999986665542 23369999999999998887777777665 7899999999886554 5899
Q ss_pred EEEECCC----C----chhHHHHHhccccCcEEE
Q 022372 229 AIHVGAA----A----PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~----~----~~l~~~l~~~LkpGG~Lv 254 (298)
+|++-.. . ++......+.|||||.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9977542 1 234456668999998875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=85.61 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+-.+..|||+|||+|-++..-|+. |. .+|+++|.+.-+ +.|++.+..+++. ..++++.|.+.+...+.++.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N~~~-----~ii~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDNGLE-----DVITVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhcCcc-----ceEEEeecceEEEecCcccee
Confidence 556889999999999999999998 44 699999977655 9999999888775 568999998887433357899
Q ss_pred EEEECCCC-----chhHHHH----HhccccCcEEE
Q 022372 229 AIHVGAAA-----PEIPQAL----IDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~~-----~~l~~~l----~~~LkpGG~Lv 254 (298)
+|++--.- +.+.+.+ =+.|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99887543 2222222 26899999885
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=83.65 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++. .++|+|||+|..+..++... .+|+|+|++++|++.|++........ ........+........++.|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~-----t~~~ms~~~~v~L~g~e~SVD 102 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCH-----TPSTMSSDEMVDLLGGEESVD 102 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccccc-----CCccccccccccccCCCccee
Confidence 3444 78999999998888888886 68999999999999998754221110 112222222222222347999
Q ss_pred EEEECCCCc-----hhHHHHHhccccCc-EEEE
Q 022372 229 AIHVGAAAP-----EIPQALIDQLKPGG-RMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi 255 (298)
+|++..+++ ...+.+.++||+.| .+.+
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 999998875 45588999998766 5555
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-07 Score=80.66 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHH-HHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS-SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~-A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++.+|||+|||+|+++..+++. |. .+|+++|+++.++.. .+++.+- ..++..|++. -+..+.+++...+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~~l~~~~~v----~~~~~~ni~~--~~~~~~~~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAEKLRQDERV----KVLERTNIRY--VTPADIFPDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHhcCCCe----eEeecCCccc--CCHhHcCCCceeee
Confidence 36789999999999999999997 43 689999999987765 2222110 0012233331 11112222334678
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+..... +...+.+.|+| |.+++.+-
T Consensus 146 vsfiS~~~--~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 146 VSFISLIS--ILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred EEEeehHh--HHHHHHHHhCc-CeEEEEcC
Confidence 77665554 78899999999 88888663
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=77.49 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=76.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~ 224 (298)
.+++|.+||-+|+.+|....+++..+++++.|+++|+++...+..-.-.++. +|+-.+.+|+..... --
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--------TTEEEEES-TTSGGGGTTTS
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--------CceeeeeccCCChHHhhccc
Confidence 5789999999999999999999999998999999999995544433222221 799999999986321 12
Q ss_pred CCccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+..|+|+.+-+.++ +..++...||+||.+++.+-
T Consensus 142 ~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp --EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 57999999988754 34677789999999999773
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-07 Score=81.16 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcc-CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~~~-l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
++..++-...-. .+...+||-+|.|.|.....+.+. + .+|+-+|++++.++.+++.+....- .+..++++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~ 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh
Confidence 344444443311 234489999999999999999987 2 4999999999999999997765332 366688988862
Q ss_pred CCCCCCCCCCCccEEEECCCC-chhHHHHHhccccCcEEEEEECCC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~-~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+ ...++||+|+++... ++..+.+.+.|+|||.++...+..
T Consensus 132 -~~~--~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 132 -LLD--LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -hhh--ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCc
Confidence 111 112689999999554 466789999999999999955443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=81.06 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
...++||||+|.|..|..++..+ .+|++.|.|+.|..+.++ .+ .+++..+-.. ....+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg---------~~vl~~~~w~--~~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KG---------FTVLDIDDWQ--QTDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CC---------CeEEehhhhh--ccCCceEEE
Confidence 34689999999999999999998 589999999999655443 22 2333333211 123589999
Q ss_pred EECCCCc------hhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAAAP------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~~~------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.|-..+. .+.+++++.|+|+|++++.+--+
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 9988874 46689999999999999976443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=71.38 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=74.3
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.+.+.+. ...+.+|||||||+|. .+..|++. | ..|+++|+++..++.++++ .++++.+|..
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf 68 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKL-------------GLNAFVDDLF 68 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHh-------------CCeEEECcCC
Confidence 3444443 3356899999999997 77888876 3 6999999999998888654 3578899988
Q ss_pred CCCCC-CCCccEEEECCCCchhHHHHHhccc-cCcEEEE-EECC
Q 022372 219 KGWPE-FAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVI-PVGN 259 (298)
Q Consensus 219 ~~~~~-~~~fD~Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi-~v~~ 259 (298)
+...+ -..+|+|++.-+.+++...+.++-| -|.-+++ |+++
T Consensus 69 ~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 75433 2579999999999988877776554 3444444 5544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.7e-07 Score=82.64 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=83.0
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV------GPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~------g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
|+..+..++...|.+.+. ..++.+|+|-+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+.
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~- 102 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI- 102 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-
Confidence 344444556666777775 7778899999999999988887743 2347899999999999999988765443
Q ss_pred CccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCch---------------------------hHHHHHhccccCcEE
Q 022372 203 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPE---------------------------IPQALIDQLKPGGRM 253 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~~---------------------------l~~~l~~~LkpGG~L 253 (298)
...+..+..+|....... ...||+|+++++.-. ....+.+.||+||++
T Consensus 103 ---~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 103 ---DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp ---HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ---ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 223456888887754332 368999999987521 225677899999998
Q ss_pred EEEECC
Q 022372 254 VIPVGN 259 (298)
Q Consensus 254 vi~v~~ 259 (298)
++-+++
T Consensus 180 ~~Ilp~ 185 (311)
T PF02384_consen 180 AIILPN 185 (311)
T ss_dssp EEEEEH
T ss_pred eEEecc
Confidence 886654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=77.22 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=58.8
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEE
Q 022372 180 VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRM 253 (298)
Q Consensus 180 ~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~L 253 (298)
+|+|+|++|++.|+++...... -...+++++++|+.+...+.++||+|++..++++ ..+++++.|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999999999877653221 0125799999999887666679999999988764 347899999999999
Q ss_pred EEEE
Q 022372 254 VIPV 257 (298)
Q Consensus 254 vi~v 257 (298)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8753
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-07 Score=81.38 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=70.1
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC----CCCCCCCCc
Q 022372 154 HALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR----KGWPEFAPY 227 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~--~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~----~~~~~~~~f 227 (298)
++||||||.|.....+.+. .++ -+|++.|.++.+++..+++..... .++....-|.. ...++.+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCcc
Confidence 7999999999999888887 354 689999999999999988754322 23333333333 334455789
Q ss_pred cEEEECCCCch--------hHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPE--------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 255 (298)
|.|++..++.. ..+++.++|||||.|++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEE
Confidence 99977766533 44789999999999998
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.9e-07 Score=81.46 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=91.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+..|||+|||+|.++...++. |. .+|+++|.+ +|.+.|++-++.+.+. +++.++.|...+...+ ++.|+|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEAS-~MAqyA~~Lv~~N~~~-----~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEAS-EMAQYARKLVASNNLA-----DRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEehh-HHHHHHHHHHhcCCcc-----ceEEEccCccccccCc-hhccEE
Confidence 4678999999999999998887 44 699999964 7889999888776554 7899999998875544 689999
Q ss_pred EECCCC-----chhHH---HHHhccccCcEEEEEECCCc-------ee-EEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 231 HVGAAA-----PEIPQ---ALIDQLKPGGRMVIPVGNIF-------QD-LKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 231 i~~~~~-----~~l~~---~l~~~LkpGG~Lvi~v~~~~-------q~-~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
++-+.- +.+.+ ...+.|||.|.++=++++-. +. ...+.| ..-|-.....+|...||..+.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nk--AnFWyQq~fyGVdLt~L~g~a 323 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNK--ANFWYQQNFYGVDLTPLYGSA 323 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhh--hhhhhhhccccccchhhhhhh
Confidence 988753 23332 34589999999987666421 00 111111 233444556677777765543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-07 Score=77.85 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=56.3
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--C-CccEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYDAI 230 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~-~fD~I 230 (298)
.|+|+.||.|..+..+|+.+ .+|+++|+++..++.|+.|++-.+.. ++++++++|..+..... . .||+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~-----~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA-----DNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G-----GGEEEEES-HHHHGGGB------SEE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCCHHHHHhhccccccccEE
Confidence 68999999999999999986 68999999999999999999988764 79999999988643221 1 28999
Q ss_pred EECCCC
Q 022372 231 HVGAAA 236 (298)
Q Consensus 231 i~~~~~ 236 (298)
+.+++.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 999863
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.3e-07 Score=79.09 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=84.2
Q ss_pred CccChHHHHHH--HHHHHHccC----CCCCEEEEEcCCCcHHHHHH-HHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 130 ATISAPHMHAT--CLQLLEENL----KPGMHALDIGSGTGYLTACF-ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 130 ~~is~p~~~~~--~l~~L~~~l----~~g~~VLDiG~GsG~~t~~L-a~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
.+++.+.+... ++..+.... ....++||.|+|-|+.|..+ .+.+ .+|..+|..+..++.|++.+....
T Consensus 28 ~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~~~-- 102 (218)
T PF05891_consen 28 GHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGKDN-- 102 (218)
T ss_dssp GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGG--
T ss_pred CCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcccC--
Confidence 36777776654 344332111 23468999999999999755 4444 699999999999999998764411
Q ss_pred CccCCCCE-EEEEcCCCCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEECCCceeEEEEEEcCCC
Q 022372 203 PLLKEGSL-SVHVGDGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDG 273 (298)
Q Consensus 203 ~~l~~~~v-~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g 273 (298)
.++ ++.+....+..|+..+||+|.+.-.+-++ ++.+.+.|+|+|.+++--+........+++. |+
T Consensus 103 -----~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~-Ds 176 (218)
T PF05891_consen 103 -----PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE-DS 176 (218)
T ss_dssp -----CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT-TT
T ss_pred -----CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc-cC
Confidence 343 44444444444555799999988877544 4678889999999999555444444455543 55
Q ss_pred CeEE
Q 022372 274 SLSI 277 (298)
Q Consensus 274 ~~~~ 277 (298)
++++
T Consensus 177 SvTR 180 (218)
T PF05891_consen 177 SVTR 180 (218)
T ss_dssp EEEE
T ss_pred eeec
Confidence 5655
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=80.67 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
+++|.+|||..+..|.-|.++|.++...+.+++.|.+...+...+.|+.+.+. .+..+...|..+.. .. +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 78999999999999999999999998889999999999999999999988654 68888888887532 12 3
Q ss_pred CccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 226 PYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+||.|+.+++.. ++...+.+.+++||+||.+.-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 799999998752 223456789999999999664
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.3e-06 Score=69.87 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=87.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
.+.-.+-..+-..+...--.|.++||+=+|||.++...+.+. . .+++.+|.+...+...++|++..+.. .+.+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A-~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~ 96 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-A-ARVVFVEKDRKAVKILKENLKALGLE-----GEAR 96 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-C-ceEEEEecCHHHHHHHHHHHHHhCCc-----cceE
Confidence 333334444555554211457899999999999998888873 3 69999999999999999999886644 6888
Q ss_pred EEEcCCCCCC---CCCCCccEEEECCCCch-hH----HH----HHhccccCcEEEEEECC
Q 022372 212 VHVGDGRKGW---PEFAPYDAIHVGAAAPE-IP----QA----LIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 212 ~~~gD~~~~~---~~~~~fD~Ii~~~~~~~-l~----~~----l~~~LkpGG~Lvi~v~~ 259 (298)
++..|..... ...++||+|+.+++..+ +. .. -..+|+|+|.+++....
T Consensus 97 ~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 97 VLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 8888887431 22235999999999862 22 11 23579999999996653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=84.40 Aligned_cols=102 Identities=22% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCCCCcc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~~~fD 228 (298)
.+..+||||||.|.++..+|+. .|+..++|+|+....+..+.++..+.++ .|+.++.+|... ...+.+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 4568999999999999999999 5778999999999999999888776544 689888887642 123347899
Q ss_pred EEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|+.+.+-+ ...+.+.+.|||||.+.+-...
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 999998742 3457889999999999986654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-06 Score=74.19 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC-ccEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAI 230 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~-fD~I 230 (298)
+.+++|||+|.|.-+..+|-. .|+.+|+-+|.....+++.+.-..+.+ .+|++++++.+.+.... .. ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~------L~nv~i~~~RaE~~~~~-~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELG------LENVEIVHGRAEEFGQE-KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhC------CCCeEEehhhHhhcccc-cccCcEE
Confidence 589999999999999999965 477789999999999999988887754 47999999998776543 23 9999
Q ss_pred EECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+-+.. ..+.+-+..++|+||.++...+
T Consensus 140 tsRAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred EeehccchHHHHHHHHHhcccCCcchhhhH
Confidence 998875 4667888899999999875443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=83.35 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=88.8
Q ss_pred ccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC---C--------------------------------
Q 022372 131 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---P-------------------------------- 175 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---~-------------------------------- 175 (298)
....+.+.+.++.... ..+++..++|.+||+|.+.+..|.+.. |
T Consensus 171 Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 171 APLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3345666677776543 235678999999999999877765411 1
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCc----------
Q 022372 176 ------QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP---------- 237 (298)
Q Consensus 176 ------~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~---------- 237 (298)
..+++|+|+++.+++.|++|+...++. +.+++.++|..+.... .++||+|++|++.-
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~-----~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~ 324 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVA-----ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALI 324 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCC-----cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHH
Confidence 136999999999999999999998764 5789999998775432 24699999999861
Q ss_pred hhHHHHHh---ccccCcEEEEEECCC
Q 022372 238 EIPQALID---QLKPGGRMVIPVGNI 260 (298)
Q Consensus 238 ~l~~~l~~---~LkpGG~Lvi~v~~~ 260 (298)
++.+.+.+ ...+|+++++-.++.
T Consensus 325 ~lY~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 325 ALYSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 12223333 334899998877653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.6e-06 Score=80.88 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=71.7
Q ss_pred CCCccChHHHHHHHHHHHHccCC-----CCCEEEEEcCCCcHHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHH
Q 022372 128 YNATISAPHMHATCLQLLEENLK-----PGMHALDIGSGTGYLTACFALMVGP-------QGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~-----~g~~VLDiG~GsG~~t~~La~~~g~-------~~~V~giD~s~~~l~~A~~~ 195 (298)
.|+..+.+.+...|++.+..... .+.+|||.|||+|.+...+++.+.. ...++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 45666777788888877642222 3468999999999999888876521 24789999999999999998
Q ss_pred HHHhccCCccCCCCEEEEEcCCCCC----C-CCCCCccEEEECCCC
Q 022372 196 IEKSAAAPLLKEGSLSVHVGDGRKG----W-PEFAPYDAIHVGAAA 236 (298)
Q Consensus 196 ~~~~~~~~~l~~~~v~~~~gD~~~~----~-~~~~~fD~Ii~~~~~ 236 (298)
+...+. ..+.+..+|.... . ...+.||+|+.|++.
T Consensus 83 l~~~~~------~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFAL------LEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcCC------CCceeeecccccccccccccccCcccEEEeCCCc
Confidence 876431 1234454543321 1 112579999999885
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-06 Score=80.50 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=81.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~Ii 231 (298)
.+|||+.||+|..+..++...+.-.+|+++|+++++++.+++|++.++. .++++.++|+...... ...||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 5899999999999999998742225899999999999999999988654 4788999988754332 25799999
Q ss_pred ECCCCc--hhHHHHHhccccCcEEEEEEC
Q 022372 232 VGAAAP--EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 232 ~~~~~~--~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.++.-. .+.+.+.+.+++||.|.++..
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEec
Confidence 998432 566888899999999999743
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=74.68 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHHcC---C-CcEEEEEeCCHHHHHHHHHHH--------------HHhccC---Ccc
Q 022372 151 PGMHALDIGSGTGY----LTACFALMVG---P-QGRAVGVEHIPELVVSSIQNI--------------EKSAAA---PLL 205 (298)
Q Consensus 151 ~g~~VLDiG~GsG~----~t~~La~~~g---~-~~~V~giD~s~~~l~~A~~~~--------------~~~~~~---~~l 205 (298)
+.-+|+.+||++|. ++..+.+..+ + .-+++|.|+++.+++.|++-. +++-.. ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999995 3344444221 1 358999999999999997632 111000 000
Q ss_pred C-----CCCEEEEEcCCCCCCCCCCCccEEEECCCC--------chhHHHHHhccccCcEEEEEE
Q 022372 206 K-----EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 206 ~-----~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
. ..+|+|...|..+..+..+.||+|+|-.++ ..+.+.+++.|+|||.|++--
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0 157999999988844555899999999987 346688899999999999843
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=82.38 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
++.++..+-+.+. ++++..+||+.||||.++..+|+.+ .+|+|+|++++.++.|++|...++. .|.+|+
T Consensus 368 aevLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi 436 (534)
T KOG2187|consen 368 AEVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI------SNATFI 436 (534)
T ss_pred HHHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc------cceeee
Confidence 3445555666665 8888999999999999999999987 6999999999999999999999877 699999
Q ss_pred EcCCCCCCCCC-----CCcc-EEEECCCCchhH----HHHHhccccCcEEEEEECCCce--e-EEE----EEEcCCCCeE
Q 022372 214 VGDGRKGWPEF-----APYD-AIHVGAAAPEIP----QALIDQLKPGGRMVIPVGNIFQ--D-LKV----VDKNQDGSLS 276 (298)
Q Consensus 214 ~gD~~~~~~~~-----~~fD-~Ii~~~~~~~l~----~~l~~~LkpGG~Lvi~v~~~~q--~-~~~----~~~~~~g~~~ 276 (298)
+|.+.+..+.. ++=+ +++++.+-..+. +.+.+.-.+.-.+++++....+ . ..+ ..+...|.|.
T Consensus 437 ~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr 516 (534)
T KOG2187|consen 437 VGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFR 516 (534)
T ss_pred ecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccc
Confidence 99655533221 2335 556666543332 3333333366666666654321 1 111 1233355677
Q ss_pred EEEeeeEEEeecccch
Q 022372 277 IWSETSVRYVPLTSRD 292 (298)
Q Consensus 277 ~~~l~~v~fvPl~~~~ 292 (298)
.....+|..+|-|+.-
T Consensus 517 ~~~~~~VDlfP~T~h~ 532 (534)
T KOG2187|consen 517 LVKAVGVDLFPHTPHC 532 (534)
T ss_pred eeeeeecccCCCCCcC
Confidence 8888888888887653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-06 Score=77.10 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCcH----HHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHH--------------hc----------
Q 022372 152 GMHALDIGSGTGY----LTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEK--------------SA---------- 200 (298)
Q Consensus 152 g~~VLDiG~GsG~----~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~--------------~~---------- 200 (298)
.-+|+..||+||- ++..+.+..+. +.+|+|+|+++.+++.|++-.-. +-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 33444453321 35899999999999999875210 00
Q ss_pred --cCCccCCCCEEEEEcCCCCC-CCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 201 --AAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 201 --~~~~l~~~~v~~~~gD~~~~-~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+.+ ...|+|...|..+. ++..+.||+|+|..++. .+.+.+.+.|+|||.|++--.
T Consensus 196 ~~v~~~l-r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQEL-ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHH-HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 00001 15678888888773 33347899999987753 455788999999999987443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.1e-06 Score=72.04 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc---CCccCCCCE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLLKEGSL 210 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~---~~~l~~~~v 210 (298)
.|.....+++.+. +++++.++|+|||.|......|...+ -.+.+|||+.+...+.|++....... .......++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455677788776 88999999999999998888876653 25799999999999888765433211 011233678
Q ss_pred EEEEcCCCCCCCC---CCCccEEEECCCC--chhH---HHHHhccccCcEEEE
Q 022372 211 SVHVGDGRKGWPE---FAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 211 ~~~~gD~~~~~~~---~~~fD~Ii~~~~~--~~l~---~~l~~~LkpGG~Lvi 255 (298)
++..+|..+.... -..-|+|+++... +.+. .+....||+|-++|-
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 8889987653210 0246999998765 2333 445567888877764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=73.48 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=74.3
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. +.++..|||+|+|.|.+|..|++.. .+++++|+++.+++..++++.. .++++
T Consensus 13 L~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~--------~~~~~ 79 (262)
T PF00398_consen 13 LVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS--------NPNVE 79 (262)
T ss_dssp EEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT--------CSSEE
T ss_pred eCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh--------cccce
Confidence 456778888999887 7789999999999999999999985 6999999999999999887642 27999
Q ss_pred EEEcCCCCCCCCC---CCccEEEECCCC
Q 022372 212 VHVGDGRKGWPEF---APYDAIHVGAAA 236 (298)
Q Consensus 212 ~~~gD~~~~~~~~---~~fD~Ii~~~~~ 236 (298)
++.+|+.+..... .....|+.+.+.
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred eeecchhccccHHhhcCCceEEEEEecc
Confidence 9999998754332 245677887776
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.4e-05 Score=71.35 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCcH----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH-----hcc---------CCc----c
Q 022372 152 GMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEK-----SAA---------APL----L 205 (298)
Q Consensus 152 g~~VLDiG~GsG~----~t~~La~~~g~----~~~V~giD~s~~~l~~A~~~~~~-----~~~---------~~~----l 205 (298)
.-+|+-+||+||- ++..+.+.++. .-+++|.|++...++.|+.-.-. .++ ... .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999993 45555565532 46899999999999999753211 111 000 0
Q ss_pred C-----CCCEEEEEcCCCCCCCCCCCccEEEECCCC--------chhHHHHHhccccCcEEEE
Q 022372 206 K-----EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 206 ~-----~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi 255 (298)
. ...|.|...|.....+..+.||+|+|-.++ .++.+.++..|+|||.|++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 0 146788888887766444789999999987 4577889999999999997
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-07 Score=71.24 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred EEEcCCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEE
Q 022372 156 LDIGSGTGYLTACFALMVGPQG--RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 231 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~--~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii 231 (298)
||+|+..|+.+..+++.+.+.. +++++|..+. .+.+++.+++.+.. .+++++.++..+..+. .++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-----~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-----DRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-----CeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6999999999999998875544 7999999996 33444444443332 5799999998653221 36899999
Q ss_pred ECCCC--c---hhHHHHHhccccCcEEEE
Q 022372 232 VGAAA--P---EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 232 ~~~~~--~---~l~~~l~~~LkpGG~Lvi 255 (298)
.++.- + .-.+.+.+.|+|||.+++
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99973 2 234678889999999986
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-05 Score=71.54 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=93.9
Q ss_pred cCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC---C----------------------------
Q 022372 127 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---P---------------------------- 175 (298)
Q Consensus 127 g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---~---------------------------- 175 (298)
..+.......+.+.|+.+.. -+++..++|-=||+|.+.+..|.+.. |
T Consensus 169 ~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 169 YDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred cCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 33444555666666666554 66778999999999999988887742 1
Q ss_pred Cc-------EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC------c-----
Q 022372 176 QG-------RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------P----- 237 (298)
Q Consensus 176 ~~-------~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~------~----- 237 (298)
.. .++|.|+++.+++.|+.|....++. +.|.|.++|+.....+.+.+|+|++|++. +
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~-----d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~ 321 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVG-----DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAK 321 (381)
T ss_pred HHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC-----ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHH
Confidence 11 3789999999999999999998886 78999999998765544789999999985 1
Q ss_pred ---hhHHHHHhccccCcEEEEEECC
Q 022372 238 ---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 238 ---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++.+.+.+.++--++.+++...
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHHHHHHHHhcCCceEEEEccH
Confidence 1224555677777788875543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.3e-06 Score=72.27 Aligned_cols=100 Identities=25% Similarity=0.362 Sum_probs=80.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHH----HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE----LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~----~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
+++||.+||-+|+++|+.....+..++|++.|+++|.+.. ++..|+++ .|+.-+..|+.....-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------TNIIPIIEDARHPAKY 220 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------CCceeeeccCCCchhe
Confidence 6899999999999999999999999999999999999974 45555443 6888888898764321
Q ss_pred ---CCCccEEEECCCCchhH----HHHHhccccCcEEEEEECC
Q 022372 224 ---FAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ---~~~fD~Ii~~~~~~~l~----~~l~~~LkpGG~Lvi~v~~ 259 (298)
-+..|+||++-+.+... -+..-.||+||-+++++-.
T Consensus 221 RmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 221 RMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 14679999998876433 4667789999999998854
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.7e-05 Score=61.80 Aligned_cols=105 Identities=27% Similarity=0.388 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+..+|+|+|||.||++..|+..+ .++.+|+++|.++..++.+.++.++.... + ..++.+..++...... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--L-EKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--h-hccchhhccchhhhcc-cCC
Confidence 567899999999999999999943 24579999999999999999988775521 0 1455666655433222 245
Q ss_pred ccEEEECCCCchhHHHHH-hccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIPQALI-DQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~-~~LkpGG~Lvi~v~ 258 (298)
.++++.--+.-.+...+. ..++++-..++.+|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vp 132 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLFIRPNARFLVLVP 132 (141)
T ss_pred CeEEEEeecccchHHHHHHHHHHcCCCEEEEcC
Confidence 566644433333322222 22236555555444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=67.19 Aligned_cols=95 Identities=27% Similarity=0.340 Sum_probs=73.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++..|+|+|+..|..+..+++.+++++.|+++|+.|-. ..++|.++++|.....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHH
Confidence 46789999999999999999999999888889999997631 1256999999988632
Q ss_pred --CCCCCccEEEECCCC--------ch---------hHHHHHhccccCcEEEEEECC
Q 022372 222 --PEFAPYDAIHVGAAA--------PE---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~--------~~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....++|+|+++.+. ++ .++-..+.|+|||.+++.+-.
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 222457999999874 22 124456799999999997743
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=69.10 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=65.5
Q ss_pred EEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECC
Q 022372 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 234 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~ 234 (298)
|.||||--||+...|.+. +...+++++|+++..++.|++++.+.++. ++++++.+|+.....+.+..|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-----~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE-----DRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T-----TTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc-----ccEEEEECCcccccCCCCCCCEEEEec
Confidence 689999999999999998 45568999999999999999999998875 789999999988766644478886665
Q ss_pred CCc----hhHHHHHhccccCcEEEE
Q 022372 235 AAP----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 235 ~~~----~l~~~l~~~LkpGG~Lvi 255 (298)
.-- ++.++....++..-++++
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEE
Confidence 432 333444444444445554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.7e-05 Score=68.62 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=65.2
Q ss_pred CEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~-~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+|+=||||. -..+..+++..+++..|+++|+++++++.+++-++ ..++. .++.++.+|+.....+...||+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-----~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-----KRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-----CCeEEEecchhccccccccCCEE
Confidence 5999999998 45557777665666789999999999999998776 33433 68999999987544344689999
Q ss_pred EECCCC-------chhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAA-------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~-------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+..+-. .++.+++.+.++||.++++=..+
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 888765 36789999999999999984443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=65.76 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCC-CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPE-FAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~-~~~ 226 (298)
..-+||||.||.|....-.....+. ..++...|.++.-++..++.+++.++. +-++|.++|+.+. ... ...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----DIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----cceEEEecCCCCHhHhhccCCC
Confidence 4469999999999876666655432 258999999999999999999998874 4459999999873 221 234
Q ss_pred ccEEEECCCCchhH---------HHHHhccccCcEEEEEE
Q 022372 227 YDAIHVGAAAPEIP---------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 227 fD~Ii~~~~~~~l~---------~~l~~~LkpGG~Lvi~v 257 (298)
.|++++.+..+-++ ..+.+.+.|||.||.+-
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 79998888764332 45678899999999854
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=63.67 Aligned_cols=113 Identities=27% Similarity=0.321 Sum_probs=84.7
Q ss_pred HHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
+.+.++.-|. ..+++|.+||=+|+.+|....+++..++ .+.++++|+++......-....+. +|+--+.+
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--------~Ni~PIL~ 131 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--------PNIIPILE 131 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--------CCceeeec
Confidence 3444444443 2478999999999999999999999986 689999999997765554444331 68888999
Q ss_pred CCCCCCCC---CCCccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWPE---FAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~~---~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+.....- -+..|+|+.+-+.+. +..++...||+||.+++.+-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 98864321 146899999988753 34778889999998888663
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.9e-05 Score=67.79 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
+..+++.+. ..+++..|-|+|||.+.++..+. ...+|+..|... .|-.+...|.
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva---------------------~n~~Vtacdi 113 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA---------------------PNPRVTACDI 113 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS----------------------SSTTEEES-T
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC---------------------CCCCEEEecC
Confidence 456677775 24456799999999998874433 224799999753 2224677898
Q ss_pred CCCCCCCCCccEEEECCCC-----chhHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~v 257 (298)
...+.++++.|+++...++ .....++.|.|||||.|.|.-
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 8877777999999887776 456799999999999999854
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=67.44 Aligned_cols=92 Identities=28% Similarity=0.363 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--------CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--------GWP 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--------~~~ 222 (298)
++.+|||+||++|..+.++.+..++.++|+|+|+.+. .. ..++..+.+|..+ ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc------ccceeeeecccchhhHHHhhhhhc
Confidence 3489999999999999999998656689999999876 00 0344454555432 111
Q ss_pred --CCCCccEEEECCCCc--------h---------hHHHHHhccccCcEEEEEECC
Q 022372 223 --EFAPYDAIHVGAAAP--------E---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 --~~~~fD~Ii~~~~~~--------~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+||+|+++.+.. + ...-+.+.|||||.+++-+-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 125899999999421 1 112345679999999986643
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.6e-05 Score=69.23 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. +++|..++|.-+|.|..+..+++.+++ ++|+|+|.++.+++.+++++.... .++.++
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~~~i 74 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRVVLI 74 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcEEEE
Confidence 4667888889887 788899999999999999999998754 899999999999999999886532 589999
Q ss_pred EcCCCCCC-----CCCCCccEEEECCC
Q 022372 214 VGDGRKGW-----PEFAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~-----~~~~~fD~Ii~~~~ 235 (298)
+++..+.. ....++|.|+.+.+
T Consensus 75 ~~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 75 HDNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred eCCHHHHHHHHHhcCCCcccEEEEecc
Confidence 98877521 12246999988875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=66.40 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=73.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
+.+.|+|+|+|-++...|+.. .+|+++|.+|...+.|.+|+.-.+. .|+.++.+|+++... ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccccccc--cccceeHH
Confidence 689999999999999999874 6999999999999999999855443 799999999988654 35688866
Q ss_pred CCC--------CchhHHHHHhccccCcEEEE
Q 022372 233 GAA--------APEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 233 ~~~--------~~~l~~~l~~~LkpGG~Lvi 255 (298)
-.- .-.+.+.+.+.||..+.++=
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 542 12345778888998888763
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00031 Score=65.75 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=73.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE--EEcCCCCCC-
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRKGW- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~--~~gD~~~~~- 221 (298)
.+.++..++|+|||+|.-+..|.+.+.+ ..+++++|+|.++++.+.+++..... +.+.+ +.+|..++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGTYDDGLA 146 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEecHHHHHh
Confidence 4677889999999999988877766532 35799999999999999998873221 44544 788776531
Q ss_pred --CC---CCCccEEEECC-CC--------chhHHHHHh-ccccCcEEEEEEC
Q 022372 222 --PE---FAPYDAIHVGA-AA--------PEIPQALID-QLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~---~~~fD~Ii~~~-~~--------~~l~~~l~~-~LkpGG~Lvi~v~ 258 (298)
+. .....+++.-+ .+ ..+.+++.+ .|+|||.|++-+.
T Consensus 147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 11 12345554333 33 134477888 9999999999664
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=68.74 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc-CCccCCCCEEEEEcCCCCCCC-CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLKEGSLSVHVGDGRKGWP-EFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~-~~~l~~~~v~~~~gD~~~~~~-~~~~ 226 (298)
++.-.+||-+|.|.|.-...+.+. +.-.+++-+|.+|++++.++++..-... ...+..++++++..|+.+... ..+.
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 345579999999999999998886 3357999999999999999854422111 234666899999999876432 2358
Q ss_pred ccEEEECCCCch-----------hHHHHHhccccCcEEEEEECCCc
Q 022372 227 YDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 227 fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
||.|+++..-+. ...-+.+.|+++|.+++.-+.+.
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 999999976432 23567789999999999776643
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.83 E-value=7e-05 Score=61.14 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=48.5
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.+||+|||.|+.+..+++. ++..+++++|.++.+.+.++++++.++. .++.++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeee
Confidence 4899999999999999988 4667999999999999999999987654 45777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00017 Score=63.30 Aligned_cols=82 Identities=28% Similarity=0.384 Sum_probs=71.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++.+.++.||||--+|+..+|.+. ++..++++.|+++..++.|.+++.++++. +++++..+|+...+...+.+
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~-----~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS-----ERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc-----ceEEEeccCCccccCccCCc
Confidence 4567778999999999999999998 57789999999999999999999998876 78999999998777665689
Q ss_pred cEEEECCC
Q 022372 228 DAIHVGAA 235 (298)
Q Consensus 228 D~Ii~~~~ 235 (298)
|+|+..+.
T Consensus 87 d~ivIAGM 94 (226)
T COG2384 87 DVIVIAGM 94 (226)
T ss_pred CEEEEeCC
Confidence 99876665
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00042 Score=54.15 Aligned_cols=99 Identities=31% Similarity=0.357 Sum_probs=67.4
Q ss_pred EEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCC-CCccEEE
Q 022372 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF-APYDAIH 231 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~-~~fD~Ii 231 (298)
++|+|||+|..+ .+++.......++++|.++.+++.++..... ... ..+.+..++... ..... ..||.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999987 5555432213899999999999985554432 110 116777777665 22222 3799994
Q ss_pred ECCCC-----chhHHHHHhccccCcEEEEEECCC
Q 022372 232 VGAAA-----PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 232 ~~~~~-----~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..... .....++.+.|+|+|.+++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44433 456688999999999999876653
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.9e-05 Score=66.60 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=70.8
Q ss_pred HHHHHHccCCCCC--EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC---CCEEEEEc
Q 022372 141 CLQLLEENLKPGM--HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE---GSLSVHVG 215 (298)
Q Consensus 141 ~l~~L~~~l~~g~--~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~---~~v~~~~g 215 (298)
+..... +++|. +|||.-+|+|..+..++.+. ++|+++|.++......++++++......+.. .+++++++
T Consensus 78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 445554 77877 99999999999999999883 5799999999999999999887422111221 57999999
Q ss_pred CCCCCCCC-CCCccEEEECCCCc
Q 022372 216 DGRKGWPE-FAPYDAIHVGAAAP 237 (298)
Q Consensus 216 D~~~~~~~-~~~fD~Ii~~~~~~ 237 (298)
|....... ...||+|+.+++++
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCC
Confidence 98764432 23799999999874
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=67.36 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=73.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~ 225 (298)
.++||++|+-+|+|. |..+..+|+.++ .+|+++|.+++..+.|++-- .-.++.+...+... -.+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lG------------Ad~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLG------------ADHVINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhC------------CcEEEEcCCchhhHHhHh
Confidence 489999999999984 678899999776 79999999999999997642 12333322111111 112
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.||+|+...+ ....+...+.||+||++++ ++..
T Consensus 229 ~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~-vG~~ 261 (339)
T COG1064 229 IADAIIDTVG-PATLEPSLKALRRGGTLVL-VGLP 261 (339)
T ss_pred hCcEEEECCC-hhhHHHHHHHHhcCCEEEE-ECCC
Confidence 3999999999 8888999999999999998 5554
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=66.79 Aligned_cols=112 Identities=24% Similarity=0.272 Sum_probs=79.0
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
|+.-|...++||++|||+++..|.-|+.|.+.+-. .+.|++-|.++..+......+.+ +..+++.+...|+
T Consensus 145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~------l~~~~~~v~~~~~ 218 (375)
T KOG2198|consen 145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR------LPSPNLLVTNHDA 218 (375)
T ss_pred ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc------cCCcceeeecccc
Confidence 44333334899999999999999999888887632 24899999999998888777644 3335555555554
Q ss_pred CCCC-------C--CCCCccEEEECCCCc-----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 218 RKGW-------P--EFAPYDAIHVGAAAP-----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~-------~--~~~~fD~Ii~~~~~~-----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... . +...||.|+++.+.. .+..+..++||+||+||.+.-
T Consensus 219 ~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 219 SLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred eeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 4311 1 224799999998641 122456789999999999663
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.1e-05 Score=63.92 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
-.|++|||+|+|+|..+...++.+ . ..|++.|+.+.....++-|.+.++. ++.+...|... +...||+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-A-~~v~a~d~~P~~~~ai~lNa~angv-------~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-A-AEVVAADIDPWLEQAIRLNAAANGV-------SILFTHADLIG---SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-h-HHHHhcCCChHHHHHhhcchhhccc-------eeEEeeccccC---CCcceeE
Confidence 368899999999999998888874 3 5899999999999999988888764 57777777654 3357999
Q ss_pred EEECCCC------chhHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAA------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++.+..+ +.+.. +.+.|+..|..|+ ++++
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl-vgdp 180 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL-VGDP 180 (218)
T ss_pred EEeeceecCchHHHHHHH-HHHHHHhCCCEEE-EeCC
Confidence 9888765 12333 6777888887777 5554
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=67.61 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.+|.++||+||++|..|..+.+.. .+|++||..+ +.. .+ ...++|....+|.....+..+++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~~----~L--------~~~~~V~h~~~d~fr~~p~~~~vD 272 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MAQ----SL--------MDTGQVEHLRADGFKFRPPRKNVD 272 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cCH----hh--------hCCCCEEEEeccCcccCCCCCCCC
Confidence 4689999999999999999999983 5999999554 211 11 122789999999887665457899
Q ss_pred EEEECCCCc--hhHHHHHhccccC
Q 022372 229 AIHVGAAAP--EIPQALIDQLKPG 250 (298)
Q Consensus 229 ~Ii~~~~~~--~l~~~l~~~LkpG 250 (298)
.++|+.... .+.+-+.++|..|
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhcC
Confidence 999998852 3445555556544
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.6e-05 Score=64.01 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHH----HHHHHHH-HHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV----VSSIQNI-EKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l----~~A~~~~-~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
+++|++|+|+-.|.||+|..++..+++.+.|++.-..+... +..+.+. .+... ..|++.+-.+.....+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----YANVEVIGKPLVALGAP 120 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----hhhhhhhCCcccccCCC
Confidence 89999999999999999999999999999999875443211 1011110 00000 12333333332222222
Q ss_pred CCCccEEEECCC-------------CchhHHHHHhccccCcEEEEEE
Q 022372 224 FAPYDAIHVGAA-------------APEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 224 ~~~fD~Ii~~~~-------------~~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+..|++..... ...+..++++.|||||++++.-
T Consensus 121 -q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 121 -QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 33454443222 2345578999999999999843
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.9e-05 Score=72.55 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=58.2
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEE---eCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGV---EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~gi---D~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+||+|||+|.++++|.++- -...++ |..+..++.|.++ |+ +-+--+.+.-+..++ .+.||+|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR----Gv------pa~~~~~~s~rLPfp-~~~fDmv 185 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER----GV------PAMIGVLGSQRLPFP-SNAFDMV 185 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc----Cc------chhhhhhccccccCC-ccchhhh
Confidence 67999999999999999862 222222 4444555555433 11 222122233333444 4899999
Q ss_pred EECCCCc-------hhHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAAP-------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~~-------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|..... -++-++-|+|+|||.++.+-+
T Consensus 186 Hcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 186 HCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 9987652 133577899999999998554
|
; GO: 0008168 methyltransferase activity |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00054 Score=58.83 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=67.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCC-----
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~----- 221 (298)
.++|+++|||+||..|..+....++.+|++.|.|||+-.- ....-+.++.+ |+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------------~p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------------EPPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------------cCCCCcccccccccCCHHHHHHH
Confidence 3788999999999999999999999999999999997421 11133445554 444311
Q ss_pred ---CCCCCccEEEECCCC--------ch-----hH----HHHHhccccCcEEEEEECCC
Q 022372 222 ---PEFAPYDAIHVGAAA--------PE-----IP----QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~--------~~-----l~----~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+..+.|+|+++..- .| +. .-....++|+|.+++-+..+
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 133678999998753 11 11 22346789999999988664
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00015 Score=68.85 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=82.6
Q ss_pred HHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 145 L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
+.....++.+++|+|||.|....+++..-+ ..++|++.++..+.++........+. .+-.++.+|..+.++++
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFGKMPFED 176 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhhcCCCCc
Confidence 333577888999999999999999988743 68999999998888877666554443 34445888888888888
Q ss_pred CCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 225 APYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 225 ~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+.||.+.+..+.. .+.+++++.+||||+.+.-
T Consensus 177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999997776654 3458999999999999983
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00039 Score=64.41 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=73.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-----C---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-----R--- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-----~--- 218 (298)
.+++|.+||-+|+|. |..+...|+.+|. .+|+.+|.++..++.|++ +.. ..+....... .
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHH
Confidence 388999999999998 9999999999876 699999999999999987 432 1111111110 0
Q ss_pred CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.......+|+.+.....+...+.....+|.||.+++
T Consensus 235 ~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred HhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEE
Confidence 0111223599999999999889999999999999666
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00072 Score=62.52 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCcHH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCC----CC-CCC
Q 022372 152 GMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRK----GW-PEF 224 (298)
Q Consensus 152 g~~VLDiG~GsG~~-t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~gD~~~----~~-~~~ 224 (298)
.-++||||||.... .+..++.. +.+++|.|+++..++.|++++..+ .+. .+|+++...... +. ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~-----~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLE-----SRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T-----TTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccc-----cceEEEEcCCccccchhhhccc
Confidence 45899999998644 34444443 379999999999999999999998 654 788887654322 11 223
Q ss_pred CCccEEEECCCCchhHHHH
Q 022372 225 APYDAIHVGAAAPEIPQAL 243 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l 243 (298)
+.||..+|++++..-.+++
T Consensus 176 e~~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp S-EEEEEE-----SS----
T ss_pred ceeeEEecCCccccChhhh
Confidence 5899999999986555443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00015 Score=64.06 Aligned_cols=110 Identities=16% Similarity=0.050 Sum_probs=78.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.++.+.+.+--+....++|||||-|+....+... + -.+++-+|.|-.|++.++..-. .. -.+....+|..
T Consensus 60 ~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e-~-vekli~~DtS~~M~~s~~~~qd-p~-------i~~~~~v~DEE 129 (325)
T KOG2940|consen 60 DRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE-G-VEKLIMMDTSYDMIKSCRDAQD-PS-------IETSYFVGDEE 129 (325)
T ss_pred HHHHHHHHHHhhhCcceeecccchhhhhHHHHhc-c-hhheeeeecchHHHHHhhccCC-Cc-------eEEEEEecchh
Confidence 3444544433345568999999999999888764 2 2689999999999999875311 11 13445567766
Q ss_pred CCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+++|+|++...++++ +..+...|||+|.++.++-
T Consensus 130 ~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 130 FLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred cccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHh
Confidence 555666899999999887643 3678889999999998663
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=62.24 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC---CCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~---~~~~ 223 (298)
.+++.+|+-+|+|+ |.++..+++..|. .+|+.+|.+++.++.|++..... .+..... +... ....
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILELTG 235 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHHhC
Confidence 34555999999999 9999999998765 69999999999999998754221 1111111 0000 1112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++-........+.+.+.+++||++++
T Consensus 236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 236 GRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 23699999998877778999999999999998
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00064 Score=61.18 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=68.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..+....|-|+|||-+.++. . ....|++.|+.+ .+-+++..|.
T Consensus 168 ld~ii~~ik-~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a---------------------~~~~V~~cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIK-RRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA---------------------VNERVIACDM 219 (325)
T ss_pred HHHHHHHHH-hCcCceEEEecccchhhhhh----c--cccceeeeeeec---------------------CCCceeeccc
Confidence 455667665 23345688999999988654 1 225899999642 3456788899
Q ss_pred CCCCCCCCCccEEEECCCC-----chhHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~v 257 (298)
.+.+.++++.|+++...++ .....++.+.||+||.+.|.-
T Consensus 220 ~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 220 RNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 9887788999999777654 356689999999999999853
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=58.09 Aligned_cols=157 Identities=19% Similarity=0.285 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC-CC-CCC--------CCCCCccc-cCCCcc--ChHHHHHHHHHHHH
Q 022372 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVP-DG-TPP--------YVDSPMAI-GYNATI--SAPHMHATCLQLLE 146 (298)
Q Consensus 80 ~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p-~~-~~a--------Y~d~~~~~-g~~~~i--s~p~~~~~~l~~L~ 146 (298)
.+..+-+.|.+.|+ .++-...++ .|.. .| .+ ..+ +.|.-+.. +.+..+ ..|.|++.. +.+
T Consensus 26 n~~rly~~lv~~gv-~Selll~~l---~rn~-s~n~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A-~ai- 98 (271)
T KOG1709|consen 26 NQSRLYRRLVEAGV-PSELLLFAL---GRNE-SPNADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALA-EAI- 98 (271)
T ss_pred cHHHHHHHHHHcCC-chhhhhhcc---cccc-CccccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHH-HHH-
Confidence 35668889999994 554443333 2222 22 11 122 22332221 222222 334444432 222
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 147 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 147 ~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
..+|.+||+||-|-|.....+-+. .| .+=+-+|.+|+.+.+.++. +. ....||.+..|-..+ .+++
T Consensus 99 --~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~----gw---~ek~nViil~g~WeDvl~~L~d 167 (271)
T KOG1709|consen 99 --STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDW----GW---REKENVIILEGRWEDVLNTLPD 167 (271)
T ss_pred --hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhc----cc---ccccceEEEecchHhhhccccc
Confidence 357889999999999988887776 45 4567789999998877654 32 234788888776554 3333
Q ss_pred CCCccEEEECCCC------chhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi 255 (298)
+.||-|+-+.-. .+..+.+.++|||+|++-.
T Consensus 168 -~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 168 -KHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred -cCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 679999888653 3556889999999998876
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00016 Score=65.81 Aligned_cols=97 Identities=24% Similarity=0.291 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
...+..++|+|||.|-.+.. .|...++|.|+...++.-+++. +...+..+|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 44588999999999864221 2445799999999988887642 222678889988777778999
Q ss_pred EEEECCCCchhH---------HHHHhccccCcEEEEEECCCce
Q 022372 229 AIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 229 ~Ii~~~~~~~l~---------~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
.+++.++.+++. +++.+.|||||...+.+....|
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 999999987765 6788999999999987765443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=58.31 Aligned_cols=104 Identities=24% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH----hc-------------------cC----C-
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK----SA-------------------AA----P- 203 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~----~~-------------------~~----~- 203 (298)
..+||.-|||-|+++-.+|.+. -.+.|.|.|--|+-...-.+.. .. +. +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4689999999999999999983 6899999999987555433221 00 00 0
Q ss_pred ------ccCCCCEEEEEcCCCCCCCCC---CCccEEEECCCC---c---hhHHHHHhccccCcEEEEEECC
Q 022372 204 ------LLKEGSLSVHVGDGRKGWPEF---APYDAIHVGAAA---P---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 204 ------~l~~~~v~~~~gD~~~~~~~~---~~fD~Ii~~~~~---~---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.-...++....||..+...+. +.||+|+...-+ + ++.+.+.++||||| +.|-+|.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 011246778888888765554 689999665433 3 34578889999999 5565665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=60.45 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
..+|||+|+|+|..+..+.+.++...+++++|.|+.+++.++.-+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 46999999999987777777766446899999999999999886654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.011 Score=52.97 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=64.9
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++-.+...--.|++||=+|=.- ..+..++.. +...+|+.+|+++.+++..++..++.++ +++.++.|
T Consensus 30 ~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~D 100 (243)
T PF01861_consen 30 TLRRAALMAERGDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYD 100 (243)
T ss_dssp HHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---
T ss_pred HHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 34554444442233678999998443 233444433 4447999999999999999999888764 49999999
Q ss_pred CCCCCCCC--CCccEEEECCCCc-----hhHHHHHhccccCc-EEEEEECCC
Q 022372 217 GRKGWPEF--APYDAIHVGAAAP-----EIPQALIDQLKPGG-RMVIPVGNI 260 (298)
Q Consensus 217 ~~~~~~~~--~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi~v~~~ 260 (298)
.++.+|+. ++||+++.+++.. -......+.||..| ..++.++..
T Consensus 101 lR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 101 LRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred ccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 99988763 7999999999863 12355667777544 767766553
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00027 Score=62.12 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~~~ 226 (298)
....|+|.-||.|..+..++... ..|++||++|..+..|+.|++-.|.. ++|+|++||..+... +...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHHHHHHHHhhhhhe
Confidence 34689999999999999999885 58999999999999999999888765 699999999886432 2234
Q ss_pred ccEEEECCCC
Q 022372 227 YDAIHVGAAA 236 (298)
Q Consensus 227 fD~Ii~~~~~ 236 (298)
+|+++..++.
T Consensus 166 ~~~vf~sppw 175 (263)
T KOG2730|consen 166 YDCVFLSPPW 175 (263)
T ss_pred eeeeecCCCC
Confidence 6677766653
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0078 Score=53.67 Aligned_cols=97 Identities=28% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCC--CCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPE--FAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~~~--~~~ 226 (298)
.+|..+||+|+.||.+|.++.+. |. .+|+++|..-..+..--++ .+++.... .+++...++ .+.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~~kLR~-----------d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLHWKLRN-----------DPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccCHhHhc-----------CCcEEEEecCChhhCCHHHcccC
Confidence 46789999999999999999998 33 6999999876554442211 14444443 233321111 136
Q ss_pred ccEEEECCCCc---hhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|.++++.++. .+...+...++++|.++..+-+
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence 78999988775 4568889999999999987744
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0026 Score=58.55 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. ++++...+|.--|.|..+..+.+.+++.++++|+|.++.+++.|++++...+ +++.++
T Consensus 8 ipVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-------~r~~~v 78 (314)
T COG0275 8 IPVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-------GRVTLV 78 (314)
T ss_pred cchHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-------CcEEEE
Confidence 3456778888887 8888999999999999999999988777899999999999999999987643 689999
Q ss_pred EcCCCCCC-----CCCCCccEEEECCC
Q 022372 214 VGDGRKGW-----PEFAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~-----~~~~~fD~Ii~~~~ 235 (298)
++...+.. ...+.+|-|+.+.+
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEEecc
Confidence 98766421 11247888877764
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.006 Score=55.49 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=68.1
Q ss_pred HHHHHHHHHHccCCCC-CEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 137 MHATCLQLLEENLKPG-MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g-~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
+..+....|. -..| ...||+|||- -..+-.+|+...|+.+|+-+|.+|-.+..++..+..... ....++
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------g~t~~v 126 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------GRTAYV 126 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------SEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------ccEEEE
Confidence 3455566664 2213 5799999995 335666777778999999999999999999988755321 238899
Q ss_pred EcCCCCC-----------CCCCCCccEEEECCCCch---------hHHHHHhccccCcEEEEEECC
Q 022372 214 VGDGRKG-----------WPEFAPYDAIHVGAAAPE---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 214 ~gD~~~~-----------~~~~~~fD~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+|..+. ..+....=.++..+.++. +.+.+.+.|.||..|+++...
T Consensus 127 ~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 127 QADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp E--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred eCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 9998862 111122224555665544 346788999999999997654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0071 Score=59.96 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=91.3
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l 205 (298)
|+..+..++...+.+.+. +.+..+|.|-.||+|.+....++.++. ...++|.|+++.....|+-|+--++..
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--- 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--- 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence 666676777777778776 467789999999999988888777643 267999999999999999998776642
Q ss_pred CCCCEEEEEcCCCCCC-C----CCCCccEEEECCCCc-------------------------------hhHHHHHhcccc
Q 022372 206 KEGSLSVHVGDGRKGW-P----EFAPYDAIHVGAAAP-------------------------------EIPQALIDQLKP 249 (298)
Q Consensus 206 ~~~~v~~~~gD~~~~~-~----~~~~fD~Ii~~~~~~-------------------------------~l~~~l~~~Lkp 249 (298)
. ++....+|....+ . ..+.||.|+++++.- ...+.+...|+|
T Consensus 241 -~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 -G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred -c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 1 4566666655432 2 235799999988751 001457788999
Q ss_pred CcEEEEEECCC
Q 022372 250 GGRMVIPVGNI 260 (298)
Q Consensus 250 GG~Lvi~v~~~ 260 (298)
||+..+.++.+
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88777666543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=60.26 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..++++||-.|+|. |..+..+++..|. .+|+++|.+++.++.+++ + +....+...+ .+..+.....+.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~-l---Ga~~vi~~~~-----~~~~~~~~~~g~~ 236 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE-M---GADKLVNPQN-----DDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH-c---CCcEEecCCc-----ccHHHHhccCCCC
Confidence 45789999999986 8888888888653 379999999999888865 2 2110011011 1111111112359
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+.........+...+.|++||+++.
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 9999887776677888999999999987
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0058 Score=53.53 Aligned_cols=114 Identities=17% Similarity=0.240 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~---~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
..|.....+.+.+- .++| +.|+|+|.-.|..+..+|.+ +++.++|+|+|++-....... .+..... ++
T Consensus 16 q~P~Dm~~~qeli~-~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~-----~r 86 (206)
T PF04989_consen 16 QYPQDMVAYQELIW-ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMS-----PR 86 (206)
T ss_dssp S-HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TT
T ss_pred cCHHHHHHHHHHHH-HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcccc-----Cc
Confidence 34554554444443 3555 79999999999988877654 456689999999654433221 1112211 79
Q ss_pred EEEEEcCCCCC--------CCCCCCccEEEECCCC--chhH---HHHHhccccCcEEEE
Q 022372 210 LSVHVGDGRKG--------WPEFAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 210 v~~~~gD~~~~--------~~~~~~fD~Ii~~~~~--~~l~---~~l~~~LkpGG~Lvi 255 (298)
|++++||..+. ........+|+.++.- +++. +.....+++|+.+|+
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 99999998752 1111234566666652 3333 557789999999997
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00015 Score=63.08 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 133 SAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 133 s~p~~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
-++...++++..=. ..-....++||+|+|.|-.+..++..+ .+|++.|.|..|..+.+++ +..
T Consensus 93 fSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk-------------~yn 156 (288)
T KOG3987|consen 93 FSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK-------------NYN 156 (288)
T ss_pred ecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc-------------CCc
Confidence 34444444443321 122345799999999999999999887 6899999999998877543 112
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc------hhHHHHHhcccc-CcEEEEEEC
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKP-GGRMVIPVG 258 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~Lkp-GG~Lvi~v~ 258 (298)
++.. .+....+-+||+|.|-..+. .+.+.++..|+| +|++++..-
T Consensus 157 Vl~~--~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 157 VLTE--IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred eeee--hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 2211 11112224699998776653 466889999999 999888553
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=60.32 Aligned_cols=105 Identities=23% Similarity=0.170 Sum_probs=80.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-------SSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~-------~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
..+||+-|+|-=.|||.+....|+.. +.|+|.|++-.++. ..+.|+++.+.. ..-+.++.+|....
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNP 277 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCc
Confidence 37899999999999999988888874 79999999988887 346788877643 13467888998763
Q ss_pred -CCCCCCccEEEECCCC---------------------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 221 -WPEFAPYDAIHVGAAA---------------------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~---------------------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+-....||+|+|+++. ..+..-..+.|..||++++-++.
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 3445689999999873 01113356789999999996663
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.002 Score=59.01 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~f 227 (298)
...++||-||-|.|......++. ..-..+.-+|++...++..++.+...... +..+++.++.||+..... ..++|
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCc
Confidence 34479999999998877666665 33368999999999999999988765443 566899999999875332 24799
Q ss_pred cEEEECCCCc----------hhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAP----------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+.+..-+ .+.+.+.+.||++|++++
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 9999887643 233678899999999988
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0013 Score=61.04 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. .+++..++|.--|.|..+..+.+.+++ ++++|+|.++++++.|++++... .+++.++
T Consensus 5 ~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~ 74 (310)
T PF01795_consen 5 IPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-------DDRFIFI 74 (310)
T ss_dssp --TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-------CTTEEEE
T ss_pred ecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-------cceEEEE
Confidence 4566788899997 888899999999999999999988755 99999999999999998877543 2789999
Q ss_pred EcCCCCC------CCCCCCccEEEECCCC
Q 022372 214 VGDGRKG------WPEFAPYDAIHVGAAA 236 (298)
Q Consensus 214 ~gD~~~~------~~~~~~fD~Ii~~~~~ 236 (298)
+++..+. ......+|.|+.+.+.
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred eccHHHHHHHHHHccCCCccCEEEEcccc
Confidence 9987642 1123579999988763
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.004 Score=55.95 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+.+.+-...++..+|+|||||.=-++..+... .++..++|.|++..+++.....+...+ .+.++...|..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~-------~~~~~~v~Dl~ 164 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG-------VPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC-------CCcceeEeeee
Confidence 3344444435666789999999998888877765 456799999999999999998887754 46778888888
Q ss_pred CCCCCCCCccEEEECCCCchhH-------HHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIP-------QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~-------~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+. ...|+.+.--.++-+- -++.+.++- =.++++++.
T Consensus 165 ~~~~~-~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 165 SDPPK-EPADLALLLKTLPCLERQRRGAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp TSHTT-SEESEEEEET-HHHHHHHSTTHHHHHHHHSCE-SEEEEEEES
T ss_pred ccCCC-CCcchhhHHHHHHHHHHHhcchHHHHHHHhCC-CeEEEeccc
Confidence 77554 6799999887765333 233444432 355666664
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.003 Score=57.27 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc---C---------CccC-
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---A---------PLLK- 206 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~-t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~---~---------~~l~- 206 (298)
+.+.+......|.++||||||+-.. ...+.+.+ ..++..|..+.-.+..++.++..+. + +.-.
T Consensus 46 l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~ 122 (256)
T PF01234_consen 46 LHETFSSGGVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKRE 122 (256)
T ss_dssp HHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSS
T ss_pred HHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcc
Confidence 3344443334677999999998432 33333433 5899999999888877666543211 0 0000
Q ss_pred ---------CCCE-EEEEcCCCCCCCCC------CCccEEEECCCCch----------hHHHHHhccccCcEEEEEE
Q 022372 207 ---------EGSL-SVHVGDGRKGWPEF------APYDAIHVGAAAPE----------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 207 ---------~~~v-~~~~gD~~~~~~~~------~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~v 257 (298)
...| +++..|+.+..+-. .+||+|++...++. ..+++.++|||||.|++..
T Consensus 123 ~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 123 KWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp GHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0123 36678887643321 24999999987643 3367889999999999843
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=56.65 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=51.4
Q ss_pred CCCC--CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc---CCCCEEEEEcCCCCCCC-
Q 022372 149 LKPG--MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWP- 222 (298)
Q Consensus 149 l~~g--~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l---~~~~v~~~~gD~~~~~~- 222 (298)
++++ .+|||.-+|-|.-+..+|.. | .+|+++|.+|-+....+.-+++....... ...+++++++|..+.+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 5665 49999999999999999976 5 58999999998776665544433221111 01479999999987554
Q ss_pred CCCCccEEEECCCCc
Q 022372 223 EFAPYDAIHVGAAAP 237 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~ 237 (298)
+..+||+|+.++.++
T Consensus 148 ~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFP 162 (234)
T ss_dssp HSS--SEEEE--S--
T ss_pred cCCCCCEEEECCCCC
Confidence 346899999999875
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=52.31 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=54.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCccEEEECCCC-c--------------hhH
Q 022372 178 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDAIHVGAAA-P--------------EIP 240 (298)
Q Consensus 178 ~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~-~--------------~l~ 240 (298)
+|+|.|+.+++++.+++++.+.+.. .+++++...-.... .+.+++|+++.|.+. + ...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6999999999999999999997764 58999887654321 121589999988764 1 123
Q ss_pred HHHHhccccCcEEEEEEC
Q 022372 241 QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 241 ~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+.+.|+|||++++.+-
T Consensus 76 ~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHEEEEEEEEEEE-
T ss_pred HHHHHhhccCCEEEEEEe
Confidence 678899999999999763
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0065 Score=57.16 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH---IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~---s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
.++|.+||-+|+|. |.++..+++..+ .+|++++. +++..+.+++ .+. ..+.....+..+ ....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga------~~v~~~~~~~~~-~~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGA------TYVNSSKTPVAE-VKLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCC------EEecCCccchhh-hhhc
Confidence 45789999999987 888888998875 47999987 6777776653 121 111110111100 0112
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.+|+|+.............+.|++||++++
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEE
Confidence 4699999988876677888999999999876
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0044 Score=58.06 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=72.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
...+|+|.|.|..+..+.... .++-+++++...+..++.++. +.|+.+.+|..+..|. -|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P~---~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTPK---GDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc----------CCcceecccccccCCC---cCeEEE
Confidence 688999999999998888865 369999999999888876653 2377888998887554 469987
Q ss_pred CCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 233 GAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 233 ~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
--.++ ++++++++.|+|||.+++.-.
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 77664 456889999999999998443
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=55.63 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
+++|++||-+|+|. |.++..+++......+|+++|.+++.++.+++ + + ..... .+ ..+...+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~--------~~~~~-~~----~~~~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D--------ETYLI-DD----IPEDLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C--------ceeeh-hh----hhhccCC
Confidence 57899999999987 77777777652122579999999988888764 1 1 11111 11 1111248
Q ss_pred cEEEECCC---CchhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAA---APEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+-... .+...+...+.|++||++++
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 99987666 34567888999999999986
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0075 Score=57.82 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD 228 (298)
..+.+|||.=+|+|.=+...+..++...+|+.-|+++++++..++|++.+++. .+++++.+.|+.... .....||
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----DERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----GCCEEEEES-HHHHHCHSTT-EE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----CceEEEehhhHHHHhhhccccCC
Confidence 34568999999999999888887544469999999999999999999988764 136888888876543 1347899
Q ss_pred EEEECCCCc--hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|=+++--. -+.+.+.+.+|.||.|.++-.+
T Consensus 124 ~IDlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 124 VIDLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 998886432 4568899999999999997643
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.033 Score=55.40 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CC-------
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GR------- 218 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD---~~------- 218 (298)
.++.+|+-+|+|. |..+...|+..|. .|+++|.+++..+.+++. .. ..+.+-..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aesl-GA---------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESM-GA---------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc-CC---------eEEEeccccccccccchhhhc
Confidence 4789999999998 8888999998874 799999999999988762 11 111110000 00
Q ss_pred -CC--------CCC-CCCccEEEECCCCc-----hh-HHHHHhccccCcEEEE
Q 022372 219 -KG--------WPE-FAPYDAIHVGAAAP-----EI-PQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 -~~--------~~~-~~~fD~Ii~~~~~~-----~l-~~~l~~~LkpGG~Lvi 255 (298)
.. +.+ ...+|+|+.....+ .+ .++..+.+||||+++.
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 00 000 13589999988763 35 4899999999999886
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.03 Score=52.31 Aligned_cols=92 Identities=24% Similarity=0.198 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+++|++||-.|+|. |..+..+|+..| .+|++++.+++..+.+++. +. +. ++... +. ..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~~----Ga------~~--vi~~~--~~--~~~~ 223 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALAL----GA------AS--AGGAY--DT--PPEP 223 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHh----CC------ce--ecccc--cc--Cccc
Confidence 478899999999875 667788888765 4799999999888777552 22 11 11100 11 1135
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|+++.............+.|++||++++ ++
T Consensus 224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~-~G 254 (329)
T TIGR02822 224 LDAAILFAPAGGLVPPALEALDRGGVLAV-AG 254 (329)
T ss_pred ceEEEECCCcHHHHHHHHHhhCCCcEEEE-Ee
Confidence 88877665555677888899999999977 44
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.035 Score=51.30 Aligned_cols=86 Identities=26% Similarity=0.304 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++++||-+|+|. |.++..+++..|. ..|+++|.+++.++.|.+. . ++ +..+. ....+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~-----------~i--~~~~~--~~~g~D 202 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E-----------VL--DPEKD--PRRDYR 202 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c-----------cc--Chhhc--cCCCCC
Confidence 4578899999987 8888989988753 3577789888776665431 0 00 00000 124699
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+-........+.+.+.|+++|++++
T Consensus 203 vvid~~G~~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 203 AIYDASGDPSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EEEECCCCHHHHHHHHHhhhcCcEEEE
Confidence 999888877778889999999999996
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.04 Score=51.88 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~---~ 220 (298)
.+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. +. + .++.. +... .
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~~----Ga------~--~~i~~~~~~~~~~i~~ 239 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREF----GA------T--HTVNSSGTDPVEAIRA 239 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----CC------c--eEEcCCCcCHHHHHHH
Confidence 377899999999876 7788888888652 3699999999988888542 11 1 11111 1000 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+|+|+-........+...+.+++||++++ ++
T Consensus 240 ~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~-~G 276 (358)
T TIGR03451 240 LTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVL-VG 276 (358)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE-EC
Confidence 11223589999777666667788899999999987 44
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=50.51 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=70.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-CccCCCCEEEEEcCCCCCCCC---CCCcc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVHVGDGRKGWPE---FAPYD 228 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l~~~~v~~~~gD~~~~~~~---~~~fD 228 (298)
-.+.|||||-|.+...|+.+. |+.-+.|.|+-....+..++++...+.. ..-.+.|+.+...+.....+. .+..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 467999999999999999996 7789999999999999988888765431 111146777777776654331 12222
Q ss_pred EEEECCCC--------------chhHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAA--------------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
-.+.-.+- ..+..+..-+|++||.++...
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222221 233455666899999999844
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.052 Score=49.32 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..++++||-+|+|+ |..+..+++..|. .+|+++|.+++..+.+++. +....+.... . .+..........+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~--~--~~~~~~~~~~~g~ 188 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSF----GATALAEPEV--L--AERQGGLQNGRGV 188 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CCcEecCchh--h--HHHHHHHhCCCCC
Confidence 45889999999986 7788888888653 3588999999888877652 2110010000 0 0000001122368
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
|+++-........+...+.|+++|++++
T Consensus 189 d~vid~~G~~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 189 DVALEFSGATAAVRACLESLDVGGTAVL 216 (280)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCEEEE
Confidence 9999877767777888999999999987
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.024 Score=47.07 Aligned_cols=107 Identities=28% Similarity=0.250 Sum_probs=73.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++.++. -++..+.+|+|+|.|......++.. . ...+|+|.++-++..++-+.-+.+.. +..+|..-|.
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~-~~a~GvELNpwLVaysrl~a~R~g~~-----k~trf~Rkdl 131 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-L-RPAVGVELNPWLVAYSRLHAWRAGCA-----KSTRFRRKDL 131 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-C-CcCCceeccHHHHHHHHHHHHHHhcc-----cchhhhhhhh
Confidence 455566665 4565689999999999988888873 2 46899999999999998877776665 5677777776
Q ss_pred CCCCCCCCCccEEEECCC---CchhHHHHHhccccCcEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAA---APEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+... ..|..++...+ +..+...+..-+..+.+++.
T Consensus 132 wK~dl--~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 132 WKVDL--RDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhccc--cccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 65433 33444433332 23344566666777777764
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.069 Score=49.13 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=65.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-----GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-----~~ 221 (298)
.++++.+||..|+|. |..+..+++..| .+|++++.+++..+.+++. +. .. ++...... ..
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~----g~------~~--~~~~~~~~~~~~~~~ 227 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKEL----GA------DE--VLNSLDDSPKDKKAA 227 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh----CC------CE--EEcCCCcCHHHHHHH
Confidence 367889999988774 888888888865 5799999999888777541 21 11 11111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+++.........+...+.|+++|+++.
T Consensus 228 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 228 GLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 2235799998776666678888999999999987
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.052 Score=51.83 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-CCC---CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-~~~---~~~ 222 (298)
.+.++.+||..|+|. |..+..+++..+. .++++++.+++..+.+++.... ..+.....+ ... ...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALRELT 250 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHHc
Confidence 477889999999988 8899999998753 3699999999998888764210 111111111 000 112
Q ss_pred CCCCccEEEECCCC---------------------chhHHHHHhccccCcEEEEE
Q 022372 223 EFAPYDAIHVGAAA---------------------PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~---------------------~~l~~~l~~~LkpGG~Lvi~ 256 (298)
....+|+|+..... ....+++.+.|+++|+++..
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 22368998775432 23567888999999999884
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.038 Score=53.99 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
+.+-. ++|.+|||.-.++..+-+-+ - ..++.+|+|+..++....+... ..+...+...|......++++|
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G-~-~dI~~iD~S~V~V~~m~~~~~~-------~~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNG-F-EDITNIDSSSVVVAAMQVRNAK-------ERPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcC-C-CCceeccccHHHHHHHHhcccc-------CCcceEEEEecchhccCCCcce
Confidence 45556 99999999998888877753 2 5899999999999888765432 2256788899988877777999
Q ss_pred cEEEECCCCchh----------------HHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEI----------------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l----------------~~~l~~~LkpGG~Lvi 255 (298)
|+|+.-+.++++ ..++++.|++||+.+.
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 999887765432 2578899999999654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.016 Score=55.88 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=46.6
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
.|||+|+|+|.++...++.. . -.|+++|.-..|.+.|++-..+++.+ ++++++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-a-D~vtA~EvfkPM~d~arkI~~kng~S-----dkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-A-DSVTACEVFKPMVDLARKIMHKNGMS-----DKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-C-CeEEeehhhchHHHHHHHHHhcCCCc-----cceeeec
Confidence 68999999999999888874 3 47999999999999999999998886 6666654
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.098 Score=49.56 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++++||-.|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++.....+ .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga------~--~~i~~~~~~~~~~i~~ 254 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALAREL----GA------T--ATVNAGDPNAVEQVRE 254 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHHc----CC------c--eEeCCCchhHHHHHHH
Confidence 378899999999876 7788888887653 3699999999988888542 21 1 111111000 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
... +.+|+|+-........+...+.|+++|+++.
T Consensus 255 ~~~-~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 255 LTG-GGVDYAFEMAGSVPALETAYEITRRGGTTVT 288 (371)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 112 2689999877666677888999999999886
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.064 Score=49.86 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC--CC---CCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--RK---GWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~--~~---~~~ 222 (298)
+.+|++||-.|+|. |..+..+++..|. .+|++++.+++..+.+++. +. . .++.... .. ...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~~----ga------~--~~i~~~~~~~~~~~~~~ 227 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKAL----GA------D--FVINSGQDDVQEIRELT 227 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----CC------C--EEEcCCcchHHHHHHHh
Confidence 67899999999876 7777888888653 2499999999888777532 21 1 1111100 00 011
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+|+....-........+.|+++|++++
T Consensus 228 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 228 SGAGADVAIECSGNTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 223699999877766666778899999999986
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.013 Score=51.57 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHh-------------------c----------
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKS-------------------A---------- 200 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~-------------------~---------- 200 (298)
.+-++.|-+||+||+...+.-+-++. ..|++-|+++++++.|++|+.-. +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34589999999999988887653322 58999999999999999998411 0
Q ss_pred ---cC---Ccc-CCCCEEEEEcCCCCCC-----CCCCCccEEEECCCC---------------chhHHHHHhccccCcEE
Q 022372 201 ---AA---PLL-KEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRM 253 (298)
Q Consensus 201 ---~~---~~l-~~~~v~~~~gD~~~~~-----~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~L 253 (298)
+. ... +.....+..+|+.+.- ......|+|+.+.+. ..+++.+...|-+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00 001 1234667788887621 122335999888764 34568889999656666
Q ss_pred EE
Q 022372 254 VI 255 (298)
Q Consensus 254 vi 255 (298)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.053 Score=43.97 Aligned_cols=47 Identities=17% Similarity=0.026 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
.+.+|+|||++.|..+++++.. |. ..|+++|.++.+.+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 4689999999999999999987 44 68999999999999999988653
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0055 Score=51.57 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCCCCCc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--~~~~~~~~f 227 (298)
.|.+|||+|.|. |..+..+|... +...|...|-+++.++-.++-...+.. .....+.++.-+.. ....+...|
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~---s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA---SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc---cccceehhhHHHHhhhHHHHhhCcc
Confidence 467899999996 55556667664 668999999999999888776554422 12233322221111 112233589
Q ss_pred cEEEECCCC------chhHHHHHhccccCcEEEEEECCCce
Q 022372 228 DAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 228 D~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
|.|++...+ ..+.+.+...|+|.|+-++..|...+
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 999988764 34668889999999998776665443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0081 Score=52.88 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=56.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~~~fD~ 229 (298)
.++|||||=+.+....-... -.|+.||+++. .-.+.+.|..+-+. +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeE
Confidence 58999999877654433333 36999998752 22345566665322 3468999
Q ss_pred EEECCCCch---------hHHHHHhccccCcE-----EEEEECC
Q 022372 230 IHVGAAAPE---------IPQALIDQLKPGGR-----MVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~---------l~~~l~~~LkpGG~-----Lvi~v~~ 259 (298)
|.+..++.- +...+.+.|+|+|. |++.++.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 988877643 44778899999999 7776654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.1 Score=46.00 Aligned_cols=94 Identities=27% Similarity=0.329 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-----WP 222 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-----~~ 222 (298)
+.++.+||..|+|+ |..+..+++..+ .+|++++.+++..+.+++. +. .. ++....... ..
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~------~~--~~~~~~~~~~~~~~~~ 197 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GA------DH--VIDYKEEDLEEELRLT 197 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CC------ce--eccCCcCCHHHHHHHh
Confidence 47889999999996 777777888765 6899999998877776432 11 11 111000000 11
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+.+|+++...........+.+.|+++|+++..
T Consensus 198 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 198 GGGGADVVIDAVGGPETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred cCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 2357999998776646778889999999999873
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.033 Score=44.27 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CCCCCCCccEEEECC
Q 022372 161 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWPEFAPYDAIHVGA 234 (298)
Q Consensus 161 GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~~~~~~fD~Ii~~~ 234 (298)
|.|..+..+++..| .+|+++|.+++..+.+++. +. . .++..+..+ .......+|+|+-..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga------~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GA------D--HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TE------S--EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----cc------c--ccccccccccccccccccccccceEEEEec
Confidence 45888999999987 7999999999998888653 11 1 222222111 112225799999999
Q ss_pred CCchhHHHHHhccccCcEEEEEECCC
Q 022372 235 AAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 235 ~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
......+...+.|+++|++++ ++..
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~-vg~~ 91 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVV-VGVY 91 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEE-ESST
T ss_pred CcHHHHHHHHHHhccCCEEEE-EEcc
Confidence 988899999999999999998 5543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.075 Score=51.58 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=65.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
..++.... ..-+|++|+-+|+|. |...+..++..| .+|+.+|.++...+.|++. +. +....+
T Consensus 190 ~~i~r~t~-~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~----G~---------~~~~~~- 252 (413)
T cd00401 190 DGIKRATD-VMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAME----GY---------EVMTME- 252 (413)
T ss_pred HHHHHhcC-CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhc----CC---------EEccHH-
Confidence 34444433 245789999999998 888888888766 4799999999887777541 21 111111
Q ss_pred CCCCCCCCCccEEEECCCCchhHH-HHHhccccCcEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEIPQ-ALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l~~-~l~~~LkpGG~Lvi 255 (298)
+.. ..+|+|+.......+.. ...+.+|+||+++.
T Consensus 253 -e~v---~~aDVVI~atG~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 253 -EAV---KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred -HHH---cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 111 24799998877777665 45899999999876
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.051 Score=48.43 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCCCC-----CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRKGW-----PEF 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~gD~~~~~-----~~~ 224 (298)
++.++||||.|.-..=-.+...- -.-+.+|.|+++..++.|+..+..+ ++. ..++++...-.+-. -..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~-----~~I~lr~qk~~~~if~giig~n 151 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLE-----RAIRLRRQKDSDAIFNGIIGKN 151 (292)
T ss_pred CceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchh-----hheeEEeccCcccccccccccc
Confidence 56689999998643211111110 1258999999999999999998876 332 34666554433211 124
Q ss_pred CCccEEEECCCCchhHHHHH
Q 022372 225 APYDAIHVGAAAPEIPQALI 244 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~ 244 (298)
+.||+++|++++++-.++..
T Consensus 152 E~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 152 ERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred ceeeeEecCCCcchhHHHHH
Confidence 68999999999987665544
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.033 Score=53.03 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=66.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-----CCC--
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRK-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-----~~~-- 219 (298)
.+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++. +. . .++... ..+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga------~--~~i~~~~~~~~~~~~v 261 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKEM----GI------T--DFINPKDSDKPVHERI 261 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHc----CC------c--EEEecccccchHHHHH
Confidence 478899999999987 8888888888652 3699999999988888541 21 1 111111 000
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
.... +.+|+|+-........+...+.+++| |++++ ++
T Consensus 262 ~~~~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~-~G 300 (381)
T PLN02740 262 REMTG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVL-LG 300 (381)
T ss_pred HHHhC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEE-Ec
Confidence 0112 26999998888777778888899997 98876 44
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.17 Score=47.30 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-----CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----KGW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-----~~~ 221 (298)
..+++.+||-.|+|+ |..+..+|+..|. ..|++++.+++..+.+++ + +.. .++..+.. ...
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---Ga~--------~~i~~~~~~~~~~~~~ 223 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS-L---GAM--------QTFNSREMSAPQIQSV 223 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH-c---CCc--------eEecCcccCHHHHHHH
Confidence 367889999999877 7788888888753 347899999988887643 2 211 11111100 001
Q ss_pred CCCCCcc-EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYD-AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD-~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+| +|+-............+.|++||++++
T Consensus 224 ~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 224 LRELRFDQLILETAGVPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred hcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 1223577 666655555677888899999999887
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.16 Score=47.54 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~---~ 220 (298)
.+++|.+||-.|+|. |..+..+++..| .+|+++|.+++.++.+++ + +.. .-+..... +..+ .
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---Ga~-----~~i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG-F---GAD-----LTLNPKDKSAREVKKLIKA 231 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-h---CCc-----eEecCccccHHHHHHHHHh
Confidence 478899999999977 888888898875 479999999998888754 2 211 00110000 0000 0
Q ss_pred CCCCCCcc----EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYD----AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD----~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+| +|+-........+...+.|++||++++
T Consensus 232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVV 270 (349)
T ss_pred hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEE
Confidence 11112344 677665555667778899999999986
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.082 Score=54.35 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHHhccC-Cc
Q 022372 151 PGMHALDIGSGTGYLTACFALMV------GP-----QGRAVGVEHIP---ELVVSS-----------IQNIEKSAAA-PL 204 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~------g~-----~~~V~giD~s~---~~l~~A-----------~~~~~~~~~~-~~ 204 (298)
+.-+|+|+|-|+|+......+.+ .+ .-+++++|..| +-+..+ ++-...+... +.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999877776554 12 24899999755 222222 1222111110 00
Q ss_pred -----cCCC--CEEEEEcCCCCCCCCC-CCccEEEECCCC---------chhHHHHHhccccCcEEEEEE
Q 022372 205 -----LKEG--SLSVHVGDGRKGWPEF-APYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 205 -----l~~~--~v~~~~gD~~~~~~~~-~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+..+ ++++..||+.+..+.. ..||+++.++-. ++++..+.+.++|||+++-..
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1112 4557778887654432 469999999743 357789999999999999644
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.26 Score=46.03 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=65.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++.+||-.|+|. |..+..+++..|. ..++++|.+++..+.+++ .+. . .++...... .
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~------~--~~v~~~~~~~~~~i~~ 229 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGA------T--DIVDYKNGDVVEQILK 229 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCC------c--eEecCCCCCHHHHHHH
Confidence 377899999999875 7788888888753 369999999888777754 121 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++....-........+.|+++|+++.
T Consensus 230 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 230 LTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred HhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 11224699999776666677888999999999885
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.39 Score=44.31 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC----CCC-
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG----RKG- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~----~~~- 220 (298)
.+++|++||-.|. | .|..+..+++..| .+|++++.+++..+.+++ + +. +. ++..+. ...
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~-l---Ga------~~--vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK-L---GF------DV--AFNYKTVKSLEETL 200 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------CE--EEeccccccHHHHH
Confidence 4788999999995 3 4888888998865 579999999888777753 2 21 11 111110 000
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+.+|+|+-...- ...+...+.|+++|+++.
T Consensus 201 ~~~~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 201 KKASPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHhCCCCeEEEEECCCH-HHHHHHHHHhCcCcEEEE
Confidence 0112469999876554 345788999999999996
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.15 Score=48.31 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~ 226 (298)
.++|++||-.|+|. |..+..+|+..| .++++++.+++....+.+. .+. . .++.. +........+.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~---~Ga------~--~vi~~~~~~~~~~~~~~ 247 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINR---LGA------D--SFLVSTDPEKMKAAIGT 247 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHh---CCC------c--EEEcCCCHHHHHhhcCC
Confidence 56889999999987 888888898875 4788888776543322222 121 1 11110 00000000124
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++-........+...+.|++||+++.
T Consensus 248 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 248 MDYIIDTVSAVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCcEEEE
Confidence 89999776655566778999999999986
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.1 Score=47.94 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=40.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
-.+|+.|||-=+|||..+....++ + .+.+|+|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHh
Confidence 578999999999999877766665 4 6899999999999999999864
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.39 Score=45.44 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE--cCCCC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~--gD~~~---~~ 221 (298)
.+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. +.. .-+.... .+... ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~----Ga~-----~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKL----GAT-----DCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----CCC-----eEEcccccchhHHHHHHHH
Confidence 478899999999987 7888888888752 3799999999988888542 211 0011100 00000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
.. +.+|+++-............+.+++| |++++
T Consensus 252 ~~-~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 252 TD-GGVDYSFECIGNVNVMRAALECCHKGWGESII 285 (368)
T ss_pred hC-CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEE
Confidence 11 25899998777666777888999886 98876
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.22 Score=47.48 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-----CCC--
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRK-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-----~~~-- 219 (298)
.+++|++||-.|+|. |..+..+++..|. ..|+++|.+++..+.+++. +. .. ++... ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~l----Ga------~~--~i~~~~~~~~~~~~v 256 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKTF----GV------TD--FINPNDLSEPIQQVI 256 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----CC------cE--EEcccccchHHHHHH
Confidence 478899999999877 7788888887653 3688999999888777432 21 11 11110 000
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
.... +.+|+|+-............+.|++| |++++ ++
T Consensus 257 ~~~~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~-~G 295 (378)
T PLN02827 257 KRMTG-GGADYSFECVGDTGIATTALQSCSDGWGLTVT-LG 295 (378)
T ss_pred HHHhC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEE-EC
Confidence 0111 26899998777666677889999998 99986 44
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.11 Score=45.09 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~ 194 (298)
.+..+++... -.+|+.|||.=+|+|..+....++ + .+.+|+|++++.++.|++
T Consensus 179 ~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh---hccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHHHHHhcC
Confidence 3445555544 678999999999999977766665 4 589999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.02 Score=52.76 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCcHHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~-~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+..|.|+-+|-||+|. .+... |. ..|++.|.+|..++..++++..+... .+..++.||.+..-+. ...|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~R~~~~~-~~Ad 264 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDNRNPKPR-LRAD 264 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccccccCcc-ccch
Confidence 356789999999999998 55554 44 68999999999999999999886553 5566778887765444 6789
Q ss_pred EEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|..+.-. ++--..+.+.|||.|-=++.+..
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred heeeccccccccchHHHHHHhhhcCCcEEEEec
Confidence 98877532 33335567788875554444543
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.15 Score=48.21 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+++|.+||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ + +....+..........+....... ..
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~-~---ga~~~i~~~~~~~~~~~~~~~~~~-~g 254 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE-F---GATDFINPKDSDKPVSEVIREMTG-GG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-c---CCCcEeccccccchHHHHHHHHhC-CC
Confidence 378899999999876 7777888888652 379999999988888753 2 211000000000000000000112 36
Q ss_pred ccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
+|+|+-............+.|+++ |+++.
T Consensus 255 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 255 VDYSFECTGNADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CCEEEECCCChHHHHHHHHhcccCCCEEEE
Confidence 899997666556677788899886 99887
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.038 Score=54.01 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC----CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----WPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----~~~~ 224 (298)
-.++.+|||.=+++|.-++..|+.++.-.+|++.|.++..++..++|.+.++.. +.++..+.|+... ....
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHHHHhccccc
Confidence 445678999999999999999988765578999999999999999999887654 4566667776531 1122
Q ss_pred CCccEEEECCC--CchhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..||+|-.+.- ...+.+.+.+.++.||.|.++..+
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 57999988863 346779999999999999997644
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.06 Score=50.17 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=66.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRKGWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g--D~~~~~~~~ 224 (298)
.+.||.+|--+|.|. |.++..+|+.+| .+|+++|.+...-+.|-+++.. +. |+.. |....-.-.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGA---------d~--fv~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGA---------DV--FVDSTEDPDIMKAIM 244 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCc---------ce--eEEecCCHHHHHHHH
Confidence 378999999999876 999999999987 6999999998666666555432 21 2211 111000001
Q ss_pred CCccEEEECCC--CchhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+..|.++-+.. .++-++.+...||++|.+|+ ++-
T Consensus 245 ~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~-vg~ 280 (360)
T KOG0023|consen 245 KTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVL-VGL 280 (360)
T ss_pred HhhcCcceeeeeccccchHHHHHHhhcCCEEEE-EeC
Confidence 34555544444 66777889999999999998 443
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.4 Score=46.16 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=67.2
Q ss_pred cCCCCCEEEEEc-CCC-cHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc----CCCC-
Q 022372 148 NLKPGMHALDIG-SGT-GYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g----D~~~- 219 (298)
.+++|++||-+| +|. |..+..+++..+.. .+|+++|.+++.++.+++........ .+ ....++.. +...
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~G-a~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RG-IELLYVNPATIDDLHAT 248 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cC-ceEEEECCCccccHHHH
Confidence 367889999997 465 88888888875321 37999999999999987743110000 00 01111111 1000
Q ss_pred --CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 --GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 --~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......+|+++.............+.++++|.+++..+
T Consensus 249 v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 249 LMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 011224699998876666677888999999998776443
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.57 Score=44.06 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc----CCCC--
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g----D~~~-- 219 (298)
.+++|++||-.|+ | .|..+..+|+..| .+|++++.+++..+.+++.+ +. .. ++.. +..+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---Ga------~~--vi~~~~~~~~~~~i 221 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---GF------DE--AFNYKEEPDLDAAL 221 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---CC------CE--EEECCCcccHHHHH
Confidence 4788999999998 4 3888899999876 57999999988877765332 11 11 1111 1100
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... +.+|+++-...- .......+.|++||++++ ++
T Consensus 222 ~~~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~-~G 258 (348)
T PLN03154 222 KRYFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIAV-CG 258 (348)
T ss_pred HHHCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEEE-EC
Confidence 0112 368999876554 466788999999999986 44
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.41 Score=46.02 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~---~ 220 (298)
.++++++||-.|+|. |..+..+++..|. ..++..|.+++.++.|++. +. . .+... +..+ .
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----Ga------~--~v~~~~~~~~~~~v~~ 248 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----GC------E--TVDLSKDATLPEQIEQ 248 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----CC------e--EEecCCcccHHHHHHH
Confidence 478899999999887 7888888888764 3466778888888887652 11 1 11111 1000 0
Q ss_pred CCCCCCccEEEECCCCc--------------hhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++-....+ ...+...+.+++||++++
T Consensus 249 ~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 249 ILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred HcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 11224689998777654 367888999999999998
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.2 Score=49.90 Aligned_cols=93 Identities=26% Similarity=0.382 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE---cCCCCC------
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKG------ 220 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~---gD~~~~------ 220 (298)
++.+|+-+|+|. |..+..+++..| ..|+++|.+++..+.+++ + +. ..+++-. ++...+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-l---Ga------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-M---GA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------eEEeccccccccccccceeecC
Confidence 568999999998 888888888876 469999999998877765 2 11 1111110 110110
Q ss_pred ----------CC-CCCCccEEEECCC-----Cch-hHHHHHhccccCcEEEE
Q 022372 221 ----------WP-EFAPYDAIHVGAA-----APE-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ----------~~-~~~~fD~Ii~~~~-----~~~-l~~~l~~~LkpGG~Lvi 255 (298)
.. ....+|+|+.... .+. +.++..+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 01 1246999988872 222 45888999999999873
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.048 Score=53.30 Aligned_cols=104 Identities=24% Similarity=0.254 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-------C
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-------W 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-------~ 221 (298)
...+.++|-+|-|+|.+...+...+ +..+++++|++|++++.|+.++.... ..+.+++..|+... -
T Consensus 293 ~~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 293 LDTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred ccccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhcc
Confidence 3455689999999999999988776 45799999999999999999875421 13455666676642 1
Q ss_pred CCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECC
Q 022372 222 PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+...||+++.+-.- ..+...+...|.|.|.+++.+-.
T Consensus 366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 244689999876432 12335677899999999986643
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.33 Score=43.45 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=63.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+.++.+||-.|+|. |..+..+|+..+. .+|++++.+++..+.+++. +.. ..+.....+ ......
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~----~~~~~~ 159 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL----GPA-----DPVAADTAD----EIGGRG 159 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc----CCC-----ccccccchh----hhcCCC
Confidence 478899999999876 7778888887653 2499999999888766543 100 111000000 112246
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+|+.............+.|+++|+++.
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 160 ADVVIEASGSPSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCEEEEccCChHHHHHHHHHhcCCcEEEE
Confidence 99999775555667788999999999986
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.35 Score=45.53 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=77.1
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
-.+|++.+-- ....+.... .++|++|--+|+|. |..+..-|+..+. .+++++|++++.++.|++- +
T Consensus 164 ~llGCgV~TG----~Gav~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f----G-- 230 (366)
T COG1062 164 CLLGCGVTTG----IGAVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF----G-- 230 (366)
T ss_pred EEEeeeeccC----hHHhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc----C--
Confidence 3456654432 344556665 89999999999998 6666666777654 7999999999999999753 2
Q ss_pred CccCCCCEEEEEcCCC-------CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 203 PLLKEGSLSVHVGDGR-------KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~-------~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
-.+++..... ....+ +..|..+-.....+.++..++.++.+|..++
T Consensus 231 ------AT~~vn~~~~~~vv~~i~~~T~-gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 231 ------ATHFVNPKEVDDVVEAIVELTD-GGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred ------CceeecchhhhhHHHHHHHhcC-CCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 2233332111 11112 3567777777777788888888988998887
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.73 Score=43.51 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC----CCC---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRK--- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD----~~~--- 219 (298)
.+++|++||-.|+|. |..+..+++..|. .+|+++|.+++..+.+++ + +. ..+ +...+ ...
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~-l---Ga------~~~-i~~~~~~~~~~~~v~ 250 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK-F---GA------TDC-VNPKDHDKPIQQVLV 250 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-c---CC------CEE-EcccccchHHHHHHH
Confidence 378899999999876 7788888888652 379999999998887753 1 21 111 11111 000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
.... +.+|+|+-............+.|+++ |+++.
T Consensus 251 ~~~~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 251 EMTD-GGVDYTFECIGNVKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred HHhC-CCCcEEEECCCChHHHHHHHHhhccCCCeEEE
Confidence 0112 36899998766556777888999987 98886
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.32 Score=44.63 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ + +. ..+... + .. .....
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~------~~~~~~--~--~~-~~~~~ 214 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-L---GV------ETVLPD--E--AE-SEGGG 214 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CC------cEEeCc--c--cc-ccCCC
Confidence 477889999998765 667777777765 468999999888888765 2 21 111111 0 11 22356
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++....-....+...+.|+++|+++.
T Consensus 215 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 215 FDVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 99999876555566788889999999997
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.21 Score=47.42 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 230 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~I 230 (298)
..+|+|.=+|+|.=++..+.-.+. .+|+.-|++|++++.+++|+..+.. .+...++.|+...... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEE
Confidence 579999999999999888887644 3899999999999999999988622 3555666665432222 3679999
Q ss_pred EECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
=.++-- .-+.+.+.+.+|.||.|.++-.+
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 666532 24558888999999999986543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.25 Score=44.06 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
-.+|+.|||-=||+|..+....+. + .+++|+|++++..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHH
Confidence 578999999999999877766665 3 58999999999999999998763
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.07 Score=50.30 Aligned_cols=100 Identities=22% Similarity=0.182 Sum_probs=61.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCCCCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~~~~fD~ 229 (298)
.++||+|.|.|.-...+-..++.-..++-+|.++.+-+....-...... .......+|+.. .++....|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t------~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST------EKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc------ccCCCCCCccchhccCCCccceeeh
Confidence 5799999999987777767664335788888887665444322211111 122233333332 2334456887
Q ss_pred EEECCCC-----ch----hHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAA-----PE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~-----~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+++..-+ +. ..+.++..+.|||.||+.-+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 7665432 22 45788999999999999543
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.53 Score=43.77 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=63.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE--EEcCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRKGWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~--~~gD~~~~~~~~ 224 (298)
.++++.+||-.|+|. |..+..+|+..|. ..|++++.+++..+.+++. +....+......+ ....... ....
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~-~~~~ 232 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAE-LLGG 232 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHH-HhCC
Confidence 478899999988876 7888888888652 2388998888877766442 2110000000000 0000001 1222
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+|+.............+.|+++|+++.
T Consensus 233 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 233 KGPDVVIECTGAESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 4599999876655567888999999999886
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.27 Score=46.33 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++|.+||-.|+|. |..+..+++..| .+++.++.+++..+.+.+.+ +. ..+ +...+..........+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~---Ga------~~~-i~~~~~~~~~~~~~~~ 245 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHL---GA------DDY-LVSSDAAEMQEAADSL 245 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhc---CC------cEE-ecCCChHHHHHhcCCC
Confidence 46789999998876 788888888865 46888888877655554332 21 111 1111100000001258
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+++-........+...+.|++||+++. ++
T Consensus 246 D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G 275 (357)
T PLN02514 246 DYIIDTVPVFHPLEPYLSLLKLDGKLIL-MG 275 (357)
T ss_pred cEEEECCCchHHHHHHHHHhccCCEEEE-EC
Confidence 9998776655667778899999999887 44
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.86 Score=42.97 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC----C----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG----R---- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~----~---- 218 (298)
.+++|++||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + +. . .++.... .
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~-~---Ga------~--~~i~~~~~~~~~~~~v 250 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK-F---GV------T--EFVNPKDHDKPVQEVI 250 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-c---CC------c--eEEcccccchhHHHHH
Confidence 478899999999876 7777888887652 379999999998888754 2 21 1 1111110 0
Q ss_pred CCCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
..... +.+|+++-............+.+++| |++++
T Consensus 251 ~~~~~-~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 251 AEMTG-GGVDYSFECTGNIDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred HHHhC-CCCCEEEECCCChHHHHHHHHHhhcCCCEEEE
Confidence 00112 36899987766666677788899996 98876
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.2 Score=41.63 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---------
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--------- 218 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--------- 218 (298)
..++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ .+. .. ++.....
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~------~~--vi~~~~~~~~~~~~~i 241 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELARE----FGA------DA--TIDIDELPDPQRRAIV 241 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCC------Ce--EEcCcccccHHHHHHH
Confidence 34788999999876 7777888888653 389999988887766642 121 11 1111100
Q ss_pred CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
........+|+++.............+.|+++|+++.
T Consensus 242 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 242 RDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred HHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEE
Confidence 0111224699999766555566788899999999986
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.22 Score=46.18 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
++.+||..|+|. |..+..+++..|. .++++++.+++..+.+++. +....+.... .+..........+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~----g~~~vi~~~~-----~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAM----GADETVNLAR-----DPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCCEEEcCCc-----hhhhhhhccCCCccE
Confidence 789999988876 7777888887642 2789999988877765432 1110010000 001111112235999
Q ss_pred EEECCCCchhHHHHHhccccCcEEEE
Q 022372 230 IHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
++.........+.+.+.|+++|+++.
T Consensus 235 vld~~g~~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 235 VFEASGAPAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 99876655567888999999999986
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.75 Score=40.56 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcH--HHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGY--LTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~--~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
.+.++..|.. -.....++++.++.|. .+..|+... ..++++++|-.+++.....++.+...+.. +.++|+.
T Consensus 29 ~aEfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-----~~vEfvv 102 (218)
T PF07279_consen 29 VAEFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-----DVVEFVV 102 (218)
T ss_pred HHHHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-----ccceEEe
Confidence 4555666652 2233567888766442 344443221 23479999999998888888888776543 5578888
Q ss_pred cCCCC-CCCCCCCccEEEECCCCchhHHHHHhccc--cCcEEEE
Q 022372 215 GDGRK-GWPEFAPYDAIHVGAAAPEIPQALIDQLK--PGGRMVI 255 (298)
Q Consensus 215 gD~~~-~~~~~~~fD~Ii~~~~~~~l~~~l~~~Lk--pGG~Lvi 255 (298)
++..+ ..+.....|.++++.-.++..+.+++.++ |.|-+++
T Consensus 103 g~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 103 GEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred cCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence 88543 33344578999999998877766666554 4566554
|
The function of this family is unknown. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.84 Score=42.21 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.++++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++. +.. .-+.....+... ....
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~i~~~~~ 233 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEA----GAT-----DIINPKNGDIVEQILELTG 233 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHh----CCc-----EEEcCCcchHHHHHHHHcC
Confidence 467889999988764 7777888887642 3788888888777666532 110 000111111000 0112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.........+...+.|+++|+++.
T Consensus 234 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 234 GRGVDCVIEAVGFEETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CCCCcEEEEccCCHHHHHHHHHHhhcCCEEEE
Confidence 24699998765544577888899999999885
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.24 Score=45.98 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.+.++.+||-.|+|. |..+..+++..| .+++.++.+++..+.+++ + +.. .++.....+ ....
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~--------~~i~~~~~~~~~~~~~ 225 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK-L---GAH--------HYIDTSKEDVAEALQE 225 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH-c---CCc--------EEecCCCccHHHHHHh
Confidence 377889999999766 777788888765 479999999887777743 2 111 111111000 0001
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.............+.|+++|+++.
T Consensus 226 ~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 226 LGGAKLILATAPNAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred cCCCCEEEECCCchHHHHHHHHHcccCCEEEE
Confidence 13589999765445667788999999999886
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.8 Score=40.07 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCC--CEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----
Q 022372 149 LKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----- 219 (298)
Q Consensus 149 l~~g--~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----- 219 (298)
++++ ++||-.|+ | .|..+..+|+..|. .+|++++.+++..+.+++.+. . .. ++......
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~lG---a------~~--vi~~~~~~~~~~i 217 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSELG---F------DA--AINYKTDNVAERL 217 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhcC---C------cE--EEECCCCCHHHHH
Confidence 5555 89999997 3 47888888988752 279999999888777765432 1 11 11111100
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... ..+|+|+....-. ......+.|+++|+++.
T Consensus 218 ~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 218 RELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEEE
Confidence 0112 4699999765544 35788999999999986
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.5 Score=44.03 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHHHHHHHHccCCC------CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHH
Q 022372 138 HATCLQLLEENLKP------GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV 190 (298)
Q Consensus 138 ~~~~l~~L~~~l~~------g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~ 190 (298)
...+++.|....++ ..++|.-|||.|+++..|+..+ . .+-|-|+|--|+-
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFMLI 186 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-c--cccccHHHHHHHH
Confidence 44466666544443 5689999999999999999984 3 4556677766653
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.36 Score=47.83 Aligned_cols=95 Identities=23% Similarity=0.213 Sum_probs=66.0
Q ss_pred CEEEEEcCCCcHHHHHH---HHHcCCCcEEEEEeCCHHHHHHHHH-HHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 153 MHALDIGSGTGYLTACF---ALMVGPQGRAVGVEHIPELVVSSIQ-NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~L---a~~~g~~~~V~giD~s~~~l~~A~~-~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++-+|+|.|-+.... ++....+-+++++|-+|.++-..+. +...++ .+|+++.+|.+...++....|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-------~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-------NRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-------CeeEEEeccccccCCchhhcc
Confidence 35789999999765443 4443344689999999999877654 233332 689999999988665446789
Q ss_pred EEEECCC--------CchhHHHHHhccccCcEEE
Q 022372 229 AIHVGAA--------APEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~--------~~~l~~~l~~~LkpGG~Lv 254 (298)
.+++-.- -++-.+.+.+.|||.|+-+
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 8854321 1345567788999997654
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.9 Score=39.49 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=62.4
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|.+||-.|. | .|..+..+++..| .+|++++.+++..+.+++ + +. . .++.....+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~-~---Ga------~--~vi~~~~~~~~~~v~ 205 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE-L---GF------D--AVFNYKTVSLEEALK 205 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------C--EEEeCCCccHHHHHH
Confidence 4788999999984 3 3778888898875 479999999888777764 2 21 1 111111000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... ..+|+|+-...- .......+.|+++|+++.
T Consensus 206 ~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 206 EAAP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHCC-CCcEEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 0112 468999876554 566888999999999976
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.33 Score=44.44 Aligned_cols=70 Identities=16% Similarity=0.056 Sum_probs=51.5
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 231 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii 231 (298)
+|+|+-||.|.++.-+.+. |- ..+.++|+++.+++..+.|... . +..+|..+.... ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~~-----------~-~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFPN-----------K-LIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCCC-----------C-CccCccccCchhhcCCCCCEEE
Confidence 6899999999998888776 32 4789999999999888877532 1 445565543322 25699999
Q ss_pred ECCCCc
Q 022372 232 VGAAAP 237 (298)
Q Consensus 232 ~~~~~~ 237 (298)
.+.+..
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 998763
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.86 Score=41.90 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----~~~ 222 (298)
.+.++.+||..|+|. |..+..+++..|. ..++.++.+++..+.+++. +. . .++..+... ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~--~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKKL----GA------T--ETVDPSREDPEAQKED 222 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CC------e--EEecCCCCCHHHHHHh
Confidence 477889999998764 6677777887642 2388899998877776432 11 1 122111111 011
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+++.............+.|+++|+++.
T Consensus 223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 225699999876555677888899999999876
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.5 Score=40.62 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc-CCC---CC
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG-DGR---KG 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v-~~~~g-D~~---~~ 220 (298)
.+++|++||-.|+ | .|..+..+++..| .+|++++.+++..+.+++.+. . ..+ ..... +.. ..
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lG---a------~~vi~~~~~~~~~~~i~~ 216 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLG---F------DDAFNYKEEPDLDAALKR 216 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcC---C------ceeEEcCCcccHHHHHHH
Confidence 4789999999997 3 3788888898876 579999988888777765332 1 111 10000 110 01
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
... ..+|+|+-...- .......+.|+++|+++.
T Consensus 217 ~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 217 YFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred hCC-CCcEEEEECCCH-HHHHHHHHHhccCcEEEE
Confidence 112 468999876554 566788999999999986
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.3 Score=40.72 Aligned_cols=92 Identities=25% Similarity=0.254 Sum_probs=61.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ + +. . .++..+. . ....
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~--~~~~~~~--~--~~~~ 225 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE-L---GA------D--WAGDSDD--L--PPEP 225 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-h---CC------c--EEeccCc--c--CCCc
Confidence 477889999998876 666677777755 589999888876666632 1 11 1 1111111 0 1246
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|+++.........+...+.|+++|+++. ++
T Consensus 226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~-~g 256 (329)
T cd08298 226 LDAAIIFAPVGALVPAALRAVKKGGRVVL-AG 256 (329)
T ss_pred ccEEEEcCCcHHHHHHHHHHhhcCCEEEE-Ec
Confidence 89888754445677889999999999995 44
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.1 Score=41.54 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.+.++.+||..|+|. |..+..+|+..+ .+|+++..+++..+.+++. +.. .-+.....+... ....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~----g~~-----~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFAREL----GAD-----DTINVGDEDVAARLRELTD 224 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHh----CCC-----EEecCcccCHHHHHHHHhC
Confidence 478899999998875 788888888865 5799998888877776432 111 001111111000 1112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++....-......+.+.|+++|+++.
T Consensus 225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 24699999876555677888999999999885
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.2 Score=41.89 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=64.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++. +. . .++..+... .
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~~----g~------~--~~i~~~~~~~~~~v~~ 249 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKEL----GA------T--HVINPKEEDLVAAIRE 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----CC------c--EEecCCCcCHHHHHHH
Confidence 367889999998876 7888888888764 3699999998887766532 11 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.. ...+|+|+...........+.+.|+++|+++.
T Consensus 250 ~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 250 IT-GGGVDYALDTTGVPAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred Hh-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEE
Confidence 11 24689999876656677888999999999886
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.26 Score=46.23 Aligned_cols=97 Identities=23% Similarity=0.189 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
.+++|++||-.|..+ |.++..||+..|. +++++-.+++..+.+++. +.. .-+.+...|..+ ...
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~l----GAd-----~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKEL----GAD-----HVINYREEDFVEQVRELT 207 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHhc----CCC-----EEEcCCcccHHHHHHHHc
Confidence 478899999999544 7788999999753 677777677666655432 211 112222222211 122
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
....+|+|+..-.-+ ......+.|+++|+++..
T Consensus 208 ~g~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 208 GGKGVDVVLDTVGGD-TFAASLAALAPGGRLVSI 240 (326)
T ss_pred CCCCceEEEECCCHH-HHHHHHHHhccCCEEEEE
Confidence 224699998776664 444588899999999984
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.3 Score=41.30 Aligned_cols=98 Identities=23% Similarity=0.196 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.++++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + +... -+.....+..+ ....
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~-~---ga~~-----~i~~~~~~~~~~l~~~~~ 238 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE-L---GATI-----VLDPTEVDVVAEVRKLTG 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-h---CCCE-----EECCCccCHHHHHHHHhC
Confidence 377889999998765 6777778887642 278999999988887754 2 2110 00101111000 0112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++-........+...+.|+++|+++.
T Consensus 239 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 239 GGGVDVSFDCAGVQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCCEEEE
Confidence 23599999877665667888999999999886
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.3 Score=39.39 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--~~~~~~~ 225 (298)
..++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++. +.. .-+.....+.. ......+
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~~~~~ 230 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAKKM----GAD-----VVINPREEDVVEVKSVTDGT 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----Ccc-----eeeCcccccHHHHHHHcCCC
Confidence 56788998888765 7788888887652 2688888777777665532 110 00000000110 0012224
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+|+....-.+....+.+.|+++|+++.
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 699999876655677788999999999876
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.3 Score=40.73 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~ 225 (298)
.+.++.+||-.|+|. |..+..+++..| .+|++++.+++..+.+++ . +. .. ++........ ...+
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~--~~~~~~~~~~~~~~~ 224 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK-L---GA------DE--VVDSGAELDEQAAAG 224 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-h---CC------cE--EeccCCcchHHhccC
Confidence 377889999999874 777777788765 579999999988777643 2 11 11 1111000000 0114
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+|+++...........+.+.|+++|+++..
T Consensus 225 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 225 GADVILVTVVSGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCCEEEECCCcHHHHHHHHHhcccCCEEEEE
Confidence 6899987655556778889999999999873
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.41 Score=45.70 Aligned_cols=92 Identities=22% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHH-HHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCC
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~-l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~ 226 (298)
++|++||-.|+|. |..+..+|+..| .+|++++.+++. .+.+++ .+. +. ++.. +........+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~----lGa------~~--~i~~~~~~~v~~~~~~ 242 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR----LGA------DS--FLVTTDSQKMKEAVGT 242 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh----CCC------cE--EEcCcCHHHHHHhhCC
Confidence 5789999999987 788888898876 478888877543 344422 221 11 1110 10000000124
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++-........+...+.+++||+++.
T Consensus 243 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 243 MDFIIDTVSAEHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CcEEEECCCcHHHHHHHHHhhcCCCEEEE
Confidence 89998877666667788899999999986
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=40.54 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=57.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHc---C-CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhccC
Q 022372 153 MHALDIGSGTGYLTACFALMV---G-PQGRAVGVEHIP--------------------------ELVVSSIQNIEKSAAA 202 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~---g-~~~~V~giD~s~--------------------------~~l~~A~~~~~~~~~~ 202 (298)
..|+|.|+-.|..+..++..+ + ++.++++.|.=+ ...+..++++.+.+
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g-- 153 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG-- 153 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT--
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC--
Confidence 479999999998776665443 2 345788877321 12333344443333
Q ss_pred CccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCc----hhHHHHHhccccCcEEEE
Q 022372 203 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi 255 (298)
+..++++++.|...+..+. ..++-++..+..+- ..++.++..|.|||++++
T Consensus 154 --l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 154 --LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp --TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred --CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEE
Confidence 2237899999997654442 24677778777763 455788899999999997
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.7 Score=40.79 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
+.++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++ + +.. .++..+... ..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~-~~vi~~~~s~~~~~~~~~-~---g~~--------~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGA-SPIIAVDVRDEKLAKAKE-L---GAT--------HTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCc--------eEecCCcccHHHHHHHH
Confidence 56788998888764 7777788887652 248999988887776643 1 111 111111100 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.....+|+|+....-....+...+.|+++|+++..
T Consensus 252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEE
Confidence 12246999997655444677889999999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.08 E-value=1.5 Score=40.69 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~~~~~~fD 228 (298)
.+.+|+-+|.|. |...+..++..| .+|+.+|.+++..+.+++ .+ .++.. .+..+ ....+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~----~G---------~~~~~~~~l~~---~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITE----MG---------LSPFHLSELAE---EVGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cC---------CeeecHHHHHH---HhCCCC
Confidence 578999999987 555555555554 589999999876555432 11 11111 11111 113689
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+...+..-+.++..+.+++|+.++=
T Consensus 213 iVI~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECCChhhhhHHHHHcCCCCcEEEE
Confidence 999987655566788889999887764
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.9 Score=41.05 Aligned_cols=101 Identities=23% Similarity=0.257 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-CccCCCCEEEEEcCCCCCC---CCCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVHVGDGRKGW---PEFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l~~~~v~~~~gD~~~~~---~~~~~ 226 (298)
...+|||+|+|+|..++.+|...+ ..|+..|... .++..+.+...+... ..++ ..+.+..-+..... .-...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCC
Confidence 345799999999988888888654 5777777544 333333332222111 0011 13333322222111 11123
Q ss_pred -ccEEEECCCC------chhHHHHHhccccCcEEEE
Q 022372 227 -YDAIHVGAAA------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 -fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi 255 (298)
||+|+...+. +.+..-+...|..+|.+++
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 8888777654 4455677778888885444
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.1 Score=46.01 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=61.4
Q ss_pred EEEEEcCCCcHHHHHH---HHHcCCCcEEEEEeCCHHHHHHHHHHH---HHhccCCccCCCCEEEEEcCCCCCCCC----
Q 022372 154 HALDIGSGTGYLTACF---ALMVGPQGRAVGVEHIPELVVSSIQNI---EKSAAAPLLKEGSLSVHVGDGRKGWPE---- 223 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~L---a~~~g~~~~V~giD~s~~~l~~A~~~~---~~~~~~~~l~~~~v~~~~gD~~~~~~~---- 223 (298)
.|+.+|+|.|-+.... ++..+-..++++||-++..+.....+. ..|........+.|+++..|.+....+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999765443 333344568999999976554444432 223110001125699999999875322
Q ss_pred -------CCCccEEEECC--------CCchhHHHHHhcccc----CcE
Q 022372 224 -------FAPYDAIHVGA--------AAPEIPQALIDQLKP----GGR 252 (298)
Q Consensus 224 -------~~~fD~Ii~~~--------~~~~l~~~l~~~Lkp----GG~ 252 (298)
.+++|+|++-. -.++-++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 13689997632 124555677778887 776
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=91.84 E-value=3.1 Score=38.51 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---CCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~---~~~~~ 223 (298)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++. +.. .-+.....+.. .....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~i~~~~~ 232 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKKL----GAT-----HTVNSAKGDAIEQVLELTD 232 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----CCC-----ceeccccccHHHHHHHHhC
Confidence 367889998888765 6677778887643 4688899888776666531 211 00111111100 00112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.........+.+.+.|+++|+++.
T Consensus 233 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 233 GRGVDVVIEAVGIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCcEEEE
Confidence 24699998765545566788899999999885
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.65 E-value=3.1 Score=38.62 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
+.++.+||-.|+|. |..+..+|+..|. .+|+.++.+++..+.+++ + +. . .++...... ..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~------~--~~~~~~~~~~~~~~~~~ 239 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA-A---GA------D--VVVNGSDPDAAKRIIKA 239 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CC------c--EEecCCCccHHHHHHHH
Confidence 45788999998875 7788888888653 378899988887777643 2 11 1 111111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.. +.+|+++.............+.|+++|+++.
T Consensus 240 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 240 AG-GGVDAVIDFVNNSATASLAFDILAKGGKLVL 272 (350)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence 12 2689999776656677888999999999986
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.62 E-value=3.1 Score=38.58 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
...++.+||-.|+|. |..+..+++..|. ..|++++.+++..+.+++. +.. .-+.....+..+ ....
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~l~~~~~ 227 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGA-YPVIVSDPNEYRLELAKKM----GAT-----YVVNPFKEDVVKEVADLTD 227 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CCc-----EEEcccccCHHHHHHHhcC
Confidence 356788988887764 6777778887652 2488888887776665432 110 001111111100 1122
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.............+.|+++|+++.
T Consensus 228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEE
Confidence 34699999875555677888999999999876
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.58 Score=43.30 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHH-cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~-~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~ 224 (298)
.+++|.+||-.|+|. |..+..+++. .|. ..+++++.+++..+.+++. +....+. ....+...... ..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~----Ga~~~i~-----~~~~~~~~~~~~~g 226 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKES----GADWVIN-----NAQEPLGEALEEKG 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHh----CCcEEec-----CccccHHHHHhcCC
Confidence 477899999999765 6676777774 343 3688899999888777542 2110011 00001001111 11
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+++.............+.|+++|+++.
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVL 257 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 2356887765545567888899999999987
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.97 Score=42.93 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=51.3
Q ss_pred CccccC-CCccChHHHHHH--------HHHHHHccCCC-CCEEEEEcCCCcHHHHHHHHHc---CC----CcEEEEEeCC
Q 022372 123 PMAIGY-NATISAPHMHAT--------CLQLLEENLKP-GMHALDIGSGTGYLTACFALMV---GP----QGRAVGVEHI 185 (298)
Q Consensus 123 ~~~~g~-~~~is~p~~~~~--------~l~~L~~~l~~-g~~VLDiG~GsG~~t~~La~~~---g~----~~~V~giD~s 185 (298)
..++|. |-.+++|.+... +++.+.....| .-.++|+|+|.|.++.-+.+.. .| ..++.-+|.|
T Consensus 39 ~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 39 AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 444543 456667764433 33333322233 4579999999999988776654 22 3689999999
Q ss_pred HHHHHHHHHHHHH
Q 022372 186 PELVVSSIQNIEK 198 (298)
Q Consensus 186 ~~~l~~A~~~~~~ 198 (298)
+++.+.-+++++.
T Consensus 119 ~~L~~~Qk~~L~~ 131 (370)
T COG1565 119 PELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998888765
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.42 E-value=3.2 Score=38.94 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=62.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+.++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + +.. .++...... .
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~-~---g~~--------~vv~~~~~~~~~~l~~ 245 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR-F---GAT--------HTVNASEDDAVEAVRD 245 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH-h---CCe--------EEeCCCCccHHHHHHH
Confidence 467889999998764 7777888887652 248999888887766632 1 111 111111100 1
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+...+|+++....-........+.|+++|+++..
T Consensus 246 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 246 LTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 112356999987665456678889999999999863
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=91.35 E-value=2 Score=40.51 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCC---CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGR---KGW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g--D~~---~~~ 221 (298)
.++++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++ + +.. ..+..... +.. ...
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~-----~~v~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-L---GAT-----ECINPRDQDKPIVEVLTEM 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCC-----eecccccccchHHHHHHHH
Confidence 477899999998876 7777888888653 358889988888777743 2 111 00111111 100 001
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccc-cCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi 255 (298)
.. +.+|+++.............+.|+ ++|+++.
T Consensus 250 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 250 TD-GGVDYAFEVIGSADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEE
Confidence 12 468999876554456677888999 9999886
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.34 Score=46.17 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~ 194 (298)
+-+.|.|+|+|.||++..++-..+ -.|++||-+....++|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 446899999999999999987654 699999999888777754
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.66 Score=44.97 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
...|++|+-+|+|. |...+..++..| .+|+++|.++.....|+. .+. .+. +..+.. ...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~----~G~---------~v~--~leeal---~~a 251 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAM----DGF---------RVM--TMEEAA---KIG 251 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHh----cCC---------EeC--CHHHHH---hcC
Confidence 35789999999998 877777777665 589999999865444432 111 111 111111 246
Q ss_pred cEEEECCCCchhH-HHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIP-QALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi 255 (298)
|+++......++. .+....+|+|++++.
T Consensus 252 DVVItaTG~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 252 DIFITATGNKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred CEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 9988877777765 458899999998876
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.96 Score=44.64 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.-.|++|+-+|+|. |...+..++.+| .+|+.+|.++.....+... +. .+. +..+.. ...
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~----G~---------~vv--~leEal---~~A 310 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALME----GY---------QVL--TLEDVV---SEA 310 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhc----CC---------eec--cHHHHH---hhC
Confidence 35689999999998 777777777665 5899999998654444221 11 111 111111 247
Q ss_pred cEEEECCCCchh-HHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEI-PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l-~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+......++ ....++.+|+||+++- ++.
T Consensus 311 DVVI~tTGt~~vI~~e~L~~MK~GAiLiN-vGr 342 (477)
T PLN02494 311 DIFVTTTGNKDIIMVDHMRKMKNNAIVCN-IGH 342 (477)
T ss_pred CEEEECCCCccchHHHHHhcCCCCCEEEE-cCC
Confidence 999988777775 4888999999999887 443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.68 Score=45.18 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
-.|++|+-+|+|. |...+..++..| .+|+.+|.++.....+... +. ++. +..+.. ..+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~----G~---------~v~--~l~eal---~~aD 269 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMD----GF---------RVM--TMEEAA---ELGD 269 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhc----CC---------Eec--CHHHHH---hCCC
Confidence 3789999999997 777777777655 5899999998765444221 11 111 111111 2579
Q ss_pred EEEECCCCchhH-HHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIP-QALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi 255 (298)
+|+......++. ....+.+|+|++++.
T Consensus 270 VVI~aTG~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 270 IFVTATGNKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCCEEEE
Confidence 998887766666 478899999998876
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.89 E-value=1.9 Score=36.45 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=60.6
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEE--EeCCHHHHHHH---HHHHHHhccCCccCCCCEEEEE-cCCCCCC--C--CCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVG--VEHIPELVVSS---IQNIEKSAAAPLLKEGSLSVHV-GDGRKGW--P--EFAP 226 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~g--iD~s~~~l~~A---~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~--~--~~~~ 226 (298)
-||=|.=.++..|++..+....+++ .|..++..+.- .+++... ....+.++. -|+.... . ...+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L------~~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL------RELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH------hhcCCccccCCCCCcccccccccCCc
Confidence 4677777788999988764445555 56555555433 3455442 113333332 3444321 1 3468
Q ss_pred ccEEEECCCCch-------------------hHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~~~-------------------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||.|+-+.+... .++.+.+.|+++|.+.+++-++
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999999987422 2356778999999999998765
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=90.83 E-value=2 Score=39.71 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++.+||..|+|. |..+..+|+..|- ..+++++.+++..+.+++ .+....+...+.. ..... .......
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~--~~~~~-~~~~~~~ 227 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVARE----LGADDTINPKEED--VEKVR-ELTEGRG 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCCEEecCcccc--HHHHH-HHhCCCC
Confidence 477889999998766 7788888887652 248999888877666532 1111000000000 00000 1122235
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++...........+.+.|+++|+++.
T Consensus 228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAAGSPATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 99999875555677888999999999876
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.5 Score=45.21 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
++.+|+-+|+|. |..++..++..| .+|+.+|.+++..+.+...+. ..+.....+.......-..+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g----------~~v~~~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFG----------GRIHTRYSNAYEIEDAVKRADL 233 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcC----------ceeEeccCCHHHHHHHHccCCE
Confidence 346799999986 777777777765 479999999887666544321 1111111110000001135899
Q ss_pred EEECCCC-----ch-hHHHHHhccccCcEEEE
Q 022372 230 IHVGAAA-----PE-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~-----~~-l~~~l~~~LkpGG~Lvi 255 (298)
|+..... +. +.++..+.+|+|++++-
T Consensus 234 VI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 234 LIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 9887522 22 34778888999988775
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.7 Score=38.77 Aligned_cols=94 Identities=22% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-----CCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----KGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-----~~~~ 222 (298)
+.++.+||-.|+|+ |..+..+++..+. .+|++++.+++..+.+++ .+.. .++..+.. ....
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~i~~~~ 231 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGAD--------HVLNASDDVVEEVRELT 231 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCc--------EEEcCCccHHHHHHHHh
Confidence 66789999999765 6666777777642 478889888877666532 2211 11111100 0112
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+|+....-....+...+.|+++|+++.
T Consensus 232 ~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 232 GGRGADAVIDFVGSDETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 224699999766655667888999999999986
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.58 Score=41.80 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=61.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCC----C----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC----
Q 022372 153 MHALDIGSGTGYLTACFALMVGP----Q----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---- 220 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~----~----~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---- 220 (298)
.+|+|+.+..|..+..|++.+.. . ..+++||+.+- -..+-|.-+++|....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------------aPI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------------APIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------------CccCceEEeecccCCHhHHH
Confidence 58999999999999999987633 1 13899998652 1225677788887752
Q ss_pred ----CCCCCCccEEEECCCC-----chhH------------HHHHhccccCcEEEEEE
Q 022372 221 ----WPEFAPYDAIHVGAAA-----PEIP------------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 221 ----~~~~~~fD~Ii~~~~~-----~~l~------------~~l~~~LkpGG~Lvi~v 257 (298)
.+..++.|+|+|+++- +++- .-....|||||.+|.-+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 2334688999999864 2222 11235799999999855
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.77 Score=42.85 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=74.1
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 152 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
..+|.-+|-|. |..++.+|-.++ +.|+-+|++.+.++.....+. .+++............-...|++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~----------~rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFG----------GRVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhC----------ceeEEEEcCHHHHHHHhhhccEE
Confidence 35788899997 899999888665 799999999988877655432 46777766554432233467887
Q ss_pred EECCC-----Cch-hHHHHHhccccCcEEEEEECC-C-ceeEEEEEEcCCCCeEEEE
Q 022372 231 HVGAA-----APE-IPQALIDQLKPGGRMVIPVGN-I-FQDLKVVDKNQDGSLSIWS 279 (298)
Q Consensus 231 i~~~~-----~~~-l~~~l~~~LkpGG~Lvi~v~~-~-~q~~~~~~~~~~g~~~~~~ 279 (298)
+..-- .+. +.+++.+++|||++++=.--+ + .-+-...+...+-.+..+.
T Consensus 236 IgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~g 292 (371)
T COG0686 236 IGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDG 292 (371)
T ss_pred EEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecC
Confidence 54322 233 458899999999998742212 1 1222344444455555543
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.4 Score=39.66 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-C
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-D 216 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D 216 (298)
..+..... ++||.++--+|.|. |...+.-++..|. ++++|+|++++..+.|++- +. .++++. |
T Consensus 182 GAa~~~Ak--v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~f----Ga--------Te~iNp~d 246 (375)
T KOG0022|consen 182 GAAWNTAK--VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKEF----GA--------TEFINPKD 246 (375)
T ss_pred hhhhhhcc--cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHhc----Cc--------ceecChhh
Confidence 33444444 89999999999998 5444555666544 7999999999999998753 21 122221 1
Q ss_pred CCCCC------CCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 217 GRKGW------PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 217 ~~~~~------~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
..+.. ..++.+|.-+-.....+++++.....+.| |.-++
T Consensus 247 ~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 247 LKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred ccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 11100 11267888887777778888888888888 77666
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=90.12 E-value=5.8 Score=39.50 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
+..++...+.+.+.+...|+..|.|..||+|.+.....+..+ ....++|-|..+.+...++.++.-++.. .+.
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~----~~t 274 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID----YAN 274 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC----ccc
Confidence 334444444454442233667999999999987765443322 1246899999999999999887554321 122
Q ss_pred EEEEEcCCCCC--CCCCCCccEEEECCCC
Q 022372 210 LSVHVGDGRKG--WPEFAPYDAIHVGAAA 236 (298)
Q Consensus 210 v~~~~gD~~~~--~~~~~~fD~Ii~~~~~ 236 (298)
.....+|.... +....+||.|+++++.
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf 303 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPY 303 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCc
Confidence 33334454432 1123468888877753
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.59 Score=46.11 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=50.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHH----HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE----LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~----~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
..|+|..+|.|.+++.|... + |...-..+. -+...- ..|+ +-+. .|.-+.+ .-..+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIy----dRGL--------IG~y-hDWCE~fsTYPRTY 428 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIY----DRGL--------IGVY-HDWCEAFSTYPRTY 428 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhh----hccc--------chhc-cchhhccCCCCcch
Confidence 37999999999999998764 2 444333332 111111 1111 1111 1211211 123689
Q ss_pred cEEEECCCCc---------hhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAP---------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~---------~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+++..+. .+.-++-|.|+|||.+++
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 9999987653 455678899999999998
|
; GO: 0008168 methyltransferase activity |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.9 Score=40.88 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=37.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCC-------cEEEEEeCCHHHHHHHHHHHHH
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQ-------GRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~-------~~V~giD~s~~~l~~A~~~~~~ 198 (298)
-+|+|+|+|+|.++..+.+.+... .+++.+|.|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 699999999999999988876432 4899999999999888888755
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.7 Score=33.64 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCccEEEECC
Q 022372 160 SGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGA 234 (298)
Q Consensus 160 ~GsG~~t~~La~~~g~~~-~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~fD~Ii~~~ 234 (298)
||.|..+..+++.+.... .|+.+|.+++.++.+++. .+.++.||..+.. ..-...|.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 455677777777664445 899999999998887643 3578999988621 1224688888776
Q ss_pred CCchhH---HHHHhccccCcEEEEEECCC
Q 022372 235 AAPEIP---QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 235 ~~~~l~---~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.-...- ....+.+.|...++.-+.+.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 654322 33456667888888876653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.96 E-value=4.3 Score=38.08 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE---cCCCCC---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKG--- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~---gD~~~~--- 220 (298)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++. +. +.+.... .+....
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~~~~~~~~~~~~~~~~~~~ 246 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQL----GA------DEIVLVSTNIEDVESEVEE 246 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----CC------CEEEecCcccccHHHHHHH
Confidence 467889999998764 7777888887653 3588999888777766542 21 1111110 011000
Q ss_pred C--CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 W--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~--~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
. ...+.+|+|+....-........+.|+++|+++.
T Consensus 247 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 247 IQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCL 283 (364)
T ss_pred HhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 0 1124689998876545667888999999999775
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.6 Score=37.95 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++ + +.. .++..+...
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~-~---g~~--------~~~~~~~~~~~~~i~ 227 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK-L---GAD--------YTIDAAEEDLVEKVR 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH-h---CCc--------EEecCCccCHHHHHH
Confidence 378899999998763 777777888765 35 8888888887776642 1 111 111111000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.......+|+|+.............+.|+++|+++..
T Consensus 228 ~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 228 ELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 0112245899997766555777888999999999863
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.9 Score=43.53 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc-CCccC--CCCEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLK--EGSLS 211 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~-~~~l~--~~~v~ 211 (298)
+...+.+.+.+. +++++...|+|+|.|.+...+|...+ ...-+|+|+.+...+.|..+.....- ...++ ...+.
T Consensus 178 ~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 178 LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 344555666666 89999999999999999988887753 35678888877666555443321110 00011 24567
Q ss_pred EEEcCCCCCCC---CCCCccEEEECCCCc--hhH---HHHHhccccCcEEEEE
Q 022372 212 VHVGDGRKGWP---EFAPYDAIHVGAAAP--EIP---QALIDQLKPGGRMVIP 256 (298)
Q Consensus 212 ~~~gD~~~~~~---~~~~fD~Ii~~~~~~--~l~---~~l~~~LkpGG~Lvi~ 256 (298)
.++++....-. -....++|+++...- ++. .+++..+++|-+++=+
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 77777654211 013468898887752 222 4888899999998863
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.70 E-value=3.1 Score=38.56 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-~~~~~~ 226 (298)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ + +. .. ++....... ....+.
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~--vi~~~~~~~~~~~~~~ 232 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK-L---GA------DE--FIATKDPEAMKKAAGS 232 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CC------cE--EecCcchhhhhhccCC
Confidence 67888998888765 777777787764 589999998887777643 2 11 11 111000000 001256
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|.++.............+.|+++|+++.
T Consensus 233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~ 261 (337)
T cd05283 233 LDLIIDTVSASHDLDPYLSLLKPGGTLVL 261 (337)
T ss_pred ceEEEECCCCcchHHHHHHHhcCCCEEEE
Confidence 89999766655456778899999999886
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.1 Score=41.17 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--CCcc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~~fD 228 (298)
.|..|+-+| -.-..+..++-. +-..++..+|+++.++....+-.++.+ .+|++...-|.++.+|+. ..||
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g------~~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG------YNNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC------ccchhheeehhcccChHHHHhhCC
Confidence 467899999 333333444333 223689999999999999988888754 478999999999988753 5899
Q ss_pred EEEECCCC
Q 022372 229 AIHVGAAA 236 (298)
Q Consensus 229 ~Ii~~~~~ 236 (298)
+++.+++-
T Consensus 224 vfiTDPpe 231 (354)
T COG1568 224 VFITDPPE 231 (354)
T ss_pred eeecCchh
Confidence 99988864
|
|
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.31 E-value=4.2 Score=37.53 Aligned_cols=95 Identities=27% Similarity=0.308 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-------- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-------- 218 (298)
.++++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++. +. -.++..+..
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~--------~~~i~~~~~~~~~~~~~ 224 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAM----GA--------DIVVDPAADSPFAAWAA 224 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CC--------cEEEcCCCcCHHHHHHH
Confidence 477889999998764 6677777887653 3588889888887776542 11 011111100
Q ss_pred -CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 219 -KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 -~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+.+|+++-...-........+.|+++|+++.
T Consensus 225 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 262 (341)
T cd08262 225 ELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVV 262 (341)
T ss_pred HHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 0011224699998655443466778889999999886
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=89.10 E-value=4.8 Score=37.13 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+.++.+||-.|+|. |..+..+++..|. .++++++.+++..+.+++ .+. . .+..+..+ .
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~------~---~~~~~~~~~~~~l~~ 229 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA----LGA------E---PINFEDAEPVERVRE 229 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----hCC------e---EEecCCcCHHHHHHH
Confidence 367889999998765 6677777887642 378888888777666543 111 1 11111110 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++.............+.|+++|+++.
T Consensus 230 ~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~ 264 (344)
T cd08284 230 ATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISS 264 (344)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEE
Confidence 11224689998876655677888999999999875
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.64 Score=36.57 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=30.1
Q ss_pred HHHHHHHHHcc--CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCC
Q 022372 138 HATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHI 185 (298)
Q Consensus 138 ~~~~l~~L~~~--l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s 185 (298)
.++++++-... ..+.....|+|||+|.+.-.|.+.. -.-+|+|.-
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R 89 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG---YPGWGIDAR 89 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCC---CCccccccc
Confidence 34455544321 1234578999999999998888763 456888853
|
; GO: 0008168 methyltransferase activity |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.2 Score=42.28 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-- 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-- 223 (298)
..++|.+||-+|.++ |..+..+|+..+ ...+..-.+++.++.+++. +....+++.+ .+..+....
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~l----GAd~vvdy~~-----~~~~e~~kk~~ 222 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKL----GADEVVDYKD-----ENVVELIKKYT 222 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHc----CCcEeecCCC-----HHHHHHHHhhc
Confidence 367889999999887 567788898874 3566666777777777543 2211122222 222221111
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...||+|+-...-.........+++.||..++.+.
T Consensus 223 ~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~ 257 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLV 257 (347)
T ss_pred CCCccEEEECCCCCccccchhhhccCCceEEEEec
Confidence 36799998887776666667777777777766554
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=4.2 Score=37.42 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~---~~ 221 (298)
.++++.+||-.|+|. |..+..+++.. | .++++++.+++..+.+++ + +. .. ++.... .. ..
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~--v~~~~~~~~~~~~v 224 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFN--AKVIAVDINDDKLALAKE-V---GA------DL--TINSKRVEDVAKII 224 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHH-c---CC------cE--EecccccccHHHHH
Confidence 478899999999765 77778888863 4 589999999998888843 2 11 11 111100 00 00
Q ss_pred -CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 -PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+.+|.++....-....+...+.|+++|+++.
T Consensus 225 ~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 225 QEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred HHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEE
Confidence 0012478555555556677888999999999886
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=88.67 E-value=6.6 Score=33.16 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=65.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+.....++.+|+=|||=+-+....- ...+..+++..|++....... ++ .++.-|.
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~ 73 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC---------------Cc-ceEECCC
Confidence 34444444433456689999999886654443 223556899999986543321 22 4555555
Q ss_pred CCCC--C--CCCCccEEEECCCCc------hhHHHHHhccccCcEEEEEECCC
Q 022372 218 RKGW--P--EFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~--~--~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.... + -.++||+|+++++.- +..+.+..++|+++.+++..+..
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 4321 1 136899999999972 22345556678999999877653
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.58 E-value=3 Score=39.61 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=61.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc---CCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG---DGR---K 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v-~~~~g---D~~---~ 219 (298)
.+++|.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++. +. +.+ ..... +.. .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~~----g~------~~~v~~~~~~~~~~~~~v~ 268 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKEM----GA------DYVFNPTKMRDCLSGEKVM 268 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----CC------CEEEcccccccccHHHHHH
Confidence 477899999998876 7777778887652 3799999888866665442 21 111 00000 000 0
Q ss_pred CCCCCCCccEEEECCCC-chhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~-~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+..... ........+.|+++|+++.
T Consensus 269 ~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 269 EVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred HhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEE
Confidence 11222469999876553 2466788899999999986
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=88.58 E-value=5.1 Score=36.99 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++ .+.. .++...... .
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~ga~--------~v~~~~~~~~~~~i~~ 231 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALARE----FGAT--------DIVAERGEEAVARVRE 231 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCc--------eEecCCcccHHHHHHH
Confidence 467888998888876 7777888888653 358999988766655543 1111 111111000 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++....-........+.|+++|+++.
T Consensus 232 ~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 232 LTGGVGADAVLECVGTQESMEQAIAIARPGGRVGY 266 (345)
T ss_pred hcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEE
Confidence 11224589998765555677888999999999986
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.14 E-value=5.1 Score=37.22 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+.++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++. +. . .++...... .
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~--~v~~~~~~~~~~~~~~ 237 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARKF----GA------D--VVLNPPEVDVVEKIKE 237 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHHc----CC------c--EEecCCCcCHHHHHHH
Confidence 467888998877765 7777888888753 3688899888776655431 11 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++....-........+.|+++|+++.
T Consensus 238 ~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 238 LTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred HhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 11223589998765544566778999999999887
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=88.02 E-value=4.1 Score=36.73 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
.+.+|.+||-.|+ +.|..+..+++..| .+|+++..+++..+.+++ .+. ..+-....+... ..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~i~~~- 205 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGA------DEVVIDDGAIAEQLRAA- 205 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------cEEEecCccHHHHHHHh-
Confidence 3678899999996 34788888888865 579999888877666632 111 111100001000 11
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++....- .......+.|+++|+++.
T Consensus 206 -~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 206 -PGGFDKVLELVGT-ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred -CCCceEEEECCCh-HHHHHHHHHhccCCEEEE
Confidence 2569999876553 567788899999999875
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.96 E-value=6.5 Score=35.45 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++.+||-.|+|. |..+..+|+..| .+ ++.+..+++..+.+++ .+. . .++......
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~l~ 191 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGA------T--EVVTDDSEAIVERVR 191 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCC------c--eEecCCCcCHHHHHH
Confidence 467889999988654 666677777765 35 8888888776664432 111 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+++.............+.|+++|+++.
T Consensus 192 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~ 227 (312)
T cd08269 192 ELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVI 227 (312)
T ss_pred HHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 011224699999876555567788999999999986
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.84 E-value=5.5 Score=36.82 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC------CCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------KGW 221 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~------~~~ 221 (298)
..+|.+||-.|+|. |..+..+++..|. .++++++.+++..+.+++. +. . .++..... ...
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~l----g~------~--~~~~~~~~~~~~~~~~~ 227 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARKM----GA------T--RAVNVAKEDLRDVMAEL 227 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh----CC------c--EEecCccccHHHHHHHh
Confidence 45788998888776 7777888887653 2678888888776665432 11 1 11111100 011
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.....+|+|+.............+.|+++|+++..
T Consensus 228 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 228 GMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 22346899988655556677889999999999884
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.54 Score=43.17 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCCC--CCCCCccEEEECCCCc----------------------hhHHHHHhccccCcEEEEEEC
Q 022372 208 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP----------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 208 ~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~~----------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.+++++|..+.. .+.++||+|+++++.. ....++.++|||||.+++...
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45678888887632 2347899999988741 244778899999999998543
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.73 E-value=0.27 Score=49.49 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=35.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCH
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP 186 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~ 186 (298)
++.++..|||+||..|......++.++.++-|+|+|+.|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 578889999999999999999999998888999999876
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.7 Score=35.41 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=26.9
Q ss_pred EEcCCCc--HHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHH
Q 022372 157 DIGSGTG--YLTACFA-LMVGPQGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 157 DiG~GsG--~~t~~La-~~~g~~~~V~giD~s~~~l~~A~~~ 195 (298)
|||+..| ..+..+. +..++..+|+++|.++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 3456778999999999999999888
|
; PDB: 2PY6_A. |
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.32 E-value=7.5 Score=35.82 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=63.4
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++.+||-.|+++ |..+..+++..| .+|+.+..+++..+.+++ + +. .. ++......
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~--v~~~~~~~~~~~~~ 227 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-L---GA------DA--FVDFKKSDDVEAVK 227 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-c---CC------cE--EEcCCCccHHHHHH
Confidence 377889999999864 778888888875 489999988877666532 2 11 11 11111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.......+|+++.............+.|+++|+++..
T Consensus 228 ~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 228 ELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEe
Confidence 0112246999997565556777889999999999974
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.26 E-value=9.1 Score=35.36 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=61.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~------ 219 (298)
.+.++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ + +. . .++.... ..
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~------~--~~i~~~~~~~~~~~~~ 227 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE-L---GA------V--ATVNASEVEDVAAAVR 227 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-h---CC------C--EEEccccchhHHHHHH
Confidence 367788999999765 777777888764 589999988887777743 2 21 1 1111111 00
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... +.+|.++.............+.|+++|+++.
T Consensus 228 ~~~~-~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 228 DLTG-GGAHVSVDALGIPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred HHhC-CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 0112 2699998765544566778999999999886
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=8.7 Score=33.26 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
++.+||-.|++ |.++..+++.+ ..+.+|++++.+++..+...+..... .++.++..|..+..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCeEEEECCCCCHHHHHHHHHH
Confidence 35789999986 44444444433 22358999999987766554443321 36778888877521
Q ss_pred --CCCCCccEEEECCCCc-----------------------hhHHHHHhccccCcEEEEEE
Q 022372 222 --PEFAPYDAIHVGAAAP-----------------------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~Lvi~v 257 (298)
...+..|.++.+.... .+.+.+.+.++.+|.+++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0013568887776421 11244556677788877743
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.92 E-value=3.6 Score=35.90 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=69.5
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~---~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+..|.....+-+.+- .++| ..|+|.|+-.|..+..+|.. .|...+|+++|++-..++.+... .+
T Consensus 52 ~k~p~D~~~yQellw-~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p 118 (237)
T COG3510 52 IKSPSDMWNYQELLW-ELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VP 118 (237)
T ss_pred cCCHHHHHHHHHHHH-hcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CC
Confidence 344555555555553 3444 68999999998877766654 35557999999987665554322 27
Q ss_pred CEEEEEcCCCCCCC------CCCCccEEEECCCCc----hhH---HHHHhccccCcEEEE
Q 022372 209 SLSVHVGDGRKGWP------EFAPYDAIHVGAAAP----EIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 209 ~v~~~~gD~~~~~~------~~~~fD~Ii~~~~~~----~l~---~~l~~~LkpGG~Lvi 255 (298)
.+.++.++..+..- ..+.|-.|++..... ++. +.+..+|..|-.+++
T Consensus 119 ~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 119 DILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred CeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEE
Confidence 89999999876321 112344565544432 333 445567888888887
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.62 Score=45.53 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=62.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
+.++|+|+|.|.-.-.+...++. ...++.||.+..|...+.++++...........++.+ -+..-.......||+|+
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~--~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVF--HRQRLPIDIKNGYDLVI 279 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccch--hcccCCCCcccceeeEE
Confidence 57889999887655555554433 3478999999999999988775411100001112111 12222233335699999
Q ss_pred ECCCCchhH----------HHHHhccccCcEEEEEE
Q 022372 232 VGAAAPEIP----------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 232 ~~~~~~~l~----------~~l~~~LkpGG~Lvi~v 257 (298)
+...+.++. .......++||.+|+.-
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 988764432 33456788999999843
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.70 E-value=0.13 Score=43.11 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEECCCCchhH--------HHHHhccccCcEEEEEECCCc
Q 022372 210 LSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 210 v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
++++.....+..+..++.|+|++.-+++|+- +.+++.|||||.|-+.+++..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 3444333333444558899998887776653 678999999999999998753
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.8 Score=39.38 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcC----CCcEEEEEeCCHHHH
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELV 189 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g----~~~~V~giD~s~~~l 189 (298)
+.+...++|+|||.|.++.++++.+. +...++.||......
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 56778999999999999999999873 336899999866443
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.7 Score=43.00 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
-.|.+|+-+|+|. |...+..++.+| .+|+.+|.++.....+.. .+ +++. +..+. ....|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~----~G---------~~~~--~leel---l~~AD 311 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAM----EG---------YQVV--TLEDV---VETAD 311 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHh----cC---------ceec--cHHHH---HhcCC
Confidence 3688999999998 666666666554 589999988765433322 11 1111 11111 13579
Q ss_pred EEEECCCCchhH-HHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEIP-QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++.....++. .+.++.+|||++++- ++.
T Consensus 312 IVI~atGt~~iI~~e~~~~MKpGAiLIN-vGr 342 (476)
T PTZ00075 312 IFVTATGNKDIITLEHMRRMKNNAIVGN-IGH 342 (476)
T ss_pred EEEECCCcccccCHHHHhccCCCcEEEE-cCC
Confidence 998877666665 688999999999876 443
|
|
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.96 E-value=5.3 Score=36.49 Aligned_cols=101 Identities=23% Similarity=0.228 Sum_probs=65.7
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
++++|+.||--.+ |.|.+...+++..+ .++++.-.+.+..+.|+++=.+ ..|.....|..+ .+.
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~---------h~I~y~~eD~v~~V~kiT 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE---------HPIDYSTEDYVDEVKKIT 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc---------ceeeccchhHHHHHHhcc
Confidence 5899999876544 34778888888765 5888888888888888775322 234444444332 122
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECCCc
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
.....|+++-.-... -+..-+..||++|.++- +++..
T Consensus 212 ngKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVS-fG~as 248 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKD-TFAKSLAALKPMGKMVS-FGNAS 248 (336)
T ss_pred CCCCceeeeccccch-hhHHHHHHhccCceEEE-ecccc
Confidence 224577776555443 34556778999999875 77654
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.9 Score=41.18 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-C-CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-P-EFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~-~~~~ 226 (298)
..+|.+|+|..|-.|.-|.+++....+.+++++.|.+.+..+.-++.+...+. .+++...+|+.... + .-..
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t~~~~~~~~ 284 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNTATPEKFRD 284 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCCCCcccccc
Confidence 67789999999999999999999887789999999999999998888887665 46666688877631 1 1123
Q ss_pred ccEEEECCCC
Q 022372 227 YDAIHVGAAA 236 (298)
Q Consensus 227 fD~Ii~~~~~ 236 (298)
.-.|+++.++
T Consensus 285 v~~iL~Dpsc 294 (413)
T KOG2360|consen 285 VTYILVDPSC 294 (413)
T ss_pred eeEEEeCCCC
Confidence 4556666553
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.83 E-value=7.9 Score=35.68 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CC
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----~~ 221 (298)
.+.++.+||-.|+ |. |..+..+++..+ .++++++.++ ..+.+++ .+. . .+...+... ..
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 238 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LGA------D--TVILRDAPLLADAKA 238 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cCC------e--EEEeCCCccHHHHHh
Confidence 4778999999998 43 778888888765 5688887543 4444422 111 1 111111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+++....- ...+...+.|+++|+++.
T Consensus 239 ~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 239 LGGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred hCCCCCcEEEecCCH-HHHHHHHHHhccCCEEEE
Confidence 122469999866553 466788999999999885
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=85.81 E-value=8.9 Score=34.19 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=60.8
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.++.+||-.|+ | .|..+..+++..| .++++++.+++..+.+++ .+. . .++..+...
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 198 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGA------D--HVINYRDEDFVERVR 198 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCC------C--EEEeCCchhHHHHHH
Confidence 4678899999994 3 4778888888765 578999888887766643 111 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|.++....- .......+.|+++|+++.
T Consensus 199 ~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 199 EITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred HHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEE
Confidence 11122469999876554 466778899999999886
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.44 Score=37.57 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=24.0
Q ss_pred CccEEEECCCCc------------hhHHHHHhccccCcEEEEE
Q 022372 226 PYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 226 ~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~ 256 (298)
.||+|+|-.+.- .+++.+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988753 3457888999999999994
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.66 E-value=12 Score=35.48 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=58.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC--CCC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD--~~~---~~ 221 (298)
.++++++||-.|+|. |..+..+++..|. .+|+.++.+++..+.+++ + +.. .-+.....+ ... ..
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~a~~-l---Ga~-----~~i~~~~~~~~~~~~v~~~ 256 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDINKDKFAKAKE-L---GAT-----ECINPQDYKKPIQEVLTEM 256 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-c---CCc-----eEecccccchhHHHHHHHH
Confidence 478899999998865 6677777777642 279999999888777743 2 110 001111000 000 01
Q ss_pred CCCCCccEEEECCCCchhHHH-HHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQA-LIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~-l~~~LkpGG~Lvi 255 (298)
.. +.+|+|+-.......... +...++++|+++.
T Consensus 257 ~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~ 290 (373)
T cd08299 257 TD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVI 290 (373)
T ss_pred hC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEE
Confidence 12 358999887665455555 4445568898886
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=85.62 E-value=9.8 Score=36.08 Aligned_cols=101 Identities=19% Similarity=0.126 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE-EEEc-C-------
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVG-D------- 216 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~-~~~g-D------- 216 (298)
.+.++.+||-.|+ |. |..+..+++..| .+++.++.+++..+.+++ +.. ...+...... +... +
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~-~G~---~~~i~~~~~~~~~~~~~~~~~~~~ 263 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA-LGA---EGVINRRDFDHWGVLPDVNSEAYT 263 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-cCC---CEEEcccccccccccccccchhhh
Confidence 3678899999997 44 777788888765 577888988888888765 211 0000000000 0000 0
Q ss_pred --------C---CCCCCCCC-CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 217 --------G---RKGWPEFA-PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 217 --------~---~~~~~~~~-~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
. ........ .+|+++..... .......+.|+++|+++.
T Consensus 264 ~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~ 313 (393)
T cd08246 264 AWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVI 313 (393)
T ss_pred hhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEE
Confidence 0 00011112 58999876543 456778899999999987
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=3.3 Score=38.02 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
.+.++.+||-.|++ .|..+..+++..| .+++.++.+++..+.+++. ... . +. .+ .+ ..+... . +
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~-~---~~-~~-~~-~~~v~~-~---~ 224 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADY-V---IV-GS-KF-SEEVKK-I---G 224 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHH-h---cC-ch-hH-HHHHHh-c---C
Confidence 37788999999994 3888888888865 5789999988888877543 211 1 11 01 00 001111 1 2
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++....- .......+.|+++|+++.
T Consensus 225 ~~d~~ld~~g~-~~~~~~~~~l~~~G~~v~ 253 (334)
T PRK13771 225 GADIVIETVGT-PTLEESLRSLNMGGKIIQ 253 (334)
T ss_pred CCcEEEEcCCh-HHHHHHHHHHhcCCEEEE
Confidence 48988865544 346788899999999876
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=85.55 E-value=7.8 Score=35.58 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=55.7
Q ss_pred CCCEEEEE--cCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 151 PGMHALDI--GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 151 ~g~~VLDi--G~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
++.++|-+ |+|. |..+..+|+..| .++++++.+++..+.+++ .+. . .++..+..+ ..
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~------~--~~i~~~~~~~~~~v~~~ 207 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGA------E--YVLNSSDPDFLEDLKEL 207 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------c--EEEECCCccHHHHHHHH
Confidence 44455554 5554 777788888765 579999999988777754 121 1 122111111 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.....+|+++....-. ......+.|+++|+++..
T Consensus 208 ~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 208 IAKLNATIFFDAVGGG-LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred hCCCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEE
Confidence 1223689998765543 345668889999999873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.39 E-value=3.1 Score=38.03 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=56.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+.+|+...|+|+-.|..|-.|.++- -.|+++|.-+-.-.. +..+.|+-...|+...-|...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma~sL-------------~dtg~v~h~r~DGfk~~P~r~~i 271 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMAQSL-------------MDTGQVTHLREDGFKFRPTRSNI 271 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccchhhhhh-------------hcccceeeeeccCcccccCCCCC
Confidence 46789999999999999999888763 699999975532111 23378888999998877755789
Q ss_pred cEEEECCC
Q 022372 228 DAIHVGAA 235 (298)
Q Consensus 228 D~Ii~~~~ 235 (298)
|..+|+.+
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 99999986
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=84.98 E-value=5.2 Score=34.99 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCC-cHH-HHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 151 PGMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~-t~~La~~~g~~~~V~giD~--s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.|.+||-+|.|. |.- ...|.+. | .+|+.++. +++..+.++ . .++.++.++..... ...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~-g--a~VtVvsp~~~~~l~~l~~----~---------~~i~~~~~~~~~~d--l~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA-G--AQLRVIAEELESELTLLAE----Q---------GGITWLARCFDADI--LEG 69 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC-C--CEEEEEcCCCCHHHHHHHH----c---------CCEEEEeCCCCHHH--hCC
Confidence 367999999886 433 2333333 3 56666654 333333321 1 47888887765432 246
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+|+....-+++-..+....+.-|.++-.+.+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 899998888777777788777788888754444
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.78 E-value=2.9 Score=40.26 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
++.|. +.++++||-|.+|......++.+ +| .+|++||.++......+-++..
T Consensus 28 ~~aL~--i~~~d~vl~ItSaG~N~L~yL~~--~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSAGCNALDYLLA--GP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHhC--CCCCCeEEEEccCCchHHHHHhc--CC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 45565 89999999997776665555554 45 6999999999887776655543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=5.8 Score=35.29 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCCcHHH--HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSGTGYLT--ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t--~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.+.+||-||.|.-... ..|.+. +..-+|++-++++++.+.++. ++++++..+...... ..++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~-------------~~i~~~~r~~~~~dl--~g~~ 87 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKY-------------GNLKLIKGNYDKEFI--KDKH 87 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhC-------------CCEEEEeCCCChHHh--CCCc
Confidence 5679999999874322 233333 544566777888887665431 578888776554332 3578
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++...-+.+-+.+.+.-+.-|.++..+.+
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 8888877777888888877777777765544
|
|
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=84.01 E-value=14 Score=32.83 Aligned_cols=91 Identities=22% Similarity=0.169 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCC
Q 022372 149 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~~ 224 (298)
+.++.+||-.|+ | .|..+..+++..+ .+++.++.++ ..+.+++ .+.. .++....... ....
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~----~g~~--------~~~~~~~~~~~~~~~~ 206 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRS----LGAD--------EVIDYTKGDFERAAAP 206 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHH----cCCC--------EEEeCCCCchhhccCC
Confidence 678899999996 3 3677777777754 5788877665 4444422 2211 1111111000 1222
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+++....-. ......+.|+++|+++.
T Consensus 207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~ 236 (309)
T cd05289 207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVS 236 (309)
T ss_pred CCceEEEECCchH-HHHHHHHHHhcCcEEEE
Confidence 4689988755443 56778889999999886
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=83.61 E-value=3.4 Score=37.57 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCC--cH--HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT--GY--LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~Gs--G~--~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
++.+++||-+|+|+ |. -+..|.+.++.++.++-.|+.+- .. +--..+.+|.....++
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------vS----------Da~~~~~~Dc~t~~~~- 119 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------VS----------DADQSIVGDCRTYMPP- 119 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B-----------SSSEEEES-GGGEEES-
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------cc----------ccCCceeccccccCCC-
Confidence 45689999999998 43 56777788755667777887531 11 2223567787665554
Q ss_pred CCccEEEECCC-------------CchhH----HHHHhccccCcEEEEEECCCc
Q 022372 225 APYDAIHVGAA-------------APEIP----QALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 225 ~~fD~Ii~~~~-------------~~~l~----~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
.+||+|+++.= -+.++ .-+.+.|+-||.+.+-+.+..
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S 173 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS 173 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc
Confidence 78999998864 12222 445678999999999887643
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=83.51 E-value=2.5 Score=39.39 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=62.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHc-------------------CCCcEEEEEeCCH--HHHHHHHHHHHHhc----------c
Q 022372 153 MHALDIGSGTGYLTACFALMV-------------------GPQGRAVGVEHIP--ELVVSSIQNIEKSA----------A 201 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~-------------------g~~~~V~giD~s~--~~l~~A~~~~~~~~----------~ 201 (298)
.+||-||.|.|.-...+|..+ .+...++.||+.+ ..++.....+.... +
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987666666555 0113899999887 44555555443330 0
Q ss_pred -CCccCCCCEEEEEcCCCCCCCCC-------CCccEEEECCCCch-----------hHHHHHhccccCcEEEE
Q 022372 202 -APLLKEGSLSVHVGDGRKGWPEF-------APYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 202 -~~~l~~~~v~~~~gD~~~~~~~~-------~~fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi 255 (298)
...-+.-++.|.+.|+.....+. ...|+|..-..+.+ +...+-+.++||-.|++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 00011236788899987643321 13455544333333 23566778899998887
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=83.37 E-value=5.9 Score=36.52 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.|.+|+-+|.|. |...+..++..| .+|+..+.+++..+.+. ..+. ..+. ..+..+ ....+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~----~~g~------~~~~--~~~l~~---~l~~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARIT----EMGL------IPFP--LNKLEE---KVAEIDI 212 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HCCC------eeec--HHHHHH---HhccCCE
Confidence 468999999986 544444444434 58999999887544432 1111 1111 111111 1136899
Q ss_pred EEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+...+..-+.++..+.++++ .+++-+.
T Consensus 213 Vint~P~~ii~~~~l~~~k~~-aliIDla 240 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKH-AVIIDLA 240 (287)
T ss_pred EEECCChHHhCHHHHhcCCCC-eEEEEeC
Confidence 999876654456777888886 4555444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=14 Score=33.31 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------CC
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---------PE 223 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---------~~ 223 (298)
+.+|--|+ |.++..+++.+..+.+|+.++.+++.++...+.+...+ .++.++..|..+.. ..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~i~~~~~~~~~ 73 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-------FDVSTQEVDVSSRESVKALAATAQT 73 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEEeecCCHHHHHHHHHHHHh
Confidence 35666665 46777777776555789999998876665555444321 35777788876521 11
Q ss_pred CCCccEEEECCCC
Q 022372 224 FAPYDAIHVGAAA 236 (298)
Q Consensus 224 ~~~fD~Ii~~~~~ 236 (298)
.++.|.++.++..
T Consensus 74 ~g~id~li~nAG~ 86 (275)
T PRK06940 74 LGPVTGLVHTAGV 86 (275)
T ss_pred cCCCCEEEECCCc
Confidence 2568999888764
|
|
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=82.86 E-value=14 Score=34.90 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---CCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~---~~~~~ 223 (298)
.+.+|.+||-.|+|. |..+..+++..|. .+++++|.+++..+.+++. +. ..+.....+.. .....
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~~----g~------~~v~~~~~~~~~~i~~~~~ 241 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAESI----GA------IPIDFSDGDPVEQILGLEP 241 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CC------eEeccCcccHHHHHHHhhC
Confidence 467889999988875 7788888887642 2788899988877766531 10 00100000000 00112
Q ss_pred CCCccEEEECCCCch-----------hHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi 255 (298)
..+|+++....... ......+.|+++|+++.
T Consensus 242 -~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 242 -GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 35899987654331 35778899999999864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.62 E-value=7.9 Score=40.04 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
+|++||-.|+++| ++..+++.+ ..+.+|+.+|.+++..+.+.+.+... .++.++..|..+..
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------CcEEEEEecCCCHHHHHHHHHH
Confidence 4678998886443 333333332 12258999999988776665544321 36778888876421
Q ss_pred --CCCCCccEEEECCC
Q 022372 222 --PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~ 235 (298)
...+.+|+|+.++.
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 01246899988876
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=82.57 E-value=7.7 Score=33.67 Aligned_cols=97 Identities=18% Similarity=0.071 Sum_probs=50.1
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCC-------------------HHHHHHHHHHHHHhccCCccCCCCE
Q 022372 152 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHI-------------------PELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 152 g~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s-------------------~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
+.+||-+|||. |. .+..|++. |- ++++.+|.+ ...++.+.+++++... .-++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~v~i 93 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS-----DIQV 93 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC-----CCEE
Confidence 46899999996 54 34444444 43 589999877 2345555566654321 1223
Q ss_pred EEEEcCCCCC--CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 211 SVHVGDGRKG--WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 211 ~~~~gD~~~~--~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.+....... ......||+|+....-......+.+..+..+.-++
T Consensus 94 ~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 94 TALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred EEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 3332222111 00124699998876554433333333333343333
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.27 E-value=29 Score=31.65 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~ 222 (298)
...+...+|+|+|+-.-+..|...+.+ -.+.+.+|++...++...+.+...... -.+.-+.+|.... ++
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-----l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-----LEVNALCGDYELALAELP 150 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-----CeEeehhhhHHHHHhccc
Confidence 445789999999999888887766533 258999999999987766655443211 2455556665432 22
Q ss_pred CCCCccEEEECCCC--------chhHHHHHhccccCcEEEEEEC
Q 022372 223 EFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
..+.==.++.+..+ ..+...+...|+||-.+.+-+.
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 21221223444433 2344778889999999998553
|
|
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.17 E-value=19 Score=32.61 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=59.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-C------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-R------K 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~------~ 219 (298)
.++++.+|+-.|+|. |..+..+++..| .+++.++.+++..+.+++. +. .. ++.... . .
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g~------~~--~~~~~~~~~~~~~~~ 222 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAAG--ARVIATSSSDEKLERAKAL----GA------DH--VINYRTTPDWGEEVL 222 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----CC------CE--EEcCCcccCHHHHHH
Confidence 467888888877654 666677777655 5799999888877776542 21 11 111111 0 0
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|.++.... ........+.|+++|+++.
T Consensus 223 ~~~~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 223 KLTGGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISL 257 (336)
T ss_pred HHcCCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEE
Confidence 1122246899987654 4556778899999999886
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=82.15 E-value=4.9 Score=33.78 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+.+.|......|.+|.-.|+|+...+..-.--..++--.+.+|.++.. .|.. +....+.++.-+...
T Consensus 57 l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K----------~G~~--~PGt~ipI~~p~~l~- 123 (160)
T PF08484_consen 57 LREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLK----------QGKY--LPGTHIPIVSPEELK- 123 (160)
T ss_dssp HHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGG----------TTEE---TTT--EEEEGGG---
T ss_pred HHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhh----------cCcc--cCCCCCeECCHHHHh-
Confidence 344443223567899999999966553322222233345678877642 2211 222345444443221
Q ss_pred CCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
....|.|++.+.. +++.+.+.+.++.||++++|++
T Consensus 124 ---~~~pd~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 124 ---ERKPDYVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp ---SS--SEEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred ---hCCCCEEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 1356888875543 4566677777889999999875
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=82.14 E-value=22 Score=32.15 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.+|.+||-.|+ | .|..+..+|+..| .+++.+.-+++..+.+++ . +. . .++......
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~--~~~~~~~~~~~~~i~ 201 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA-L---GI------G--PVVSTEQPGWQDKVR 201 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh-c---CC------C--EEEcCCCchHHHHHH
Confidence 4788999999886 3 3788888888876 467777666665555543 1 21 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+....- .......+.|+++|+++.
T Consensus 202 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~ 236 (324)
T cd08292 202 EAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLVS 236 (324)
T ss_pred HHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEE
Confidence 01122469999876554 355778899999999886
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=82.11 E-value=23 Score=32.13 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=60.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC------C
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------K 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~------~ 219 (298)
.+.++.+||-.|. | .|..+..+++..| .++++++.+++..+.+++.+.. . .++..... .
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~---------~--~~~~~~~~~~~~~v~ 208 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGF---------D--AAINYKTPDLAEALK 208 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCC---------c--eEEecCChhHHHHHH
Confidence 3677899999984 3 3778888888765 5899999888877776543211 1 11111100 0
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... +.+|+++.... ....+...+.|+++|+++.
T Consensus 209 ~~~~-~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 209 EAAP-DGIDVYFDNVG-GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred Hhcc-CCceEEEEcch-HHHHHHHHHhcCCCceEEE
Confidence 0112 46898886544 3566788899999999875
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=82.03 E-value=22 Score=32.07 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=61.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++.+||-.|+ | .|..+..+++..| .++++++.+++..+.+++ .+. . .++......
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 204 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGA------D--VAVDYTRPDWPDQVR 204 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC------C--EEEecCCccHHHHHH
Confidence 4678899999985 3 3778888888865 579999988887776643 111 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.......+|+++....-. ..+...+.|+++|+++..
T Consensus 205 ~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 205 EALGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTY 240 (324)
T ss_pred HHcCCCCceEEEECCChH-hHHHHHHHhccCcEEEEE
Confidence 011224699998765544 347788999999998863
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=28 Score=30.21 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCH-HHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIP-ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~-~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
+.++|-.|+.+ .++..+++.+ ..+.+|+++..+. ...+...+.++..+ .++.++.+|..+..
T Consensus 6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-------GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 56899888654 4455454433 2235788887654 23333333333211 35677788876521
Q ss_pred --CCCCCccEEEECCCCc-------------------hhHHHHHhccccCcEEEEE
Q 022372 222 --PEFAPYDAIHVGAAAP-------------------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~-------------------~l~~~l~~~LkpGG~Lvi~ 256 (298)
...+..|.++.++... .+.+.+.+.++.+|++++.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 0113578877666421 2335566666667777763
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.88 E-value=0.91 Score=40.30 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|-+...+++.|. ..+|...+|.--|.|..+..+.+.. ++.+++++|.+|.+...|+....+.-. +++..+.
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~------~~l~a~L 99 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMH------PTLKAVL 99 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcc------hhHHHHH
Confidence 456778888887 7789999999999999999888884 668999999999998888766643211 2222233
Q ss_pred cCCCC--------CCCCCCCccEEEECCCCc
Q 022372 215 GDGRK--------GWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 215 gD~~~--------~~~~~~~fD~Ii~~~~~~ 237 (298)
+.+.. +.. +..+|-|+.+....
T Consensus 100 g~Fs~~~~l~~~~gl~-~~~vDGiLmDlGcS 129 (303)
T KOG2782|consen 100 GNFSYIKSLIADTGLL-DVGVDGILMDLGCS 129 (303)
T ss_pred hhhHHHHHHHHHhCCC-cCCcceEEeecCcc
Confidence 33221 222 36788888777653
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=81.87 E-value=8.8 Score=34.92 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++.+||-.|+ |. |..+..+|+..| .+|+.++.+++..+.+++ + +....+..... ..+...... ...+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~---~~~~~~~~~-~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK-L---GAKEVIPREEL---QEESIKPLE-KQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH-c---CCCEEEcchhH---HHHHHHhhc-cCCcC
Confidence 4679999997 44 777788888765 479999988887776643 1 21100000000 000000111 24589
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+|+....- ...+...+.|+++|+++..
T Consensus 216 ~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 216 GAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred EEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 98865544 5667889999999999873
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=80.08 E-value=12 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCcHHH-HHHHHHcCCCcEEEEEeCC
Q 022372 150 KPGMHALDIGSGTGYLT-ACFALMVGPQGRAVGVEHI 185 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t-~~La~~~g~~~~V~giD~s 185 (298)
..+.+|+-||.|.+.++ ++.+...| .+|+.+|-.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence 35789999999985443 43333323 689999953
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 298 | ||||
| 1i1n_A | 226 | Human Protein L-Isoaspartate O-Methyltransferase Wi | 2e-56 | ||
| 1r18_A | 227 | Drosophila Protein Isoaspartyl Methyltransferase Wi | 1e-46 | ||
| 2yxe_A | 215 | Crystal Structure Of L-Isoaspartyl Protein Carboxyl | 3e-34 | ||
| 2pbf_A | 227 | Crystal Structure Of A Putative Protein-L-Isoaspart | 2e-31 | ||
| 1jg4_A | 235 | Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- | 4e-31 | ||
| 3lbf_A | 210 | Crystal Structure Of Protein L-Isoaspartyl Methyltr | 4e-22 | ||
| 1dl5_A | 317 | Protein-L-Isoaspartate O-Methyltransferase Length = | 1e-16 | ||
| 1vbf_A | 231 | Crystal Structure Of Protein L-Isoaspartate O-Methy | 4e-12 | ||
| 3cjt_A | 254 | Ribosomal Protein L11 Methyltransferase (prma) In C | 4e-05 | ||
| 1ufk_A | 254 | Crystal Structure Of Tt0836 Length = 254 | 5e-05 |
| >pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226 | Back alignment and structure |
|
| >pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215 | Back alignment and structure |
|
| >pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235 | Back alignment and structure |
|
| >pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210 | Back alignment and structure |
|
| >pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317 | Back alignment and structure |
|
| >pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-Methyltransferase Homologue From Sulfolobus Tokodaii Length = 231 | Back alignment and structure |
|
| >pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Dimethylated Ribosomal Protein L11 Length = 254 | Back alignment and structure |
|
| >pdb|1UFK|A Chain A, Crystal Structure Of Tt0836 Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-115
Identities = 115/229 (50%), Positives = 151/229 (65%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + + ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 1 AWKSGGAS-HSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQAT 57
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 58 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 117
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
S+ N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 118 SVNNVRK-DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 176
Query: 252 RMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 177 RLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 225
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = e-108
Identities = 100/224 (44%), Positives = 136/224 (60%), Gaps = 11/224 (4%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G N N+ ++ L+ +GVI S V++ M+ DR + P PY+D+P IG T
Sbjct: 8 AWRSVGAN-NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVT 64
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-----RAVGVEHIP 186
ISAPHMHA L+ L ++LKPG LD+GSG+GYLTACF + +G R VG+EH
Sbjct: 65 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA 124
Query: 187 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ 246
ELV S N+ +L G L + GDGRKG+P APY+AIHVGAAAP+ P LI+Q
Sbjct: 125 ELVRRSKANLNT-DDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQ 183
Query: 247 LKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPL 288
L GGR+++PVG Q ++ DK+ +G + + V YVPL
Sbjct: 184 LASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = e-101
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 14/225 (6%)
Query: 73 WSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATI 132
+ S N +K+++E+L+ G+I V M +DR ++ + PY+D+P+ I + TI
Sbjct: 5 YKLSE-NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTI 61
Query: 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFAL----MVGPQGRAVGVEHIPEL 188
SAPHMHA L+ L LKPG A+D+GSG+GYLT C A+ + +G+E + +L
Sbjct: 62 SAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDL 121
Query: 189 VVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRKGWPEFAPYDAIHVGAAAPEIPQALI 244
V S++NI++ LLK + + + + E +DAIHVGA+A E+P+ L+
Sbjct: 122 VNFSLENIKRDKPE-LLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILV 180
Query: 245 DQLKPGGRMVIPVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPL 288
D L G+++IP+ + Q L + K +G + V +V L
Sbjct: 181 DLLAENGKLIIPIEEDYTQVLYEITKK-NGKIIKDRLFDVCFVSL 224
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = e-100
Identities = 85/216 (39%), Positives = 121/216 (56%), Gaps = 11/216 (5%)
Query: 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHM 137
+ KA++E L G I SK+V + + + R F+P+ YVD+P+ IGY TISA HM
Sbjct: 6 QKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHM 65
Query: 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
+LL+ LKPGM L+IG+G GY A A +VG G V +E IPEL + + +
Sbjct: 66 VGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR 123
Query: 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257
K L ++ V VGDG G+ APYD I+ AA P+IP+ LI QLK GG++++PV
Sbjct: 124 K------LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV 177
Query: 258 GNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293
G Q L + +K D + V +VPL ++
Sbjct: 178 GRYLQRLVLAEKRGDEIIIKDCG-PVAFVPLVGKEG 212
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 2e-97
Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 19/223 (8%)
Query: 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP--YVDSPMAIGYNATISAPHM 137
K VE L+ G+I SK+V R V D ++D P+ I T+SAPHM
Sbjct: 20 KWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHM 79
Query: 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
A L++ LKPGM+ L++G+G+G+ A + +V +E IPELV + +N+E
Sbjct: 80 VAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLE 135
Query: 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257
+ ++ V +GDG KG+P APYD I V A AP+IP+ LI+QLK GG+++IPV
Sbjct: 136 R------AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV 189
Query: 258 G--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
G +++Q+L V K +DG + I + V +VPL GW
Sbjct: 190 GSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEY----GW 227
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 5e-85
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 19/224 (8%)
Query: 82 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP---YVDSPMAI----GYNATISA 134
+ + L+ YGV S +++ I R F+ P Y D + +T S
Sbjct: 3 EKLFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQ 60
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
P + A ++ + L GM L+IG GTGY A + +VG +G V VE+ ++ + +
Sbjct: 61 PSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 254
N+E+ L ++ GDG G PEF+PYD I V E+P+ QLK GGR++
Sbjct: 119 NVER------LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVI 172
Query: 255 IPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 296
+P+ + + K +D L + R++ L
Sbjct: 173 VPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNLL 216
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 5e-82
Identities = 75/216 (34%), Positives = 111/216 (51%), Gaps = 15/216 (6%)
Query: 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHM 137
+ +A+++ L+ G I ++V + + R FV + + + + IG TIS P+M
Sbjct: 7 RVQALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYM 65
Query: 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
A +LLE L P L+IG+G+GY TA A +V VE I L + + ++
Sbjct: 66 VARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLK 120
Query: 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257
L ++S GDG +GW AP+DAI V AA PEIP AL+ QL GG +V+PV
Sbjct: 121 N------LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPV 174
Query: 258 GNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293
G Q LK V + G I + +VR+VPL +
Sbjct: 175 GEEHQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGEL 209
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 1e-79
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 94 ITSKKVSEVMETIDRACFVPDG--TPPYVDSPMA--IGYNATISAPHMHATCLQLLEENL 149
I +++++E +DR+ F+P+ Y + A I +A ++ L L+ L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--L 68
Query: 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209
G L+IG+G GY TA A +V + V VE ++ + + + +
Sbjct: 69 HKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYY--------NN 117
Query: 210 LSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVD 268
+ + +GDG G+ E PYD + V A AP + +QLK GG M++P+G Q L V
Sbjct: 118 IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVI 177
Query: 269 KNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
K + S+ + V + + G+
Sbjct: 178 KKGNS-PSLENLGEVMFGRIGGLY----GF 202
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 4e-25
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 18/204 (8%)
Query: 90 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 143
H G + + + V + V P + + + +AT + P + +
Sbjct: 33 HKGSVPHEALLEAGPGGVVRTHLGEELSVHR--PTLEEYLLHMKRSATPTYPKDASAMVT 90
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
LL +L PGM L+ G+G+G LT A VG +G E P + + +N+
Sbjct: 91 LL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR-----A 143
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 262
+ ++ H+G + E A YD + + P ++ + LKP +V + NI Q
Sbjct: 144 FWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQ 203
Query: 263 DLKVVDKNQDGSLS-IWS-ETSVR 284
L++V + E R
Sbjct: 204 VLELVRAAEAHPFRLERVLEVGWR 227
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 4e-24
Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 16/210 (7%)
Query: 87 HLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLE 146
+ ++ + + + + P D + + I+ P L ++
Sbjct: 45 AVPFGKIVGKFPGQILRSSFGKQYMLRR--PALEDYVVLMKRGTAITFPKDINMILSMM- 101
Query: 147 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-------S 199
++ PG L+ GSG+G ++ + VG QGR + E + + +N + S
Sbjct: 102 -DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS 160
Query: 200 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVG 258
G + +DA+ + P LK GG + V
Sbjct: 161 HVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 220
Query: 259 NIFQDLKVVD---KNQDGSLSIWS-ETSVR 284
NI Q ++++D + E VR
Sbjct: 221 NITQVIELLDGIRTCELALSCEKISEVIVR 250
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 4e-24
Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 19/204 (9%)
Query: 90 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 143
H G+I +V + + + ++ P +D M + I P +
Sbjct: 49 HLGIIDLNEVFEKGPGEIIRTSAGKKGYIL--IPSLIDEIMNMKRRTQIVYPKDSSFIAM 106
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
+L ++K G +D G G+G + A A VG G+ E E + N+ K
Sbjct: 107 ML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 164
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 262
+++ V D +G+ E DA+ + P + LK GGR Q
Sbjct: 165 -----RVTIKVRDISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQ 218
Query: 263 DLKVVDK-NQDGSLSIWS-ETSVR 284
+ + K + + I E+ R
Sbjct: 219 VQETLKKLQELPFIRIEVWESLFR 242
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-19
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%)
Query: 90 HYGVIT-----SKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQL 144
G++ + E +++ F P VD + I P A +
Sbjct: 30 DLGILKLEEIIGRNFGEAIKSHKGHEFKIL-RPRIVDYLDKMKRGPQIVHPKDAALIVAY 88
Query: 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204
+ PG ++ G G+G LT A +VGP+GR V E + + +NI+ +
Sbjct: 89 A--GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDD- 145
Query: 205 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQD 263
+++ + D +G E D + + P + + LKPGG V Q
Sbjct: 146 ----RVTIKLKDIYEGIEE-ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQV 200
Query: 264 LKVVDKNQDGSLSI----WSETSVR 284
+++ +K ++ V
Sbjct: 201 MRLHEKLREFKDYFMKPRTINVLVF 225
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 6e-19
Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 16/172 (9%)
Query: 116 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP 175
+ I P L NL L+ G+G+G L A + + G
Sbjct: 60 LEEIILLGFERK--TQIIYPKDSFYIALKL--NLNKEKRVLEFGTGSGALLAVLSEVAGE 115
Query: 176 QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 235
VE + +++ ++ D + + A V
Sbjct: 116 VWTFEAVEEFYKTAQKNLKKFNLG--------KNVKFFNVDFKDAEVPEGIFHAAFVDVR 167
Query: 236 AP-EIPQALIDQLKPGGRMV--IPVGNIFQDLKVVDKNQDGSLSIWSETSVR 284
P + + L G + +P N L +N G+L + E R
Sbjct: 168 EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVV-EILHR 218
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-15
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Query: 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 176
P VD M++ + P A + ++ PG L+ G+G+G LT VGP
Sbjct: 67 PLLVDYVMSMPRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPA 124
Query: 177 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236
G+ + E + + +N+ + + V D D + A
Sbjct: 125 GQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADSELPDGSVDRAVLDMLA 181
Query: 237 P-EIPQALIDQLKPGGRMVIPVGNIFQDLKVVD--KNQDGSLSIWS-ETSVR 284
P E+ A+ L GG +++ V + Q ++V+ + + + ET R
Sbjct: 182 PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQR 233
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 7e-15
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
CL + A+D+G GTG +T A R ++ PE + ++ N+++
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG 79
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIP 256
++++ GD + + D VG + EI + + D+LKPGGR+++
Sbjct: 80 LGD-----NVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-14
Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 13/201 (6%)
Query: 87 HLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLE 146
+ H G+ + + + ++ V D +P Y + I + + +
Sbjct: 50 KMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRN--TQIISEIDASYIIMRC- 106
Query: 147 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 206
L+PGM L++G G+G +++ + +G VE + + ++ N+
Sbjct: 107 -GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS-----EFYD 160
Query: 207 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLK 265
G++ D + YDA+ P Q + +KPG + N Q K
Sbjct: 161 IGNVRTSRSDIADFISD-QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEK 219
Query: 266 VVDK-NQDGSLSIWS-ETSVR 284
V + G + + E R
Sbjct: 220 TVLSLSASGMHHLETVELMKR 240
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 9e-14
Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 22/188 (11%)
Query: 84 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--------TPPYVDSPMAIGYNATISAP 135
++ ++ +++ + I + DSP +
Sbjct: 47 TIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPR 106
Query: 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQ 194
++ + + G A+ IG G LT + + G R VE P++ S +
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRK 164
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE---IPQALIDQLKPGG 251
IE L ++V GD + +D + V A A + + + +
Sbjct: 165 VIEG------LGVDGVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTET 216
Query: 252 RMVIPVGN 259
R++
Sbjct: 217 RIIYRTYT 224
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 2e-13
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 18/162 (11%)
Query: 109 ACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTA 167
AC + P +A + + C L G LD+G GTG
Sbjct: 43 ACKLAAAVPESHRKILADIADEVL---EKFYGCGSTLPADGSLEGATVLDLGCGTGRDVY 99
Query: 168 CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--------HVGDGRK 219
+ +VG G+ +GV+ + + + + +E A +V ++
Sbjct: 100 LASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159
Query: 220 GWPEFAPYDAIHVGAA---APEIPQALIDQ---LKPGGRMVI 255
+ D + + + L+ GG +
Sbjct: 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF 201
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 2e-13
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
+ L + L+ + DIG+G+ ++ A + P GR +E P+ + N++K A
Sbjct: 31 VTLSKLRLQDDLVMWDIGAGSASVS-IEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA 89
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA---APEIPQALIDQLKPGGRMVIPV 257
+ ++ +G + D + +G + EI A+ +LK G +V+
Sbjct: 90 RNV------TLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-13
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 17/143 (11%)
Query: 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 183
M++ ++ H ++ +K G +D G G TA A +VG GR G +
Sbjct: 1 MSLTIKNSLGQSH------DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD 54
Query: 184 HIPELVVSSIQNIEKSAAAP----LLKEGSLSVHVGDGRKGWPEFAPY---DAIHVGAAA 236
+ + ++ + + + D F H +
Sbjct: 55 IQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTR 114
Query: 237 PEIPQALIDQ----LKPGGRMVI 255
PE + + L GG + +
Sbjct: 115 PETTIQALSKAMELLVTGGIITV 137
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 4e-13
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 10/119 (8%)
Query: 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
L + KP DIG G+G + L PQ AV E E + N
Sbjct: 15 ALAISALAPKPHETLWDIGGGSGSIA-IEWLRSTPQTTAVCFEISEERRERILSNAINLG 73
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPY-DAIHVGAAA--PEIPQALIDQLKPGGRMVIP 256
+ + + + D I +G P + A +L GGR+V
Sbjct: 74 VSDR------IAVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN 126
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 6e-13
Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 27/178 (15%)
Query: 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 187
+ +S P T L L P L+ G G G A F R + PE
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPE 81
Query: 188 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYDAIH----VGAAAPEIPQ 241
L+ K A A V+ +G+ P AP+ I + +P+
Sbjct: 82 LL--------KLARA---NAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLPE 130
Query: 242 ALIDQLKPGGRMVI--PVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 297
P + P N+ + + + ++ + + + P T D Q+RG
Sbjct: 131 L----AAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAP-TWEDWQMRG 183
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 8e-13
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
L L + G DIG G+G ++ + L GRA+ +E + + + +NI+
Sbjct: 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYG 101
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI-HVGAAAPEIPQALIDQLKPGGRMVIPV 257
+P + G + +A+ G + + L + L PG R+V
Sbjct: 102 LSP-----RMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANA 154
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-12
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189
A ++ H + L+ +L+PG + G P + VG+++ PE +
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL 156
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI---------HVGAAAPEIP 240
+ + A A G +++H D K YD + A E+
Sbjct: 157 DGATRLAAGHALA-----GQITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTELY 210
Query: 241 QALIDQLKPGGRMVI 255
+ LKPGG +V
Sbjct: 211 RRFWQALKPGGALVT 225
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 4e-12
Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
+K G L +G +G + + ++GP+GR GVE P ++ + +
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--------DRR 126
Query: 209 SLSVHVGDGRK--GWPEFAPY-DAIHVGAAAPEIPQALIDQ----LKPGGRMVIPVGNIF 261
++ +GD R + D ++ A PE ++ L+ GG M++ +
Sbjct: 127 NIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARS 186
Query: 262 QDLKVVDK 269
D+
Sbjct: 187 IDVTTEPS 194
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-12
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
LK GM LD+G+G G+ + MVG +G+ ++ E+V + + + K
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------ 87
Query: 208 GSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQALID---QLKPGGRMVI 255
++ V + K D I + E + L + KP + I
Sbjct: 88 KNVEVLKSEENK--IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAI 141
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 6e-11
Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 12/144 (8%)
Query: 124 MAIGYNATISAPHMHATC--LQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV 180
MA+G A T L + E +KPG L+IG G G L+A A VG G
Sbjct: 13 MALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVT 72
Query: 181 GVEHIPELVVSSI---QNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHVG--- 233
G++ + + Q A PL ++ + P +D + +
Sbjct: 73 GIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSL 132
Query: 234 --AAAPEIPQALIDQLKPGGRMVI 255
A+ L + V
Sbjct: 133 WYFASANALALLFKNMAAVCDHVD 156
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 5e-10
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
+ +H +D G G GYL ++ + G++ L+ + A L +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL---------AEARELFRLL 70
Query: 209 SLSV--HVGDGRKGWPEFA-PYDAIHVGAA---APEIPQAL---IDQLKPGGRMVI 255
GD + E YD A L I +K GG+++
Sbjct: 71 PYDSEFLEGDATE--IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 124
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 7e-10
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
LQ + + G LD+GS YL F L +G A+ E + S+++N+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL 70
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVI 255
+ V + +G + E D I + I ID+L+ +V+
Sbjct: 71 -----TSKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-09
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 11/134 (8%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
L LL +P + G G G + FA + R V ++ + V + + + +
Sbjct: 48 LYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG- 105
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVG 258
+ + VGD D + + + + L ++
Sbjct: 106 ----LIDRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNA--LLIAV 159
Query: 259 NIFQDLKVVDKNQD 272
N + V + ++D
Sbjct: 160 NALRRGSVAESHED 173
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 26/137 (18%)
Query: 130 ATISAPHMHATCLQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIP 186
P+M + LE L++ SGTGY T + V ++
Sbjct: 23 DATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLS----GLADRVTALDGSA 78
Query: 187 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-----PEIPQ 241
E++ A A ++ D W +DA+
Sbjct: 79 EMI----------AEAGRHGLDNVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEA 127
Query: 242 AL---IDQLKPGGRMVI 255
+ PGG +
Sbjct: 128 FWESVRSAVAPGGVVEF 144
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-09
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 31/130 (23%)
Query: 138 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
H T L+ L +L+PG LD+G+G+G L A A +G G+A+GV+ P ++ +
Sbjct: 104 HETTRLALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEA 160
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA----------APEIPQALI 244
N +++ P EGSL + G P+D + A AP +A
Sbjct: 161 NAKRNGVRPRFLEGSLEAALPFG--------PFDLL---VANLYAELHAALAPRYREA-- 207
Query: 245 DQLKPGGRMV 254
L PGGR +
Sbjct: 208 --LVPGGRAL 215
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 5e-09
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 15/115 (13%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
PG L+ G G G T A P ++ PE + + +N EK+
Sbjct: 34 VYPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEKNGIK----- 87
Query: 208 GSLSVHVGDGRK-GWPEFAPYDAIHVGAA---APEIPQAL---IDQLKPGGRMVI 255
++ + + + + +D I V +AL LKPGG + +
Sbjct: 88 -NVKFLQANIFSLPFED-SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 7e-09
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
LQLL N +PG LD+G GTG LT A +G ++ + IEK+
Sbjct: 50 LQLL--NPQPGEFILDLGCGTGQLTEKIA---QSGAEVLGTDNAATM-------IEKARQ 97
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA---APEIPQAL---IDQLKPGGRMVI 255
L V D R + P DA+ A E A+ LK GGR V
Sbjct: 98 ----NYPHLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA 152
Query: 256 PVGN 259
G
Sbjct: 153 EFGG 156
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 13/123 (10%), Positives = 34/123 (27%), Gaps = 11/123 (8%)
Query: 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214
A+ I G + + ++ E + ++ + +
Sbjct: 60 AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG----YSPSRVRFLL 115
Query: 215 GDGRKGWPEFA--PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDK 269
A Y + + ++ A L+ GG +V+ + D + D+
Sbjct: 116 SRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLA--DALLDGTIADQ 173
Query: 270 NQD 272
+
Sbjct: 174 TRK 176
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
+KPG LD+GSG+G + +A G G++ + + E +
Sbjct: 33 RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAE---ELGV--S 85
Query: 208 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQLKPGGRMVI 255
+ D G+ D G + L LKPGG M+I
Sbjct: 86 ERVHFIHNDAA-GYVANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLI 138
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-08
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
L+L+ + G LD+GS YL + G A+ E + S+++N+E
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAI----HVGAAAPEIPQALIDQLKPGGRMVI 255
+ + V + +G + E I G I + + +L R+++
Sbjct: 65 -----KEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLIL 117
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 24/139 (17%)
Query: 143 QLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
++L EN+ LD+G G G + + +I+ +++
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVI-GIALADEVKSTTMADINRR------AIKLAKENI 94
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAAPEIPQALIDQ----LKPG 250
L + V D + + Y+ I G E+ +I++ LK
Sbjct: 95 KLNNLDNYDIRVVHSDLYENVKD-RKYNKIITNPPIRAGK---EVLHRIIEEGKELLKDN 150
Query: 251 GRMVIPVGNIFQDLKVVDK 269
G + + V Q K + K
Sbjct: 151 GEIWV-VIQTKQGAKSLAK 168
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-08
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 22/128 (17%)
Query: 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195
+T + E+ +K LD+G G GY T + +AVGV+ ++
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMI------ 88
Query: 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQALIDQ---L 247
+ LS GD F ++AI + E +AL + L
Sbjct: 89 ---QKGKERGEGPDLSFIKGDLSS--LPFENEQFEAIMAINSLEWTEEPLRALNEIKRVL 143
Query: 248 KPGGRMVI 255
K G I
Sbjct: 144 KSDGYACI 151
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 31/135 (22%)
Query: 136 HMHATCLQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI 193
H H L L+ + + LDIG+G G+ F+ V +GV+ E+V
Sbjct: 4 HHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMV---- 56
Query: 194 QNIEKSAAAPLLKEG--SLSVHVGDGRKGWPEFAPY-----DAIHVGAAA---PEIPQAL 243
+ A++ ++G ++ G E P+ D I AA ++ +A+
Sbjct: 57 ----EVASSFAQEKGVENVRFQQGTA-----ESLPFPDDSFDIITCRYAAHHFSDVRKAV 107
Query: 244 IDQ---LKPGGRMVI 255
+ LK GR ++
Sbjct: 108 REVARVLKQDGRFLL 122
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 6e-08
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
L+ + + DIGS YL CFA+ A+ E + S+ + + S
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL 70
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAI---HVGAAA-PEIPQALIDQLKPGGRMVI 255
+ V G+G + D I +G I + +L ++++
Sbjct: 71 -----TEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLIL 123
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 7e-08
Identities = 40/172 (23%), Positives = 57/172 (33%), Gaps = 11/172 (6%)
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
P L++L+ G LD+G G+LT A GP R VG++ L+ S+ Q
Sbjct: 30 PSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQ 88
Query: 195 NIEK--SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQAL-IDQLKPGG 251
NI S L + +G +G A P A L
Sbjct: 89 NIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGAD 148
Query: 252 RMVIPVGNIFQDLKVVDKNQDGSLSIWSETSV-------RYVPLTSRDAQLR 296
V P +F V D + E V ++V L D L+
Sbjct: 149 TSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK 200
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-08
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
+ E + +D+G G G T A + P + +G + + I+ E
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATM----IKTAEVIKEGS 84
Query: 204 LLKEGSLSVHVGDG------RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGR 252
++S + + D I A + ++ L+ G
Sbjct: 85 PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGT 144
Query: 253 MVI 255
+ I
Sbjct: 145 IAI 147
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 31/204 (15%)
Query: 78 VNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHM 137
V K+ ++ L Y + S + + + + T + M +
Sbjct: 2 VMKHLSLTPELYKYLLDISLREHPALAALRKE------TSTMELANMQVA--------PE 47
Query: 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
A +Q+L + L++G+ TGY +L + G+ + + +
Sbjct: 48 QAQFMQMLIRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR 106
Query: 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLK 248
++ +K + +G +D I + A + + +
Sbjct: 107 EAKQEHKIK-----LRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVT 161
Query: 249 PGGRMVIPVGNIFQDLKVVDKNQD 272
P G +I + NIF D KV+D N
Sbjct: 162 PKG--LIAIDNIFWDGKVIDPNDT 183
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-07
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 134 APHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 192
LL + L+ ++ D+G G G T G++ ++
Sbjct: 15 EDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDM---- 69
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA---APEIPQAL---IDQ 246
+EK+A + + + D W D ++ A P+ L +DQ
Sbjct: 70 ---LEKAAD----RLPNTNFGKADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQ 121
Query: 247 LKPGGRMVIPVG 258
L+ GG + + +
Sbjct: 122 LESGGVLAVQMP 133
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 25/123 (20%), Positives = 34/123 (27%), Gaps = 26/123 (21%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 200
L L G L++G G GY G + PEL A
Sbjct: 34 LTKFLGELPAGAKILELGCGAGYQAEAML----AAGFDVDATDGSPELA----------A 79
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ--------LKPGGR 252
A + V + YDA+ A +P+ + LKPGG
Sbjct: 80 EAS--RRLGRPVRTMLFHQ-LDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGL 136
Query: 253 MVI 255
Sbjct: 137 FYA 139
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 24/169 (14%), Positives = 48/169 (28%), Gaps = 23/169 (13%)
Query: 128 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 182
N + +M + + + + + +++G TGY AL + G+ +
Sbjct: 43 ANESHPDSYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAI 101
Query: 183 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-------PYDAIHVGAA 235
+ E + I K+ + D YD V A
Sbjct: 102 DFDREAYEIGLPFIRKAGVEHKIN-----FIESDAMLALDNLLQGQESEGSYDFGFVDAD 156
Query: 236 APEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSET 281
P + L+ +K GG ++ N V + +
Sbjct: 157 KPNYIKYHERLMKLVKVGG--IVAYDNTLWGGTVAQPESEVPDFMKENR 203
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 30/123 (24%)
Query: 143 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV---SSIQNIEK 198
+ L +D G G G+ + ++ + ++
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVIT 64
Query: 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI--PQALIDQ----LKPGGR 252
+ + + S D I + ++ Q +I + LK GR
Sbjct: 65 LSDPKEIPDNS-----------------VDFILFANSFHDMDDKQHVISEVKRILKDDGR 107
Query: 253 MVI 255
++I
Sbjct: 108 VII 110
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 19/134 (14%)
Query: 143 QLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
+ ++L +D+G G G + L PQ + V V+ P V SS N+
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVI-GLTLLDKNPQAKVVFVDESPMAVASSRLNV---E 267
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAA-PEIPQALIDQ----LKP 249
+ + G ++A+ H A + + LK
Sbjct: 268 TNMPEALDRCEFMINNALSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI 326
Query: 250 GGRMVIPVGNIFQD 263
G + I V N D
Sbjct: 327 NGELYI-VANRHLD 339
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-07
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 25/127 (19%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
L E P + +D G G T + R +G++ + A
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSAL---------EIA 94
Query: 202 APLLKEGSLSVHVGDGRKGWPEFA----PYDAIHVGAAA-----PEIPQALIDQ----LK 248
A ++S + DG DA E + L L
Sbjct: 95 AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLG 154
Query: 249 PGGRMVI 255
G M +
Sbjct: 155 KQGAMYL 161
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 30/130 (23%)
Query: 138 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
H T + +E + + D+G+G+G L A A +G + + E + ++ +
Sbjct: 44 HQTTQLAMLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLATDISDESMTAAEE 101
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA----------APEIPQALI 244
N + + + +D I A P++
Sbjct: 102 NAALNGIYDIA------LQKTSLLADVDG--KFDLI---VANILAEILLDLIPQLDSH-- 148
Query: 245 DQLKPGGRMV 254
L G+++
Sbjct: 149 --LNEDGQVI 156
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 16/128 (12%)
Query: 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213
ALD+G+ TGY AL + GR V E + ++ A + +
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID-----LR 126
Query: 214 VGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNIFQDL 264
+ + E +D V A + + L+PGG ++ V +
Sbjct: 127 LKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGG--ILAVLRVLWRG 184
Query: 265 KVVDKNQD 272
KV+ +
Sbjct: 185 KVLQPPKG 192
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 23/160 (14%)
Query: 128 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 182
A M + L +L + + + ++IG TGY AL + G+ + +
Sbjct: 52 VTAKHPWNIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAM 110
Query: 183 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-------PYDAIHVGAA 235
+ E + I+K+ + G E YD I V A
Sbjct: 111 DINKENYELGLPVIKKAGVDHKID-----FREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165
Query: 236 APEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQD 272
+ LID +K GG VI N + VV
Sbjct: 166 KDNYLNYHKRLIDLVKVGG--VIGYDNTLWNGSVVAPPDA 203
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 32/175 (18%)
Query: 124 MAIGYNATISAPHM----------HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV 173
M + + T LL + +K LD+ G G +
Sbjct: 1 MGFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG 60
Query: 174 GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIH 231
VGV+ +++ + + + +E ++ VGD RK F +D +
Sbjct: 61 ---FEVVGVDISEDMIRKAREYAKS-------RESNVEFIVGDARK--LSFEDKTFDYVI 108
Query: 232 VGAAAPEIPQALIDQ--------LKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIW 278
+ ++Q LKP G+ ++ ++ + L + ++ W
Sbjct: 109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYW 163
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
NL +D+G G+G +T A ++++ +I+ +++ A
Sbjct: 32 NLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDG----AIEVTKQNLAK--FNI 82
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVG--AAAPEIPQALIDQLKPGGRMVI 255
+ + G + + +G +I + L K +V
Sbjct: 83 KNCQIIKGRAEDVLDKLEF-NKAFIGGTKNIEKIIEIL--DKKKINHIVA 129
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 26/135 (19%)
Query: 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 188
T ++ A + L+ L PG L++G+GTGY P + VGVE +
Sbjct: 14 YGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAM 68
Query: 189 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQAL 243
+ + + G P F +D + + ++ + L
Sbjct: 69 L--------AVGRR---RAPEATWVRAWGEA-LP-FPGESFDVVLLFTTLEFVEDVERVL 115
Query: 244 IDQ---LKPGGRMVI 255
++ L+PGG +V+
Sbjct: 116 LEARRVLRPGGALVV 130
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199
+ L G LD+G+G G LT A VGVE V+S + +E +
Sbjct: 222 ALQERLGPEGVRGRQVLDLGAGYGALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEAN 278
Query: 200 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAA-PEIPQALIDQ----LK 248
A D + E A +D I HVG A ++ QA ++ L+
Sbjct: 279 ALKA-------QALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR 331
Query: 249 PGGRMVIPVGNIFQ 262
PGG + V N F
Sbjct: 332 PGGVFFL-VSNPFL 344
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 31/203 (15%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMH 138
L Y S S + + R T +PM I
Sbjct: 15 KGITGFDPSLYSYLQSISADDSFYLAQLRRE------TAHLPGAPMQIS--------PEQ 60
Query: 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198
A L LL L+IG GY AL + P G+ + + P + + +K
Sbjct: 61 AQFLGLLISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
Query: 199 SAAAPLLKEGSLSVHVGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKP 249
+ A + + +G + +D I + A P + ++ L+
Sbjct: 120 AGVAEKIS-----LRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRR 174
Query: 250 GGRMVIPVGNIFQDLKVVDKNQD 272
GG ++ + N+ KV + +
Sbjct: 175 GG--LMVIDNVLWHGKVTEVDPQ 195
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 6e-07
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 24/114 (21%)
Query: 151 PGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209
LD+GSGTG T A G + G+E LV + A S
Sbjct: 41 VDGVILDVGSGTGRWTGHLA----SLGHQIEGLEPATRLV--------ELARQ---THPS 85
Query: 210 LSVHVGDGRKGWPEFAPYDAIHVGAA-----APEIPQAL---IDQLKPGGRMVI 255
++ H G + + + E+P AL ++ GG +++
Sbjct: 86 VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 32/209 (15%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMH 138
KN ++ E L+ Y S + + + + T + M I
Sbjct: 3 RKNISLTESLEEYIFRNSVREPDSFLKLRKE------TGTLAQANMQIS--------PEE 48
Query: 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198
L +L + ++IG+ TGY + CFA + G+ + + E + + ++
Sbjct: 49 GQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107
Query: 199 S-----------AAAPLLKE-GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QAL 243
+ +A L+ + D + A P +
Sbjct: 108 NGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLI 167
Query: 244 IDQLKPGGRMVIPVGNIFQDLKVVDKNQD 272
+ LKPGG ++ N+ D V D +
Sbjct: 168 LKLLKPGG--LLIADNVLWDGSVADLSHQ 194
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
+ LD+G+GTG L+A P+ V+ S + +E A
Sbjct: 37 SIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVD-------MSEKMLEI-AKNR 87
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALI----DQLKPGGR 252
+ D K + YD + H+ E + L LK G
Sbjct: 88 FRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHL---EDEDKKELYKRSYSILKESGI 143
Query: 253 MVI 255
+
Sbjct: 144 FIN 146
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-07
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 29/121 (23%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
LK LD+ +G G++ FA V + V + +++ K A A +
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDIL--------KVARAFIEGN 82
Query: 208 G--SLSVHVGDGRKGWPEFAPY-----DAIHVGAAA---PEIPQALIDQ---LKPGGRMV 254
G + GD E P+ + AA P + + LK GG+++
Sbjct: 83 GHQQVEYVQGDA-----EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 137
Query: 255 I 255
+
Sbjct: 138 L 138
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 9e-07
Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 26/122 (21%)
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
L + K + L+ G GTG LT L G+E E+ A
Sbjct: 38 LEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMR----------MIAK 84
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQAL---IDQLKPGGRM 253
S+ GD + D I H+ E A+ L GG++
Sbjct: 85 EKLPKEFSITEGDFLS-FEVPTSIDTIVSTYAFHHL--TDDEKNVAIAKYSQLLNKGGKI 141
Query: 254 VI 255
V
Sbjct: 142 VF 143
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 30/136 (22%), Positives = 42/136 (30%), Gaps = 24/136 (17%)
Query: 143 QLLEENLKPGMHA--LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
QLL L P LD+G G G L + P+ R + V +S + +
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVL-SVAFARHSPKIRLTLCDVSAPAVEASRATLAANG 244
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVG-AAAPEIPQALIDQ----LKP 249
V + +D I H G + + Q LI L
Sbjct: 245 V-------EGEVFASNVFSEVKG--RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295
Query: 250 GGRMVIPVGNIFQDLK 265
GG + I V N F
Sbjct: 296 GGELRI-VANAFLPYP 310
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 29/151 (19%)
Query: 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIP 186
+ +A + +L++ G LD G G G + + QG +G + P
Sbjct: 23 WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLS----KQGHDVLGTDLDP 78
Query: 187 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH-----VGAAAPEIPQ 241
L+ A VGD +D I +G A + +
Sbjct: 79 ILI--------DYAKQ---DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGRE 127
Query: 242 ALIDQ----LKPGGRMVI----PVGNIFQDL 264
+ L GR VI G +F D
Sbjct: 128 PALANIHRALGADGRAVIGFGAGRGWVFGDF 158
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 32/203 (15%), Positives = 64/203 (31%), Gaps = 30/203 (14%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMH 138
+ L Y + S + ++ + T M
Sbjct: 6 INTTLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYA-----MQTA--------PEQ 52
Query: 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198
A L LL + ++ +DIG+ TGY L + G + + + + + EK
Sbjct: 53 AQLLALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK 111
Query: 199 SAAAPLLKEGSLSVHVGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKP 249
+ + + + + E YD I++ A + + L+
Sbjct: 112 AG-----LSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLRE 166
Query: 250 GGRMVIPVGNIFQDLKVVDKNQD 272
GG +I V N+ + +V D+
Sbjct: 167 GG--LIAVDNVLRRGQVADEENQ 187
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 14/144 (9%)
Query: 119 YVDSPMAIGYNATISAPHMHATCLQLLE--ENLKPGMHALDIGSGTGYLTACFALMVGPQ 176
++ N P L+ L +NL DIG GTG T A V
Sbjct: 12 ELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT-- 69
Query: 177 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236
G+ G++ + + + + L + ++ VG D I A
Sbjct: 70 GQVTGLDFLSGFID---IFNRNARQSGL--QNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124
Query: 237 --PEIPQALIDQ---LKPGGRMVI 255
+ L + LK GG + +
Sbjct: 125 YNIGFERGLNEWRKYLKKGGYLAV 148
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
LQLL + + L+IG+ GY T A + GR V +E + + NIE++
Sbjct: 50 LQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN- 107
Query: 202 APLLKEGSLSVHVGDGRKGWPEFA-----PYDAIHVGAAAPEIP---QALIDQLKPGGRM 253
+ V G + P+D I + A P + + +PG
Sbjct: 108 ----LNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGT-- 161
Query: 254 VIPVGNIFQDLKVVDKNQD 272
VI N+ ++ +V+D +
Sbjct: 162 VIIGDNVVREGEVIDNTSN 180
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 19/156 (12%)
Query: 128 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 182
N P L LL + L+IG+ GY T A + G+ + +
Sbjct: 36 NNHRAGLPAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTL 94
Query: 183 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA---PYDAIHVGAAAPEI 239
E + +N++ + + +++ G + +D I + A P
Sbjct: 95 EADAHHAQVARENLQLAG-----VDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNN 149
Query: 240 P---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQD 272
P + + +PG +I N+ +D +VV+
Sbjct: 150 PHYLRWALRYSRPGT--LIIGDNVVRDGEVVNPQSA 183
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
L DIG GTG T A V G+ G++ P+ + +N K+ A
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCA----- 95
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA--PEIPQALIDQ---LKPGGRMVI 255
+ G + D I A + + + LK GG + +
Sbjct: 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 148
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 13/123 (10%)
Query: 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE--------LVVSSIQ 194
L E L +D G G TA A G + + + L I+
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
Query: 195 NIE--KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGR 252
N E L + G+ A I E + ++D+L+ GGR
Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGR 130
Query: 253 MVI 255
+ I
Sbjct: 131 LAI 133
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 26/148 (17%)
Query: 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 188
T H LEE LK LD+G GTG + V V+
Sbjct: 32 YETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVD----- 83
Query: 189 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAAA----PEIPQA 242
S + +E + ++G +V F ++A+ +A
Sbjct: 84 --PSKEMLEVAR-----EKGVKNVVEAKAED--LPFPSGAFEAVLALGDVLSYVENKDKA 134
Query: 243 LIDQ---LKPGGRMVIPVGNIFQDLKVV 267
+ L P G ++ V N + L+ +
Sbjct: 135 FSEIRRVLVPDGLLIATVDNFYTFLQQM 162
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 23/117 (19%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLKE 207
+ L+IG G T A P + + ++ + I + A +
Sbjct: 49 SGAVSNGLEIGCAAGAFTEKLA----PHCKRLTVID-------VMPRAIGR-ACQRTKRW 96
Query: 208 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIP--QALIDQLKPGGRMVI 255
+S D + +D I ++ ++ L PGG +V
Sbjct: 97 SHISWAATDILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-06
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKE 207
++ G L +G+ +G + + ++ G+A GVE P +V + ++ PLL +
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLAD 133
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
D ++V A P+ I LK G M++ +
Sbjct: 134 ARFPQSYK------SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVI 181
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 7e-06
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 26/136 (19%)
Query: 134 APHMHATCLQLLEE------NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 187
H Q+ L++G GTG + R + ++
Sbjct: 16 RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI---ARGYRYIALDADAA 72
Query: 188 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQA 242
++ E + + V D R P + V P+ P+
Sbjct: 73 ML-------EVFRQKIAGVDRKVQVVQADARA-IP-LPDESVHGVIVVHLWHLVPDWPKV 123
Query: 243 LIDQ---LKPGGRMVI 255
L + LKPGG ++
Sbjct: 124 LAEAIRVLKPGGALLE 139
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 8e-06
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 22/138 (15%)
Query: 137 MHATCLQLLEE--NLKPGMHALDIGSGTGYLTACF-----ALMVGPQGRAVGVEHIPELV 189
M ++ + K + L IG G G + A G VE E +
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 190 VSSIQNIEKSAAAPLLKEGSLSVHVG------DGRKGWPEFAPYD---AIHVGAAAPEIP 240
+ + K+ L+ + H E +D I + +IP
Sbjct: 96 AKYKELVAKT---SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP 152
Query: 241 QAL---IDQLKPGGRMVI 255
L L +M+I
Sbjct: 153 ATLKFFHSLLGTNAKMLI 170
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 9e-06
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN---IEKSAAAPL 204
+++ G LD+G G G A R G+ +S Q ++ AA L
Sbjct: 58 DVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGIS------ISRPQVNQANARATAAGL 109
Query: 205 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--QALIDQ----LKPGGRMVI 255
++ D E A +DA+ + +P + + L+PGG + I
Sbjct: 110 --ANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 17/117 (14%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKE 207
+KPG L +G+ +G + + +VGP G VE I +K + P++
Sbjct: 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI-- 132
Query: 208 GSLSVHVGDGRK--GWPEFAP-YDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
D R + D I A P+ + + L+ GG VI +
Sbjct: 133 -------EDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
L L + P L+IG+ GY A + P+ V +E + ++++
Sbjct: 46 LLHLLKMAAP-ARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALG- 102
Query: 202 APLLKEGSLSVHVGDGRKGWPEFA---PYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255
E + + GD + + +D + + AA + ++PGG +I
Sbjct: 103 ----LESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGG--LI 156
Query: 256 PVGNIFQDLKVVDKNQD 272
N+ V + + +
Sbjct: 157 LSDNVLFRGLVAETDIE 173
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 129 NATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 187
+ T+ AP ++ + G +DIGSG G L+ A ++
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSD--FSIRALDFSKH 77
Query: 188 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY-----DAIHVGAAA---PEI 239
+ +++NI + + + GD P D I + ++
Sbjct: 78 MNEIALKNIADANL-----NDRIQIVQGDV-----HNIPIEDNYADLIVSRGSVFFWEDV 127
Query: 240 PQALIDQ---LKPGGRMVIPVGNIFQDL 264
A + LK GG+ I G ++L
Sbjct: 128 ATAFREIYRILKSGGKTYIGGGFGNKEL 155
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 30/129 (23%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 200
L + + LD+G G G+L A +G AVGV+ LV A
Sbjct: 45 LLAILG--RQPERVLDLGCGEGWLLRALA----DRGIEAVGVDGDRTLV---------DA 89
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFA-PYDAI---------HVGAAAPEIPQALIDQLKPG 250
A + YD I + + L PG
Sbjct: 90 ARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTL----LVPG 145
Query: 251 GRMVIPVGN 259
G +VI +
Sbjct: 146 GALVIQTLH 154
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195
+ +A LL+ K LDIG +G L A G + G+E PE
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKEN-GTR--VSGIEAFPE-------- 65
Query: 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAI-------HVGAAAPEIPQALIDQ 246
AA KE V +GD + +D + H+ + P A+I++
Sbjct: 66 -----AAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL----FD-PWAVIEK 115
Query: 247 ----LKPGGRMVIPVGNI 260
+K G ++ + N+
Sbjct: 116 VKPYIKQNGVILASIPNV 133
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
+K L +G+ G + + +G +E+ P ++ + + A +
Sbjct: 72 IKRDSKILYLGASAGTTPS-HVADIADKGIVYAIEYAPR----IMRELLDACA----ERE 122
Query: 209 SLSVHVGDGRK--GWPEFAP-YDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
++ +GD K + D I+ A P + LI LK GG +I +
Sbjct: 123 NIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 28/145 (19%), Positives = 44/145 (30%), Gaps = 16/145 (11%)
Query: 119 YVDSPMAIGYNATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQG 177
P+ S +L L+ LD+G+G G G
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-- 106
Query: 178 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI---HVGA 234
+ P +N E + A L +++V G + E YD I
Sbjct: 107 SIDCLNIAPVQNK---RNEEYNNQAGL--ADNITVKYGSFLEIPCEDNSYDFIWSQDAFL 161
Query: 235 AAPEIPQALIDQ----LKPGGRMVI 255
+P+ + + LKP G M I
Sbjct: 162 HSPD-KLKVFQECARVLKPRGVMAI 185
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 22/151 (14%)
Query: 121 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAV 180
D A Y I + + L++ +G G LT F G V
Sbjct: 52 DEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL----DLGWEV 107
Query: 181 -GVEHIPELVVSSIQNI--EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA- 236
+E ++ ++ A AP ++ GD + + + + + +
Sbjct: 108 TALELSTSVL-----AAFRKRLAEAPADVRDRCTLVQGDMSA-FALDKRFGTVVISSGSI 161
Query: 237 -----PEIPQAL---IDQLKPGGRMVIPVGN 259
+ + L+PGG+ ++ +
Sbjct: 162 NELDEADRRGLYASVREHLEPGGKFLLSLAM 192
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 26/139 (18%)
Query: 125 AIGYNAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 183
Y+ T + + + LL L G DIG+GTG + + VE
Sbjct: 9 GKQYSQTRVPDIRIVNAIINLLN--LPKGSVIADIGAGTGGYS---VALANQGLFVYAVE 63
Query: 184 HIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEFAPYDAIHVGAAA---PEI 239
+ +++ P + G P+ D + A +
Sbjct: 64 PSIVM-------RQQAVVHP-----QVEWFTGYAENLALPD-KSVDGVISILAIHHFSHL 110
Query: 240 PQALIDQ---LKPGGRMVI 255
++ + ++ G +++
Sbjct: 111 EKSFQEMQRIIRDGTIVLL 129
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-05
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 12/126 (9%)
Query: 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI 193
+ L++ +D+G G G L + GV+ + +
Sbjct: 14 NQQRMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQ 70
Query: 194 QNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAA-APEIPQALID 245
+ +++ P + L + G F YDA H+ + + L +
Sbjct: 71 ERLDR-LRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129
Query: 246 QLKPGG 251
+P
Sbjct: 130 FAQPKI 135
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 30/213 (14%)
Query: 74 SGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATIS 133
S V + M + + Y + + + +E + V+ +
Sbjct: 11 SSGLVPRGSHMDDLNKKYLIDLHQHQNSSIEVLREFA--------EVNEVPIVD------ 56
Query: 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI 193
+ ++ L + L+IG+ GY + FA + +E ++ +
Sbjct: 57 --RLTLDLIKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAK 112
Query: 194 QNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA--PYDAIHVGAAAPEIP---QALIDQLK 248
QN+ E + + G+ + + YD I + AA + + LK
Sbjct: 113 QNLATYH-----FENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLK 167
Query: 249 PGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSET 281
G ++ N+ V D S ++
Sbjct: 168 HQG--LVITDNVLYHGFVSDIGIVRSRNVRQMV 198
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 143 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSA 200
++LE + LD+G G G + A G V + SI N+E+
Sbjct: 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAM----SIANVERIK 74
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA-----APEIPQAL---IDQLKPGGR 252
+ L +L V D YD I A IP + KPGG
Sbjct: 75 SIENLD--NLHTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 131
Query: 253 MVI 255
+I
Sbjct: 132 NLI 134
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-05
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 18/116 (15%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN---IEKSAAAPL 204
P +D G G G G R GV +S+ Q ++ +
Sbjct: 114 QAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVT------LSAAQADFGNRRARELRI 165
Query: 205 LKEGSLSVHVGDGRKGWPEFAPYDAI----HVGAA-APEIPQALIDQLKPGGRMVI 255
+ + V + + A ++ LK GGR V
Sbjct: 166 --DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVT 219
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 8e-05
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
+KPG L +G +G + + +VG +G+ G+E P ++ + +E+
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-------- 122
Query: 209 SLSVHVGDGRK--GWPEFAP-YDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
++ +GD K + P D I A P + LID LK GG +I V
Sbjct: 123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 35/133 (26%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 200
L+ K LDIG G G F + +G ++GV+ +++
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEGK----- 82
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEF--APYDAI-------HVGAAAPEIPQALIDQ----L 247
+V D + D + H+ PE L+ +
Sbjct: 83 ---------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL---DPERLFELLSLCYSKM 130
Query: 248 KPGGRMVIPVGNI 260
K +VI N
Sbjct: 131 KYSSYIVIESPNP 143
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 135 PHMHAT--CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 192
A +++ + G +D G+G G L AC + ++G + P+ + ++
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETA 90
Query: 193 IQNIEK 198
+N
Sbjct: 91 KRNCGG 96
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 36/126 (28%)
Query: 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204
+ L P ++IG GTG +GVE + A
Sbjct: 41 AVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMA----------EIA-- 81
Query: 205 LKEGSLSVHVGDGRKGWPEFAP-----YDAIHVGAAA---PEIPQALIDQ---LKPGGRM 253
++ + V G E P +D + + +AL + LK GG +
Sbjct: 82 -RKRGVFVLKGTA-----ENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL 135
Query: 254 VIPVGN 259
++ + +
Sbjct: 136 IVGIVD 141
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAP 203
+ E ++PG DIG GTG T A GV+ S + +E +
Sbjct: 27 VLEQVEPGKRIADIGCGTGTATLLLA-----DHYEVTGVD-------LSEEMLEIAQEKA 74
Query: 204 LLKEGSLSVHVGDGRK-GWPE-----FAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMV 254
+ + V D R+ PE D+++ ++ Q L GG+++
Sbjct: 75 METNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
Query: 255 IPVGNIFQDLKVVD 268
V + ++ + +
Sbjct: 135 FDVHSPYKMETLFN 148
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 2e-04
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 137 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS--- 192
Q+++E + +D+GSG G + A + GVE +
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETM 216
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAPYDAIHVGAAA--PEIPQALID--- 245
+ K K ++ GD A I V A PE+ L +
Sbjct: 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFA 276
Query: 246 QLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVP 287
+K GGR+V + ++ +N +I + +
Sbjct: 277 NMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLK 318
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 24/132 (18%)
Query: 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQN 195
MH ++ +PG + L++GS G T+ VE +S +
Sbjct: 29 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQ----EHFNDITCVE-------ASEEA 76
Query: 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQLK 248
I A LK+G ++ YD I H+ + + D L
Sbjct: 77 IS--HAQGRLKDG-ITYIHSRFEDAQLP-RRYDNIVLTHVLEHIDDPVALLKRINDDWLA 132
Query: 249 PGGRMVIPVGNI 260
GGR+ + N
Sbjct: 133 EGGRLFLVCPNA 144
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
D+G+G G A + + E E+ + +++E A
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF--S 89
Query: 208 GSLSVHVGDGRKGWPEFAP 226
+ V D
Sbjct: 90 ARIEVLEADVTLRAKARVE 108
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 32/160 (20%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 200
L+ LD+ GTG F + G+E S + +
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFT----KEFGDTAGLE-------LSEDMLTHAR 79
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------PEIPQALI---DQLKPG 250
+ ++H GD R + + A+ ++ E+ A+ + L+PG
Sbjct: 80 K----RLPDATLHQGDMRD-FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPG 134
Query: 251 GRMVIPVGNIFQDLK-----VVDKNQDGSLSIWSETSVRY 285
G +V+ + +DG SVR
Sbjct: 135 GVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE 174
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 7e-04
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 24/119 (20%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
L LDIGSG G G G++ + S +
Sbjct: 52 ELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGID------ICSNIVNMANERVSG--N 101
Query: 208 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQ----LKPGGRMVI 255
+ D +D I + L + LKP G ++I
Sbjct: 102 NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKN---KLFQKCYKWLKPTGTLLI 157
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 8e-04
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 30/177 (16%)
Query: 137 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE---LVVSS 192
+ + ++ LK G +D+GSG G AL G + G E + + L +
Sbjct: 227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCA-LSFGCEIMDDASDLTILQ 285
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY--DAIHVGAA----APEIPQALID- 245
+ ++K ++ ++ + A + ++ + +
Sbjct: 286 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKI 345
Query: 246 --QLKPGGRMV--------------IPVGNIFQDLKVVD-KNQDGSLSIWSETSVRY 285
K G +++ V NIF LKV ++ S+S W+ + Y
Sbjct: 346 LQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS-WTHSGGEY 401
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 100.0 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 100.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 100.0 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.97 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.96 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.96 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.93 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.92 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.68 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.68 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.68 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.67 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.65 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.64 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.62 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.62 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.61 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.6 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.6 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.59 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.59 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.59 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.59 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.59 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.58 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.58 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.57 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.57 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.57 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.56 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.56 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.55 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.55 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.55 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.55 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.55 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.55 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.55 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.54 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.54 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.54 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.54 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.54 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.54 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.53 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.53 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.53 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.53 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.52 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.52 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.52 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.52 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.52 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.51 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.51 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.51 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.51 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.51 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.51 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.51 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.5 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.5 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.5 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.5 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.5 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.5 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.5 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.5 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.49 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.49 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.49 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.49 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.49 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.49 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.49 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.49 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.49 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.49 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.49 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.49 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.48 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.48 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.48 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.48 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.48 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.47 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.47 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.47 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.47 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.47 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.47 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.47 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.47 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.47 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.47 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.46 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.46 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.46 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.46 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.46 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.46 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.46 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.46 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.45 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.45 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.44 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.44 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.44 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.44 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.44 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.44 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.44 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.44 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.44 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.44 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.44 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.44 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.43 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.43 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.43 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.43 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.43 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.43 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.43 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.42 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.42 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.42 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.41 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.41 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.4 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.4 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.4 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.4 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.39 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.39 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.39 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.38 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.38 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.38 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.37 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.37 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.37 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.37 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.36 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.36 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.36 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.36 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.36 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.35 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.35 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.34 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.34 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.34 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.33 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.33 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.32 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.32 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.32 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.32 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.32 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.32 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.31 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.31 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.31 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.31 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.31 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.31 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.31 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.31 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.31 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.3 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.3 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.3 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.3 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.29 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.29 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.29 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.28 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.28 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.27 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.27 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.27 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.27 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.27 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.25 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.25 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.25 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.25 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.24 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.24 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.23 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.23 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.22 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.22 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.22 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.21 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.21 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.21 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.21 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.2 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.2 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.2 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.19 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.18 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.18 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.17 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.16 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.15 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.15 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.15 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.14 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.14 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.13 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.12 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.12 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.12 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.11 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.11 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.1 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.09 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.09 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.08 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.06 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.04 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.04 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.03 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.03 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.02 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.01 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.0 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.99 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.98 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.97 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.97 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.97 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.97 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.96 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.95 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.94 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.93 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.92 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.91 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.91 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.88 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.85 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.85 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.83 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.82 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.81 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.78 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.78 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.77 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.76 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.64 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.61 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.61 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.59 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.58 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.34 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.31 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.3 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.24 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.19 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.11 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.06 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.9 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.79 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.75 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.7 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.65 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.64 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.6 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.56 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.49 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.48 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.45 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.45 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.37 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 97.29 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.23 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 97.22 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.21 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.21 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.18 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.15 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.09 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.08 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.06 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 97.06 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.9 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.88 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.86 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.84 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.83 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.78 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.76 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.75 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.75 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.73 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.73 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.73 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.72 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.72 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.72 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.66 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.61 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.58 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.53 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.51 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.49 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.48 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.48 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.45 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.44 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.44 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.37 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.37 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.34 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.34 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.27 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.22 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.16 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.09 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.04 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.99 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.98 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.97 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.93 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.92 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.89 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.85 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.83 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.82 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.8 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.8 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.71 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.58 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.52 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 95.52 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.46 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.39 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.31 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.27 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.13 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.08 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.04 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.03 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 94.97 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.9 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.87 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 94.75 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.74 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 94.72 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.71 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.39 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.92 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.79 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 93.65 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.08 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 93.06 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.03 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 92.8 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.41 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 91.85 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.36 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.33 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 91.21 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.65 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 90.46 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.13 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 90.02 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 89.81 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 89.52 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.49 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.13 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 88.93 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 88.9 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.46 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 88.41 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.04 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 87.7 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 87.24 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 87.03 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 86.98 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.92 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 86.72 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 86.56 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.42 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 86.19 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 86.06 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 85.76 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.63 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.4 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 84.96 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 84.25 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 84.21 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 83.96 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 83.55 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 83.52 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 83.49 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 83.02 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 82.86 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 82.68 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 82.58 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 82.45 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 82.21 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 81.94 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 81.53 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 80.74 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 80.2 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 80.02 |
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=246.66 Aligned_cols=215 Identities=46% Similarity=0.805 Sum_probs=188.9
Q ss_pred hhcccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccC
Q 022372 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENL 149 (298)
Q Consensus 70 ~~~~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l 149 (298)
.++|++++ .++++|+++|.+.|++.++++.++|..+||+.|+|.. +|.|.++++++++++++|++.+.+++.+..++
T Consensus 6 ~m~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~--~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 82 (227)
T 1r18_A 6 HMAWRSVG-ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVTISAPHMHAFALEYLRDHL 82 (227)
T ss_dssp CCCCCCBC-SSHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSC--TTBSSCEEEETTEEECCHHHHHHHHHHTTTTC
T ss_pred eeeeecCc-cHHHHHHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcc--cccCCCcccCCCCccCChHHHHHHHHHHHhhC
Confidence 45798876 7799999999999988899999999999999999986 99999999999999999999999999985557
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCC-----CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGP-----QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~-----~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
+++.+|||+|||+|+.+..+++..+. .++|+++|+++++++.|++++...+.. .+...+++++.+|..+.+++.
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc-ccCCCceEEEECCcccCCCcC
Confidence 88999999999999999999997642 359999999999999999998765410 000168999999998766554
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEEEECC--CceeEEEEEEcCCCCeEEEEeeeEEEeec
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN--IFQDLKVVDKNQDGSLSIWSETSVRYVPL 288 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~--~~q~~~~~~~~~~g~~~~~~l~~v~fvPl 288 (298)
++||+|+++.+.+++++++.++|||||+++++++. ..|.+..+++..+|.++.+.+++|+||||
T Consensus 162 ~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~p~ 227 (227)
T 1r18_A 162 APYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227 (227)
T ss_dssp CSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred CCccEEEECCchHHHHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEEEeeC
Confidence 78999999999999999999999999999999986 45888889998888999999999999997
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=241.29 Aligned_cols=215 Identities=35% Similarity=0.592 Sum_probs=184.2
Q ss_pred hcccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccCC
Q 022372 71 RSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLK 150 (298)
Q Consensus 71 ~~~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~ 150 (298)
++|++++ .++++|+++|.+.|.+.++++.++|..+||+.|+|+. +|.|.++.+++++++++|++.+.+++.+...++
T Consensus 3 ~~w~~~~-~~~~~~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~--~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 79 (227)
T 2pbf_A 3 NMYKLSE-NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTISAPHMHALSLKRLINVLK 79 (227)
T ss_dssp ------C-CCHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSS--TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSC
T ss_pred cccccCc-hhHHHHHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcc--cCCCCccccCCCCccCChHHHHHHHHHHHhhCC
Confidence 5798887 7899999999999988899999999999999999985 899999999999999999999999999854588
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----C
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----P 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g----~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~ 222 (298)
++.+|||+|||+|+++..+++..+ +.++|+++|+++++++.|++++...+.. .+...+++++.+|....+ .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-LLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-GGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-ccccCCEEEEECChHhcccccCc
Confidence 899999999999999999999875 5679999999999999999999876520 011368999999988765 4
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC-CceeEEEEEEcCCCCeEEEEeeeEEEeeccc
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 290 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~-~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~ 290 (298)
..++||+|+++.+.+++++.+.++|||||+++++++. ..|.+..+++ .++.|..+.+++|+|+||+.
T Consensus 159 ~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~ 226 (227)
T 2pbf_A 159 ELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDYTQVLYEITK-KNGKIIKDRLFDVCFVSLKK 226 (227)
T ss_dssp HHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEETTEEEEEEEEC-SCC-CEEEEEEEECCCBCCC
T ss_pred cCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEccCCceEEEEEEE-eCCeEEEEEeccEEEEeccC
Confidence 4478999999999999999999999999999999985 4577888888 67889999999999999985
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=231.46 Aligned_cols=223 Identities=52% Similarity=0.876 Sum_probs=193.0
Q ss_pred cccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccCCC
Q 022372 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKP 151 (298)
Q Consensus 72 ~~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~ 151 (298)
+|+.++ .++++++++|.+.|++.++.+.++|..++|+.|.|.. +|.+.+...+++.+++.|++.+.+++.+..++++
T Consensus 1 ~~~~~~-~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~--~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~ 77 (226)
T 1i1n_A 1 AWKSGG-ASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFDQLHE 77 (226)
T ss_dssp -CCCCC-SSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC--TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCT
T ss_pred CcCcCC-chHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCc--cCCCCccccCCCceecCHHHHHHHHHHHHhhCCC
Confidence 477766 6789999999999988899999999999999999875 8999999999999999999999999988655788
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
+.+|||+|||+|+.+..+++..++.++|+++|+++.+++.+++++...+.. .++.++++++.+|........++||+|+
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-ccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 999999999999999999998766679999999999999999998775420 0112589999999876655457899999
Q ss_pred ECCCCchhHHHHHhccccCcEEEEEECCC--ceeEEEEEEcCCCCeEEEEeeeEEEeecccchhhhcCC
Q 022372 232 VGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298 (298)
Q Consensus 232 ~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~--~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~~~~~ 298 (298)
++.+.+++++++.+.|||||+++++++.. .+.+..+.+..++.++.+.+++|+|+|++...+++.+|
T Consensus 157 ~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~~ 225 (226)
T 1i1n_A 157 VGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 225 (226)
T ss_dssp ECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCCCC
T ss_pred ECCchHHHHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEeccCCccccccc
Confidence 99999999999999999999999999864 35667788877889999999999999999987777766
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=222.18 Aligned_cols=201 Identities=37% Similarity=0.596 Sum_probs=181.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEE
Q 022372 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALD 157 (298)
Q Consensus 80 ~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLD 157 (298)
..+.|+++|+..| +.++++.++|..+||+.|+|+. ..+|.+.+++++.+.+++.|.+...+++.+. ++++.+|||
T Consensus 7 ~~~~~~~~l~~~g-v~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLd 83 (210)
T 3lbf_A 7 RVQALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLE 83 (210)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEE
Confidence 3567888999999 5899999999999999999984 6789999999999999999999999999987 788999999
Q ss_pred EcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc
Q 022372 158 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 158 iG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
+|||+|+.+..+++.. .+|+++|+++++++.|++++...+. .+++++.+|..+.++..++||+|+++.+.+
T Consensus 84 iG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 84 IGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQGWQARAPFDAIIVTAAPP 154 (210)
T ss_dssp ECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred EcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccCCccCCCccEEEEccchh
Confidence 9999999999999983 7999999999999999999987554 589999999988766667999999999999
Q ss_pred hhHHHHHhccccCcEEEEEECCCceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 238 EIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 238 ~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
++++++.++|||||++++++++..+.+..+.+. .+.+..+.+++++|+||+.+.+
T Consensus 155 ~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~~~~~ 209 (210)
T 3lbf_A 155 EIPTALMTQLDEGGILVLPVGEEHQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGEL 209 (210)
T ss_dssp SCCTHHHHTEEEEEEEEEEECSSSCEEEEEEEE-TTEEEEEEEEECCCCBCCCSSC
T ss_pred hhhHHHHHhcccCcEEEEEEcCCceEEEEEEEc-CCeEEEEEeccEEEEEccCccC
Confidence 999999999999999999999987888888885 5679999999999999998754
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=218.08 Aligned_cols=205 Identities=39% Similarity=0.608 Sum_probs=181.7
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
..+.+|+++|++.|.+.++++.++|..+||+.|+|+. ..+|.|.+.+++.+.++++|.+...+++.+. +.++.+||
T Consensus 19 ~~~~~l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vL 96 (235)
T 1jg1_A 19 EKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNIL 96 (235)
T ss_dssp HHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEEE
Confidence 5688999999977778999999999999999999886 6789999999999999999999999999886 88899999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+++..+++..+ .+|+++|+++.+++.|++++...+. .++++..+|....++...+||+|+++.+.
T Consensus 97 diG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 168 (235)
T 1jg1_A 97 EVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVIIVTAGA 168 (235)
T ss_dssp EECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred EEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCcccCCCCCCCccEEEECCcH
Confidence 999999999999999864 6899999999999999999987554 57999999985555554569999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchhh
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~ 294 (298)
+++++++.++|||||++++++++.. +.+..+.+ .++.++.+.+++++|+||+...++
T Consensus 169 ~~~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~f~p~~~~~~~ 227 (235)
T 1jg1_A 169 PKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRK-TKDGIKIKNHGGVAFVPLIGEYGW 227 (235)
T ss_dssp SSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEE-ETTEEEEEEEEEECCCBCBSTTSB
T ss_pred HHHHHHHHHhcCCCcEEEEEEecCCCccEEEEEEE-eCCeEEEEEeccEEEEEccCCCcc
Confidence 9999999999999999999998753 77777877 467899999999999999987653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=212.78 Aligned_cols=205 Identities=40% Similarity=0.684 Sum_probs=181.4
Q ss_pred chHHHHHHHH-HHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEE
Q 022372 79 NKNKAMVEHL-QHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHA 155 (298)
Q Consensus 79 ~~~~~lv~~L-~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~V 155 (298)
..|.+|+++| +..| +.++++.++|..+||+.|+|+. ..+|.+.+.+++.+.++++|.+...+++.+. +.++.+|
T Consensus 5 ~~~~~~~~~l~~~~~-~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v 81 (215)
T 2yxe_A 5 EQKKAVIEKLIREGY-IKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKV 81 (215)
T ss_dssp HHHHHHHHHHHHHTS-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCEE
T ss_pred HHHHHHHHHhHHhcC-CCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCEE
Confidence 3578899999 7777 6899999999999999999876 6789999999999999999999999999886 8889999
Q ss_pred EEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCC
Q 022372 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 235 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~ 235 (298)
||+|||+|+.+..+++..++..+|+++|+++.+++.|++++...+. .++++..+|....++..++||+|+++.+
T Consensus 82 LdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (215)
T 2yxe_A 82 LEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVIVGDGTLGYEPLAPYDRIYTTAA 155 (215)
T ss_dssp EEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCCCCCeeEEEECCc
Confidence 9999999999999999976667999999999999999999887654 5799999998765554578999999999
Q ss_pred CchhHHHHHhccccCcEEEEEECCCceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 236 APEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 236 ~~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
++++++++.+.|||||++++++++..+.+..+.+. ++.|..+.++++.|+|++++.+
T Consensus 156 ~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~ 212 (215)
T 2yxe_A 156 GPKIPEPLIRQLKDGGKLLMPVGRYLQRLVLAEKR-GDEIIIKDCGPVAFVPLVGKEG 212 (215)
T ss_dssp BSSCCHHHHHTEEEEEEEEEEESSSSEEEEEEEEE-TTEEEEEEEEEECCCBCBSTTS
T ss_pred hHHHHHHHHHHcCCCcEEEEEECCCCcEEEEEEEe-CCEEEEEEeccEEEEecccccc
Confidence 99999999999999999999998766777778776 4579999999999999988754
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=205.57 Aligned_cols=202 Identities=28% Similarity=0.451 Sum_probs=175.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCC---CCCCCCCc-cccCC---CccChHHHHHHHHHHHHccCCCCC
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGT---PPYVDSPM-AIGYN---ATISAPHMHATCLQLLEENLKPGM 153 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~---~aY~d~~~-~~g~~---~~is~p~~~~~~l~~L~~~l~~g~ 153 (298)
++.|+++|+..| +.+ ++.++|..+||+.|+|+.. .+|.+.+. +++.+ +.+++|.+...+++.+. ++++.
T Consensus 2 ~~~~~~~l~~~g-i~~-~v~~a~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~ 77 (317)
T 1dl5_A 2 REKLFWILKKYG-VSD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM 77 (317)
T ss_dssp HHHHHHHHHHTT-CCH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTC
T ss_pred hHHHHHHHHHcC-ChH-HHHHHHHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcC
Confidence 568899999999 688 9999999999999999873 47888888 89988 88899999999999886 88999
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEC
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVG 233 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~ 233 (298)
+|||+|||+|+++..+++..+..++|+++|+++++++.|++++...+. .+++++.+|..+..+..++||+|+++
T Consensus 78 ~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYDVIFVT 151 (317)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhccccCCCeEEEEEc
Confidence 999999999999999999864347899999999999999999987654 57999999998765555789999999
Q ss_pred CCCchhHHHHHhccccCcEEEEEECCC---ceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 234 AAAPEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 234 ~~~~~l~~~l~~~LkpGG~Lvi~v~~~---~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
.+.+++.+.+.+.|||||+++++++.. .+.+..+.+.. +.+..+.++++.|+|++....
T Consensus 152 ~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~ 213 (317)
T 1dl5_A 152 VGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETRFITAGGNLG 213 (317)
T ss_dssp SBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEET-TEEEEEEEEECCCCBCCGGGS
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEeC-CcEEEEEeccEEEEEccCccc
Confidence 999999999999999999999998765 36666676654 468899999999999987654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=188.22 Aligned_cols=193 Identities=27% Similarity=0.391 Sum_probs=164.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCC--CCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYV--DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~--d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
|..|+....+ ++++.+||..+||+.|+|+. ..+|. |.+.+++.++.++.|.+...+++.+. +.++.+||
T Consensus 3 r~~~~~~~~~-----~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vL 75 (231)
T 1vbf_A 3 EKEEILRKIK-----TQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVL 75 (231)
T ss_dssp HHHHHHHHCC-----CHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEE
T ss_pred HHHHHHHHhC-----CHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEE
Confidence 4455554433 89999999999999999875 67899 99999999999999999999999886 78899999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++.. .+|+++|+++.+++.|++++... ++++++.+|....++..++||+|+++.++
T Consensus 76 diG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~--------~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 76 EIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY--------NNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (231)
T ss_dssp EECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC--------SSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred EEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhc--------CCeEEEECCcccccccCCCccEEEECCcH
Confidence 99999999999999985 69999999999999999987542 27999999988755445789999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCCc-eeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~~-q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
+++++++.+.|||||++++.+++.. +.+..+.+. .+.+..+.+.++.|+|+....
T Consensus 145 ~~~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 200 (231)
T 1vbf_A 145 PTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKK-GNSPSLENLGEVMFGRIGGLY 200 (231)
T ss_dssp SSCCHHHHHTEEEEEEEEEEECSSSSEEEEEEECC-TTSCEEEEEEEECCCBCCSTT
T ss_pred HHHHHHHHHHcCCCcEEEEEEcCCCccEEEEEEEc-CCeeEEEEeccEEEEEcCCcc
Confidence 9999999999999999999998754 455556553 556888889999999998664
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=146.46 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=122.3
Q ss_pred HHHHHHhCCCCCCCCCC-------CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHH
Q 022372 99 VSEVMETIDRACFVPDG-------TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFAL 171 (298)
Q Consensus 99 v~~a~~~v~R~~f~p~~-------~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~ 171 (298)
..+++...+++.|.++. ...|.+....+..+..+..|.....+++.+. +.++.+|||+|||+|+++..+++
T Consensus 48 ~~~~ig~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~ 125 (336)
T 2b25_A 48 FGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSK 125 (336)
T ss_dssp HHHHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHHcCCCCCceEEeCCCcEEEecCCCHHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHH
Confidence 34555666777776554 2334455556777888899998898999886 88999999999999999999999
Q ss_pred HcCCCcEEEEEeCCHHHHHHHHHHHHHhc----cCCccC--CCCEEEEEcCCCCCC--CCCCCccEEEECCCCch-hHHH
Q 022372 172 MVGPQGRAVGVEHIPELVVSSIQNIEKSA----AAPLLK--EGSLSVHVGDGRKGW--PEFAPYDAIHVGAAAPE-IPQA 242 (298)
Q Consensus 172 ~~g~~~~V~giD~s~~~l~~A~~~~~~~~----~~~~l~--~~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~~~-l~~~ 242 (298)
.+++.++|+++|+++.+++.|++++...+ +. .+. ..+++++.+|..+.. .+.++||+|+++...+. +.++
T Consensus 126 ~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~ 204 (336)
T 2b25_A 126 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS-HVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPV 204 (336)
T ss_dssp HHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT-CSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHH
T ss_pred HhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccc-cccccCCceEEEECChHHcccccCCCCeeEEEECCCCHHHHHHH
Confidence 87777899999999999999999987643 10 010 158999999998753 23357999999877654 5799
Q ss_pred HHhccccCcEEEEEECCC
Q 022372 243 LIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 243 l~~~LkpGG~Lvi~v~~~ 260 (298)
+.+.|||||++++..+..
T Consensus 205 ~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 205 FYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp HGGGEEEEEEEEEEESSH
T ss_pred HHHhcCCCcEEEEEeCCH
Confidence 999999999999988753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=130.41 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
+...+.+.+++.+. ++++.+|||+|||+|..+..+++. ++..+|+++|+++++++.|++++...+. +++++
T Consensus 24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~ 94 (204)
T 3e05_A 24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTL 94 (204)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEE
T ss_pred ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEE
Confidence 55666677788876 888999999999999999999998 4668999999999999999999988654 68999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCC---chhHHHHHhccccCcEEEEEECC
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.+|..+.....++||+|+++.+. ..+.+++.+.|||||++++....
T Consensus 95 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 95 VEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp EECCTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred EeCChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999997766555789999999885 45668899999999999997543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=131.14 Aligned_cols=120 Identities=23% Similarity=0.385 Sum_probs=101.4
Q ss_pred CccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 130 ~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
..++.+.+...+++.+. +.++.+|||+|||+|.++..+++. + .+|+++|+++++++.|+++++..+.. .+
T Consensus 36 ~~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~-~--~~v~~vD~s~~~~~~a~~~~~~~g~~-----~~ 105 (204)
T 3njr_A 36 GQITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA-G--GRAITIEPRADRIENIQKNIDTYGLS-----PR 105 (204)
T ss_dssp SCCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTCT-----TT
T ss_pred CCCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCC-----CC
Confidence 35566677777888886 888999999999999999999997 3 79999999999999999999886652 38
Q ss_pred EEEEEcCCCCCCCCCCCccEEEECCCCch-hHHHHHhccccCcEEEEEECC
Q 022372 210 LSVHVGDGRKGWPEFAPYDAIHVGAAAPE-IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 210 v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++++.+|..+..+...+||+|+++..... +.+++.+.|||||++++....
T Consensus 106 v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 106 MRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp EEEEESCTTGGGTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred EEEEeCchhhhcccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999875555468999999986643 789999999999999997765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=139.38 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=89.8
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
..+..++++|.+|||+|||+|..+..+++.++ ++.+|+|+|+++.|++.|++++...+.. .+++++++|..+..
T Consensus 62 ~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~-----~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 62 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIA 136 (261)
T ss_dssp HHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESCTTTCC
T ss_pred HHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC-----ceEEEeeccccccc
Confidence 33444589999999999999999999999864 3459999999999999999998876543 68999999998754
Q ss_pred CCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
. ++||+|+++.++++ +.+++++.|||||++++.-
T Consensus 137 ~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 137 I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp C--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 3 56999999988754 3477899999999999853
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=126.65 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=99.1
Q ss_pred ccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 131 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
.++...+...+++.+. +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+.. .++
T Consensus 7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~ 78 (178)
T 3hm2_A 7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVS-----DRI 78 (178)
T ss_dssp CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCT-----TSE
T ss_pred cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCC-----CCE
Confidence 4456667777888876 7888999999999999999999885 5589999999999999999999876542 378
Q ss_pred EEEEcCCCCCCCCC-CCccEEEECCCCch--hHHHHHhccccCcEEEEEECC
Q 022372 211 SVHVGDGRKGWPEF-APYDAIHVGAAAPE--IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 211 ~~~~gD~~~~~~~~-~~fD~Ii~~~~~~~--l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++.+|..+.++.. ++||+|+++...++ +.+++.+.|||||++++....
T Consensus 79 -~~~~d~~~~~~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 79 -AVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp -EEECCTTGGGGGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECS
T ss_pred -EEecchHhhhhccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeec
Confidence 8888886654443 68999999998875 889999999999999997653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=132.34 Aligned_cols=115 Identities=23% Similarity=0.266 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.+.....+++.+. ++++.+|||+|||+|..+..+++..+ .+|+|+|+++.+++.|+++....++. ++++++
T Consensus 21 ~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~v~~~ 91 (256)
T 1nkv_A 21 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVS-----ERVHFI 91 (256)
T ss_dssp CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEE
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCC-----cceEEE
Confidence 3455667777775 78899999999999999999999863 58999999999999999999876653 589999
Q ss_pred EcCCCCCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEEC
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+|..+..+ .++||+|++..+++++ .+++.+.|||||++++..+
T Consensus 92 ~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 92 HNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp ESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 999987655 5789999998776544 6889999999999999653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=127.94 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=88.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
++++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|..+.. ...++|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-----DRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-----GGEEEECSCGGGGGGTCCSCE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CCeEEEECCHHHHhhhccCCc
Confidence 788999999999999999999998766679999999999999999999886543 58999999976542 233789
Q ss_pred cEEEECCCC---------------chhHHHHHhccccCcEEEEEE
Q 022372 228 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 228 D~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
|+|+++.+. ..+.+++.+.|||||++++..
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 999998755 246788999999999999876
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-15 Score=129.77 Aligned_cols=119 Identities=25% Similarity=0.376 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..|.....++..+. +.++.+|||+|||+|.++..+++.+++..+|+++|+++++++.|+++++..+.. +++++
T Consensus 77 ~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~v~~ 149 (255)
T 3mb5_A 77 VHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-----DRVTI 149 (255)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-----TTEEE
T ss_pred ccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-----CceEE
Confidence 44555667777776 889999999999999999999998767789999999999999999999887653 45999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECC
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.+|..+..++ ++||+|+++.+.. .+.+++.+.|||||++++..+.
T Consensus 150 ~~~d~~~~~~~-~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 150 KLKDIYEGIEE-ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp ECSCGGGCCCC-CSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred EECchhhccCC-CCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 99999876544 6899999988765 4789999999999999997764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-16 Score=147.28 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC-CCC--------------CCCCCccccCCCccChHHHHHHHHHHH
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG-TPP--------------YVDSPMAIGYNATISAPHMHATCLQLL 145 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~-~~a--------------Y~d~~~~~g~~~~is~p~~~~~~l~~L 145 (298)
...++++|++.|+ . .+.+||..|||+.+ ..- ..+ |.+. -+.++|.++ |.+.+.+++.+
T Consensus 166 ~~~~~~~Lr~~~I-~--~vl~a~~~vPr~~~-e~il~~aY~~~l~P~~~~l~~Y~~~-s~~~yGet~--p~~v~~ml~~l 238 (433)
T 1u2z_A 166 YNKMIREIPRQRI-I--DHLETIDKIPRSFI-HDFLHIVYTRSIHPQANKLKHYKAF-SNYVYGELL--PNFLSDVYQQC 238 (433)
T ss_dssp HHHHHTTSCHHHH-H--HHHTTCCEEEHHHH-HHHHHHHHHHHTGGGGGGGCSCCSS-GGGCCCCBC--HHHHHHHHHHT
T ss_pred HHHHHHHHhhccH-H--HHHHHHHhCCHHHH-HHHHHHHHHhhccccHHHHHHhhhc-ccccccccc--HHHHHHHHHhc
Confidence 4556667766774 3 37888888888763 110 112 2221 135666665 78888999888
Q ss_pred HccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHH-------HHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 146 EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS-------IQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 146 ~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A-------~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
. ++++.+|||+|||+|+++..+++..+ ..+|+|+|+++.+++.| ++++...++ ...+++++++|..
T Consensus 239 ~--l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl----~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 239 Q--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGM----RLNNVEFSLKKSF 311 (433)
T ss_dssp T--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB----CCCCEEEEESSCS
T ss_pred C--CCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC----CCCceEEEEcCcc
Confidence 6 88999999999999999999999864 35899999999999999 777776542 1368999998765
Q ss_pred CC-CC---CCCCccEEEECCCC--c---hhHHHHHhccccCcEEEEE
Q 022372 219 KG-WP---EFAPYDAIHVGAAA--P---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~-~~---~~~~fD~Ii~~~~~--~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
.. ++ ..++||+|+++..+ + ...+++.++|||||+++++
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 32 11 13689999997544 2 2336889999999999985
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=129.91 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=105.9
Q ss_pred cCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-c-cCCc
Q 022372 127 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-A-AAPL 204 (298)
Q Consensus 127 g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~-~~~~ 204 (298)
..+..+..|.....+++.+. +.++.+|||+|||+|.++..+++.+++..+|+++|+++++++.|++++... + +.
T Consensus 77 ~~~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-- 152 (280)
T 1i9g_A 77 PRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-- 152 (280)
T ss_dssp CSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC--
T ss_pred cccceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC--
Confidence 44455566777888888886 889999999999999999999997667789999999999999999998875 3 22
Q ss_pred cCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECC
Q 022372 205 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 205 l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++++.+|..+...+.++||+|+++.... .+.+++.+.|||||++++.++.
T Consensus 153 ---~~v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 153 ---DNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp ---TTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ---CcEEEEECchHhcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 689999999877654457899999987654 6889999999999999998875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=130.13 Aligned_cols=102 Identities=24% Similarity=0.386 Sum_probs=87.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~~ 224 (298)
.++||++|||+|||+|+++..+|+.+|++++|+|+|+++++++.++++..+. +|+..+.+|.... ....
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--------~ni~~V~~d~~~p~~~~~~~ 145 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--------RNIFPILGDARFPEKYRHLV 145 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--------TTEEEEESCTTCGGGGTTTC
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--------cCeeEEEEeccCcccccccc
Confidence 4799999999999999999999999999999999999999999998876542 6899999988752 2233
Q ss_pred CCccEEEECCCCch----hHHHHHhccccCcEEEEEE
Q 022372 225 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v 257 (298)
+++|+|+++...+. +..++.+.|||||++++.+
T Consensus 146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 146 EGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 68999999887764 4577889999999999975
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=132.60 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=86.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTAC-FALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~-La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++++|||||||+|.++.. +++. ++++|+|+|+++++++.|++++++.++ .+++++++|+.+. + .++
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~l-~-d~~ 188 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHV--YGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETVI-D-GLE 188 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHT--TCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGGG-G-GCC
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhhC-C-CCC
Confidence 489999999999999877654 4553 347999999999999999999988654 6899999999874 3 478
Q ss_pred ccEEEECCCCc---hhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||+|++.+..+ .+++++.++|||||++++.....
T Consensus 189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 189 FDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp CSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred cCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 99999987764 57899999999999999976543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-15 Score=123.85 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=84.9
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG- 220 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~- 220 (298)
...+...++++.+|||+|||+|+.+..+++. + .+|+|+|+++++++.|++++...+. ++++++.++....
T Consensus 13 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~~~~~l~ 83 (185)
T 3mti_A 13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGL-S--KKVYAFDVQEQALGKTSQRLSDLGI------ENTELILDGHENLD 83 (185)
T ss_dssp HHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-S--SEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEESCGGGGG
T ss_pred HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCcHHHHH
Confidence 3444445788999999999999999999987 2 7999999999999999999988654 6899999666542
Q ss_pred -CCCCCCccEEEECCC-Cc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 221 -WPEFAPYDAIHVGAA-AP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~-~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+. .++||+|+++.. ++ ...+++.+.|||||++++.+..
T Consensus 84 ~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 84 HYV-REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp GTC-CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred hhc-cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 23 478999998832 22 2337888999999999997643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=129.33 Aligned_cols=122 Identities=28% Similarity=0.403 Sum_probs=102.1
Q ss_pred ccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCC
Q 022372 131 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGS 209 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~ 209 (298)
....|.....+++.+. +.++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|++++... +. ++
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~------~~ 149 (258)
T 2pwy_A 78 TPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV------EN 149 (258)
T ss_dssp CCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC------CC
T ss_pred ccccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC------CC
Confidence 3444555677777776 889999999999999999999998766689999999999999999998876 52 68
Q ss_pred EEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCC
Q 022372 210 LSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 210 v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+++..+|..+...+.++||+|+++.... .+.+++.+.|||||++++..+..
T Consensus 150 v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 150 VRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EEEEESCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred EEEEECchhhcCCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 9999999887633346899999987654 78899999999999999988764
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=126.53 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=95.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. +.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++...+. +++++..+|..
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~ 98 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEEN 98 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTT
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccc
Confidence 45667665 78889999999999999999999976767999999999999999999987654 58999999998
Q ss_pred CCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
......++||+|++..++++ +.+++.+.|||||++++..
T Consensus 99 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp BCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 76555578999999988754 4578899999999999964
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=127.67 Aligned_cols=115 Identities=21% Similarity=0.218 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.....++..+. .++++.+|||+|||+|..+..+++.. + .+|+|+|+++.+++.|++++...+.. ++++++.+
T Consensus 32 ~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~ 103 (257)
T 3f4k_A 32 EATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCA-----DRVKGITG 103 (257)
T ss_dssp HHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEEC
T ss_pred HHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEEC
Confidence 34555555553 36788999999999999999999985 3 49999999999999999999887653 56999999
Q ss_pred CCCCCCCCCCCccEEEECCCCch-----hHHHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAPE-----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|......+.++||+|++..++++ +.+++.+.|||||++++...
T Consensus 104 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 104 SMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp CTTSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ChhhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99775545579999999988765 45788999999999999763
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=128.63 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|.....+...+. ..++.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.|++++...++. ++++++
T Consensus 56 ~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~ 127 (232)
T 3ntv_A 56 DRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE-----NQVRII 127 (232)
T ss_dssp CHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTT-CTTCEEEEEECCHHHHHHHHHHHHHTTCT-----TTEEEE
T ss_pred CHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEE
Confidence 4555555555554 567789999999999999999985 35689999999999999999999887653 589999
Q ss_pred EcCCCCCCC-C-CCCccEEEECCCCch---hHHHHHhccccCcEEEE
Q 022372 214 VGDGRKGWP-E-FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 214 ~gD~~~~~~-~-~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
.+|+.+..+ . .++||+|+++..... +.+.+.+.|||||++++
T Consensus 128 ~~d~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 128 EGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp ESCGGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCHHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999977544 1 378999999987754 45788899999999987
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=128.93 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=93.8
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. .++++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.|++++...+.. ++++++.+|.
T Consensus 34 ~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~ 105 (267)
T 3kkz_A 34 TLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQ-----NRVTGIVGSM 105 (267)
T ss_dssp HHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCT
T ss_pred HHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cCcEEEEcCh
Confidence 444555553 4678899999999999999999987 3369999999999999999999887654 5799999999
Q ss_pred CCCCCCCCCccEEEECCCCchh-----HHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI-----PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l-----~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+...+.++||+|++..+++++ .+++.+.|||||++++...
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8765555799999999987653 5788999999999999653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=129.44 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=91.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+. +++.++.+|.
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~ 94 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA 94 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecH
Confidence 455667775 6788999999999999999999875 4999999999999999999877553 5899999999
Q ss_pred CCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
.....+.++||+|++..++++ +.+++.+.|||||++++..
T Consensus 95 ~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 95 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp -CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 875555579999999988754 4578999999999999853
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=123.47 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.+...+++.+. .+++ +|||+|||+|..+..+++. +..+++++|+++.+++.|++++...+.. ++++++.+
T Consensus 31 ~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~ 100 (219)
T 3dlc_A 31 IIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLN-----DRIQIVQG 100 (219)
T ss_dssp HHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEEC
T ss_pred HHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcccc-----CceEEEEc
Confidence 44555666664 5555 9999999999999999997 3369999999999999999999886653 58999999
Q ss_pred CCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
|..+...+.++||+|++..++++ +.+++.+.|||||++++..
T Consensus 101 d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 101 DVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp BTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence 99875555579999999988754 4578899999999999964
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=127.72 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=92.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. +.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++....+.. ++++++.+|.
T Consensus 50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 120 (273)
T 3bus_A 50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLA-----NRVTFSYADA 120 (273)
T ss_dssp HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCT
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCCC-----cceEEEECcc
Confidence 344455554 67889999999999999999998753 69999999999999999998876653 5799999999
Q ss_pred CCCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v 257 (298)
.+...+.++||+|++..+++++ .+++.+.|||||++++..
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 8765555789999999887654 478899999999999865
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=127.35 Aligned_cols=114 Identities=20% Similarity=0.254 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
+++.....+++.+. ++++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++...+. +++++
T Consensus 5 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~ 73 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV------ENVRF 73 (239)
T ss_dssp -CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC------CSEEE
T ss_pred ccCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CCeEE
Confidence 34444667778887 8899999999999999999999874 4999999999999999999887654 58999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
+.+|........++||+|++..++++ +.+++.+.|||||++++..
T Consensus 74 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 74 QQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp EECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99998775555578999999988754 4578899999999999854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=129.79 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=91.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ++++.+|||+|||+|.++..+++..+ .+|+|+|+++++++.|++++...++. .+++++.+|..
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 132 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSP-----RRKEVRIQGWE 132 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCS-----SCEEEEECCGG
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECCHH
Confidence 34445443 67899999999999999999999864 68999999999999999999886653 58999999987
Q ss_pred CCCCCCCCccEEEECCCCchh---------------HHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI---------------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l---------------~~~l~~~LkpGG~Lvi~v~ 258 (298)
+. .++||+|++..+++++ .+++.+.|||||++++...
T Consensus 133 ~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 133 EF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred Hc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 65 4789999999887666 4788999999999998653
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=124.42 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.....+++.+. ..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++...+... ....+++++.+
T Consensus 16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~ 91 (217)
T 3jwh_A 16 QRMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPR-NQWERLQLIQG 91 (217)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCH-HHHTTEEEEEC
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCc-ccCcceEEEeC
Confidence 34555666665 5678899999999999999999974 55799999999999999999986544310 00138999999
Q ss_pred CCCCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~ 258 (298)
|........++||+|++..+++++ .+++.+.|||||++++...
T Consensus 92 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 92 ALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 986544444689999999987643 3678899999997776443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=129.15 Aligned_cols=115 Identities=21% Similarity=0.125 Sum_probs=94.8
Q ss_pred HHHHHHHHHH--ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 137 MHATCLQLLE--ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 137 ~~~~~l~~L~--~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
....+++.+. ..+.++.+|||+|||+|..+..+++..+ .+|+|+|+++.+++.|+++....+.. ++++++.
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~~~~~ 138 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLA-----DNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCT-----TTEEEEE
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCC-----cceEEEE
Confidence 3455666661 0267889999999999999999999863 59999999999999999998876653 6899999
Q ss_pred cCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|......+.++||+|++..++++ +.+++.+.|||||++++...
T Consensus 139 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 139 GSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999876555579999999988755 45889999999999999653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-15 Score=127.91 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=82.7
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC------CccCCCCEEEEE
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLKEGSLSVHV 214 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~------~~l~~~~v~~~~ 214 (298)
.++.+. ++++.+|||+|||+|..+..|++. + .+|+|+|+|+.+++.|+++....... ......++++++
T Consensus 14 ~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 14 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHC--CCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHhcc--cCCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 345554 678899999999999999999998 3 59999999999999999875321000 000125899999
Q ss_pred cCCCCCCCCC-CCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 215 GDGRKGWPEF-APYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 215 gD~~~~~~~~-~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
+|..+..+.. ++||+|++..++.++ .+++.+.|||||++++
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9998765443 689999988776443 3678999999998443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=127.69 Aligned_cols=100 Identities=10% Similarity=0.103 Sum_probs=84.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~ 229 (298)
+.+|||+|||+|+.+..+++.++++++|+++|+++++++.|+++++..+.. .++++++.+|+.+..+. .++||+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~~i~~~~gda~~~l~~~~~~~fD~ 132 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS----PSRVRFLLSRPLDVMSRLANDSYQL 132 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECSCHHHHGGGSCTTCEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cCcEEEEEcCHHHHHHHhcCCCcCe
Confidence 459999999999999999998766789999999999999999999886641 14899999998764322 378999
Q ss_pred EEECCCCch---hHHHHHhccccCcEEEE
Q 022372 230 IHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
|+++..... +.+.+.+.|||||++++
T Consensus 133 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 133 VFGQVSPMDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp EEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999988754 45788999999999997
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=123.69 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.....+++.+. ..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++...++.. ....+++++.+
T Consensus 16 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~ 91 (219)
T 3jwg_A 16 QRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPE-MQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCH-HHHTTEEEEEC
T ss_pred HHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhcccc-ccCcceEEEeC
Confidence 34555666665 5677899999999999999999874 55799999999999999999987654310 00128999999
Q ss_pred CCCCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
|........++||+|++..+++++ .+++.+.|||||+++...
T Consensus 92 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp CSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 986554445789999999887554 356889999999666543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=127.91 Aligned_cols=110 Identities=19% Similarity=0.293 Sum_probs=91.3
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
+.+...+++|.+|||||||+|+++..+++. ++..+|+++|+++.+++.|++|+..+++. ++++++.+|+...++
T Consensus 7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~-----~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 7 ELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLK-----EKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHTTSCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT-----TTEEEEECSGGGGCC
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEECchhhhcc
Confidence 444456788999999999999999999997 56679999999999999999999998764 579999999987766
Q ss_pred CCCCccEEEECCC----CchhHHHHHhccccCcEEEEEEC
Q 022372 223 EFAPYDAIHVGAA----APEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 223 ~~~~fD~Ii~~~~----~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
..++||+|++... ..++.+...+.|+++|++++.-.
T Consensus 81 ~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 81 ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp GGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred cCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5347999886553 24566778889999999999543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-15 Score=129.55 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=89.0
Q ss_pred CCccCh-HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCc
Q 022372 129 NATISA-PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204 (298)
Q Consensus 129 ~~~is~-p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~---~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~ 204 (298)
+..+.+ |.....+.+.+. ..++.+|||||||+|+.+..+++. +++.++|+++|+++++++.|+. ..
T Consensus 60 ~~~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~-- 129 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DM-- 129 (236)
T ss_dssp TEECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GC--
T ss_pred cccccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cC--
Confidence 445566 887777777776 345689999999999999999997 4566899999999999988861 11
Q ss_pred cCCCCEEEEEcCCCCC--C--CCCCCccEEEECCCCch---hHHHHHh-ccccCcEEEE
Q 022372 205 LKEGSLSVHVGDGRKG--W--PEFAPYDAIHVGAAAPE---IPQALID-QLKPGGRMVI 255 (298)
Q Consensus 205 l~~~~v~~~~gD~~~~--~--~~~~~fD~Ii~~~~~~~---l~~~l~~-~LkpGG~Lvi 255 (298)
++++++++|..+. + ....+||+|+++....+ +..++.+ +|||||++++
T Consensus 130 ---~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~ 185 (236)
T 2bm8_A 130 ---ENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFII 185 (236)
T ss_dssp ---TTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEE
T ss_pred ---CceEEEECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEE
Confidence 6899999999874 2 23247999999887433 4466775 9999999998
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=121.94 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..|.....++..+. +.++.+|||+|||+|.++..+++. + .+|+++|+++++++.|+++....+.. +++++
T Consensus 75 ~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~ 144 (248)
T 2yvl_A 75 IYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV-A--GEVWTFEAVEEFYKTAQKNLKKFNLG-----KNVKF 144 (248)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH-S--SEEEEECSCHHHHHHHHHHHHHTTCC-----TTEEE
T ss_pred ccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh-C--CEEEEEecCHHHHHHHHHHHHHcCCC-----CcEEE
Confidence 33455666777765 788999999999999999999998 3 79999999999999999998876543 58999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCC
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+|..+.....++||+|+++.+.. ...+++.+.|||||++++..+..
T Consensus 145 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 145 FNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp ECSCTTTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred EEcChhhcccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9999987652446899999987765 78899999999999999988853
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=125.07 Aligned_cols=114 Identities=20% Similarity=0.279 Sum_probs=87.7
Q ss_pred HHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
..+.++..+. ..+++|.+|||+|||+|+.+..+++.+++.++|+++|+++.+++...+...+. .|+.++.+
T Consensus 61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------~nv~~i~~ 132 (232)
T 3id6_C 61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------PNIFPLLA 132 (232)
T ss_dssp HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------TTEEEEEC
T ss_pred HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCeEEEEc
Confidence 3455555553 24789999999999999999999999888899999999999876655444331 58999999
Q ss_pred CCCCCCC---CCCCccEEEECCCCchhH----HHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWP---EFAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~---~~~~fD~Ii~~~~~~~l~----~~l~~~LkpGG~Lvi~v~ 258 (298)
|+..... ..++||+|+++.+.+... ..+.+.|||||++++.+.
T Consensus 133 Da~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 133 DARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 9876321 135899999998875433 345569999999999864
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-14 Score=121.72 Aligned_cols=102 Identities=22% Similarity=0.353 Sum_probs=85.1
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCC
Q 022372 148 NLKPGMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~ 224 (298)
.++++.+|||+||| +|.++..+++.. ..+|+|+|+++.+++.|++++..++. +++++.+|... ..+ .
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~~~~-~ 121 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-------NVRLVKSNGGIIKGVV-E 121 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-------CCEEEECSSCSSTTTC-C
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEEeCCchhhhhcc-c
Confidence 37889999999999 999999999985 37999999999999999999987542 78999999642 333 3
Q ss_pred CCccEEEECCCC-------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAAA-------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~-------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++||+|+++.+. ..+.+.+.+.|||||++++.++.
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 789999999765 34567888999999999996654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-14 Score=125.95 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...++.+|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++.+.+.. ++++++.+|+
T Consensus 51 ~~~~l~~l~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-----~~v~~~~~d~ 124 (248)
T 3tfw_A 51 QGQFLALLV-RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-----QRVTLREGPA 124 (248)
T ss_dssp HHHHHHHHH-HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHH-hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 344455542 2556789999999999999999998755689999999999999999999887653 5899999998
Q ss_pred CCCC---CCCCCccEEEECCCCch---hHHHHHhccccCcEEEEE
Q 022372 218 RKGW---PEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~---~~~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~ 256 (298)
.+.. ...++||+|+++..... +.+.+.+.|||||++++.
T Consensus 125 ~~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 125 LQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp HHHHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 6522 22358999999988754 457889999999999873
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-14 Score=120.85 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~f 227 (298)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++...+. .+++++.+|..... ...++|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~ 112 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEI 112 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCC
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCCCCC
Confidence 467899999999999999999985 567999999999999999999987654 68999999998633 334689
Q ss_pred cEEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++.+.+ .+.+.+.+.|||||++++....
T Consensus 113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999997753 4778899999999999998755
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=125.90 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-----
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE----- 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~----- 223 (298)
..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|..+..+.
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-----DKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEESCHHHHGGGTTTTS
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CceEEEECCHHHHHHHHHHhc
Confidence 456789999999999999999997655689999999999999999999887754 5799999997542211
Q ss_pred -CCCccEEEECCCCchhHH------HHHhccccCcEEEEE
Q 022372 224 -FAPYDAIHVGAAAPEIPQ------ALIDQLKPGGRMVIP 256 (298)
Q Consensus 224 -~~~fD~Ii~~~~~~~l~~------~l~~~LkpGG~Lvi~ 256 (298)
.++||+|+++...++... .+ +.|||||++++.
T Consensus 131 ~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred CCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEe
Confidence 158999999998766542 23 799999999973
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=122.50 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~~~ 225 (298)
+++|.+|||+|||+|+.+..+++.++ .++|+|+|+++.+++.+.++.+.. .++.++.+|.... .+..+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--------~~v~~~~~d~~~~~~~~~~~~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASKPWKYSGIVE 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTCGGGTTTTCC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--------CCeEEEEcCCCCchhhccccc
Confidence 67889999999999999999999875 579999999999887776655431 5788899988763 22237
Q ss_pred CccEEEECCCCch----hHHHHHhccccCcEEEEEE
Q 022372 226 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 226 ~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v 257 (298)
+||+|+++...+. +.+++.+.|||||++++.+
T Consensus 126 ~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999865432 2578899999999999986
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=126.73 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=95.8
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+.+|.....+...+. ..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.|++++...+.. ++++
T Consensus 37 ~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~ 108 (233)
T 2gpy_A 37 IMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLE-----SRIE 108 (233)
T ss_dssp CCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCT-----TTEE
T ss_pred CcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEE
Confidence 455666666666665 5678899999999999999999986 4579999999999999999999886653 5799
Q ss_pred EEEcCCCCCCCC---CCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 212 VHVGDGRKGWPE---FAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 212 ~~~gD~~~~~~~---~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
++.+|..+..+. .++||+|+++.+.+ .+.+.+.+.|||||++++.
T Consensus 109 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 109 LLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EECSCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 999998764321 36899999998874 4568899999999999985
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=128.53 Aligned_cols=119 Identities=17% Similarity=0.254 Sum_probs=94.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..|.....+...+. ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+.. ++++
T Consensus 43 ~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----~~v~ 115 (239)
T 2hnk_A 43 QISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-----NKIF 115 (239)
T ss_dssp SCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-----GGEE
T ss_pred ccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CCEE
Confidence 455665555555554 567889999999999999999998754679999999999999999999876653 4699
Q ss_pred EEEcCCCCCCC---------------C-C-CCccEEEECCCCchh---HHHHHhccccCcEEEEEE
Q 022372 212 VHVGDGRKGWP---------------E-F-APYDAIHVGAAAPEI---PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 212 ~~~gD~~~~~~---------------~-~-~~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~v 257 (298)
++.+|..+..+ + . ++||+|+++...+.+ .+.+.+.|||||++++..
T Consensus 116 ~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 116 LKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp EEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99998764321 1 2 689999999887644 488899999999999864
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-15 Score=132.23 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=82.6
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
+.+......+.+|||||||+|..+..|++.. .+|+|+|+|+.+++.|+++ ++++++++|+.+...
T Consensus 31 ~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~------------~~v~~~~~~~e~~~~ 95 (257)
T 4hg2_A 31 RWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRH------------PRVTYAVAPAEDTGL 95 (257)
T ss_dssp HHHHHHSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCC------------TTEEEEECCTTCCCC
T ss_pred HHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhc------------CCceeehhhhhhhcc
Confidence 3333335566899999999999999999874 6899999999999877531 689999999988766
Q ss_pred CCCCccEEEECCCCch-----hHHHHHhccccCcEEEEEE
Q 022372 223 EFAPYDAIHVGAAAPE-----IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi~v 257 (298)
+.++||+|++..++++ ..+++.++|||||+|++..
T Consensus 96 ~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 96 PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence 6689999999998864 4478999999999998854
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=125.70 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=90.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...++.+|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++...+.. ++++++.+|.
T Consensus 46 ~~~~l~~l~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~ 119 (223)
T 3duw_A 46 QGKFLQLLV-QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-----DRVEVRTGLA 119 (223)
T ss_dssp HHHHHHHHH-HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHH-HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 444455543 2556789999999999999999998754689999999999999999999887653 5699999998
Q ss_pred CCCCCC-----CCCccEEEECCCCch---hHHHHHhccccCcEEEEE
Q 022372 218 RKGWPE-----FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~-----~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~ 256 (298)
.+.++. .++||+|+++..... +.+.+.+.|||||++++.
T Consensus 120 ~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 120 LDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp HHHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence 653221 157999999987654 457889999999988873
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=126.83 Aligned_cols=110 Identities=23% Similarity=0.332 Sum_probs=91.2
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
++.+...+++|.+|||||||+|+++..+++. ++..+|+++|+++.+++.|++|+..+++. ++++++.+|+.+.+
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~-----~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLT-----SKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCT-----TTEEEEECSGGGGC
T ss_pred HHHHHHhCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECchhhcc
Confidence 3444556889999999999999999999998 56679999999999999999999998764 68999999999877
Q ss_pred CCCCCccEEEECCCC----chhHHHHHhccccCcEEEEEE
Q 022372 222 PEFAPYDAIHVGAAA----PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~----~~l~~~l~~~LkpGG~Lvi~v 257 (298)
.+.++||+|++.+.. .++.++..+.|+++|++++.=
T Consensus 86 ~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 86 EEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEEC
Confidence 654479998765543 455577778899999999854
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-15 Score=131.20 Aligned_cols=112 Identities=16% Similarity=0.262 Sum_probs=90.9
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...++.+|||+|||+|+.+..+++.++++++|+++|+++++++.|++++...+.. ++++++.+|+
T Consensus 48 ~~~~l~~l~-~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~gda 121 (242)
T 3r3h_A 48 QAQFMQMLI-RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-----HKIKLRLGPA 121 (242)
T ss_dssp HHHHHHHHH-HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHH-hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 344444443 1456689999999999999999998765789999999999999999999887654 6899999998
Q ss_pred CCCCCC------CCCccEEEECCCCch---hHHHHHhccccCcEEEE
Q 022372 218 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~------~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
.+..+. .++||+|+++..... +.+.+.+.|||||++++
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEE
Confidence 754332 368999999988654 45788999999999998
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-14 Score=125.09 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|.....++..+. +.++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|++++...+.. ++++++
T Consensus 97 ~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~v~~~ 169 (277)
T 1o54_A 97 YPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-----ERVTIK 169 (277)
T ss_dssp CHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-----GGEEEE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-----CCEEEE
Confidence 3445567777776 888999999999999999999998766789999999999999999999876542 579999
Q ss_pred EcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECC
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+|..+.+++ ++||+|+++.+.. .+.+.+.+.|||||++++..+.
T Consensus 170 ~~d~~~~~~~-~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 170 VRDISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp CCCGGGCCSC-CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred ECCHHHcccC-CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9998876443 6899999988765 6789999999999999998875
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-14 Score=118.03 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcc-CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 135 PHMHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 135 p~~~~~~l~~L~~~-l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
..+...+++.+... ..++.+|||+|||+|.++..+++. + ..+|+++|+++++++.|++++...+. ++++++
T Consensus 27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~ 98 (189)
T 3p9n_A 27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL------SGATLR 98 (189)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC------CceEEE
Confidence 34455566666522 157889999999999999988875 2 35899999999999999999988654 589999
Q ss_pred EcCCCCCCC--CCCCccEEEECCCCch-------hHHHHHh--ccccCcEEEEEECC
Q 022372 214 VGDGRKGWP--EFAPYDAIHVGAAAPE-------IPQALID--QLKPGGRMVIPVGN 259 (298)
Q Consensus 214 ~gD~~~~~~--~~~~fD~Ii~~~~~~~-------l~~~l~~--~LkpGG~Lvi~v~~ 259 (298)
++|..+... ..++||+|+++.+... +.+.+.+ .|||||++++....
T Consensus 99 ~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 99 RGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp ESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred EccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 999876421 2478999999988754 3366777 99999999997654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=126.36 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=91.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~gD 216 (298)
...+++.+. +.++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.|++++... +. ++++++.+|
T Consensus 99 ~~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------~~v~~~~~d 170 (275)
T 1yb2_A 99 ASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------GNVRTSRSD 170 (275)
T ss_dssp -------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------TTEEEECSC
T ss_pred HHHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------CcEEEEECc
Confidence 344555554 788899999999999999999998656689999999999999999998775 42 689999999
Q ss_pred CCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCC
Q 022372 217 GRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+.++ .++||+|+++..-. .+.+++.+.|||||++++..+..
T Consensus 171 ~~~~~~-~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 171 IADFIS-DQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp TTTCCC-SCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred hhccCc-CCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 988544 37899999976643 67899999999999999988764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-14 Score=117.55 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=96.2
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
.+...+...+++.+. +.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++...+.. ++++
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~ 85 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG-----DNVT 85 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC-----TTEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCC-----cceE
Confidence 445566677777775 7888999999999999999999875 69999999999999999999876542 5899
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEECC
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+..+|..+..+..++||+|+++.+.+ .+.+.+.+.|+|||++++....
T Consensus 86 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 86 LMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp EEESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred EEecCHHHhcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99998766333335899999998864 4557889999999999997653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-14 Score=128.15 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|++++...++. ++++++.+|..+.....++||
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD 187 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRID-----DHVRSRVCNMLDTPFDKGAVT 187 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCCCTTCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----CceEEEECChhcCCCCCCCEe
Confidence 56789999999999999999999853 68999999999999999999887653 589999999987654557999
Q ss_pred EEEECCCCch-----hHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPE-----IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi~v 257 (298)
+|++..++++ +.+++.+.|||||++++..
T Consensus 188 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 188 ASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999887654 4578899999999999865
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=125.55 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=90.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ++++.+|||+|||+|..+..+++..+ .+|+|+|+++.+++.|+++.... .+++++.+|.
T Consensus 44 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~ 111 (266)
T 3ujc_A 44 TKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGN--------NKIIFEANDI 111 (266)
T ss_dssp HHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCCSC--------TTEEEEECCT
T ss_pred HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhhcC--------CCeEEEECcc
Confidence 444555554 67889999999999999999999853 69999999999999998875431 5899999999
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
.....+.++||+|++..+++++ .+++.+.|||||++++..
T Consensus 112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8765556899999999988776 478889999999999965
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=127.21 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=90.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...++.+|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++...++. ++++++.+|+
T Consensus 67 ~~~ll~~l~-~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-----~~i~~~~gda 140 (247)
T 1sui_A 67 EGQFLSMLL-KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-----HKIDFREGPA 140 (247)
T ss_dssp HHHHHHHHH-HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHHH-HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CCeEEEECCH
Confidence 344444443 1456689999999999999999998755689999999999999999999886653 6899999998
Q ss_pred CCCCCC-------CCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 218 RKGWPE-------FAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~-------~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+..+. .++||+|+++.... .+.+.+.+.|||||++++.
T Consensus 141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence 653221 36899999998764 3557889999999999973
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=126.02 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=79.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhc------cCCc-----cCCCCEEEEEcCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA------AAPL-----LKEGSLSVHVGDG 217 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~------~~~~-----l~~~~v~~~~gD~ 217 (298)
..++.+|||+|||+|..+..|++. | .+|+|+|+|+.+++.|+++..... .... -...+++++++|+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~-G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR-G--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 457889999999999999999997 3 589999999999999987643100 0000 0125899999999
Q ss_pred CCCCCCC-CCccEEEECCCCch--------hHHHHHhccccCcEEEE
Q 022372 218 RKGWPEF-APYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~-~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 255 (298)
.+..+.. ++||+|++..++.+ +.+++.++|||||++++
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8765432 78999998877643 34678899999999964
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=126.61 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=91.0
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
++.+...+++|.+|||||||+|+++..+++. ++..+|+++|+++.+++.|++|+..+++. +++++..+|+.+.+
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~-----~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 12 LEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLT-----EQIDVRKGNGLAVI 85 (244)
T ss_dssp HHHHHTTCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT-----TTEEEEECSGGGGC
T ss_pred HHHHHHhCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEecchhhcc
Confidence 3444556889999999999999999999998 56679999999999999999999998764 57999999998877
Q ss_pred CCCCCccEEEECCC----CchhHHHHHhccccCcEEEEEE
Q 022372 222 PEFAPYDAIHVGAA----APEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~----~~~l~~~l~~~LkpGG~Lvi~v 257 (298)
.+..+||+|++... ..++.++..+.|+++|++|+.=
T Consensus 86 ~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 86 EKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 65346999876543 3455677788999999999854
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=114.86 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC--EEEE
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS--LSVH 213 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~--v~~~ 213 (298)
.....+++.+. .+++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+. .+ ++++
T Consensus 39 ~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~~ 107 (194)
T 1dus_A 39 KGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE-V--KSTTMADINRRAIKLAKENIKLNNL------DNYDIRVV 107 (194)
T ss_dssp HHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG-S--SEEEEEESCHHHHHHHHHHHHHTTC------TTSCEEEE
T ss_pred hHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHcCC------CccceEEE
Confidence 34566777775 668899999999999999999987 2 6999999999999999999987554 44 9999
Q ss_pred EcCCCCCCCCCCCccEEEECCCCc-------hhHHHHHhccccCcEEEEEECCC
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAAP-------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~~-------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+|..+..+ .++||+|+++.+++ .+.+.+.+.|||||++++.....
T Consensus 108 ~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 108 HSDLYENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp ECSTTTTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ECchhcccc-cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 999887554 47899999998764 34477889999999999987663
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=124.86 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=89.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
+.++..+. ...++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|..
T Consensus 53 ~~~l~~l~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 126 (225)
T 3tr6_A 53 AQLLALLV-KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-----DKIGLRLSPAK 126 (225)
T ss_dssp HHHHHHHH-HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCHH
T ss_pred HHHHHHHH-HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeCCHH
Confidence 44444443 2456789999999999999999998754689999999999999999999887653 56999999986
Q ss_pred CCCCC------CCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 219 KGWPE------FAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~~~~------~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
+..+. .++||+|+++.... .+.+.+.+.|||||++++.
T Consensus 127 ~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 127 DTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp HHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 53211 16899999988764 3457888999999999973
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=120.60 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=93.3
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
+.|..++++.+... ....+++.+...++++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..
T Consensus 32 ~~~~~~~f~~~~~~----~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~ 105 (205)
T 3grz_A 32 RLDPGLAFGTGNHQ----TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAAL 105 (205)
T ss_dssp EESCC-----CCHH----HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHH
T ss_pred EecCCcccCCCCCc----cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHH
Confidence 34455555555332 234455556545778899999999999999999885 3 36999999999999999999987
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCchh---HHHHHhccccCcEEEEE
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~ 256 (298)
.+. .++++..+|..... .++||+|+++.+.+++ .+++.+.|||||++++.
T Consensus 106 ~~~------~~v~~~~~d~~~~~--~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 106 NGI------YDIALQKTSLLADV--DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp TTC------CCCEEEESSTTTTC--CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEE
T ss_pred cCC------CceEEEeccccccC--CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 654 35999999987753 3789999999887654 46677899999999985
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=124.04 Aligned_cols=107 Identities=22% Similarity=0.136 Sum_probs=87.6
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ++++.+|||+|||+|..+..+++..+ .+|+|+|+++++++.|++++...+.. ++++++.+|..+
T Consensus 55 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~ 125 (287)
T 1kpg_A 55 LALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENL-----RSKRVLLAGWEQ 125 (287)
T ss_dssp HHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCC-----SCEEEEESCGGG
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CCeEEEECChhh
Confidence 3444443 67889999999999999999996654 49999999999999999998775543 589999999865
Q ss_pred CCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ++||+|++..+++++ .+++.+.|||||++++...
T Consensus 126 ~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 126 FD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp CC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 42 789999999877654 4778899999999999654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=124.62 Aligned_cols=129 Identities=13% Similarity=0.199 Sum_probs=98.2
Q ss_pred CCCccccCCCccChHH---HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197 (298)
Q Consensus 121 d~~~~~g~~~~is~p~---~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~ 197 (298)
+..+.+..+..+.+|. +...+++.+. ..++.+|||+|||+|.++..+++. +..+|+++|+++++++.|++|+.
T Consensus 92 ~~~~~v~~~~lipr~~te~lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~ 167 (284)
T 1nv8_A 92 GLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAE 167 (284)
T ss_dssp TEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHH
T ss_pred CeEEEeCCCceecChhHHHHHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHH
Confidence 3344445555555554 3334444443 346679999999999999999998 45799999999999999999998
Q ss_pred HhccCCccCCCCEEEEEcCCCCCCCCCCCc---cEEEECCCCc-------------------------hhHHHHH-hccc
Q 022372 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPY---DAIHVGAAAP-------------------------EIPQALI-DQLK 248 (298)
Q Consensus 198 ~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f---D~Ii~~~~~~-------------------------~l~~~l~-~~Lk 248 (298)
..+.. ++++++++|..+..+ ++| |+|+++++.. .+.+.+. +.|+
T Consensus 168 ~~~l~-----~~v~~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~ 240 (284)
T 1nv8_A 168 RHGVS-----DRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT 240 (284)
T ss_dssp HTTCT-----TSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred HcCCC-----CceEEEECcchhhcc--cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC
Confidence 87653 469999999987443 478 9999985532 4567888 9999
Q ss_pred cCcEEEEEECCC
Q 022372 249 PGGRMVIPVGNI 260 (298)
Q Consensus 249 pGG~Lvi~v~~~ 260 (298)
|||++++.++..
T Consensus 241 pgG~l~~e~~~~ 252 (284)
T 1nv8_A 241 SGKIVLMEIGED 252 (284)
T ss_dssp TTCEEEEECCTT
T ss_pred CCCEEEEEECch
Confidence 999999988764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=117.70 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=89.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+.+.+...++++.+|||+|||+|..+..+++.. + +++++|+++++++.|+++....+ .+++++.+|..
T Consensus 26 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~ 95 (227)
T 1ve3_A 26 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDAR 95 (227)
T ss_dssp HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCTT
T ss_pred HHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC-------CCceEEECchh
Confidence 33445554456778999999999999999999874 3 99999999999999999987643 57899999988
Q ss_pred CCCCCCCCccEEEECCC--Cc------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAA--AP------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~--~~------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.....++||+|++..+ .. .+.+++.+.|||||++++...+
T Consensus 96 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 96 KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp SCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 75444478999999988 43 2447888999999999997665
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=125.16 Aligned_cols=103 Identities=24% Similarity=0.311 Sum_probs=89.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|++++...+. ++++++.+|......+.++||
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD 107 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGI------KNVKFLQANIFSLPFEDSSFD 107 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGCCSCTTCEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEcccccCCCCCCCee
Confidence 578899999999999999999998 4668999999999999999999887654 589999999987655568999
Q ss_pred EEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|++..++++ +.+++.+.|||||++++..+
T Consensus 108 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 108 HIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999988754 44788999999999999654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=127.34 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=101.4
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+.....+.+.+.++..+. .+++.+|||+|||+|.++..++...++..+++|+|+++.+++.|++|+...++ .
T Consensus 183 ~~a~l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~------~ 254 (354)
T 3tma_A 183 LRGSLTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL------S 254 (354)
T ss_dssp SSCSCCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC------T
T ss_pred CCCCcCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC------C
Confidence 334455666666777665 77889999999999999999999865667999999999999999999988654 4
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC--------------chhHHHHHhccccCcEEEEEECCC
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++++.++|..+.....+.||+|+++.+. ..+.+.+.+.|||||++++..++.
T Consensus 255 ~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 255 WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp TCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred ceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 8999999998765545679999999875 234467889999999999988765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-14 Score=125.77 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.....+++.+. .+.++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.|++++...+ .+++++.+
T Consensus 8 ~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~v~~~~~ 79 (284)
T 3gu3_A 8 DYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEG 79 (284)
T ss_dssp HHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------SEEEEEES
T ss_pred HHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------CceEEEEc
Confidence 44555555553 36788999999999999999999986434799999999999999999886532 38999999
Q ss_pred CCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|..+... .++||+|++..++++ +.+++.+.|||||++++..++
T Consensus 80 d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 80 DATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred chhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9987544 479999999988754 447889999999999987765
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-14 Score=141.13 Aligned_cols=157 Identities=10% Similarity=0.057 Sum_probs=111.7
Q ss_pred HHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHH---HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC
Q 022372 101 EVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP 175 (298)
Q Consensus 101 ~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~---~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~ 175 (298)
+.+..++|..+.+.. ...|.+...+.....+...|. ....+++.+. ..++.+|||+|||+|+++..+++..++
T Consensus 668 R~~slLsre~~fEyals~lay~dea~p~me~gtFsPPL~eqRle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p 745 (950)
T 3htx_A 668 RIRSLLSERPCLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTS 745 (950)
T ss_dssp HHHHHTTSCEEEEEEEEEEEEECSCCCCCCCCCSSSCHHHHHHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCC
T ss_pred hhhhhcchhhhhhHHhhhhccccchhhHHhhCcCCchHHHHHHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCC
Confidence 455666666654322 233444444433333333333 3444566665 457899999999999999999998545
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCchhH--------HHHHhcc
Q 022372 176 QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--------QALIDQL 247 (298)
Q Consensus 176 ~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l~--------~~l~~~L 247 (298)
..+|+|+|+++.+++.|++++.........+..+++++++|+.+.....++||+|++..+++++. +++.+.|
T Consensus 746 ~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvL 825 (950)
T 3htx_A 746 LQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLF 825 (950)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHc
Confidence 57999999999999999998765422111234689999999988776668999999999987654 5678999
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
||| .++++.++.
T Consensus 826 KPG-~LIISTPN~ 837 (950)
T 3htx_A 826 HPK-LLIVSTPNY 837 (950)
T ss_dssp CCS-EEEEEECBG
T ss_pred CCC-EEEEEecCc
Confidence 999 888887764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=125.40 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=86.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
..++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|++++...+.. ++++++.+|..+.. ...++|
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAER-G--HQVILCDLSAQMIDRAKQAAEAKGVS-----DNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHC-CCG-----GGEEEEESCGGGTGGGCSSCE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEEcCHHHhhhhcCCCc
Confidence 345689999999999999999987 3 69999999999999999998876543 58999999988765 344799
Q ss_pred cEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|++..++++ +.+++.+.|||||++++...+
T Consensus 138 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 138 DLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 99999988764 457899999999999997653
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-14 Score=122.27 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~~~ 225 (298)
..++.+|||||||+|.++..+|+.. ++..|+|+|+++.+++.|++++...+. .|++++.+|+.+. ..+.+
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~~~ 104 (218)
T 3dxy_A 32 GREAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIPDN 104 (218)
T ss_dssp SSCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSCTT
T ss_pred CCCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcCCC
Confidence 3467899999999999999999984 668999999999999999999987654 6899999998764 12347
Q ss_pred CccEEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+||.|++..+.+ .+.+.+.+.|||||++++....
T Consensus 105 ~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 105 SLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp CEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999984322 3678899999999999997764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-14 Score=122.93 Aligned_cols=105 Identities=25% Similarity=0.246 Sum_probs=87.3
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
++.+...++++.+|||+|||+|..+..+++. + .+|+++|+++.+++.++++.. ..+++++.+|.....
T Consensus 44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~ 111 (242)
T 3l8d_A 44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-G--YKAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLP 111 (242)
T ss_dssp HHHHHHHSCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCS
T ss_pred HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCC
Confidence 3444444678899999999999999999997 3 689999999999999987641 268999999998765
Q ss_pred CCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 222 PEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.++||+|++..++++ +.+++.+.|||||++++...
T Consensus 112 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 112 FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 55689999999998864 45788999999999999774
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-14 Score=120.45 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|+++.... ++++++.+|..+.. ..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~-~~~~fD 116 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRW--------SHISWAATDILQFS-TAELFD 116 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTC--------SSEEEEECCTTTCC-CSCCEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccC--------CCeEEEEcchhhCC-CCCCcc
Confidence 5667899999999999999999885 69999999999999999887542 48999999998876 447999
Q ss_pred EEEECCCCchh---------HHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPEI---------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~l---------~~~l~~~LkpGG~Lvi~v 257 (298)
+|++..+++++ .+++.+.|||||++++..
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999877543 467889999999999965
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=119.98 Aligned_cols=103 Identities=16% Similarity=0.239 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~f 227 (298)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++...+. .|++++.+|+.... .+.++|
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~~~~ 109 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEV 109 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSC
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCcCCc
Confidence 467899999999999999999984 668999999999999999999887554 68999999987632 234689
Q ss_pred cEEEECCCC--------------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|+++.+. ..+.+++.+.|||||++++...+
T Consensus 110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999887543 24678899999999999998755
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-14 Score=124.95 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---CCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~~~ 226 (298)
.++.+|||+|||+|..+..++... +..+|+++|+++.+++.|+++....++ .+++++++|+.+.... .++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLAREAGHREA 151 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHTTSTTTTTC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhhcccccCCC
Confidence 467899999999999999999985 668999999999999999999988665 5799999998764332 368
Q ss_pred ccEEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
||+|++.+.. ..+.+.+.++|||||++++..+.
T Consensus 152 fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~ 186 (249)
T 3g89_A 152 YARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGP 186 (249)
T ss_dssp EEEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred ceEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998765 45778899999999999987764
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=120.76 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=88.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..++..+. ...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++... ++++++.+|..
T Consensus 33 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~ 102 (234)
T 3dtn_A 33 GVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYS 102 (234)
T ss_dssp HHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTT
T ss_pred HHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchh
Confidence 33344433 34577899999999999999999985 5579999999999999999886431 38999999998
Q ss_pred CCCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
+.... ++||+|++..++++ +.+++.+.|||||++++..
T Consensus 103 ~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 103 KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 86655 89999999988754 4577889999999999865
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=123.23 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++....+. ++++++.+|.....+ .++||+
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~~~~-~~~fD~ 179 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSALA-GQQFAM 179 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGGGT-TCCEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhhhcc-cCCccE
Confidence 567899999999999999999885 557999999999999999999988654 579999999877543 368999
Q ss_pred EEECCCC-------------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAA-------------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~-------------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+++.+. ..+.+.+.+.|||||++++..+.
T Consensus 180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9998643 22346788999999999997764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=124.61 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCCCCCCC---
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRKGWPEF--- 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~gD~~~~~~~~--- 224 (298)
..++.+|||+|||+|..+..+++.+.+..+|+|+|+++.+++.|++++... +. ..+++++++|..+.....
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~ 108 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----YKNVSFKISSSDDFKFLGADS 108 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----CTTEEEEECCTTCCGGGCTTT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----CCceEEEEcCHHhCCcccccc
Confidence 467899999999999999999987545589999999999999999998774 21 268999999998754444
Q ss_pred ---CCccEEEECCCCch-----hHHHHHhccccCcEEEE
Q 022372 225 ---APYDAIHVGAAAPE-----IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ---~~fD~Ii~~~~~~~-----l~~~l~~~LkpGG~Lvi 255 (298)
++||+|++..++++ +.+++.+.|||||++++
T Consensus 109 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 109 VDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 68999999988754 55788999999999988
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=122.21 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+.. ..++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.|+++.. .+++++.+|.
T Consensus 30 ~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~----------~~v~~~~~d~ 95 (250)
T 2p7i_A 30 HPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK----------DGITYIHSRF 95 (250)
T ss_dssp HHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC----------SCEEEEESCG
T ss_pred HHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh----------CCeEEEEccH
Confidence 4556666652 3467899999999999999999874 479999999999999988742 1789999998
Q ss_pred CCCCCCCCCccEEEECCCCchh------HHHHH-hccccCcEEEEEECCC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI------PQALI-DQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l------~~~l~-~~LkpGG~Lvi~v~~~ 260 (298)
.+.. ..++||+|++..+++++ .+++. +.|||||++++.+++.
T Consensus 96 ~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 96 EDAQ-LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp GGCC-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred HHcC-cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 7764 44789999999988654 47889 9999999999988653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=118.05 Aligned_cols=105 Identities=23% Similarity=0.206 Sum_probs=88.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|.++..+++. + .+++|+|+++.+++.+++++. .+++++.+|.
T Consensus 34 ~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~ 98 (220)
T 3hnr_A 34 YEDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA-G--RTVYGIEPSREMRMIAKEKLP----------KEFSITEGDF 98 (220)
T ss_dssp HHHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHSC----------TTCCEESCCS
T ss_pred HHHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHhCC----------CceEEEeCCh
Confidence 355667666 568889999999999999999987 3 699999999999999988752 3788999999
Q ss_pred CCCCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.... ++||+|++..++++ +.+++.+.|||||++++..+
T Consensus 99 ~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 99 LSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp SSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 876555 89999999998764 45788899999999999753
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=124.33 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|.++..+++.. .. +|+|+|+++.+++.|++|+..++.. ++++++++|+.+... .++||
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a~~n~~~n~~~-----~~v~~~~~D~~~~~~-~~~fD 194 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNRDFPG-ENIAD 194 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTTTCCC-CSCEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEECCHHHhcc-cCCcc
Confidence 6789999999999999999999984 43 7999999999999999999887753 569999999988766 47899
Q ss_pred EEEECCCCc--hhHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAP--EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|+++.+.. .+.+.+.+.|||||++++...
T Consensus 195 ~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 195 RILMGYVVRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCchhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 999998754 577899999999999998543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=128.76 Aligned_cols=113 Identities=20% Similarity=0.216 Sum_probs=92.0
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|++++..++.. ...++++..+|..+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~---~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS 286 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGG---GGGGEEEEECSTTT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCC---cCceEEEEechhhc
Confidence 4555554 4556899999999999999999984 6689999999999999999999887642 11368999999988
Q ss_pred CCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECC
Q 022372 220 GWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++ ++||+|+++.+++ .+.+++.+.|||||++++..+.
T Consensus 287 ~~~~-~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 287 GVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp TCCT-TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cCCC-CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 6544 7899999998864 3468889999999999996654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=115.96 Aligned_cols=105 Identities=18% Similarity=0.104 Sum_probs=86.5
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+. ++++++.+|...
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~ 91 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN-G--YDVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNN 91 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGG
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhh
Confidence 3455554 556789999999999999999987 3 6999999999999999999877654 479999999877
Q ss_pred CCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
... .++||+|++..++++ +.+++.+.|||||++++.
T Consensus 92 ~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 92 LTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp CCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 544 578999999987654 347788999999998774
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=117.86 Aligned_cols=110 Identities=22% Similarity=0.199 Sum_probs=88.3
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+.+.+...++++.+|||+|||+|.++..+++. ++ .+++++|+++.+++.++++... .++++++.+|....
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRKL 101 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTSC
T ss_pred HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhcC
Confidence 44555545788899999999999999999987 44 3899999999999999988643 15789999998875
Q ss_pred CCCCCCccEEEECCCC---------------------chhHHHHHhccccCcEEEEEECCC
Q 022372 221 WPEFAPYDAIHVGAAA---------------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~---------------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
....++||+|++..++ ..+.+++.+.|||||++++...+.
T Consensus 102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 4445789999987765 234577889999999999977653
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=127.36 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=90.2
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. ++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++.+.+. .+++++++|+....
T Consensus 111 ~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~ 182 (315)
T 1ixk_A 111 PVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIG 182 (315)
T ss_dssp HHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGG
T ss_pred HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhcc
Confidence 34454 78899999999999999999999876668999999999999999999988664 58999999987644
Q ss_pred CCCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 222 PEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++||+|+++++. ..+.+++.+.|||||++++...
T Consensus 183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 334689999997652 2455778899999999999654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=122.90 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHH------HHHHHHHHHHHhccCCccCCCCEE
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE------LVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~------~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
...+++.+. ++++.+|||||||+|..+..+++..++..+|+|+|+++. +++.|++++...+.. ++++
T Consensus 32 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-----~~v~ 104 (275)
T 3bkx_A 32 RLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-----DRLT 104 (275)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-----GGEE
T ss_pred HHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-----CceE
Confidence 444566665 788999999999999999999998767679999999997 999999998775543 5899
Q ss_pred EEEcC-CC--CCCCCCCCccEEEECCCCchhH------HHHHhccccCcEEEEEE
Q 022372 212 VHVGD-GR--KGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 212 ~~~gD-~~--~~~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v 257 (298)
++.+| .. ......++||+|++..+++++. +.+.++++|||++++..
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998 32 2222347899999998876543 45556667799999854
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-14 Score=123.30 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=90.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++++++.|++++.+.+.. ++++++.+|.
T Consensus 58 ~~~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~gda 131 (237)
T 3c3y_A 58 AGQLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-----HKINFIESDA 131 (237)
T ss_dssp HHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 3444555432 456689999999999999999998755789999999999999999999886653 5799999998
Q ss_pred CCCCC-------CCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 218 RKGWP-------EFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~-------~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+..+ ..++||+|+++.... .+.+.+.+.|||||++++.
T Consensus 132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 65322 136899999998764 3457889999999999874
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=116.41 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=90.9
Q ss_pred HHHHHHHHHcc-CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~-l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+... ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+. .+++++.+|
T Consensus 51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d 123 (207)
T 1jsx_A 51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSR 123 (207)
T ss_dssp HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECC
T ss_pred HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecc
Confidence 44455555411 1147899999999999999999985 557999999999999999999987654 469999999
Q ss_pred CCCCCCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEECCC
Q 022372 217 GRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+..+ .++||+|+++... ..+.+.+.+.|||||++++..+..
T Consensus 124 ~~~~~~-~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 168 (207)
T 1jsx_A 124 VEEFPS-EPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp TTTSCC-CSCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred hhhCCc-cCCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 987553 3689999987543 346688899999999999987643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=116.74 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
....+...+++.+. ...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+.. +++++
T Consensus 27 ~~~~~~~~~~~~l~-~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~ 98 (187)
T 2fhp_A 27 TTDKVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEP-----EKFEV 98 (187)
T ss_dssp CCHHHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEE
T ss_pred CHHHHHHHHHHHHH-hhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCC-----cceEE
Confidence 34455666666664 2457889999999999999988885 2 369999999999999999999886643 57999
Q ss_pred EEcCCCCCCC----CCCCccEEEECCCCc-----hhHHHH--HhccccCcEEEEEECCC
Q 022372 213 HVGDGRKGWP----EFAPYDAIHVGAAAP-----EIPQAL--IDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 213 ~~gD~~~~~~----~~~~fD~Ii~~~~~~-----~l~~~l--~~~LkpGG~Lvi~v~~~ 260 (298)
+.+|..+..+ ..++||+|+++.+.. ...+.+ .+.|||||++++..+..
T Consensus 99 ~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 99 RKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 9999876322 136899999998743 234555 67899999999987664
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=122.50 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-C-CCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-E-FAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~-~~~ 226 (298)
++++.+|||+|||+|..+..+++. + .+|+++|+++.+++.++++. ++++++++|..+..+ . .++
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~ 111 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ-A--ARWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAP 111 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG-S--SEEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCC
Confidence 678899999999999999999987 3 69999999999999999871 578999999964333 3 478
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
||+|++......+.+++.+.|||||+++.+
T Consensus 112 fD~v~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (226)
T 3m33_A 112 FGLIVSRRGPTSVILRLPELAAPDAHFLYV 141 (226)
T ss_dssp EEEEEEESCCSGGGGGHHHHEEEEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHcCCCcEEEEe
Confidence 999999988888999999999999999943
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=120.19 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|..+..+ ..+ |
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~-f 127 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-----DRVELQVGDPLGIAAGQRD-I 127 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-----GGEEEEESCHHHHHTTCCS-E
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-----ceEEEEEecHHHHhccCCC-C
Confidence 345679999999999999999998644689999999999999999999876653 579999999865322 225 9
Q ss_pred cEEEECCCCc---hhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAP---EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+++.... .+.+.+.+.|||||++++
T Consensus 128 D~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 128 DILFMDCDVFNGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp EEEEEETTTSCHHHHHHHHGGGEEEEEEEEE
T ss_pred CEEEEcCChhhhHHHHHHHHHhcCCCeEEEE
Confidence 9999987654 456888999999999997
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-14 Score=128.16 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=88.6
Q ss_pred HccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 146 EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 146 ~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
...++++.+|||+|||+|..+..++....+..+|+++|+++.+++.|++++...+.. ++++++.+|..+...+ +
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~-~ 186 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-----GQITLHRQDAWKLDTR-E 186 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-----GGEEEEECCGGGCCCC-S
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECchhcCCcc-C
Confidence 334788999999999999999998633346679999999999999999998776543 5699999999886555 8
Q ss_pred CccEEEECCCCch---------hHHHHHhccccCcEEEEEE
Q 022372 226 PYDAIHVGAAAPE---------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 226 ~fD~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~v 257 (298)
+||+|+++.++++ +.+++.+.|||||++++..
T Consensus 187 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 187 GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp CEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999999887754 3578889999999999965
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=122.57 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---CCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~~~ 226 (298)
+++.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.|+++....+. .+++++++|..+.... .++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~ 141 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRES 141 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhcccccccCC
Confidence 56789999999999999999986 3557999999999999999999988654 5799999998654321 368
Q ss_pred ccEEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
||+|++.... ..+.+.+.+.|||||++++..+.
T Consensus 142 fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 142 YDIVTARAVARLSVLSELCLPLVKKNGLFVALKAA 176 (240)
T ss_dssp EEEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ccEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9999998753 34668888999999999997654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=121.16 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=89.1
Q ss_pred HHHHHHHHH---HccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 137 MHATCLQLL---EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 137 ~~~~~l~~L---~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
....+++.+ ...++++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.+++++ ... ..+++++
T Consensus 22 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~-~~~------~~~~~~~ 91 (263)
T 2yqz_A 22 VAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-G--YRYIALDADAAMLEVFRQKI-AGV------DRKVQVV 91 (263)
T ss_dssp HHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-T--CEEEEEESCHHHHHHHHHHT-TTS------CTTEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHh-hcc------CCceEEE
Confidence 344555555 224678899999999999999999986 3 69999999999999999887 211 2689999
Q ss_pred EcCCCCCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEE
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v 257 (298)
.+|........++||+|++..+++++ .+++.+.|||||++++..
T Consensus 92 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 92 QADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp ESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence 99997755455789999999887543 478889999999999864
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=122.45 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=88.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++. ++++++.+|.
T Consensus 22 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~ 87 (259)
T 2p35_A 22 ARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADL 87 (259)
T ss_dssp HHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCT
T ss_pred HHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECCh
Confidence 344555554 5678899999999999999999985 4579999999999999998771 5789999998
Q ss_pred CCCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.... ..++||+|++..+++++ .+++.+.|||||++++.+++
T Consensus 88 ~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 88 ATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp TTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8755 45789999999987654 47788999999999998753
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.7e-14 Score=120.09 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.+...+++.+.. ..++.+|||+|||+|.++..++.. +. .+|+++|+++++++.|++++...+. ..++++++.+
T Consensus 39 ~~~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~v~~~~~ 111 (201)
T 2ift_A 39 RVKETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSR-QA-KKVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQ 111 (201)
T ss_dssp HHHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECS
T ss_pred HHHHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHc-cC-CEEEEEECCHHHHHHHHHHHHHhCC----CccceEEEEC
Confidence 344555565542 126789999999999999987776 33 5899999999999999999987553 1148999999
Q ss_pred CCCCCCCC--CCC-ccEEEECCCCc-----hhHHHH--HhccccCcEEEEEECCC
Q 022372 216 DGRKGWPE--FAP-YDAIHVGAAAP-----EIPQAL--IDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 216 D~~~~~~~--~~~-fD~Ii~~~~~~-----~l~~~l--~~~LkpGG~Lvi~v~~~ 260 (298)
|..+..+. .++ ||+|+++.++. .+.+.+ .+.|||||++++.....
T Consensus 112 d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 112 SSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CHHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 98654332 368 99999998843 344556 45799999999977654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=121.16 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=85.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+...++++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++. .+++++.+|.
T Consensus 37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~ 102 (263)
T 3pfg_A 37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN-----------PDAVLHHGDM 102 (263)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC-----------TTSEEEECCT
T ss_pred HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC-----------CCCEEEECCh
Confidence 344555555456778899999999999999999873 58999999999999998874 3688999999
Q ss_pred CCCCCCCCCccEEEECC-CCchh---------HHHHHhccccCcEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGA-AAPEI---------PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~-~~~~l---------~~~l~~~LkpGG~Lvi~ 256 (298)
..... .++||+|++.. +++++ .+++.+.|||||++++.
T Consensus 103 ~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 103 RDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp TTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 87554 47999999997 66544 46788999999999995
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-13 Score=110.54 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=92.2
Q ss_pred ccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 131 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
....+.+...+++.+. ..++.+|||+|||+|..+..+++ +..+++++|+++.+++.|++++...+. +++
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~ 85 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNC 85 (183)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC------CSE
T ss_pred CcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcE
Confidence 4555667777888775 77889999999999999999998 337999999999999999999987654 579
Q ss_pred EEEEcCCCCCCCCCCCccEEEECCC--CchhHHHHHhccccCcEEEEEECC
Q 022372 211 SVHVGDGRKGWPEFAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 211 ~~~~gD~~~~~~~~~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++.+|..+..+. ++||+|+++.+ ...+.+.+.+. |||++++....
T Consensus 86 ~~~~~d~~~~~~~-~~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 86 QIIKGRAEDVLDK-LEFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp EEEESCHHHHGGG-CCCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred EEEECCccccccC-CCCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecc
Confidence 9999998774333 68999999987 12344556666 99999998754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-14 Score=121.36 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---C-
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---F- 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~- 224 (298)
..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|..+..+. .
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----~~i~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-----HKIDLRLKPALETLDELLAAG 141 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-----TTEEEEESCHHHHHHHHHHTT
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-----CeEEEEEcCHHHHHHHHHhcC
Confidence 566789999999999999999998654689999999999999999999886653 6899999987543211 1
Q ss_pred --CCccEEEECCCCc---hhHHHHHhccccCcEEEE
Q 022372 225 --APYDAIHVGAAAP---EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 --~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi 255 (298)
++||+|+++.... .+.+.+.+.|||||++++
T Consensus 142 ~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~ 177 (229)
T 2avd_A 142 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV 177 (229)
T ss_dssp CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 5899999998765 456888999999999998
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=121.19 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=90.2
Q ss_pred HHHHHHHHccCC-CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 139 ATCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 139 ~~~l~~L~~~l~-~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
+.++..+. .++ ++.+|||+|||+|..+..+++.. + .+|+|+|+++.+++.|++++..+++. ++++++++|.
T Consensus 37 ~~ll~~~~-~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~~-----~~v~~~~~D~ 108 (259)
T 3lpm_A 37 AVLLAKFS-YLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQLE-----DQIEIIEYDL 108 (259)
T ss_dssp HHHHHHHC-CCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTCT-----TTEEEECSCG
T ss_pred HHHHHHHh-cCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCCc-----ccEEEEECcH
Confidence 33344432 366 78999999999999999999884 4 39999999999999999999987664 5799999998
Q ss_pred CCCCC--CCCCccEEEECCCCc--------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 218 RKGWP--EFAPYDAIHVGAAAP--------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 218 ~~~~~--~~~~fD~Ii~~~~~~--------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+... ..++||+|+++.+.. .+.+.+.+.|||||++++..+.
T Consensus 109 ~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 109 KKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp GGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred HHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 87542 247899999987642 2457888999999999997654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-14 Score=126.34 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=85.0
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC------------------
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP------------------ 203 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~------------------ 203 (298)
+..+.....++.+|||||||+|..+..+++.++ ..+|+|+|+++.+++.|++++.......
T Consensus 37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (292)
T 3g07_A 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEE 115 (292)
T ss_dssp GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC-------------------------
T ss_pred HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 344432334678999999999999999999864 3699999999999999999876543110
Q ss_pred ---------------------------------cc-CCCCEEEEEcCCCCCC-----CCCCCccEEEECCCCch------
Q 022372 204 ---------------------------------LL-KEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAAPE------ 238 (298)
Q Consensus 204 ---------------------------------~l-~~~~v~~~~gD~~~~~-----~~~~~fD~Ii~~~~~~~------ 238 (298)
.- -..+++++++|..... ...++||+|++..++.+
T Consensus 116 ~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~ 195 (292)
T 3g07_A 116 GTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWG 195 (292)
T ss_dssp --------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHH
T ss_pred ccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCC
Confidence 00 0048999999987644 23478999999998743
Q ss_pred ------hHHHHHhccccCcEEEEEE
Q 022372 239 ------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 239 ------l~~~l~~~LkpGG~Lvi~v 257 (298)
+.+++.+.|||||+|++..
T Consensus 196 ~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 196 DEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEec
Confidence 3478889999999999853
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-13 Score=115.14 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=87.7
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. .++++.+|||+|||+|.++..+++. + .+|+++|+++.+++.+++ .+ ..+++++.+|.
T Consensus 34 ~~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~----~~------~~~~~~~~~d~ 99 (218)
T 3ou2_A 34 APAALERLR-AGNIRGDVLELASGTGYWTRHLSGL-A--DRVTALDGSAEMIAEAGR----HG------LDNVEFRQQDL 99 (218)
T ss_dssp HHHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH-S--SEEEEEESCHHHHHHHGG----GC------CTTEEEEECCT
T ss_pred HHHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHh----cC------CCCeEEEeccc
Confidence 344556554 3677789999999999999999998 3 699999999999999987 22 15899999999
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEECCC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+. ...++||+|++..+++++ .+++.+.|||||++++...+.
T Consensus 100 ~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 100 FDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp TSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 877 445899999999987543 467889999999999976543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=115.99 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=89.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ...++.+|||+|||+|..+..+++. + ..+|+++|+++++++.|++++...+.. ++++++.+|.
T Consensus 19 ~~~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 90 (177)
T 2esr_A 19 RGAIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAE-----NRFTLLKMEA 90 (177)
T ss_dssp HHHHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCG-----GGEEEECSCH
T ss_pred HHHHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECcH
Confidence 445555553 2457789999999999999999987 3 369999999999999999999876543 4799999998
Q ss_pred CCCCC-CCCCccEEEECCCCc-----hhHHHHH--hccccCcEEEEEECCC
Q 022372 218 RKGWP-EFAPYDAIHVGAAAP-----EIPQALI--DQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~~-~~~~fD~Ii~~~~~~-----~l~~~l~--~~LkpGG~Lvi~v~~~ 260 (298)
.+..+ ..++||+|+++.+.. ...+.+. +.|||||++++.....
T Consensus 91 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 91 ERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 66321 225799999998862 3345565 8899999999987654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-14 Score=122.64 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|..+..+++. ++ .+|+|+|+++.+++.|+++.. ..+++++.+|........++||+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEH-GA-KKVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGGGCCCCTTCEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchhhCCCCCCCeEE
Confidence 47889999999999999999998 33 399999999999999998764 26899999998775555589999
Q ss_pred EEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|++..++++ +.+++.+.|||||++++.+.+
T Consensus 112 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 112 VLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999998754 447889999999999997654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=123.21 Aligned_cols=101 Identities=22% Similarity=0.191 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|.++..+++..+ .+|+|+|+++++++.|+++....+.. ++++++.+|..+. + ++||
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~--~-~~fD 157 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTN-----RSRQVLLQGWEDF--A-EPVD 157 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESCGGGC--C-CCCS
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECChHHC--C-CCcC
Confidence 67889999999999999999998853 59999999999999999998876543 5799999998654 2 6899
Q ss_pred EEEECCCCchh--------HHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++..+++++ .+++.+.|||||++++....
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999877554 36788999999999996543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=115.32 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=86.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ...++.+|||+|||+|..+..++...+ .+|+++|+++.+++.|+++....+ .+++++.+|.
T Consensus 11 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~ 80 (209)
T 2p8j_A 11 LYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENN-------FKLNISKGDI 80 (209)
T ss_dssp HHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHHT-------CCCCEEECCT
T ss_pred HHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC-------CceEEEECch
Confidence 444555554 367789999999999997544433322 699999999999999999987643 4688999998
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEECC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.....+.++||+|++..+++++ .+++.+.|||||++++...+
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 81 RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp TSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8755445789999998876554 36788999999999997643
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-14 Score=123.05 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~ 224 (298)
..++.+|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++...+.. ++++++.+|..+..+ ..
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~~d~~~~l~~l~~~~ 144 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-----EKISLRLGPALATLEQLTQGK 144 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEESCHHHHHHHHHTSS
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCHHHHHHHHHhcC
Confidence 446689999999999999999998755679999999999999999999887653 579999999754211 12
Q ss_pred --CCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 225 --APYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 225 --~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
++||+|+++.... .+.+.+.+.|||||++++.
T Consensus 145 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 145 PLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp SCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 6899999998754 4557889999999999984
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=128.49 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC--CccCCCCEEEEEcCCCCC------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA--PLLKEGSLSVHVGDGRKG------ 220 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~--~~l~~~~v~~~~gD~~~~------ 220 (298)
+.++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.|++++...... ..+...+++++.+|..+.
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999998767789999999999999999988754110 001226899999999874
Q ss_pred CCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
..+.++||+|+++.++++ +.+++.+.|||||++++..
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 344579999999998764 4588999999999999954
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=118.69 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=84.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.++++.+.. .+++++.+|..+.. ...+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------CCCEEEEccCCCcchhhcccC
Confidence 568899999999999999999998766689999999999999998887542 58999999987621 1225
Q ss_pred CccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 226 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+||+|+++.+... +.+++.+.|||||++++.+.
T Consensus 143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8999999987542 36788999999999999753
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=114.07 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++ +|||+|||+|..+..+++. + .+|+++|+++.+++.|+++....+ .++.+..+|......+.++||
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD 96 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-G--YEVTAVDQSSVGLAKAKQLAQEKG-------VKITTVQSNLADFDIVADAWE 96 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-T--CEEEEECSSHHHHHHHHHHHHHHT-------CCEEEECCBTTTBSCCTTTCS
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcChhhcCCCcCCcc
Confidence 5677 9999999999999999986 3 599999999999999999987653 378999999887654557899
Q ss_pred EEEECCCC------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++.... ..+.+++.+.|||||++++....
T Consensus 97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 97 GIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred EEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99986532 23457888999999999997754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=117.29 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.+...+++.+... .++.+|||+|||+|.++..+++.. . .+|+++|+++.+++.|++++...+. .+++++++
T Consensus 40 ~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~-~-~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~ 110 (202)
T 2fpo_A 40 RVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRY-A-AGATLIEMDRAVSQQLIKNLATLKA------GNARVVNS 110 (202)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTT-C-SEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECS
T ss_pred HHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcC-C-CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEC
Confidence 3445556665421 267899999999999999877763 2 4899999999999999999987653 58999999
Q ss_pred CCCCCC-CCCCCccEEEECCCCc-----hhHHHHHh--ccccCcEEEEEECC
Q 022372 216 DGRKGW-PEFAPYDAIHVGAAAP-----EIPQALID--QLKPGGRMVIPVGN 259 (298)
Q Consensus 216 D~~~~~-~~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~v~~ 259 (298)
|..+.. ...++||+|+++.+++ .+.+.+.+ .|||||++++....
T Consensus 111 D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 111 NAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 976532 2336899999998843 34455654 59999999997764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=112.12 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
..+...+++.+...++++.+|||+|||+|..+..+++. ++ .|+++|+++++++.|++++...+. +++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~--~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~ 94 (171)
T 1ws6_A 25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GW--EAVLVEKDPEAVRLLKENVRRTGL-------GARVVA 94 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TC--EEEEECCCHHHHHHHHHHHHHHTC-------CCEEEC
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CC--eEEEEeCCHHHHHHHHHHHHHcCC-------ceEEEe
Confidence 34555666666533447889999999999999999987 33 499999999999999999887531 788999
Q ss_pred cCCCCCCC----CCCCccEEEECCCC----chhHHHHH--hccccCcEEEEEECCCc
Q 022372 215 GDGRKGWP----EFAPYDAIHVGAAA----PEIPQALI--DQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 215 gD~~~~~~----~~~~fD~Ii~~~~~----~~l~~~l~--~~LkpGG~Lvi~v~~~~ 261 (298)
+|..+..+ ..++||+|+++.+. +++.+.+. +.|||||++++..+...
T Consensus 95 ~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 95 LPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred ccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 98765321 12479999999654 45667777 99999999999887653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-13 Score=119.25 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
++++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.|++++...+.. .+++++.+|...... ..++|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~f 134 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRR-----FKVFFRAQDSYGRHMDLGKEF 134 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCS-----SEEEEEESCTTTSCCCCSSCE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCC-----ccEEEEECCccccccCCCCCc
Confidence 678899999999999999998887 3 259999999999999999998765432 578999999987543 45789
Q ss_pred cEEEECCCCch----------hHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAPE----------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++..++++ +.+++.+.|||||++++.+++.
T Consensus 135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99999988743 3367889999999999988663
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-14 Score=122.14 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~~~~ 226 (298)
.+++.+|||+|||+|..+..+++. ++ .+|+++|+++.+++.|+++....+ .+++++.+|..+. ....++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~ 128 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA-PI-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDVAPTLPDGH 128 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS-CE-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHHGGGSCTTC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHHHhcC-------CCeEEEecCHHHhhcccCCCc
Confidence 567889999999999999999775 22 489999999999999999876532 5799999998764 334478
Q ss_pred ccEEEE-CCCC-----c-----hhHHHHHhccccCcEEEEE
Q 022372 227 YDAIHV-GAAA-----P-----EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 227 fD~Ii~-~~~~-----~-----~l~~~l~~~LkpGG~Lvi~ 256 (298)
||+|++ .... + .+.+++.++|||||++++.
T Consensus 129 fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 999999 3321 1 2357889999999999973
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=119.87 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
..++.+|||||||+|.++..+|+.. +...|+|+|+++.+++.|++++.........+..|++++.+|+...+ .+.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 4567799999999999999999884 66799999999999999998876421100012368999999998632 2447
Q ss_pred CccEEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+||.|++..+.+ .+.+++.+.|||||++++....
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 899998876532 4678899999999999997764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=123.27 Aligned_cols=121 Identities=26% Similarity=0.464 Sum_probs=89.7
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhc
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~ 200 (298)
+..+.++.+.+.+ ...+++.+...++++.+|||+|||+|.++..+++. ++ +|+++|+++.+++.|+++...++
T Consensus 94 ~p~~~fgtg~~~t----t~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g~--~v~gvDi~~~~v~~a~~n~~~~~ 166 (254)
T 2nxc_A 94 EPGMAFGTGHHET----TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-GG--KALGVDIDPMVLPQAEANAKRNG 166 (254)
T ss_dssp CCC-----CCSHH----HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-TC--EEEEEESCGGGHHHHHHHHHHTT
T ss_pred CCCccccCCCCHH----HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-CC--eEEEEECCHHHHHHHHHHHHHcC
Confidence 4445566554432 33344555444678899999999999999999886 43 99999999999999999998755
Q ss_pred cCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 201 ~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
. . +++..+|.....+ .++||+|+++...+ .+.+.+.+.|||||++++.
T Consensus 167 ~------~-v~~~~~d~~~~~~-~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 167 V------R-PRFLEGSLEAALP-FGPFDLLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp C------C-CEEEESCHHHHGG-GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C------c-EEEEECChhhcCc-CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 3 7888888765433 36899999987654 4557888999999999985
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=122.23 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~~~~ 226 (298)
..+|.+|||||||+|+.+..+++.. + .++++||+++++++.|+++....+ .+++++.+|+... ..+.++
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~ 128 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDVAPTLPDGH 128 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHHGGGSCTTC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhCC-------CceEEEeehHHhhcccccccC
Confidence 5688999999999999999998863 3 589999999999999999876543 4788888886542 223478
Q ss_pred ccEEEECCCC-----c------hhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAA-----P------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~-----~------~l~~~l~~~LkpGG~Lvi 255 (298)
||.|+.+... . .+.+++.++|||||++++
T Consensus 129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred CceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 9999887643 1 234778999999999987
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=118.90 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=85.9
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+...+. ..++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.|+++... .+++++.+|....
T Consensus 35 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~ 101 (243)
T 3bkw_A 35 LRAMLP--EVGGLRIVDLGCGFGWFCRWAHEH-GA-SYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKL 101 (243)
T ss_dssp HHHHSC--CCTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGC
T ss_pred HHHhcc--ccCCCEEEEEcCcCCHHHHHHHHC-CC-CeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhc
Confidence 444443 457889999999999999999987 32 3999999999999999876532 4789999998775
Q ss_pred CCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....++||+|++..++++ +.+++.+.|||||++++.+.+
T Consensus 102 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 102 HLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 544578999999988754 447889999999999997754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=119.04 Aligned_cols=99 Identities=20% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.|+++....+.. .+++++.+|..+..+. ++||+|
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~fD~v 136 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKA-----EYFSFVKEDVFTWRPT-ELFDLI 136 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGG-----GGEEEECCCTTTCCCS-SCEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCC-----cceEEEECchhcCCCC-CCeeEE
Confidence 3459999999999999998764 378999999999999999988653322 5799999999886544 699999
Q ss_pred EECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++..++++ +.+++.+.|||||++++...
T Consensus 137 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 137 FDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp EEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 99887753 34788899999999998553
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-14 Score=122.71 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=70.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+ .+++++++|.
T Consensus 18 ~~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~ 88 (215)
T 4dzr_A 18 VEEAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG-------AVVDWAAADG 88 (215)
T ss_dssp HHHHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------------CCHHHH
T ss_pred HHHHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC-------CceEEEEcch
Confidence 344445443 12678899999999999999999984 56799999999999999999887643 1678888887
Q ss_pred CCCCCC----CCCccEEEECCCC--------------------------------chhHHHHHhccccCcE-EEEEECC
Q 022372 218 RKGWPE----FAPYDAIHVGAAA--------------------------------PEIPQALIDQLKPGGR-MVIPVGN 259 (298)
Q Consensus 218 ~~~~~~----~~~fD~Ii~~~~~--------------------------------~~l~~~l~~~LkpGG~-Lvi~v~~ 259 (298)
.+..+. .++||+|+++.+. ..+.+.+.+.|||||+ +++.++.
T Consensus 89 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 167 (215)
T 4dzr_A 89 IEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH 167 (215)
T ss_dssp HHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred HhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 763321 2789999998664 2333556689999999 6665543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=124.56 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=88.6
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+.+.+. ..++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|+++....... ....++.+..+|
T Consensus 45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d 117 (293)
T 3thr_A 45 YKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEAN 117 (293)
T ss_dssp HHHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECC
T ss_pred HHHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecC
Confidence 3455566665 567889999999999999999987 3 49999999999999999887543221 112478888888
Q ss_pred CCCCC---CCCCCccEEEEC-CCCch-------------hHHHHHhccccCcEEEEEECC
Q 022372 217 GRKGW---PEFAPYDAIHVG-AAAPE-------------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 217 ~~~~~---~~~~~fD~Ii~~-~~~~~-------------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..... ...++||+|++. .++++ +.+++.+.|||||++++.+++
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 76643 344799999997 55533 447889999999999998754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-13 Score=116.38 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----~~~~~ 224 (298)
++++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.|+++.... +++.++.+|... ....
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--------~~v~~~~~d~~~~~~~~~~~- 141 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--------ENIIPILGDANKPQEYANIV- 141 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTTCGGGGTTTS-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--------CCeEEEECCCCCcccccccC-
Confidence 56889999999999999999999865 579999999999999999886432 689999999876 4334
Q ss_pred CCccEEEECCCCc----hhHHHHHhccccCcEEEEEE
Q 022372 225 APYDAIHVGAAAP----EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 225 ~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~v 257 (298)
++||+|+.+..-. .+.+++.+.|||||++++.+
T Consensus 142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 6899999775443 34788999999999999964
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=116.83 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=89.7
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+.+.+.....++.+|||+|||+|..+..+++.. .+++++|+++.+++.|+++....+ .+++++.+|
T Consensus 23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~d 92 (246)
T 1y8c_A 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCC
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhcC-------CCeEEEecc
Confidence 3455566665333477899999999999999999873 589999999999999999987643 278899999
Q ss_pred CCCCCCCCCCccEEEECC-CCchh---------HHHHHhccccCcEEEEEECC
Q 022372 217 GRKGWPEFAPYDAIHVGA-AAPEI---------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~-~~~~l---------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
......+ ++||+|++.. +++++ .+++.+.|||||++++.+.+
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8775444 7899999998 76654 36788999999999997764
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=120.22 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---hccCCccCCCCEEEEEcCCCCCC----
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK---SAAAPLLKEGSLSVHVGDGRKGW---- 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~---~~~~~~l~~~~v~~~~gD~~~~~---- 221 (298)
..++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++.. +++. ++++++++|..+..
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-----~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS-----ARIEVLEADVTLRAKARV 107 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-----GGEEEEECCTTCCHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-----ceEEEEeCCHHHHhhhhh
Confidence 5677899999999999999999985 557999999999999999999876 5443 47999999998752
Q ss_pred ---CCCCCccEEEECCCCc------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 222 ---PEFAPYDAIHVGAAAP------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~~------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...++||+|+++.+.. .+.+.+.+.|||||++++..+.
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 2346899999995542 3456778899999999997664
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=118.35 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|+++.... .+++++.+|........++||
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGGGCCCCSSCEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--------CceEEEEccHHHCCCCCCCeE
Confidence 4578899999999999999999885 258999999999999999886431 578999999877554557899
Q ss_pred EEEECCCCchh--------HHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|++..+++++ .+++.+.|||||++++..+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999987665 3678899999999999764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=120.69 Aligned_cols=104 Identities=32% Similarity=0.425 Sum_probs=86.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. +.++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++++. +++++..+|..
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~ 110 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKARQNY-----------PHLHFDVADAR 110 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----------TTSCEEECCTT
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChh
Confidence 34456665 678899999999999999999983 379999999999999998764 46788999988
Q ss_pred CCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.... .++||+|++..++++ +.+++.+.|||||++++.++.
T Consensus 111 ~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 111 NFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp TCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 7544 478999999988754 457899999999999997754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-13 Score=118.73 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=86.5
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|++++...+ .+++++.+|...
T Consensus 111 ~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~-g--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~ 178 (286)
T 3m70_A 111 DVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL-G--YDVTSWDHNENSIAFLNETKEKEN-------LNISTALYDINA 178 (286)
T ss_dssp HHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCGGG
T ss_pred HHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHHcC-------CceEEEEecccc
Confidence 3455555 347889999999999999999997 3 599999999999999999988753 278999999887
Q ss_pred CCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
... .++||+|+++.++++ +.+++.+.|||||++++..
T Consensus 179 ~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 179 ANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554 578999999987653 4477889999999987744
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=122.72 Aligned_cols=109 Identities=23% Similarity=0.196 Sum_probs=88.8
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
..+. +++|.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++.+. .+++++.+|......
T Consensus 77 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~ 148 (274)
T 3ajd_A 77 IVLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKD 148 (274)
T ss_dssp HHHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHH
T ss_pred HHhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcch
Confidence 4444 78899999999999999999999865447999999999999999999988654 589999999865432
Q ss_pred ----CCCCccEEEECCCC------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 223 ----EFAPYDAIHVGAAA------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 ----~~~~fD~Ii~~~~~------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..++||+|+++++. ..+.+.+.+.|||||++++....
T Consensus 149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 13689999998543 24557788899999999997643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=116.03 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
++++.+|||+|||+|.++..+++..++.++|+|+|+++.+++.+.++.+.. .+++++.+|..+.. ...+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------TTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------CCeEEEEcccCChhhhcccCC
Confidence 678899999999999999999998766679999999999988888776653 58999999987632 1236
Q ss_pred CccEEEECCCCch----hHHHHHhccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+||+|+++.+..+ +..++.+.|||||++++.+..
T Consensus 147 ~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 147 MVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 8999999877542 256789999999999997654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-13 Score=116.34 Aligned_cols=104 Identities=24% Similarity=0.280 Sum_probs=84.1
Q ss_pred HHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 144 ~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
.+...++++.+|||+|||+|..+..+++. .+|+++|+++.+++.|+++....+ .+++++.+|..+...+
T Consensus 26 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~ 94 (243)
T 3d2l_A 26 WVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-------RHVDFWVQDMRELELP 94 (243)
T ss_dssp HHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCGGGCCCS
T ss_pred HHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-------CceEEEEcChhhcCCC
Confidence 33334677899999999999999988875 589999999999999999987643 4789999998765444
Q ss_pred CCCccEEEECC-CCch---------hHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGA-AAPE---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~-~~~~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++||+|++.. ++++ +.+++.+.|||||++++.+.+
T Consensus 95 -~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 95 -EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp -SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 7899999976 5443 346788999999999997754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-13 Score=118.91 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=89.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++|++.+++ .++.++.+|+.+. +..++|
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~-~~~~~~ 187 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDV-ELKDVA 187 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGC-CCTTCE
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHc-CccCCc
Confidence 47788999999999999999999985 346999999999999999999988765 5789999999876 434689
Q ss_pred cEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+++.+. ..+...+.+.|||||++++...
T Consensus 188 D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 188 DRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCcccHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999999874 5677889999999999998664
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-13 Score=116.57 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc--CCCCEEEEEcCCCCCC---CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL--KEGSLSVHVGDGRKGW---PE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l--~~~~v~~~~gD~~~~~---~~ 223 (298)
++++.+|||+|||+|.++..+++.. +...|+|+|+++.+++.|++++........- +..|++++.+|+.+.+ .+
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 4677899999999999999999984 6679999999999999999988764110000 2268999999988632 33
Q ss_pred CCCccEEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+|.|+...+-+ .+.+.+.+.|||||++++....
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 47899998765433 5778899999999999996654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=124.08 Aligned_cols=101 Identities=28% Similarity=0.343 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++++..++. +++++.+|..+...+.++||+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-g--~~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D~~~~~~~~~~fD~ 301 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-G--AEVVGVEDDLASVLSLQKGLEANAL-------KAQALHSDVDEALTEEARFDI 301 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-T--CEEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTSCTTCCEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcchhhccccCCCeEE
Confidence 36789999999999999999987 3 6999999999999999999987653 478999999887665579999
Q ss_pred EEECCCCch-----------hHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+++.++++ +.+++.+.|||||++++..+..
T Consensus 302 Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 302 IVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp EEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred EEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 999987653 4578889999999999977653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=116.14 Aligned_cols=95 Identities=23% Similarity=0.208 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
+.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++. ++++++.+|..+.....++||+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~ 107 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-G--HQIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLL 107 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-T--CCEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEE
Confidence 789999999999999999987 3 58999999999999998772 578999999877544457999999
Q ss_pred ECCCCchh--------HHHHHhccccCcEEEEEECCC
Q 022372 232 VGAAAPEI--------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 232 ~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+..+++++ .+++.+.|||||++++.+...
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 108 AWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp EESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred ehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 98876543 478889999999999987554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=114.90 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=80.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|.++..+++. + .+|+++|+++.+++.++++. ++.+..+|..... ..++|
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~f 103 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA-G--FDVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAY 103 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc-C--CeEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcE
Confidence 4678899999999999999999987 3 69999999999999999875 2456677776655 45799
Q ss_pred cEEEECCCCchh--------HHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++..+++++ .+++.+.|||||++++.+...
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 999999987654 367889999999999987653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-13 Score=114.50 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=85.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
...++.+. ++++.+|||+|||+|.++..+++. .|..+|+|+|+++.+++.+.++..+.... .+.++++++++|..
T Consensus 17 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--~~~~~v~~~~~d~~ 91 (218)
T 3mq2_A 17 DAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQ-NPSRLVVALDADKSRMEKISAKAAAKPAK--GGLPNLLYLWATAE 91 (218)
T ss_dssp HHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHH-CTTEEEEEEESCGGGGHHHHHHHTSCGGG--TCCTTEEEEECCST
T ss_pred HHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhhhh--cCCCceEEEecchh
Confidence 34456665 788899999999999999999998 46689999999999888644433221110 12358999999998
Q ss_pred CCCCCCCCccEEEECCCC-----------chhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~-----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.....+. |.|++.... ..+.+++.+.|||||++++.++.
T Consensus 92 ~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (218)
T 3mq2_A 92 RLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL 142 (218)
T ss_dssp TCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred hCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc
Confidence 85544445 777754422 45568899999999999997653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-13 Score=125.78 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-------hccCCccC
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-------SAAAPLLK 206 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~-------~~~~~~l~ 206 (298)
.+.....+++.+. ++++.+|||+|||+|..+..++...+ ..+|+|||+++.+++.|+++... .+. .
T Consensus 158 ~~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl----~ 230 (438)
T 3uwp_A 158 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGK----K 230 (438)
T ss_dssp HHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB----C
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC----C
Confidence 3566778888886 89999999999999999999998754 35799999999999999886532 222 2
Q ss_pred CCCEEEEEcCCCCCCCCC--CCccEEEECCCCc-----hhHHHHHhccccCcEEEEE
Q 022372 207 EGSLSVHVGDGRKGWPEF--APYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 207 ~~~v~~~~gD~~~~~~~~--~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+++++++|+.+..... ..||+|+++..+. ....++++.|||||++|+.
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence 268999999998743221 3699999987642 2346788999999999983
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-13 Score=120.98 Aligned_cols=114 Identities=13% Similarity=0.188 Sum_probs=87.6
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+++.+. .++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|++++...+.. + ..+++++++|
T Consensus 71 ~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~--~-~~~v~~~~~d 141 (299)
T 3g2m_A 71 EAREFATRTG---PVSGPVLELAAGMGRLTFPFLDL-G--WEVTALELSTSVLAAFRKRLAEAPAD--V-RDRCTLVQGD 141 (299)
T ss_dssp HHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT-T--CCEEEEESCHHHHHHHHHHHHTSCHH--H-HTTEEEEECB
T ss_pred HHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHhhcccc--c-ccceEEEeCc
Confidence 3455566553 33459999999999999999987 3 68999999999999999998764310 0 0479999999
Q ss_pred CCCCCCCCCCccEEEECCC-C--------chhHHHHHhccccCcEEEEEECCC
Q 022372 217 GRKGWPEFAPYDAIHVGAA-A--------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~-~--------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+... .++||+|++... + ..+.+++.+.|||||++++.+.+.
T Consensus 142 ~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 142 MSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 987554 479999986532 2 244578899999999999988654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=115.46 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.+++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|+++....+ .+++++.+|..+...+ ++||
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~~~~~-~~fD 107 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER-G--YEVVGLDLHEEMLRVARRKAKERN-------LKIEFLQGDVLEIAFK-NEFD 107 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEESCGGGCCCC-SCEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHhcC-------CceEEEECChhhcccC-CCcc
Confidence 356789999999999999999987 3 689999999999999999987643 3689999998775444 6899
Q ss_pred EEEECCCC---------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA---------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++.... ..+.+++.+.|||||++++.+++
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 99986432 23447788999999999987765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=115.40 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|..+..+++. + .+|+++|+++.+++.++++....+... ....++.+..+|........++||
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D 103 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-G--YSVTGIDINSEAIRLAETAARSPGLNQ-KTGGKAEFKVENASSLSFHDSSFD 103 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHTTCCSCCS-SSSCEEEEEECCTTSCCSCTTCEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHhcCCcc-ccCcceEEEEecccccCCCCCcee
Confidence 678899999999999999999987 3 699999999999999999886654311 112478999999987655567999
Q ss_pred EEEECCCCch---------hHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPE---------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|++..++++ +.+++.+.|||||++++...
T Consensus 104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9999987643 45678899999999999643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-13 Score=121.18 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=81.1
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+++.+. ++++.+|||+|||+|.++..+++.. .+|+++|+|+.|++.|++++... .+.....+
T Consensus 33 ~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~ 98 (261)
T 3iv6_A 33 DRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADR---------CVTIDLLD 98 (261)
T ss_dssp HHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSS---------CCEEEECC
T ss_pred HHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhc---------cceeeeee
Confidence 3566677665 7889999999999999999999874 69999999999999999886432 12222222
Q ss_pred CCC--CCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEECCC
Q 022372 217 GRK--GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 217 ~~~--~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
... .....++||+|+++..+++ ..+.+.++| |||++++++..+
T Consensus 99 ~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 99 ITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp TTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred cccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 221 1111368999999988754 336677889 999999987643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.8e-13 Score=117.31 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++. .++.+..+|........++||+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~ 151 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDA 151 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcchhhCCCCCCceeE
Confidence 678899999999999999999975 4479999999999999998763 4678899998765444578999
Q ss_pred EEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|++..+ ....+++.+.|||||++++..++
T Consensus 152 v~~~~~-~~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 152 IIRIYA-PCKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp EEEESC-CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEeCC-hhhHHHHHHhcCCCcEEEEEEcC
Confidence 998766 45678999999999999997765
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=123.69 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=89.5
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. ++++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++.+.+. .+++++.+|.....
T Consensus 252 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~ 323 (450)
T 2yxl_A 252 SIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAP 323 (450)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCS
T ss_pred HHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcc
Confidence 34444 78899999999999999999999875447999999999999999999988654 58999999987754
Q ss_pred C--CCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 222 P--EFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ~--~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
. ..++||+|+++++. ..+.+.+.+.|||||++++....
T Consensus 324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2 22679999987654 23457788999999999986543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=112.78 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=81.9
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
+.+.....++.+|||+|||+|..+..+ + ..+++++|+++.+++.++++. .+++++.+|..+...
T Consensus 28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~ 91 (211)
T 2gs9_A 28 RALKGLLPPGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPF 91 (211)
T ss_dssp HHHHTTCCCCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCS
T ss_pred HHHHHhcCCCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCC
Confidence 334433558899999999999988777 2 138999999999999998875 367889999877555
Q ss_pred CCCCccEEEECCCCchh------HHHHHhccccCcEEEEEECCC
Q 022372 223 EFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+.++||+|++..+++++ .+++.+.|||||++++.+.+.
T Consensus 92 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 55789999999887654 478899999999999987654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=119.15 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+.+...+++.+. ..++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++++ .+++++.
T Consensus 20 ~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~------------~~~~~~~ 82 (261)
T 3ege_A 20 IRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAVVH------------PQVEWFT 82 (261)
T ss_dssp HHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCHHHHHSSCCC------------TTEEEEC
T ss_pred HHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCHHHHHHHHhc------------cCCEEEE
Confidence 456667777775 678899999999999999999973 37999999999998877543 3789999
Q ss_pred cCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|..+...+.++||+|++..++++ +.+++.+.|| ||++++...+
T Consensus 83 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 83 GYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp CCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 999875555579999999998754 4578999999 9977775543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=107.54 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|..+..+++. + .+++++|+++.+++.++++. .+++++.+|......+.++||
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~~D~~~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~D 109 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-G--HDVLGTDLDPILIDYAKQDF-----------PEARWVVGDLSVDQISETDFD 109 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTTSCCCCCCEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-C--CcEEEEcCCHHHHHHHHHhC-----------CCCcEEEcccccCCCCCCcee
Confidence 678899999999999999999987 3 69999999999999998874 357899999887544457899
Q ss_pred EEEEC-CCCc--------hhHHHHHhccccCcEEEEEECCC
Q 022372 229 AIHVG-AAAP--------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 229 ~Ii~~-~~~~--------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|++. ..++ .+.+.+.+.|||||++++.++..
T Consensus 110 ~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 110 LIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 99998 4443 34477889999999999977653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=111.45 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=82.8
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+++.+. +.++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++. +++++..+| ..
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d--~~ 70 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF-----------DSVITLSDP--KE 70 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC-----------TTSEEESSG--GG
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC--CC
Confidence 455565 7888999999999999999999885 49999999999999998871 688999998 22
Q ss_pred CCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++||+|++..+++++ .+++.+.|||||++++...
T Consensus 71 -~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 71 -IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp -SCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 234789999999988654 5889999999999999653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=117.96 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|++++...+. .+++++.+|........++||+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v 150 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFTPEPDSYDVI 150 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCCCCSSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC------ceEEEEEcChhhcCCCCCCEEEE
Confidence 57899999999999999988874 25999999999999999998765421 47899999987665555689999
Q ss_pred EECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++..++++ +.+++.+.|||||++++...
T Consensus 151 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 99988653 34678899999999999543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-14 Score=121.93 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=86.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+...+. ...++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.|++++...++. ++++++++|.
T Consensus 66 ~~~l~~~~~-~~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 136 (241)
T 3gdh_A 66 AEHIAGRVS-QSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIA-----DKIEFICGDF 136 (241)
T ss_dssp HHHHHHHHH-HHSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHhh-hccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCC-----cCeEEEECCh
Confidence 344444443 23478999999999999999999873 79999999999999999999886643 5899999998
Q ss_pred CCCCCCCCCccEEEECCCCchhH------HHHHhccccCcEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~ 256 (298)
.+.. ..++||+|+++.++.+.. .++.+.|||||.+++.
T Consensus 137 ~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 137 LLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp HHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred HHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 7654 347899999999876533 3467889999987764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=118.05 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHh---ccCCccCCCC-----------------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKS---AAAPLLKEGS----------------- 209 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~---~~~~~l~~~~----------------- 209 (298)
++.+|||+|||+|.++..+++.+ .+..+|+|+|+++.+++.|++++... +.. .+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT-----ARELERREQSERFGKPSYL 125 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH-----HHHHHHHHHHHHHCCHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc-----ccchhhhhhhhhcccccch
Confidence 56799999999999999999872 13368999999999999999887654 221 11
Q ss_pred --------EE-------------EEEcCCCCCCC-----CCCCccEEEECCCCc---------------hhHHHHHhccc
Q 022372 210 --------LS-------------VHVGDGRKGWP-----EFAPYDAIHVGAAAP---------------EIPQALIDQLK 248 (298)
Q Consensus 210 --------v~-------------~~~gD~~~~~~-----~~~~fD~Ii~~~~~~---------------~l~~~l~~~Lk 248 (298)
++ +.++|..+..+ ...+||+|+++.+.. .+.+++.+.||
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 205 (250)
T 1o9g_A 126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 205 (250)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC
Confidence 55 89999887542 334899999987531 45678899999
Q ss_pred cCcEEEEEECCC
Q 022372 249 PGGRMVIPVGNI 260 (298)
Q Consensus 249 pGG~Lvi~v~~~ 260 (298)
|||++++ +++.
T Consensus 206 pgG~l~~-~~~~ 216 (250)
T 1o9g_A 206 AHAVIAV-TDRS 216 (250)
T ss_dssp TTCEEEE-EESS
T ss_pred CCcEEEE-eCcc
Confidence 9999999 5543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=111.65 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=82.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+.+.+.....++.+|||+|||+|..+..+++.. .+++++|+++.+++.|+++. ++++++.+|..
T Consensus 28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~ 93 (239)
T 3bxo_A 28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----------PDATLHQGDMR 93 (239)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----------TTCEEEECCTT
T ss_pred HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----------CCCEEEECCHH
Confidence 34445554445778899999999999999999985 38999999999999998763 46889999988
Q ss_pred CCCCCCCCccEEEECC-CCch---------hHHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGA-AAPE---------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~-~~~~---------l~~~l~~~LkpGG~Lvi~v 257 (298)
.... .++||+|++.. ++++ +.+++.+.|||||++++..
T Consensus 94 ~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 94 DFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp TCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred Hccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7544 47899999644 4433 3477889999999999965
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-13 Score=116.84 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=81.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+...+. .++++.+|||+|||+|.++..+++. + .+|+|+|+++++++.++++ ++++.+|..
T Consensus 30 ~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~--------------~~~~~~d~~ 91 (240)
T 3dli_A 30 ARLRRYIP-YFKGCRRVLDIGCGRGEFLELCKEE-G--IESIGVDINEDMIKFCEGK--------------FNVVKSDAI 91 (240)
T ss_dssp HHHGGGGG-GTTTCSCEEEETCTTTHHHHHHHHH-T--CCEEEECSCHHHHHHHHTT--------------SEEECSCHH
T ss_pred HHHHHHHh-hhcCCCeEEEEeCCCCHHHHHHHhC-C--CcEEEEECCHHHHHHHHhh--------------cceeeccHH
Confidence 33333333 4678899999999999999999987 3 5799999999999998753 567777766
Q ss_pred CC--CCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEECCC
Q 022372 219 KG--WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 219 ~~--~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+. ....++||+|++..+++++ .+++.+.|||||++++.+++.
T Consensus 92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 92 EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp HHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred HHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 52 2234789999999887543 467889999999999987653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=126.41 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=88.7
Q ss_pred HHHHccCC--CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 143 QLLEENLK--PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 143 ~~L~~~l~--~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
..+. +. +|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|+.+.+. .++.++++|+...
T Consensus 109 ~~L~--~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~ 180 (479)
T 2frx_A 109 AALF--ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVF 180 (479)
T ss_dssp HHHT--TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTH
T ss_pred HHhC--cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHh
Confidence 4454 55 899999999999999999999976668999999999999999999988664 5899999998764
Q ss_pred CC-CCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 221 WP-EFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~-~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ..++||+|+++++.. .+.+++.+.|||||+|+++..
T Consensus 181 ~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 181 GAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp HHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 32 236899999976531 234667789999999999764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-12 Score=116.10 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=89.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC-ccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP-LLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~-~l~~~~v~~~~gD 216 (298)
...+++.+...++++.+|||+|||+|..+..+++. +..+++++|+++.+++.|+++....+... .....+++++++|
T Consensus 21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 44455555534457889999999999999999884 34699999999999999999886542100 0012478999999
Q ss_pred CCCCC----C--CCCCccEEEECCCCchh----------HHHHHhccccCcEEEEEECCC
Q 022372 217 GRKGW----P--EFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 217 ~~~~~----~--~~~~fD~Ii~~~~~~~l----------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..... . ..++||+|++..+++++ .+++.+.|||||++++.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 98753 2 23589999999888543 367889999999999988753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-13 Score=113.38 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=81.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
++++..+|||+|||+|-++..++.. .|..+|+++|+++.+++.+++++...+.. .++++ .|.....++ ++|
T Consensus 46 ~l~~~~~VLDlGCG~GplAl~l~~~-~p~a~~~A~Di~~~~leiar~~~~~~g~~-----~~v~~--~d~~~~~~~-~~~ 116 (200)
T 3fzg_A 46 NIKHVSSILDFGCGFNPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGKLKTT-----IKYRF--LNKESDVYK-GTY 116 (200)
T ss_dssp HSCCCSEEEEETCTTHHHHHHHHCS-SCCCEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEE--ECCHHHHTT-SEE
T ss_pred hcCCCCeEEEecCCCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----ccEEE--ecccccCCC-CCc
Confidence 3567789999999999999999887 46679999999999999999999886653 35665 565544333 789
Q ss_pred cEEEECCCCchhH------HHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAPEIP------QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+....++.+. ..+++.|||||.+|- ++
T Consensus 117 DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS-fp 152 (200)
T 3fzg_A 117 DVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS-FP 152 (200)
T ss_dssp EEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE-EE
T ss_pred ChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE-eC
Confidence 9999999987764 368899999988764 44
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=119.96 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||+|||+|.++..+++. +. .+|+|+|+++ +++.|+++++.++.. ++++++.+|..+...+.++||
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~v~gvD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSE-ILYQAMDIIRLNKLE-----DTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESST-HHHHHHHHHHHTTCT-----TTEEEEESCTTTSCCSCSCEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CC-CEEEEEChHH-HHHHHHHHHHHcCCC-----CcEEEEEeeHHHhcCCCCcEE
Confidence 577899999999999999999987 32 5999999997 999999999887653 689999999987654447899
Q ss_pred EEEECCC---C------chhHHHHHhccccCcEEE
Q 022372 229 AIHVGAA---A------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~---~------~~l~~~l~~~LkpGG~Lv 254 (298)
+|++... + ..+.+++.+.|||||+++
T Consensus 134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 9998762 2 234567789999999997
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=119.14 Aligned_cols=108 Identities=14% Similarity=0.059 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--------CC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--------WP 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--------~~ 222 (298)
++.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.|+++....+........++++.++|.... ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 57899999999998666665542 268999999999999999988764321000001367778877321 12
Q ss_pred CCCCccEEEECCCCc---------hhHHHHHhccccCcEEEEEECCC
Q 022372 223 EFAPYDAIHVGAAAP---------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~---------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+.++||+|++..+++ .+.+++.+.|||||++++.+++.
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 336899999887653 34578999999999999988763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=115.29 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCC-HHHHHHH---HHHHHHhccCCccCCCCEEEEEcCCCCCCCC-
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHI-PELVVSS---IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE- 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s-~~~l~~A---~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~- 223 (298)
.+++.+|||||||+|..+..+++. .+..+|+|+|++ +.+++.| +++..+.+. .++.++.+|.......
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~l~~~~ 94 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAESLPFEL 94 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTBCCGGG
T ss_pred CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHHhhhhc
Confidence 578889999999999999999976 466899999999 6777666 666555433 6899999998775321
Q ss_pred CCCccEEEECCCCc-----------hhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi 255 (298)
.+.+|.|+++.+.. .+.+++.+.|||||++++
T Consensus 95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 25677777776542 345789999999999998
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-13 Score=116.82 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=81.8
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
+..+..+++++.+|||+|||+|..+..+++.. .+|+++|+++.+++.|+++.. ..+++++++|..+..
T Consensus 47 ~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~ 114 (245)
T 3ggd_A 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT---------AANISYRLLDGLVPE 114 (245)
T ss_dssp HHHHTTTSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC---------CTTEEEEECCTTCHH
T ss_pred HHHHhhccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc---------ccCceEEECcccccc
Confidence 33343357788999999999999999999985 389999999999999998762 158999999987632
Q ss_pred CC-----CCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 222 PE-----FAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~-----~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
.. ..+||+|++...+++ +.+++.+.|||||++++..
T Consensus 115 ~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp HHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 124899999987743 4477889999999977743
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=115.13 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CCCC--C
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWPE--F 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----~~~~--~ 224 (298)
++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++...+.. ++++++++|..+ ..+. .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS-----DLIKVVKVPQKTLLMDALKEESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTTCSSTTTSTTCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCC-----ccEEEEEcchhhhhhhhhhcccC
Confidence 57799999999999999998875 3479999999999999999999886653 469999999764 2222 2
Q ss_pred CCccEEEECCCC
Q 022372 225 APYDAIHVGAAA 236 (298)
Q Consensus 225 ~~fD~Ii~~~~~ 236 (298)
++||+|+++.+.
T Consensus 139 ~~fD~i~~npp~ 150 (254)
T 2h00_A 139 IIYDFCMCNPPF 150 (254)
T ss_dssp CCBSEEEECCCC
T ss_pred CcccEEEECCCC
Confidence 589999999654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-13 Score=127.71 Aligned_cols=108 Identities=24% Similarity=0.244 Sum_probs=88.5
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. +++|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|+.+.+. . +.++++|.....
T Consensus 94 a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~ 164 (464)
T 3m6w_A 94 GVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALA 164 (464)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHH
T ss_pred HHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhh
Confidence 34454 78899999999999999999999876668999999999999999999998764 5 888999876532
Q ss_pred C-CCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 222 P-EFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ~-~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. ..++||+|+++++. ..+.+++.+.|||||+|+++..
T Consensus 165 ~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 165 EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 1 23689999998764 2345678889999999998654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=115.65 Aligned_cols=101 Identities=21% Similarity=0.174 Sum_probs=87.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+++|.+|||+|||+|+++..+|+.. . .+|+++|+++.+++.+++|++.+++. ++++++++|+.+.... +.|
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g-~-~~V~avD~np~a~~~~~~N~~~N~v~-----~~v~~~~~D~~~~~~~-~~~ 193 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYG-K-AKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNRDFPGE-NIA 193 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHT-C-CEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTTTCCCC-SCE
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhc-C-CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCcHHHhccc-cCC
Confidence 37899999999999999999999873 3 58999999999999999999998875 6899999999876544 789
Q ss_pred cEEEECCCC--chhHHHHHhccccCcEEEEE
Q 022372 228 DAIHVGAAA--PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 228 D~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~ 256 (298)
|.|+.+.+. .+..+.+.+.||+||.+.+.
T Consensus 194 D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 194 DRILMGYVVRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCCCcHHHHHHHHHHHcCCCCEEEEE
Confidence 999999765 45667888999999998764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-12 Score=113.46 Aligned_cols=103 Identities=21% Similarity=0.184 Sum_probs=80.9
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
.+.+...++++.+|||+|||+|..+..+++. + .+|+++|+++.+++.|+++.. .+ ++.+|.....
T Consensus 45 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~----------~~--~~~~d~~~~~ 109 (260)
T 2avn_A 45 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQER-G--FEVVLVDPSKEMLEVAREKGV----------KN--VVEAKAEDLP 109 (260)
T ss_dssp HHHHHHHCCSCCEEEEETCTTCHHHHHHHTT-T--CEEEEEESCHHHHHHHHHHTC----------SC--EEECCTTSCC
T ss_pred HHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHhhcC----------CC--EEECcHHHCC
Confidence 3333333557889999999999999999987 3 689999999999999987742 12 7888887655
Q ss_pred CCCCCccEEEECCCCch-------hHHHHHhccccCcEEEEEECC
Q 022372 222 PEFAPYDAIHVGAAAPE-------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~-------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...++||+|++...+.+ +.+++.+.|||||++++.+.+
T Consensus 110 ~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 110 FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 45578999999876433 347888999999999997765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=111.75 Aligned_cols=106 Identities=29% Similarity=0.315 Sum_probs=82.7
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|+++ .++.+..+|.
T Consensus 41 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~ 103 (227)
T 3e8s_A 41 DQAILLAIL--GRQPERVLDLGCGEGWLLRALADR-G--IEAVGVDGDRTLVDAARAA------------GAGEVHLASY 103 (227)
T ss_dssp HHHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT-T--CEEEEEESCHHHHHHHHHT------------CSSCEEECCH
T ss_pred cHHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC-C--CEEEEEcCCHHHHHHHHHh------------cccccchhhH
Confidence 344566665 456689999999999999999987 3 5899999999999999876 2445666665
Q ss_pred CCC----CCCCCCccEEEECCCCc-----hhHHHHHhccccCcEEEEEECCC
Q 022372 218 RKG----WPEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~----~~~~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+. .....+||+|++..+++ .+.+++.+.|||||++++...+.
T Consensus 104 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 104 AQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp HHHHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HhhcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 542 23335699999988765 56689999999999999987643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=119.82 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=81.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||+|||+|.++..+++. + ..+|+|+|++ ++++.|++++..++.. ++++++.+|..+...+.++||
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD 135 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLD-----HVVTIIKGKVEEVELPVEKVD 135 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCT-----TTEEEEESCTTTCCCSSSCEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCC-----CcEEEEECcHHHccCCCCceE
Confidence 457889999999999999999997 3 2699999999 5999999999887664 569999999988655557999
Q ss_pred EEEECCCC---------chhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAA---------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi 255 (298)
+|++.... +.+.+++.+.|||||+++.
T Consensus 136 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 136 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 99997531 2344677899999999873
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-11 Score=114.45 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+.....++........++.+|||+| |+|.++..+++. ++..+|+++|+++.+++.|++++...++ .+++++.
T Consensus 156 ~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~------~~v~~~~ 227 (373)
T 2qm3_A 156 ETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGY------EDIEIFT 227 (373)
T ss_dssp HHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTC------CCEEEEC
T ss_pred HHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEE
Confidence 3444444433221234678999999 999999999887 5657999999999999999999988654 4899999
Q ss_pred cCCCCCCCC--CCCccEEEECCCCc-----hhHHHHHhccccCcE-EEEEECC
Q 022372 215 GDGRKGWPE--FAPYDAIHVGAAAP-----EIPQALIDQLKPGGR-MVIPVGN 259 (298)
Q Consensus 215 gD~~~~~~~--~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~-Lvi~v~~ 259 (298)
+|+.+.++. .++||+|+++.+.. .+.+++.+.|||||+ +++.+..
T Consensus 228 ~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 228 FDLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp CCTTSCCCTTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred ChhhhhchhhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence 999874432 35899999998763 455788999999994 4666654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=119.64 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=89.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++...+. +++++.+|.
T Consensus 185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~ 254 (343)
T 2pjd_A 185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNV 254 (343)
T ss_dssp HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECST
T ss_pred HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEccc
Confidence 445566554 445679999999999999999998 4667999999999999999999987553 356788998
Q ss_pred CCCCCCCCCccEEEECCCCch-----------hHHHHHhccccCcEEEEEECCC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.... .++||+|+++.+++. +.+++.+.|||||++++..+..
T Consensus 255 ~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 255 FSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp TTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred cccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 7643 368999999988752 3477889999999999976543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=116.23 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=80.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++. +. .+|+|+|++ .+++.|++++..++.. ++++++.+|..+...+.++||
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~v~~vD~s-~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D 107 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMS-SIIEMAKELVELNGFS-----DKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESS-THHHHHHHHHHHTTCT-----TTEEEEESCTTTSCCSSSCEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CC-CEEEEEChH-HHHHHHHHHHHHcCCC-----CCEEEEECchhhccCCCCccc
Confidence 567889999999999999999986 32 599999999 5999999999887654 679999999987654447899
Q ss_pred EEEECCCC---------chhHHHHHhccccCcEEE
Q 022372 229 AIHVGAAA---------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~~---------~~l~~~l~~~LkpGG~Lv 254 (298)
+|++.... ..+..++.+.|||||+++
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 99987532 234466779999999997
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-13 Score=118.21 Aligned_cols=105 Identities=22% Similarity=0.142 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC----------------------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK---------------------- 206 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~---------------------- 206 (298)
..++.+|||||||+|.++..++.. +. .+|+|+|+|+.+++.|+++++..... +.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~-~~-~~v~g~D~s~~~l~~a~~~~~~~~~~--~d~s~~~~~~~~~~~~~~~~~~~~ 128 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD-SF-QDITLSDFTDRNREELEKWLKKEPGA--YDWTPAVKFACELEGNSGRWEEKE 128 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG-TE-EEEEEEESCHHHHHHHHHHHHTCTTC--CCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh-hh-cceeeccccHHHHHHHHHHHhcCCCc--ccchHHHHHHHhcCCCCcchhhHH
Confidence 567889999999999887766654 22 47999999999999999887543100 00
Q ss_pred ---CCCEE-EEEcCCCCCCC----CCCCccEEEECCCCchh----------HHHHHhccccCcEEEEEE
Q 022372 207 ---EGSLS-VHVGDGRKGWP----EFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 207 ---~~~v~-~~~gD~~~~~~----~~~~fD~Ii~~~~~~~l----------~~~l~~~LkpGG~Lvi~v 257 (298)
..++. ++.+|..+..+ ..++||+|++..+++++ .+++.++|||||++++..
T Consensus 129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01344 88999887422 23689999999887653 367889999999999975
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=118.22 Aligned_cols=107 Identities=21% Similarity=0.154 Sum_probs=84.0
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..++.+|||+|||+|.++..+++. + ..+|+|+|.++ +++.|+++++.+++. ++++++.+|..+
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~-----~~v~~~~~d~~~ 110 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLT-----DRIVVIPGKVEE 110 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCT-----TTEEEEESCTTT
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCC-----CcEEEEEcchhh
Confidence 3444444 567899999999999999999986 3 25999999996 889999998887654 689999999887
Q ss_pred CCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v 257 (298)
...+ ++||+|++..... .....+.+.|||||++++..
T Consensus 111 ~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 111 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5433 6899999987643 22345679999999998643
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=124.61 Aligned_cols=109 Identities=24% Similarity=0.220 Sum_probs=89.4
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. +++|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|+.+.+. .++.++++|.....
T Consensus 98 ~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l~ 169 (456)
T 3m4x_A 98 GTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAELV 169 (456)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHHH
T ss_pred HHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhh
Confidence 34444 78899999999999999999999876668999999999999999999998765 58999999876532
Q ss_pred C-CCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 222 P-EFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ~-~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. ..++||+|+++++.. .+.+.+.+.|||||+|+++..
T Consensus 170 ~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 170 PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 236899999998731 345677889999999998664
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-12 Score=117.50 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=86.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+.+.+. ...++.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++|+..+++. ..+++++++|+.
T Consensus 142 ~~l~~~~~-~~~~~~~VLDlgcGtG~~sl~la~~-g--a~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~ 213 (332)
T 2igt_A 142 EWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAA-G--AEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAM 213 (332)
T ss_dssp HHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHH
T ss_pred HHHHHHHH-hcCCCCcEEEcccccCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHH
Confidence 34444443 1356789999999999999999986 3 49999999999999999999887652 125999999987
Q ss_pred CCCCC----CCCccEEEECCCC----------------chhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPE----FAPYDAIHVGAAA----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~----~~~fD~Ii~~~~~----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.... .++||+|+++.+. ..+.+.+.+.|||||.+++....
T Consensus 214 ~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 214 KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 64321 3689999998773 23457778999999998876643
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-12 Score=116.01 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
..+.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++++..... .+..++++++.+|+..... ..++||
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~--~~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhhCCCCee
Confidence 356899999999999999998863 447999999999999999998865311 1234789999999875322 236899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++... .++.+.+.+.|||||++++..++
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99998764 35778999999999999997654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-12 Score=104.74 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=79.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+.....++.+|||+|||+|.++..+++.. +|+|+|+++.+++. . ++++++++|.
T Consensus 10 ~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~------~---------~~~~~~~~d~ 70 (170)
T 3q87_B 10 TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES------H---------RGGNLVRADL 70 (170)
T ss_dssp HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT------C---------SSSCEEECST
T ss_pred HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc------c---------cCCeEEECCh
Confidence 344555565222667899999999999999999863 89999999999987 1 5788999999
Q ss_pred CCCCCCCCCccEEEECCCCc---------------hhHHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPEFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+..++ ++||+|+++.++. .+.+.+.+.| |||++++...
T Consensus 71 ~~~~~~-~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 71 LCSINQ-ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp TTTBCG-GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred hhhccc-CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 885444 7899999998764 3457788888 9999999664
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=114.61 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|..+..+++.. |..+++++|+ +.+++.|++++...++. ++++++.+|..+..+. .||
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~-----~~v~~~~~d~~~~~p~--~~D 270 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLA-----DRCEILPGDFFETIPD--GAD 270 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTTCCCS--SCS
T ss_pred CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcC-----CceEEeccCCCCCCCC--Cce
Confidence 5677899999999999999999985 6679999999 99999999999876653 6899999999854443 799
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
+|++...+++ +.+++.+.|||||++++.
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999988753 557888999999999984
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=115.60 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.|++++...+.. ++++++.+|..+..+. .||
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~--~~D 250 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA-----DRVTVAEGDFFKPLPV--TAD 250 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCSC--CEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCC-----CceEEEeCCCCCcCCC--CCC
Confidence 5678899999999999999999985 6679999999 99999999999876543 5899999998764443 499
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|++..++++ +.+++.+.|||||++++...
T Consensus 251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999988753 45778899999999988543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=117.66 Aligned_cols=109 Identities=26% Similarity=0.370 Sum_probs=87.9
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+...+. .+++.+|||+|||+|..+..+++.. ++++|+++|+++.+++.+++++.+.+. +++++.+|...
T Consensus 237 ~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~~ 306 (429)
T 1sqg_A 237 GCMTWLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRY 306 (429)
T ss_dssp THHHHHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTC
T ss_pred HHHHHcC--CCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchhh
Confidence 3445554 7889999999999999999999986 448999999999999999999988653 46889999876
Q ss_pred CC--CCCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 220 GW--PEFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~--~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ...++||+|+++++.. .+.+.+.+.|||||++++...
T Consensus 307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 53 2236899999977541 345778899999999999763
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-13 Score=125.91 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=106.8
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+...+++.+. . .+.+|||+|||+|.++..+|+.. .+|+++|+++++++.|++|+..++. ++++++.+|
T Consensus 202 l~~~~~~~~~--~-~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d 269 (369)
T 3bt7_A 202 MLEWALDVTK--G-SKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMA 269 (369)
T ss_dssp HHHHHHHHTT--T-CCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCC
T ss_pred HHHHHHHHhh--c-CCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECC
Confidence 3444444443 2 35789999999999999999864 6999999999999999999988664 589999999
Q ss_pred CCCCC---CCC-------------CCccEEEECCCCchhHHHHHhccccCcEEEEEECCCc---eeEEEEEEcCCCCeEE
Q 022372 217 GRKGW---PEF-------------APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF---QDLKVVDKNQDGSLSI 277 (298)
Q Consensus 217 ~~~~~---~~~-------------~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~~---q~~~~~~~~~~g~~~~ 277 (298)
+.+.. ... .+||+|+++++...+.+.+.+.|+++|++++...++. ..+..+. . .+..
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~---~-~y~~ 345 (369)
T 3bt7_A 270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLS---Q-THKV 345 (369)
T ss_dssp SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH---H-HEEE
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh---h-CcEE
Confidence 86532 111 3799999999887777888888999999988665532 1122121 1 3888
Q ss_pred EEeeeEEEeecccchh
Q 022372 278 WSETSVRYVPLTSRDA 293 (298)
Q Consensus 278 ~~l~~v~fvPl~~~~~ 293 (298)
+.+.++..+|-|...+
T Consensus 346 ~~~~~~D~FP~T~HvE 361 (369)
T 3bt7_A 346 ERLALFDQFPYTHHMQ 361 (369)
T ss_dssp EEEEEECCSTTSSCCE
T ss_pred EEEEeeccCCCCCcEE
Confidence 8899999999998766
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=110.47 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=84.7
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCC---cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGT---GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~Gs---G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
..++++.+.. ..+..+|||+|||+ |.++..+.+. .+..+|+++|+++.+++.|++++.. .++++++.
T Consensus 65 ~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~ 134 (274)
T 2qe6_A 65 LVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFT 134 (274)
T ss_dssp HHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEE
T ss_pred HHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEE
Confidence 4444555531 22347999999999 9988777666 4668999999999999999998732 15899999
Q ss_pred cCCCCC-----------CCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEECC
Q 022372 215 GDGRKG-----------WPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 215 gD~~~~-----------~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|..+. ..+..+||+|++...+++ +.+++.+.|||||+|++....
T Consensus 135 ~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 135 ADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred eeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 998752 122247999999988754 346888999999999997643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-12 Score=118.10 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++. +. .+|+|+|++ .+++.|+++++.+++. ++++++.+|..+...+ ++||
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~~D 131 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMADHARALVKANNLD-----HIVEVIEGSVEDISLP-EKVD 131 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TC-SEEEEEESS-TTHHHHHHHHHHTTCT-----TTEEEEESCGGGCCCS-SCEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CC-CEEEEEccH-HHHHHHHHHHHHcCCC-----CeEEEEECchhhcCcC-Ccce
Confidence 567899999999999999999997 43 499999999 9999999999887764 6799999999876554 7899
Q ss_pred EEEECCCC---------chhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAA---------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++... ..+.+.+.+.|||||++++
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 99996532 2345677899999999976
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=118.02 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~ 226 (298)
.+++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+..++++++.+|+..... ..++
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~--gl~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEECCHHHHHHhccCCC
Confidence 3456899999999999999999873 457999999999999999999865310 0223689999999865321 2368
Q ss_pred ccEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
||+|+++... ..+.+.+.+.|||||++++..+.
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999998752 35668899999999999996544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=112.67 Aligned_cols=108 Identities=20% Similarity=0.154 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-----------CccC-----------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-----------PLLK----------- 206 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-----------~~l~----------- 206 (298)
..++.+|||+|||+|..+..+++.. . .+|+++|+++.+++.|++++...... ..-+
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 3567899999999999999888763 3 58999999999999999887542100 0000
Q ss_pred -CCCE-EEEEcCCCCCCC-CC---CCccEEEECCCCc----h------hHHHHHhccccCcEEEEEEC
Q 022372 207 -EGSL-SVHVGDGRKGWP-EF---APYDAIHVGAAAP----E------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 207 -~~~v-~~~~gD~~~~~~-~~---~~fD~Ii~~~~~~----~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
..++ +++.+|..+..+ .. ++||+|++..+++ + +.+++.+.|||||++++...
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 0127 899999887533 33 6899999998876 3 33678899999999999663
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=114.41 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=78.8
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-----------CccC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-----------PLLK 206 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-----------~~l~ 206 (298)
...+.+.+.....++.+|||+|||+|..+..++.. ...+|+|+|+++.+++.|++++...... ...+
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 44555655422347789999999999954444443 2259999999999999998865421000 0000
Q ss_pred -------------CCCEEEEEcCCCCCCC------CCCCccEEEECCCCch----h------HHHHHhccccCcEEEEE
Q 022372 207 -------------EGSLSVHVGDGRKGWP------EFAPYDAIHVGAAAPE----I------PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 207 -------------~~~v~~~~gD~~~~~~------~~~~fD~Ii~~~~~~~----l------~~~l~~~LkpGG~Lvi~ 256 (298)
...++++.+|+....+ +.++||+|++..++++ + .+++.++|||||++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0125677788876221 2256999999998766 3 26788999999999995
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=116.49 Aligned_cols=107 Identities=21% Similarity=0.181 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~f 227 (298)
+++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|++++..... ....++++++.+|+..... ..++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCce
Confidence 56789999999999999999986 3457999999999999999998743211 0223789999999876432 24789
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++... ..+.+.+.+.|||||++++..++
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999998753 24567889999999999997665
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=116.64 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHc---CCCcEE--EEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE--EcCCCCCC-
Q 022372 150 KPGMHALDIGSGTGYLTACFALMV---GPQGRA--VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH--VGDGRKGW- 221 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~---g~~~~V--~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~--~gD~~~~~- 221 (298)
.++.+|||||||+|.++..+++.+ .+..+| +++|+|++|++.|++++.... +..++.+. .++.....
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-----~~~~v~~~~~~~~~~~~~~ 125 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-----NLENVKFAWHKETSSEYQS 125 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-----SCTTEEEEEECSCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-----CCCcceEEEEecchhhhhh
Confidence 466799999999998765443221 244544 999999999999999876431 11455554 34432211
Q ss_pred -----CCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 222 -----PEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 -----~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.++||+|++..+++++ .+++.++|||||++++....
T Consensus 126 ~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 126 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 134789999999998765 47889999999999996543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=105.62 Aligned_cols=94 Identities=19% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
++++.+|||+|||+|..+..+++..++ .++|+|+|+++.. . .++++++++|..+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~------~~~v~~~~~d~~~~~~~~~~~ 82 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P------IPNVYFIQGEIGKDNMNNIKN 82 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C------CTTCEEEECCTTTTSSCCC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C------CCCceEEEccccchhhhhhcc
Confidence 578899999999999999999998643 5899999999831 1 157889999987653
Q ss_pred -------------------CCCCCccEEEECCCCch-----------------hHHHHHhccccCcEEEEEECC
Q 022372 222 -------------------PEFAPYDAIHVGAAAPE-----------------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 -------------------~~~~~fD~Ii~~~~~~~-----------------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.++||+|+++...+. +.+.+.+.|||||++++.+..
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 23368999999876532 345688999999999997643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=121.02 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.....+.+.+.. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..++. . ++++.+
T Consensus 276 ~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~ 344 (425)
T 2jjq_A 276 YQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVA 344 (425)
T ss_dssp HHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEEC
T ss_pred HHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEEC
Confidence 334444444432 5678899999999999999999873 5999999999999999999987653 4 899999
Q ss_pred CCCCCCCCCCCccEEEECCCCch----hHHHHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecc
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLT 289 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~ 289 (298)
|..+..+. +||+|+++.+... +.+.+ +.|+|||.++++.+... ..+..+ . ++.+.+.++.++|-|
T Consensus 345 d~~~~~~~--~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvsc~p~tlarDl~~l----~--y~l~~~~~~DmFP~T 415 (425)
T 2jjq_A 345 SDREVSVK--GFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVSCNPETFARDVKML----D--YRIDEIVALDMFPHT 415 (425)
T ss_dssp CTTTCCCT--TCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEESCHHHHHHHHHHS----S--CCEEEEEEECCSTTS
T ss_pred ChHHcCcc--CCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEECChHHHHhHHhhC----e--EEEEEEEEECcCCCC
Confidence 99876543 8999999988532 34444 45899999999765432 111111 1 667778899999999
Q ss_pred cchh
Q 022372 290 SRDA 293 (298)
Q Consensus 290 ~~~~ 293 (298)
...+
T Consensus 416 ~HvE 419 (425)
T 2jjq_A 416 PHVE 419 (425)
T ss_dssp SCCE
T ss_pred ceEE
Confidence 8765
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=112.92 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=88.3
Q ss_pred HHHHHHHHccC--CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 139 ATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 139 ~~~l~~L~~~l--~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
..+++.+. . .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.|++++...+.. ++++++.+|
T Consensus 153 ~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~-----~~v~~~~~d 223 (335)
T 2r3s_A 153 QLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVA-----SRYHTIAGS 223 (335)
T ss_dssp HHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCG-----GGEEEEESC
T ss_pred HHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCC-----cceEEEecc
Confidence 34555554 4 678899999999999999999985 55799999999 9999999998876653 579999999
Q ss_pred CCCCCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
..+...+ +.||+|++..++++ +.+++.+.|||||++++..
T Consensus 224 ~~~~~~~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 224 AFEVDYG-NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp TTTSCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCCC-CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 8874333 35999999887754 3467889999999988854
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=113.86 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~f 227 (298)
.+..+|||||||+|..+..+++.. |..+++++|+ +.+++.|++++...+.. ++++++.+|..+.. .+ ++|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~p-~~~ 249 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGS-----ERIHGHGANLLDRDVPFP-TGF 249 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTG-----GGEEEEECCCCSSSCCCC-CCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcc-----cceEEEEccccccCCCCC-CCc
Confidence 456799999999999999999985 6679999999 99999999998765543 58999999998752 23 689
Q ss_pred cEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 228 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 228 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
|+|++...+++ +.+++.+.|||||++++.-
T Consensus 250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999888753 3577889999999999843
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=104.35 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=76.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++.+|||+|||+|..+..+++..++..+++++|+++ +++. .++++..+|..+..
T Consensus 19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~ 81 (180)
T 1ej0_A 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHH
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhh
Confidence 367889999999999999999999876667999999998 5421 57899999987652
Q ss_pred --CCCCCccEEEECCCCc-----------------hhHHHHHhccccCcEEEEEECC
Q 022372 222 --PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.++||+|+++.+++ .+.+++.+.|||||++++....
T Consensus 82 ~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3346899999987653 4557888999999999997654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=112.60 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=82.2
Q ss_pred CCC-ccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022372 128 YNA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 206 (298)
Q Consensus 128 ~~~-~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~ 206 (298)
+|+ .+..+.+...+++.+. +.++++|||||||+|+++..+++.. .+|+++|+++++++.+++++...
T Consensus 28 ~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~------- 95 (295)
T 3gru_A 28 LGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELY------- 95 (295)
T ss_dssp --CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHC-------
T ss_pred cCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccC-------
Confidence 445 5567888999999887 8889999999999999999999984 69999999999999999988631
Q ss_pred CCCEEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 207 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 207 ~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
++++++++|+.+...+..+||+|+++.+...
T Consensus 96 -~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 96 -NNIEIIWGDALKVDLNKLDFNKVVANLPYQI 126 (295)
T ss_dssp -SSEEEEESCTTTSCGGGSCCSEEEEECCGGG
T ss_pred -CCeEEEECchhhCCcccCCccEEEEeCcccc
Confidence 6899999999885544467999999988643
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=112.71 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=86.6
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..+ .+|||+|||+|..+..+++.. |..+++++|+ +.+++.|++++...+.. ++++++.+|..+
T Consensus 159 ~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~ 228 (334)
T 2ip2_A 159 EIPRLLD--FRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAG-----ERVSLVGGDMLQ 228 (334)
T ss_dssp HHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHT-----TSEEEEESCTTT
T ss_pred HHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCC-----CcEEEecCCCCC
Confidence 3444443 455 899999999999999999985 5679999999 99999999998776543 689999999987
Q ss_pred CCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v 257 (298)
..+ ++||+|++...++ .+.+++.+.|||||++++.-
T Consensus 229 ~~~--~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 229 EVP--SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp CCC--SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCC--CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 433 5799999998875 34578889999999999853
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=112.59 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=87.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||||||+|..+..+++.. |..+++++|+ +.+++.|++++...+.. ++++++.+|..
T Consensus 180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 250 (359)
T 1x19_A 180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIY 250 (359)
T ss_dssp HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCT-----TTEEEEECCTT
T ss_pred HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCC-----CCEEEEeCccc
Confidence 34455544 5678899999999999999999985 6679999999 99999999999876543 56999999998
Q ss_pred CCCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
+...+ .+|+|++...+++ +.+++.+.|||||++++..
T Consensus 251 ~~~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 251 KESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp TSCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred cCCCC--CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 75333 3499999988754 3467889999999997744
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=114.05 Aligned_cols=107 Identities=24% Similarity=0.289 Sum_probs=87.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+++.+. ++++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.|++++...+.. ++++++.+|..+.
T Consensus 175 l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~ 245 (360)
T 1tw3_A 175 PAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS-----DRVDVVEGDFFEP 245 (360)
T ss_dssp HHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT-----TTEEEEECCTTSC
T ss_pred HHHhCC--CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCC-----CceEEEeCCCCCC
Confidence 344443 5678899999999999999999985 6679999999 99999999999876543 5899999998765
Q ss_pred CCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+. .||+|++...+++ +.+++.+.|||||++++...
T Consensus 246 ~~~--~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 246 LPR--KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp CSS--CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCC--CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 443 4999999888743 45778899999999998543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=112.98 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|..+..+++.. |..+++++|+ +.+++.|++++...+.. ++++++.+|..+..+. +||+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~p~--~~D~ 238 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLS-----GRAQVVVGSFFDPLPA--GAGG 238 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCCC--SCSE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcC-----cCeEEecCCCCCCCCC--CCcE
Confidence 456799999999999999999985 6679999999 99999999998876653 6899999999854443 7999
Q ss_pred EEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 230 IHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 230 Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
|++..++++ +.+++.+.|||||++++.-
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999988753 4467889999999999854
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-12 Score=114.13 Aligned_cols=107 Identities=20% Similarity=0.159 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD 228 (298)
.++.+|||+|||+|..+..+++. .+..+|+++|+++++++.|++++..... .+..++++++.+|+.+.. ...++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~--~~~~~rv~v~~~Da~~~l~~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHhhCCCCce
Confidence 45689999999999999999987 3557999999999999999999865210 022378999999986532 1236899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++... .++.+.+.+.|||||++++....
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99998764 34568899999999999997643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=114.99 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=84.3
Q ss_pred CCC-CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCC
Q 022372 149 LKP-GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFA 225 (298)
Q Consensus 149 l~~-g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~ 225 (298)
..+ +.+|||||||+|..+..+++.. |..+++++|+ +.+++.|++++...+.. ++++++.+|..+.. ++ +
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~-~ 247 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLG-----GRVEFFEKNLLDARNFEG-G 247 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCG-----GGEEEEECCTTCGGGGTT-C
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCC-----CceEEEeCCcccCcccCC-C
Confidence 445 7899999999999999999985 6689999999 88999999998876543 57999999988764 33 5
Q ss_pred CccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 226 PYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 226 ~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
.||+|++...+++ +.+++.+.|||||++++.-
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6999999988753 4467889999999999843
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=112.43 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...+.. +++++
T Consensus 12 ~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~ 81 (285)
T 1zq9_A 12 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVA-----SKLQV 81 (285)
T ss_dssp CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTG-----GGEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEE
Confidence 46777888888886 7788999999999999999999984 59999999999999999987654321 58999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCc
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
+.+|+.+... ..||+|+++.+..
T Consensus 82 ~~~D~~~~~~--~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 82 LVGDVLKTDL--PFFDTCVANLPYQ 104 (285)
T ss_dssp EESCTTTSCC--CCCSEEEEECCGG
T ss_pred EEcceecccc--hhhcEEEEecCcc
Confidence 9999986533 3799999987763
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-12 Score=114.00 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+.+.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+..++++++.+|+..... ..++||
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhhCCCCce
Confidence 455899999999999999999873 447999999999999999998865210 1223789999999765322 236899
Q ss_pred EEEECCCC-----------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~-----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++... .++.+.+.+.|||||++++..++
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99987643 24568899999999999997655
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=114.26 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..+.+.+.++... .+++.+|||+|||+|.++..++... +.++|+|+|+++.+++.|++|+...++. +++++
T Consensus 202 l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~-----~~i~~ 272 (373)
T 3tm4_A 202 LKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVL-----DKIKF 272 (373)
T ss_dssp CCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCG-----GGCEE
T ss_pred ccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCC-----CceEE
Confidence 3455555555544 6788999999999999999999884 4458999999999999999999887654 58999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.++|..+.....++||+|+++.+.. .+.+.+.+.| ||.+++...+
T Consensus 273 ~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~ 331 (373)
T 3tm4_A 273 IQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE 331 (373)
T ss_dssp EECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred EECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 9999987655557899999998732 2335566666 5666665554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-12 Score=115.19 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc-------CCCCEEEEEcCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL-------KEGSLSVHVGDGRKGW 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l-------~~~~v~~~~gD~~~~~ 221 (298)
..++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++ ... ..+ ..++++++.+|+.+..
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~--~~l~~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KID--NGLLEAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTT--TTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhc--cccccccccCCCCcEEEEECchHHHh
Confidence 355689999999999999999987 3 479999999999999999987 320 012 2378999999976432
Q ss_pred CCCCCccEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 222 PEFAPYDAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...++||+|+++... .++.+.+.+.|||||++++..+.
T Consensus 148 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 148 KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp HHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 113689999998863 34568899999999999997543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=115.33 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.+|++|||||||+|.++..+|+. |. .+|+++|.++ +++.|+++++.+++. ++|+++.++..+...+ ++||+
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a-GA-~~V~ave~s~-~~~~a~~~~~~n~~~-----~~i~~i~~~~~~~~lp-e~~Dv 152 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA-GA-RRVYAVEASA-IWQQAREVVRFNGLE-----DRVHVLPGPVETVELP-EQVDA 152 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECST-THHHHHHHHHHTTCT-----TTEEEEESCTTTCCCS-SCEEE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh-CC-CEEEEEeChH-HHHHHHHHHHHcCCC-----ceEEEEeeeeeeecCC-ccccE
Confidence 46889999999999999888886 44 5899999986 889999999998875 7899999999876544 68999
Q ss_pred EEECCC---C------chhHHHHHhccccCcEEE
Q 022372 230 IHVGAA---A------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 230 Ii~~~~---~------~~l~~~l~~~LkpGG~Lv 254 (298)
|++... + +.+.....++|||||+++
T Consensus 153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 153 IVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp EECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred EEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 998432 1 234455668999999986
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.1e-12 Score=119.92 Aligned_cols=142 Identities=21% Similarity=0.256 Sum_probs=105.2
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..++. .+++++.+|
T Consensus 274 l~~~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d 342 (433)
T 1uwv_A 274 MVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHEN 342 (433)
T ss_dssp HHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECC
T ss_pred HHHHHHHhhc--CCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECC
Confidence 4445555554 6678899999999999999999873 6999999999999999999987654 589999999
Q ss_pred CCCCCC----CCCCccEEEECCCCchh---HHHHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEee
Q 022372 217 GRKGWP----EFAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVP 287 (298)
Q Consensus 217 ~~~~~~----~~~~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvP 287 (298)
..+... ..++||+|+++.+.... .+.+. .++|++.++++..... ..+..+ .+..+..+.+.++.++|
T Consensus 343 ~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l---~~~Gy~~~~~~~~d~Fp 418 (433)
T 1uwv_A 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPATLARDSEAL---LKAGYTIARLAMLDMFP 418 (433)
T ss_dssp TTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHH---HHTTCEEEEEEEECCST
T ss_pred HHHHhhhhhhhcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEECChHHHHhhHHHH---HHCCcEEEEEEEeccCC
Confidence 987432 23579999999886433 33333 3689998888765432 112222 12347778888899999
Q ss_pred cccchh
Q 022372 288 LTSRDA 293 (298)
Q Consensus 288 l~~~~~ 293 (298)
-|...+
T Consensus 419 ~t~HvE 424 (433)
T 1uwv_A 419 HTGHLE 424 (433)
T ss_dssp TSSCCE
T ss_pred CCCeEE
Confidence 888765
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=119.89 Aligned_cols=100 Identities=18% Similarity=0.115 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..+++. ++++++.+|..+...+ ++||
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~-----~~v~~~~~d~~~~~~~-~~fD 226 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLT-----DRIVVIPGKVEEVSLP-EQVD 226 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCT-----TTEEEEESCTTTCCCS-SCEE
T ss_pred hcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCC-----CcEEEEECchhhCccC-CCeE
Confidence 457789999999999999999885 336999999998 999999999887654 6899999999874333 5899
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
+|+++....+ ....+.+.|||||++++..
T Consensus 227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999876322 2245578999999998533
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.8e-11 Score=108.34 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=72.4
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
..+. +++|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++|+++.+. .+++++.+|+.+...
T Consensus 96 ~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~ 167 (309)
T 2b9e_A 96 MLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSP 167 (309)
T ss_dssp HHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCT
T ss_pred HHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCc
Confidence 3444 78899999999999999999999876668999999999999999999988654 689999999876533
Q ss_pred CC---CCccEEEECCCC
Q 022372 223 EF---APYDAIHVGAAA 236 (298)
Q Consensus 223 ~~---~~fD~Ii~~~~~ 236 (298)
.. .+||+|+++++.
T Consensus 168 ~~~~~~~fD~Vl~D~Pc 184 (309)
T 2b9e_A 168 SDPRYHEVHYILLDPSC 184 (309)
T ss_dssp TCGGGTTEEEEEECCCC
T ss_pred cccccCCCCEEEEcCCc
Confidence 21 479999998653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-12 Score=115.60 Aligned_cols=100 Identities=26% Similarity=0.270 Sum_probs=81.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCccEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~fD~I 230 (298)
.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++++... ..++++++.+|+.+... ..++||+|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHHhhccCCCCCEE
Confidence 499999999999999999974 5579999999999999999987432 23689999999876432 23689999
Q ss_pred EECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++... .++.+.+.+.|||||++++..+.
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 997542 24568899999999999997753
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=103.00 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=83.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++... +.+..+|||+|| ||.|+.+|+.. +++|+++|.+++..+.|++++++.+.. ..++++++.+|.
T Consensus 20 ~~~~L~~~---l~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda 89 (202)
T 3cvo_A 20 EAEALRMA---YEEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDI 89 (202)
T ss_dssp HHHHHHHH---HHHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCC
T ss_pred HHHHHHHH---hhCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCc
Confidence 34445442 456689999998 69999999852 589999999999999999999987640 016899999997
Q ss_pred CCC--------------C----------CCCCCccEEEECCCCc-hhHHHHHhccccCcEEEE
Q 022372 218 RKG--------------W----------PEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~--------------~----------~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi 255 (298)
.+. + ...++||+|++++... .....+.++|+|||++++
T Consensus 90 ~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 90 GPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp SSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred hhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence 543 1 1236899999999865 344557799999999975
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.24 E-value=8.5e-12 Score=112.16 Aligned_cols=103 Identities=13% Similarity=-0.063 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
+.+.+|||+|||+|+.+..+++. + .+|+++|+++++++.|++++..... .+..++++++.+|+.... ++||+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~--~~~~~rv~~~~~D~~~~~---~~fD~ 142 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQLLDLDI---KKYDL 142 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHH--HHTCTTEEEESSGGGSCC---CCEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcc--ccCCCeEEEEechHHHHH---hhCCE
Confidence 34579999999999999999887 4 7999999999999999987643100 022368999999998764 68999
Q ss_pred EEECCCCch-hHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAAPE-IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+++..-+. ..+.+.+.|||||++++..++.
T Consensus 143 Ii~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 143 IFCLQEPDIHRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp EEESSCCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred EEECCCChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 999975543 5789999999999999976553
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-12 Score=115.06 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
.+++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+..++++++.+|+..... ..++|
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~f 182 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEF 182 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCc
Confidence 3456899999999999999999863 557999999999999999998754310 1223789999999865321 23689
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++... .++.+.+.+.|||||++++..++
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 999998742 35668899999999999997654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=112.61 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|++++...+. .+..++++++.+|+.+... ..++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhcc--ccCCCcEEEEECChHHHHHhCCCCce
Confidence 45689999999999999999986 3557999999999999999998754321 1223789999999865321 136899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++... .++.+.+.+.|||||++++..++
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99997642 35568899999999999997654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=115.76 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~f 227 (298)
.++|.+|||+|||+|.++..+++. + ..|+++|+++.+++.|++|+..++.. .++.++|+.+.+.. .+.|
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~-g--a~V~avDis~~al~~a~~n~~~ng~~-------~~~~~~D~~~~l~~~~~~f 281 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK-G--AYALAVDKDLEALGVLDQAALRLGLR-------VDIRHGEALPTLRGLEGPF 281 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCC-------CEEEESCHHHHHHTCCCCE
T ss_pred hcCCCeEEEcccchhHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHhCCC-------CcEEEccHHHHHHHhcCCC
Confidence 567999999999999999999987 4 35999999999999999999987752 24568887653211 2349
Q ss_pred cEEEECCCC---------------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++++. ..+.+.+.+.|||||+|++....
T Consensus 282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999999885 24557788999999999965543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=116.72 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC----CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE----FAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~----~~~ 226 (298)
++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++|+..++. .+++++.+|+.+..+. ..+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~~~~~ 279 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGER 279 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHhcCCC
Confidence 78899999999999999999873 7999999999999999999988765 4699999998764321 368
Q ss_pred ccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||+|+++++. ..+...+.+.|||||++++.....
T Consensus 280 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 280 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred eeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999999865 234577889999999999977653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=113.92 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
.+++.+|||+|||+|..+..+++.. +..+|+++|+++++++.|++++.... ..+..++++++.+|+.+... ..++|
T Consensus 114 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~--~~~~~~~v~~~~~D~~~~l~~~~~~f 190 (321)
T 2pt6_A 114 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNIS--CGYEDKRVNVFIEDASKFLENVTNTY 190 (321)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhc--cccCCCcEEEEEccHHHHHhhcCCCc
Confidence 3456899999999999999999863 45799999999999999999876521 01223789999999765321 23689
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++... .++.+.+.+.|||||++++..++
T Consensus 191 DvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 191 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999998732 35568899999999999997655
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-12 Score=113.61 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=72.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD 216 (298)
...+++.+. ...++.+|||+|||+|+++..+++. +. .+|+|+|+++++++.|+++..+... ....++.+.. .+
T Consensus 25 L~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~-~~V~gvDis~~ml~~a~~~~~~~~~---~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GA-KLVYALDVGTNQLAWKIRSDERVVV---MEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEECSSCCCCCHHHHTCTTEEE---ECSCCGGGCCGGG
T ss_pred HHHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CC-CEEEEEcCCHHHHHHHHHhCccccc---cccceEEEeCHhH
Confidence 345566554 1234679999999999999999987 43 4999999999999998765322111 0111222222 22
Q ss_pred CCCCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v 257 (298)
.....++...||++++. +..+.+++.+.|||||++++.+
T Consensus 99 ~~~~~~d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFIS--LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CCSCCCSEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE
T ss_pred cCcCCCCEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE
Confidence 21111222345554443 2678899999999999999965
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=104.34 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~~~f 227 (298)
.++.+|||+|||+|..+..+++. + .+++++|+++.+++.++++. .++..+|... .....++|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCcc
Confidence 57789999999999999999987 4 79999999999999987542 2578888765 22234789
Q ss_pred cEEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|++..+++++ .+++.+.|||||++++.+++
T Consensus 95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999999887654 47788999999999998765
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-11 Score=115.74 Aligned_cols=104 Identities=19% Similarity=0.109 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc-CCccCCCCEEEEEcCCCCCCCC----C
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLKEGSLSVHVGDGRKGWPE----F 224 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~-~~~l~~~~v~~~~gD~~~~~~~----~ 224 (298)
.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++|+..++. . ++++++.+|+.+.... .
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~~al~~a~~n~~~ngl~~-----~~v~~~~~D~~~~~~~~~~~~ 291 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLDL-----SKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCG-----GGEEEEESCHHHHHHHHHHTT
T ss_pred hCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-----cceEEEECCHHHHHHHHHhcC
Confidence 57889999999999999999986 3 26999999999999999999988664 2 4899999998764321 3
Q ss_pred CCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 225 APYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 225 ~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+||+|+++.+. ..+...+.+.|||||++++.....
T Consensus 292 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp CCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 589999999764 234567889999999999977653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=114.77 Aligned_cols=105 Identities=19% Similarity=0.293 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~ 224 (298)
.+++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++|+..+++. ++++++.+|+.+..+ ..
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~-----~~v~~~~~d~~~~~~~~~~~~ 287 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVE-----DRMKFIVGSAFEEMEKLQKKG 287 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCHHHHHHHHHHTT
T ss_pred hhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ccceEEECCHHHHHHHHHhhC
Confidence 447899999999999999999986 3 259999999999999999999887652 389999999875432 13
Q ss_pred CCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 225 APYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 225 ~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++||+|+++.+. ..+...+.+.|||||++++...+.
T Consensus 288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 689999999865 234467889999999999876653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=115.35 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC-CEEEEEcCCCCCCC----CC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG-SLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~-~v~~~~gD~~~~~~----~~ 224 (298)
.++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++|+..+++. + +++++.+|+.+..+ ..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga-~~V~~vD~s~~al~~A~~N~~~n~~~-----~~~v~~~~~D~~~~l~~~~~~~ 283 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GA-MATTSVDLAKRSRALSLAHFEANHLD-----MANHQLVVMDVFDYFKYARRHH 283 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TB-SEEEEEESCTTHHHHHHHHHHHTTCC-----CTTEEEEESCHHHHHHHHHHTT
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCCC-----ccceEEEECCHHHHHHHHHHhC
Confidence 67889999999999999999985 32 48999999999999999999987652 3 89999999865322 13
Q ss_pred CCccEEEECCCCc---------------hhHHHHHhccccCcEEEEEECCC
Q 022372 225 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 225 ~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+||+|+++++.. .+.+.+.+.|+|||.+++.....
T Consensus 284 ~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 284 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 5899999987652 12345679999999999987654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=111.74 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
.+++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... ..+..++++++.+|+.+... ..++|
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERY 152 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHhcCCCc
Confidence 3456899999999999999999863 447999999999999999998764210 00123689999999875321 23689
Q ss_pred cEEEECCCCc-------------hhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAP-------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~-------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+++...+ ++.+.+.+.|||||++++..+
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999987543 346889999999999999754
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=105.33 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhcc----------------C---C-
Q 022372 151 PGMHALDIGSGTGY----LTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAA----------------A---P- 203 (298)
Q Consensus 151 ~g~~VLDiG~GsG~----~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~----------------~---~- 203 (298)
++.+|||+|||+|. ++..+++..+. +.+|+|+|+|+++++.|+++...... . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 56667776542 35899999999999999986411000 0 0
Q ss_pred ccC-----CCCEEEEEcCCCCC-CCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 204 LLK-----EGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 204 ~l~-----~~~v~~~~gD~~~~-~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
... ..+|.|.++|..+. ++..++||+|+|..++. .+.+.+.+.|||||.|++-..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 000 03799999999874 33246899999998863 345778899999999998433
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-11 Score=110.52 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||+|||+|.++.. ++. ..+|+++|+++.+++.|++|+..++.. ++++++.+|+.+.. ++||
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~-----~~v~~~~~D~~~~~---~~fD 260 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLE-----HKIIPILSDVREVD---VKGN 260 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCGGGCC---CCEE
T ss_pred cCCCCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECChHHhc---CCCc
Confidence 56889999999999999999 772 369999999999999999999987653 58999999998765 6899
Q ss_pred EEEECCCC--chhHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAA--PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+|+++.+. ..+.+.+.+.|+|||.+++..
T Consensus 261 ~Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 261 RVIMNLPKFAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp EEEECCTTTGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCcHhHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999654 467789999999999998854
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.20 E-value=9e-11 Score=109.04 Aligned_cols=102 Identities=19% Similarity=0.186 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCC----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQ----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~----~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
..++.+|||+|||+|.++..+++.+... .+++|+|+++.+++.|+.++...+. ++.+..+|.....+ .
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------~~~i~~~D~l~~~~-~ 199 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDGLANLL-V 199 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCTTSCCC-C
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------CceEEECCCCCccc-c
Confidence 3467899999999999999998886332 6899999999999999999876542 57899999877543 3
Q ss_pred CCccEEEECCCCc------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAP------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++||+|++++++. .+.+.+.+.|||||++++.++
T Consensus 200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 6899999998842 245778899999999999874
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-11 Score=103.72 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|..+..+++. +++|+++.+++.++++ +++++.+|........++||+|
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v 106 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFA 106 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEE
Confidence 4889999999999998876542 9999999999999864 4678888887654445789999
Q ss_pred EECCCCch------hHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAAAPE------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++..++++ +.+++.+.|||||++++...+.
T Consensus 107 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 107 LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 99988754 4578889999999999976543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=104.01 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeC-CHHHHHHHHHHHHHhccCCccCC-----CCEEEEEcCCCCCC-
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH-IPELVVSSIQNIEKSAAAPLLKE-----GSLSVHVGDGRKGW- 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~-s~~~l~~A~~~~~~~~~~~~l~~-----~~v~~~~gD~~~~~- 221 (298)
..++.+|||+|||+|.++..+++. +. .+|+++|+ ++.+++.|++++..+... ..+. +++++...+..+..
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 153 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-GA-DQVVATDYPDPEILNSLESNIREHTAN-SCSSETVKRASPKVVPYRWGDSPD 153 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-TC-SEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTH
T ss_pred hcCCCeEEEecccccHHHHHHHHc-CC-CEEEEEeCCCHHHHHHHHHHHHHhhhh-hcccccCCCCCeEEEEecCCCccH
Confidence 357889999999999999999886 32 58999999 899999999998432110 0111 36778765544321
Q ss_pred --C---CCCCccEEEECCCCc------hhHHHHHhccc---c--CcEEEEEECC
Q 022372 222 --P---EFAPYDAIHVGAAAP------EIPQALIDQLK---P--GGRMVIPVGN 259 (298)
Q Consensus 222 --~---~~~~fD~Ii~~~~~~------~l~~~l~~~Lk---p--GG~Lvi~v~~ 259 (298)
. ..++||+|++...+. .+.+.+.+.|| | ||++++.+..
T Consensus 154 ~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 154 SLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp HHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred HHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 1 236899999866553 35578889999 9 9998875543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=98.50 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=72.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCC--------cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE-EcCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQ--------GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDGR 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~--------~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~-~gD~~ 218 (298)
.++++.+|||+|||+|..+..+++..++. .+|+++|+++.. . ..+++++ .+|..
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~------~~~~~~~~~~d~~ 81 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P------LEGATFLCPADVT 81 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C------CTTCEEECSCCTT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c------CCCCeEEEeccCC
Confidence 36789999999999999999999987543 799999999831 1 1467888 88876
Q ss_pred CCC--------CCCCCccEEEECCCCc-----------------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGW--------PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~--------~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
... .+.++||+|+++...+ .+.+++.+.|||||++++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 82 DPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp SHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 431 1225899999976432 3456788999999999998654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=106.85 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=75.8
Q ss_pred cccCCCcc-ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 125 AIGYNATI-SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 125 ~~g~~~~i-s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
...+|++. ..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++++...+.
T Consensus 17 ~k~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~-- 89 (299)
T 2h1r_A 17 LYFQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGY-- 89 (299)
T ss_dssp ------CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTC--
T ss_pred hhccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 33455544 46778888888886 7888999999999999999999863 6999999999999999999876443
Q ss_pred ccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
++++++.+|+..... ++||+|+++.+...
T Consensus 90 ----~~v~~~~~D~~~~~~--~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 90 ----NNLEVYEGDAIKTVF--PKFDVCTANIPYKI 118 (299)
T ss_dssp ----CCEEC----CCSSCC--CCCSEEEEECCGGG
T ss_pred ----CceEEEECchhhCCc--ccCCEEEEcCCccc
Confidence 689999999877533 47999999988643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-10 Score=96.79 Aligned_cols=110 Identities=21% Similarity=0.185 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 133 SAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 133 s~p~~~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
..+.+...++..+.. ...++.+|||+|||+|.++..+++. +. .+|+|+|+++.+++.|++++...+ -+++
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~ 100 (207)
T 1wy7_A 30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEFK-------GKFK 100 (207)
T ss_dssp CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGGT-------TSEE
T ss_pred CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcC-------CCEE
Confidence 344555555554431 2457889999999999999999987 33 489999999999999999986643 1799
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
++.+|..+. + ++||+|+++.+.. .+.+.+.+.+ ||.+++.
T Consensus 101 ~~~~d~~~~-~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 101 VFIGDVSEF-N--SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp EEESCGGGC-C--CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred EEECchHHc-C--CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 999998774 2 4899999998752 3446666766 5555443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-11 Score=101.09 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=70.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------ 222 (298)
++++.+|||+|||+|..+..+++. .++|+|+|+++.. ..++++++++|..+...
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------------~~~~v~~~~~D~~~~~~~~~~~~ 82 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------------EIAGVRFIRCDIFKETIFDDIDR 82 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------------CCTTCEEEECCTTSSSHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------------cCCCeEEEEccccCHHHHHHHHH
Confidence 578999999999999999999987 3799999999741 11588999999876421
Q ss_pred --C---CCCccEEEECCCC-----------------chhHHHHHhccccCcEEEEEECC
Q 022372 223 --E---FAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 --~---~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
. .++||+|+++.+. +.+.+.+.+.|||||++++.+-.
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 0 0389999998753 12335677899999999997753
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=108.67 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||||||+|..+..+++.. +..+++++|+ +..+. +++....+.. ++++++.+|..+..+ +||
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~-----~~v~~~~~d~~~~~p---~~D 249 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVA-----GRWKVVEGDFLREVP---HAD 249 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGT-----TSEEEEECCTTTCCC---CCS
T ss_pred ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCC-----CCeEEEecCCCCCCC---CCc
Confidence 5678899999999999999999985 6679999999 44444 3322222222 689999999975443 799
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
+|++...+++ +.+++.+.|||||++++.-
T Consensus 250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999988753 4577889999999999843
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-12 Score=120.42 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ++++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++ +.. .....+...+...
T Consensus 98 ~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~----~~~----~~~~~~~~~~~~~ 164 (416)
T 4e2x_A 98 DFLATEL--TGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREK----GIR----VRTDFFEKATADD 164 (416)
T ss_dssp HHHHTTT--CSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTT----TCC----EECSCCSHHHHHH
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHc----CCC----cceeeechhhHhh
Confidence 3444443 5678899999999999999999873 5999999999999999865 110 0000011111111
Q ss_pred CCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 220 GWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+.++||+|++..+++++ .+++.+.|||||++++.+++
T Consensus 165 l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 165 VRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp HHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 11123789999999998765 47889999999999998754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=105.91 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHHHHHHccCC-CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE-EcCC
Q 022372 140 TCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDG 217 (298)
Q Consensus 140 ~~l~~L~~~l~-~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~-~gD~ 217 (298)
.+++.+. +. ++.+|||+|||+|+++..+++. +. .+|+|+|+++.|++.+.++- +++... ..+.
T Consensus 75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga-~~V~aVDvs~~mL~~a~r~~-----------~rv~~~~~~ni 139 (291)
T 3hp7_A 75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GA-KLVYAVDVGTNQLVWKLRQD-----------DRVRSMEQYNF 139 (291)
T ss_dssp HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEECSSSSCSCHHHHTC-----------TTEEEECSCCG
T ss_pred HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHhC-----------cccceecccCc
Confidence 3455544 33 5779999999999999999987 33 69999999999998854321 233222 1222
Q ss_pred CCCC---CCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEEC
Q 022372 218 RKGW---PEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~---~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... .+..+||.|+++.++. .++.++.+.|||||++++.+.
T Consensus 140 ~~l~~~~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvk 186 (291)
T 3hp7_A 140 RYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVK 186 (291)
T ss_dssp GGCCGGGCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEEC
T ss_pred eecchhhCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEEC
Confidence 1111 1223599999988764 567899999999999999753
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=106.86 Aligned_cols=124 Identities=13% Similarity=0.037 Sum_probs=95.1
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC---------------------------------
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP--------------------------------- 175 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~--------------------------------- 175 (298)
+....++.+.+.++.... ..++..|||.+||+|.++..++.....
T Consensus 181 ~~Apl~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~ 258 (393)
T 3k0b_A 181 GSAPIKETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLA 258 (393)
T ss_dssp CSCSCCHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhh
Confidence 334455666677776665 678889999999999999888876421
Q ss_pred ----CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc----------hhHH
Q 022372 176 ----QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP----------EIPQ 241 (298)
Q Consensus 176 ----~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~----------~l~~ 241 (298)
..+|+|+|+++.+++.|++|+...++. +++++.++|..+...+ .+||+|+++++.- .+.+
T Consensus 259 ~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~-----~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~ 332 (393)
T 3k0b_A 259 NYDQPLNIIGGDIDARLIEIAKQNAVEAGLG-----DLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYR 332 (393)
T ss_dssp CTTCCCCEEEEESCHHHHHHHHHHHHHTTCT-----TCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHH
T ss_pred cccCCceEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHH
Confidence 146999999999999999999987764 5699999999876554 5899999998862 2334
Q ss_pred HHHhcccc--CcEEEEEECCC
Q 022372 242 ALIDQLKP--GGRMVIPVGNI 260 (298)
Q Consensus 242 ~l~~~Lkp--GG~Lvi~v~~~ 260 (298)
.+.+.||+ ||.+++-.++.
T Consensus 333 ~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 333 EMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHHhcCCCCEEEEEECCH
Confidence 45555655 99999877764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-11 Score=118.11 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~~~~ 226 (298)
+..+.+|||||||+|.++..||++. .+|+|||.++.+++.|+.+..+.+. .++++.++++.+. ..+.++
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~ 134 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEENPD------FAAEFRVGRIEEVIAALEEGE 134 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHHHHHHHCCTTS
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHHHHhhhccCCC
Confidence 4566899999999999999999984 6999999999999999998877543 3799999998653 223468
Q ss_pred ccEEEECCCCchhHH--------HHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQ--------ALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~--------~l~~~LkpGG~Lvi 255 (298)
||+|++..+++|+++ .+.+.|+++|..++
T Consensus 135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred ccEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence 999999999998862 45566777776655
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=110.73 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=95.7
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC------------CCcEEEEEeCCHHHHHHHHHHH
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG------------PQGRAVGVEHIPELVVSSIQNI 196 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g------------~~~~V~giD~s~~~l~~A~~~~ 196 (298)
|++.+.+.+...+++.+. ..++.+|||.|||+|.++..+++.+. ...+++|+|+++.+++.|+.++
T Consensus 151 G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl 228 (445)
T 2okc_A 151 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 228 (445)
T ss_dssp GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence 455555666777777775 67788999999999999988887641 1257999999999999999998
Q ss_pred HHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-----------------------hhHHHHHhccccCcEE
Q 022372 197 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-----------------------EIPQALIDQLKPGGRM 253 (298)
Q Consensus 197 ~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~L 253 (298)
...+.. ..++.+.++|....... .+||+|++++++. .+.+.+.+.|||||++
T Consensus 229 ~l~g~~----~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~ 303 (445)
T 2okc_A 229 YLHGIG----TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 303 (445)
T ss_dssp HHTTCC----SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HHhCCC----cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence 776542 12677899998775443 4899999998752 2357888999999999
Q ss_pred EEEECC
Q 022372 254 VIPVGN 259 (298)
Q Consensus 254 vi~v~~ 259 (298)
++.+++
T Consensus 304 a~V~p~ 309 (445)
T 2okc_A 304 AVVLPD 309 (445)
T ss_dssp EEEEEH
T ss_pred EEEECC
Confidence 887653
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.9e-10 Score=106.00 Aligned_cols=121 Identities=15% Similarity=0.074 Sum_probs=93.2
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC------------------------------------
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP------------------------------------ 175 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~------------------------------------ 175 (298)
...+.+.+.++.... ..++.+|||.+||+|.++..++.....
T Consensus 178 pl~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 178 PIRETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCCHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCcHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 345556666666554 678899999999999999998877421
Q ss_pred -CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc----------hhHHHHH
Q 022372 176 -QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP----------EIPQALI 244 (298)
Q Consensus 176 -~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~----------~l~~~l~ 244 (298)
..+|+|+|+++.+++.|++|+..+++. +++++.++|..+...+ .+||+|+++++.- .+.+.+.
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~-----~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIAGVD-----EYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence 147999999999999999999988764 5799999999876554 6899999999962 2234455
Q ss_pred hcccc--CcEEEEEECCC
Q 022372 245 DQLKP--GGRMVIPVGNI 260 (298)
Q Consensus 245 ~~Lkp--GG~Lvi~v~~~ 260 (298)
+.||+ ||.+++-.++.
T Consensus 330 ~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 330 YAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHTSBSCEEEEEESCT
T ss_pred HHHhhCCCCEEEEEECCH
Confidence 56665 89988877764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=118.01 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
.+|.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.|++|+..+++. ..+++++++|+.+... ..++||
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-ga-~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~~l~~~~~~fD 611 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-GA-RSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLAWLREANEQFD 611 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHHHHHHCCCCEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHhcCCCcc
Confidence 46889999999999999999985 33 58999999999999999999987652 2489999999876322 236899
Q ss_pred EEEECCCC-----------------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++++. ..+.+.+.+.|||||+|++....
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 99999863 12356788999999999998766
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=110.07 Aligned_cols=114 Identities=22% Similarity=0.181 Sum_probs=87.1
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~ 207 (298)
.|+..+.+.+...+++.+. ..++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|
T Consensus 18 ~g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------- 80 (421)
T 2ih2_A 18 LGRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------- 80 (421)
T ss_dssp ---CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------
T ss_pred CceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------
Confidence 4555555666777777775 45567999999999999999998764557999999999988766
Q ss_pred CCEEEEEcCCCCCCCCCCCccEEEECCCCc-----------------------------------hhHHHHHhccccCcE
Q 022372 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-----------------------------------EIPQALIDQLKPGGR 252 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-----------------------------------~l~~~l~~~LkpGG~ 252 (298)
.+++++++|.....+ .++||+|+++++.. .+.+.+.+.|||||+
T Consensus 81 ~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~ 159 (421)
T 2ih2_A 81 PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 159 (421)
T ss_dssp TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred CCCcEEeCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCE
Confidence 368899999877543 36899999986541 124567789999999
Q ss_pred EEEEECC
Q 022372 253 MVIPVGN 259 (298)
Q Consensus 253 Lvi~v~~ 259 (298)
+++.+++
T Consensus 160 ~~~i~p~ 166 (421)
T 2ih2_A 160 LVFVVPA 166 (421)
T ss_dssp EEEEEEG
T ss_pred EEEEECh
Confidence 9997765
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=104.95 Aligned_cols=114 Identities=22% Similarity=0.216 Sum_probs=80.7
Q ss_pred HHHHHHHHHHccCC-CCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 137 MHATCLQLLEENLK-PGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 137 ~~~~~l~~L~~~l~-~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
+..+++..|. .. .-.+|||+|||. +..+..+++...|..+|+++|.|+.|++.|++++.... ..+++++
T Consensus 65 fl~rav~~l~--~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~~~~~v 136 (277)
T 3giw_A 65 WMNRAVAHLA--KEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EGRTAYV 136 (277)
T ss_dssp HHHHHHHHHH--HTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SSEEEEE
T ss_pred HHHHHHHHhc--cccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CCcEEEE
Confidence 3455566664 22 236899999997 44455555544577899999999999999998875421 2479999
Q ss_pred EcCCCCCC---CC---CCCcc-----EEEECCCCchh---------HHHHHhccccCcEEEEEEC
Q 022372 214 VGDGRKGW---PE---FAPYD-----AIHVGAAAPEI---------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 214 ~gD~~~~~---~~---~~~fD-----~Ii~~~~~~~l---------~~~l~~~LkpGG~Lvi~v~ 258 (298)
++|..+.. .. .+.|| .|+++++++++ .+.+.+.|+|||+|++...
T Consensus 137 ~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 137 EADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp ECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 99998631 10 13354 58888887644 3567788999999999754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=103.10 Aligned_cols=121 Identities=12% Similarity=0.023 Sum_probs=94.0
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC------------------------------------
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP------------------------------------ 175 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~------------------------------------ 175 (298)
...+.+.+.++.... .+++..+||.+||+|.++..++.....
T Consensus 177 pl~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 254 (384)
T 3ldg_A 177 PIKENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD 254 (384)
T ss_dssp CCCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCcHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence 345566666776665 678899999999999999888876421
Q ss_pred -CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc----------hhHHHHH
Q 022372 176 -QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP----------EIPQALI 244 (298)
Q Consensus 176 -~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~----------~l~~~l~ 244 (298)
..+++|+|+++.+++.|++|+...++. +++++.++|..+...+ .+||+|+++++.- .+.+.+.
T Consensus 255 ~~~~v~GvDid~~al~~Ar~Na~~~gl~-----~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg 328 (384)
T 3ldg_A 255 IQLDISGFDFDGRMVEIARKNAREVGLE-----DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMG 328 (384)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHH
Confidence 146999999999999999999987764 5799999999876554 5899999998852 2334455
Q ss_pred hcccc--CcEEEEEECCC
Q 022372 245 DQLKP--GGRMVIPVGNI 260 (298)
Q Consensus 245 ~~Lkp--GG~Lvi~v~~~ 260 (298)
+.||+ ||++++-.++.
T Consensus 329 ~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 329 ETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHTTCTTSEEEEEESCT
T ss_pred HHHhhCCCcEEEEEECCH
Confidence 56665 99999988764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.3e-10 Score=93.96 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 136 HMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 136 ~~~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
.+...++..+.. ...++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++++. +++++.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~ 101 (200)
T 1ne2_A 35 STAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG-----------GVNFMV 101 (200)
T ss_dssp HHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT-----------TSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC-----------CCEEEE
Confidence 334444444421 2457789999999999999999987 3 2589999999999999998752 678999
Q ss_pred cCCCCCCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
+|..+. + ++||+|+++.++.+ +.+.+.+.+ |.+++..
T Consensus 102 ~d~~~~-~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~ 146 (200)
T 1ne2_A 102 ADVSEI-S--GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIG 146 (200)
T ss_dssp CCGGGC-C--CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEE
T ss_pred CcHHHC-C--CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEE
Confidence 998764 2 68999999988643 334555555 4444434
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=102.76 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=77.3
Q ss_pred CCc-cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022372 129 NAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207 (298)
Q Consensus 129 ~~~-is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~ 207 (298)
|++ +..+.+...+++.+. +.++.+|||||||+|.+|..+++.. .+|+++|+++++++.+++++.. .
T Consensus 8 GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~--------~ 74 (255)
T 3tqs_A 8 GQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ--------Q 74 (255)
T ss_dssp -CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--------C
T ss_pred CcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--------C
Confidence 443 345778888999887 8889999999999999999999874 6999999999999999998754 1
Q ss_pred CCEEEEEcCCCCCCCC----CCCccEEEECCCCc
Q 022372 208 GSLSVHVGDGRKGWPE----FAPYDAIHVGAAAP 237 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~----~~~fD~Ii~~~~~~ 237 (298)
++++++++|+.+...+ .++|| |+++.+..
T Consensus 75 ~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 75 KNITIYQNDALQFDFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp TTEEEEESCTTTCCGGGSCCSSCEE-EEEECCHH
T ss_pred CCcEEEEcchHhCCHHHhccCCCeE-EEecCCcc
Confidence 6899999999875432 24688 88888763
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.1e-11 Score=111.37 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=75.8
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCC------CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSG------TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~G------sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
++.+++..+ ..++.+||||||| +|..+..+++...++++|+|+|+++.+. . ..+++
T Consensus 205 ~Ye~lL~~l---~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-------~~~rI 266 (419)
T 3sso_A 205 HYDRHFRDY---RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-------DELRI 266 (419)
T ss_dssp HHHHHHGGG---TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-------CBTTE
T ss_pred HHHHHHHhh---cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-------cCCCc
Confidence 344444433 4566899999999 7777777776655678999999999872 0 12689
Q ss_pred EEEEcCCCCCCCC------CCCccEEEECCCCc-----hhHHHHHhccccCcEEEEE
Q 022372 211 SVHVGDGRKGWPE------FAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 211 ~~~~gD~~~~~~~------~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~ 256 (298)
+++++|..+.... .++||+|+++.... ..++++++.|||||++++.
T Consensus 267 ~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 267 RTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp EEEECCTTCHHHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEecccccchhhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 9999998764222 37899999986541 3457889999999999984
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=100.18 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=84.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+.+..+|||+|||+|-++..++.. .+..+|+++|+++.+++.+++++..++. +.++...|.....++ ++|
T Consensus 129 ~i~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~-------~~~~~v~D~~~~~p~-~~~ 199 (281)
T 3lcv_B 129 HLPRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNV-------PHRTNVADLLEDRLD-EPA 199 (281)
T ss_dssp GSCCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTC-------CEEEEECCTTTSCCC-SCC
T ss_pred ccCCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeeecccCCC-CCc
Confidence 3456789999999999999999886 4678999999999999999999988663 478899998887766 789
Q ss_pred cEEEECCCCchhHH-------HHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIPQ-------ALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~~-------~l~~~LkpGG~Lvi 255 (298)
|++++.-.++.+.+ .+++.|+++|.+|-
T Consensus 200 DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 200 DVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp SEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence 99999999877653 57889999988764
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-09 Score=95.47 Aligned_cols=96 Identities=16% Similarity=0.049 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.+..+|||+|||+|-++..++ +..+++++|+++.+++.+++++...+ .+..+...|.....++ ++||+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g-------~~~~~~v~D~~~~~~~-~~~Dv 171 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD-------WDFTFALQDVLCAPPA-EAGDL 171 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT-------CEEEEEECCTTTSCCC-CBCSE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC-------CCceEEEeecccCCCC-CCcch
Confidence 567899999999999998877 44799999999999999999987754 5788999999887766 68999
Q ss_pred EEECCCCchhH-------HHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAPEIP-------QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~~l~-------~~l~~~LkpGG~Lvi~v~ 258 (298)
|++.-.++.+. -++++.|+++|++| +++
T Consensus 172 vLllk~lh~LE~q~~~~~~~ll~aL~~~~vvV-sfP 206 (253)
T 3frh_A 172 ALIFKLLPLLEREQAGSAMALLQSLNTPRMAV-SFP 206 (253)
T ss_dssp EEEESCHHHHHHHSTTHHHHHHHHCBCSEEEE-EEE
T ss_pred HHHHHHHHHhhhhchhhHHHHHHHhcCCCEEE-EcC
Confidence 99998887664 36788999986655 455
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=107.44 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC-EEEEEcCCCCCCC--CCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS-LSVHVGDGRKGWP--EFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~-v~~~~gD~~~~~~--~~~~ 226 (298)
++|.+|||++||+|.++..+++..+...+|+++|+++.+++.+++|++.+++. ++ ++++.+|+.+... ..+.
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-----~~~v~v~~~Da~~~l~~~~~~~ 125 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-----EDRYEIHGMEANFFLRKEWGFG 125 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-----GGGEEEECSCHHHHHHSCCSSC
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CceEEEEeCCHHHHHHHhhCCC
Confidence 56889999999999999999987422268999999999999999999998763 34 9999999865322 1357
Q ss_pred ccEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
||+|++++.. ..+.+.+.+.|++||.|+++..
T Consensus 126 fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 126 FDYVDLDPFGTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence 9999999832 3577888999999999988763
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=104.40 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||||||+|..+..+++.. +..+++++|+ +.+++.|++. ++++++.+|..+..+ .||
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~~~~---~~D 269 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL------------SGIEHVGGDMFASVP---QGD 269 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTTCCC---CEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc------------CCCEEEeCCcccCCC---CCC
Confidence 4567899999999999999999985 6679999999 8888776531 579999999987432 299
Q ss_pred EEEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+|++...++ .+.+++.+.|||||++++.
T Consensus 270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999876 3457788999999999985
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=106.53 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh---------------ccCCccCCCCEEEEEc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS---------------AAAPLLKEGSLSVHVG 215 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~---------------~~~~~l~~~~v~~~~g 215 (298)
++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.+++|++.+ +. .+++++++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~ 119 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHD 119 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEES
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcC
Confidence 678999999999999999999853 358999999999999999999987 43 35999999
Q ss_pred CCCCCCCC-CCCccEEEECCCC--chhHHHHHhccccCcEEEEEE
Q 022372 216 DGRKGWPE-FAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 216 D~~~~~~~-~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v 257 (298)
|+...... .+.||+|++++.. ..+.+.+.+.||+||.+++..
T Consensus 120 Da~~~~~~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 120 DANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp CHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHhccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 98653211 2579999998754 367788899999999988865
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=101.19 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..+.+...+++.+. +.++ +|||||||+|.+|..+++.. .+|+++|+++++++.+++++.. .++++
T Consensus 31 ~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~---------~~v~v 95 (271)
T 3fut_A 31 VSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG---------LPVRL 95 (271)
T ss_dssp CCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT---------SSEEE
T ss_pred CCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC---------CCEEE
Confidence 45677888899887 7888 99999999999999999984 6899999999999999988642 58999
Q ss_pred EEcCCCCCCCCC-CCccEEEECCCCc
Q 022372 213 HVGDGRKGWPEF-APYDAIHVGAAAP 237 (298)
Q Consensus 213 ~~gD~~~~~~~~-~~fD~Ii~~~~~~ 237 (298)
+++|+.+...+. ..+|.|+++.+..
T Consensus 96 i~~D~l~~~~~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 96 VFQDALLYPWEEVPQGSLLVANLPYH 121 (271)
T ss_dssp EESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred EECChhhCChhhccCccEEEecCccc
Confidence 999998754332 3689999998874
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.4e-10 Score=103.51 Aligned_cols=91 Identities=19% Similarity=0.315 Sum_probs=75.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||||||+|..+..+++.. |..+++++|+ +.+++.|+++ ++++++.+|..+.++. + |
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~~~p~-~--D 263 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF------------SGVEHLGGDMFDGVPK-G--D 263 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTTCCCC-C--S
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc------------CCCEEEecCCCCCCCC-C--C
Confidence 4567899999999999999999985 6689999999 8888776421 5899999999875443 3 9
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
+|++...+++ +.+++++.|||||++++.
T Consensus 264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 299 (368)
T 3reo_A 264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVA 299 (368)
T ss_dssp EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999998863 457788999999999984
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=102.45 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||||||+|..+..+++.. |..+++++|+ +.+++.|+++ ++++++.+|..+..+. + |
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~D~~~~~p~-~--D 261 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF------------PGVTHVGGDMFKEVPS-G--D 261 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTTCCCC-C--S
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc------------CCeEEEeCCcCCCCCC-C--C
Confidence 4567899999999999999999985 6679999999 8887766431 6899999999874443 3 9
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
+|++...+++ +.+++++.|||||++++.
T Consensus 262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999988863 457788999999999984
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-11 Score=109.69 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=87.5
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
...+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++++.. .++++
T Consensus 12 l~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~--------~~~v~ 78 (245)
T 1yub_A 12 LTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL--------NTRVT 78 (245)
T ss_dssp CCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT--------CSEEE
T ss_pred CCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc--------CCceE
Confidence 344556777888776 7788999999999999999999984 6999999999999998876541 15899
Q ss_pred EEEcCCCCCCCC-CCCccEEEECCCCc-------h----------hH----HHHHhccccCcEEEEEECC
Q 022372 212 VHVGDGRKGWPE-FAPYDAIHVGAAAP-------E----------IP----QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 212 ~~~gD~~~~~~~-~~~fD~Ii~~~~~~-------~----------l~----~~l~~~LkpGG~Lvi~v~~ 259 (298)
++++|..+.... .++| .|+++.+.. + .. +.+.+.|||||++++....
T Consensus 79 ~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~ 147 (245)
T 1yub_A 79 LIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT 147 (245)
T ss_dssp ECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred EEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence 999999875433 3578 777776531 1 11 5578899999998885544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-10 Score=95.53 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=70.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ...++.+|||+|||+|..+..++ .+++++|+++. +++++.+|..
T Consensus 56 ~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------------~~~~~~~d~~ 107 (215)
T 2zfu_A 56 DRIARDLR-QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------------DPRVTVCDMA 107 (215)
T ss_dssp HHHHHHHH-TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------------STTEEESCTT
T ss_pred HHHHHHHh-ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------------CceEEEeccc
Confidence 34555554 24677899999999999887762 58999999987 2356788887
Q ss_pred CCCCCCCCccEEEECCCCc-----hhHHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+...+.++||+|++..+++ .+.+++.+.|||||++++...
T Consensus 108 ~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 108 QVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp SCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence 7544557899999988764 355788999999999999643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=100.61 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=71.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeC----CHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH----IPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~----s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~ 222 (298)
.++++.+|||+|||+|..+..+++. ++|+|+|+ ++.+++.+. . ...+.+++.++.+ |.....
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~------~~~~~~~v~~~~~~D~~~l~- 145 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--M------STYGWNLVRLQSGVDVFFIP- 145 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--C------CSTTGGGEEEECSCCTTTSC-
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--h------hhcCCCCeEEEeccccccCC-
Confidence 3678899999999999999999986 47999998 554332110 0 1122257999998 877642
Q ss_pred CCCCccEEEECCCCc------------hhHHHHHhccccCcEEEEEECCC
Q 022372 223 EFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.++||+|+++.+.. .+.+.+.+.|||||.+++.+..+
T Consensus 146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 36899999987642 13455679999999999976544
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=101.69 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||||||+|..+..+++.. |..+++++|+ +.+++.|++. ++++++.+|..+..+ .||
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~~~p---~~D 248 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFTSIP---NAD 248 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTTCCC---CCS
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccCCCC---Ccc
Confidence 5567899999999999999999985 5679999999 9998877531 469999999876433 399
Q ss_pred EEEECCCCc--------hhHHHHHhcccc---CcEEEEEE
Q 022372 229 AIHVGAAAP--------EIPQALIDQLKP---GGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~--------~l~~~l~~~Lkp---GG~Lvi~v 257 (298)
+|++...++ .+.+++.+.||| ||++++..
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 999999876 344778899999 99998853
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=99.57 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.+..+|+|||||+|..+..+++.. |+.+++..|. |++++.|++++...+ .++++++.+|...... ..+|
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~gD~~~~~~--~~~D 246 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEGDFFKDPL--PEAD 246 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCC--CCCS
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc------cCceeeecCccccCCC--CCce
Confidence 4566799999999999999999995 7788999997 889999988765432 2799999999886543 3589
Q ss_pred EEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
++++...+++ +.+++++.|+|||++++.
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 9999988753 457888999999999984
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=99.87 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=69.8
Q ss_pred cCCCCCEEEEEcCCC------cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE-EEcCCCCC
Q 022372 148 NLKPGMHALDIGSGT------GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV-HVGDGRKG 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs------G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~-~~gD~~~~ 220 (298)
.++++.+|||+|||+ |. ..+++..++.++|+|+|+++. + .++++ +++|..+.
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-----------~~v~~~i~gD~~~~ 118 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-----------SDADSTLIGDCATV 118 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-----------CSSSEEEESCGGGC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-----------CCCEEEEECccccC
Confidence 367899999999965 55 566777665689999999987 1 35678 99998765
Q ss_pred CCCCCCccEEEECCCCc-----------------hhHHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
... ++||+|+++.... .+.+.+.+.|||||++++.+..
T Consensus 119 ~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 119 HTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred Ccc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 433 6899999975421 4567889999999999997743
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=93.29 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=82.8
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
...+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++++.. .++++
T Consensus 13 l~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--------~~~v~ 79 (244)
T 1qam_A 13 ITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--------HDNFQ 79 (244)
T ss_dssp CCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--------CCSEE
T ss_pred cCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--------CCCeE
Confidence 344566777777765 6788999999999999999999985 6999999999999999988743 15899
Q ss_pred EEEcCCCCCCCC-CCCccEEEECCCCch-------h----------H----HHHHhccccCcEEEEEE
Q 022372 212 VHVGDGRKGWPE-FAPYDAIHVGAAAPE-------I----------P----QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 212 ~~~gD~~~~~~~-~~~fD~Ii~~~~~~~-------l----------~----~~l~~~LkpGG~Lvi~v 257 (298)
++.+|+.+...+ ...| .|+++.+... + . +.+.+.++++|++.+..
T Consensus 80 ~~~~D~~~~~~~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 146 (244)
T 1qam_A 80 VLNKDILQFKFPKNQSY-KIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFL 146 (244)
T ss_dssp EECCCGGGCCCCSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHHH
T ss_pred EEEChHHhCCcccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhHHh
Confidence 999998875433 2355 5677665421 1 0 33667778887765533
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-10 Score=103.78 Aligned_cols=100 Identities=15% Similarity=0.004 Sum_probs=71.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-CccCCCCEEEE--EcCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVH--VGDGRKGWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l~~~~v~~~--~gD~~~~~~~~ 224 (298)
.++++.+|||+|||+|.++..+++. ++|+|+|+++ ++..++++ ... ...+ .++.++ ++|+.... .
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~----~~~~~~~~-~~v~~~~~~~D~~~l~--~ 138 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEV----PRITESYG-WNIVKFKSRVDIHTLP--V 138 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCC----CCCCCBTT-GGGEEEECSCCTTTSC--C
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhh----hhhhhccC-CCeEEEecccCHhHCC--C
Confidence 3678999999999999999999886 5899999998 43222211 000 0011 168888 88987643 4
Q ss_pred CCccEEEECCCC----c--------hhHHHHHhccccCc--EEEEEECC
Q 022372 225 APYDAIHVGAAA----P--------EIPQALIDQLKPGG--RMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~----~--------~l~~~l~~~LkpGG--~Lvi~v~~ 259 (298)
++||+|+++.+. + .+.+.+.+.||||| .+++.+-.
T Consensus 139 ~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 689999998651 1 13466779999999 99987643
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-09 Score=105.91 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=94.3
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC-----------------CcEEEEEeCCHHHHH
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-----------------QGRAVGVEHIPELVV 190 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~-----------------~~~V~giD~s~~~l~ 190 (298)
.|+..+.+.+...|++.+. ..++.+|||.+||+|.+...+++.+.. ..+++|+|+++.+++
T Consensus 148 ~G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~ 225 (541)
T 2ar0_A 148 AGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 225 (541)
T ss_dssp --CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred CCeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence 3566666666777777775 677889999999999999888876422 137999999999999
Q ss_pred HHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCccEEEECCCCc--------------------hhHHHHHhcccc
Q 022372 191 SSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAP--------------------EIPQALIDQLKP 249 (298)
Q Consensus 191 ~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD~Ii~~~~~~--------------------~l~~~l~~~Lkp 249 (298)
.|+.++...+..... ..++.+.++|..... ....+||+|++++++. ...+.+.+.|||
T Consensus 226 lA~~nl~l~gi~~~~-~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 304 (541)
T 2ar0_A 226 LALMNCLLHDIEGNL-DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 304 (541)
T ss_dssp HHHHHHHTTTCCCBG-GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhCCCccc-cccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC
Confidence 999998765542000 012678899987532 2236899999998752 244778899999
Q ss_pred CcEEEEEECC
Q 022372 250 GGRMVIPVGN 259 (298)
Q Consensus 250 GG~Lvi~v~~ 259 (298)
||++++.+++
T Consensus 305 gGr~a~V~p~ 314 (541)
T 2ar0_A 305 GGRAAVVVPD 314 (541)
T ss_dssp EEEEEEEEEH
T ss_pred CCEEEEEecC
Confidence 9999987754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-09 Score=99.61 Aligned_cols=110 Identities=21% Similarity=0.210 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
+++|++|||+++|.|.-|..+++.. +.+.|+++|+++..++..++++++.+........++.+...|+.... ...+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 8899999999999999999999974 55789999999999999999999876543233368899988876532 123689
Q ss_pred cEEEECCCCc------------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP------------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~------------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|+++++.. .+.+...+.|||||+||.+.-.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 9999998742 1224567889999999997753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-09 Score=96.28 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=78.2
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
+..+.+...+++.+. +.++.+|||||||+|.++..+++.... +++|+++|+++++++.++++. . .++
T Consensus 25 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---------~~v 92 (279)
T 3uzu_A 25 LVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---------ELL 92 (279)
T ss_dssp ECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---------GGE
T ss_pred cCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---------CCc
Confidence 345677888888886 788999999999999999999998632 245999999999999999883 1 589
Q ss_pred EEEEcCCCCCCCCC----C--CccEEEECCCCchhHHHHHhccc
Q 022372 211 SVHVGDGRKGWPEF----A--PYDAIHVGAAAPEIPQALIDQLK 248 (298)
Q Consensus 211 ~~~~gD~~~~~~~~----~--~fD~Ii~~~~~~~l~~~l~~~Lk 248 (298)
+++++|+.+...+. . ..+.|+.|.+..--..-+.++|.
T Consensus 93 ~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~ 136 (279)
T 3uzu_A 93 ELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMS 136 (279)
T ss_dssp EEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGG
T ss_pred EEEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHHh
Confidence 99999988653321 0 23578888776433333444443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-10 Score=104.69 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=71.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE--EcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH--VGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~--~gD~~~~~~~~~ 225 (298)
.++++.+|||+|||+|.++..+++. ++|+|+|+++ ++..++++... ....+ .++.++ ++|+.... .+
T Consensus 79 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~---~~~~~-~~v~~~~~~~D~~~l~--~~ 147 (276)
T 2wa2_A 79 GVELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRL---VETFG-WNLITFKSKVDVTKME--PF 147 (276)
T ss_dssp SCCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCC---CCCTT-GGGEEEECSCCGGGCC--CC
T ss_pred CCCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhh---hhhcC-CCeEEEeccCcHhhCC--CC
Confidence 3678899999999999999999986 4899999998 43332211000 00011 278888 88887643 47
Q ss_pred CccEEEECCCC----c--------hhHHHHHhccccCc--EEEEEECC
Q 022372 226 PYDAIHVGAAA----P--------EIPQALIDQLKPGG--RMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~----~--------~l~~~l~~~LkpGG--~Lvi~v~~ 259 (298)
+||+|+++.+. + .+.+.+.+.||||| .+++.+-.
T Consensus 148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 89999998661 0 13566788999999 99986543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-09 Score=97.03 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|.+...+++.+. ++++.+|||+|||+|..+..+++.+ +.++|+|+|.++++++.|++++...+ .++++++
T Consensus 12 pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g-------~~v~~v~ 81 (301)
T 1m6y_A 12 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFK 81 (301)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEE
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEE
Confidence 445677888886 7889999999999999999999986 35799999999999999999986643 5899999
Q ss_pred cCCCCCC---C--CCCCccEEEECCCCc
Q 022372 215 GDGRKGW---P--EFAPYDAIHVGAAAP 237 (298)
Q Consensus 215 gD~~~~~---~--~~~~fD~Ii~~~~~~ 237 (298)
+|..+.. . ...+||.|+++.+..
T Consensus 82 ~d~~~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 82 VSYREADFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEcCccc
Confidence 9976531 1 114799999988764
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=97.93 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||||||+|..+..+++.. |..+++++|+ +.+++.|++ .++++++.+|..+..+ .||
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~~---~~D 253 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFKSIP---SAD 253 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTTCCC---CCS
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCCCCC---Cce
Confidence 4566899999999999999999985 6679999999 788876643 1469999999877332 499
Q ss_pred EEEECCCCch--------hHHHHHhcccc---CcEEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKP---GGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~Lkp---GG~Lvi~ 256 (298)
+|++...+++ +.+++.+.||| ||++++.
T Consensus 254 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 254 AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 9999998753 44778899999 9999984
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=100.84 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=101.4
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC----------------------------------
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---------------------------------- 174 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---------------------------------- 174 (298)
+.....+.+.+.++.... .+++..|||.+||+|.++..++....
T Consensus 170 ~~apl~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~ 247 (703)
T 3v97_A 170 GIAPIKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR 247 (703)
T ss_dssp CCCSSCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence 334455666777777665 67888999999999999988877631
Q ss_pred -------CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCc--------
Q 022372 175 -------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP-------- 237 (298)
Q Consensus 175 -------~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~-------- 237 (298)
+..+++|+|+++.+++.|++|+...++. +.+++.++|..+...+ .++||+|++|++.-
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~-----~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~ 322 (703)
T 3v97_A 248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIG-----ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPA 322 (703)
T ss_dssp HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHH
T ss_pred hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChhhCccccccCCCCEEEeCCCccccccchhH
Confidence 1247999999999999999999998764 5699999999875332 23899999998852
Q ss_pred --hhHH---HHHhccccCcEEEEEECCCc------eeEEEEEEcCCCCeEEE
Q 022372 238 --EIPQ---ALIDQLKPGGRMVIPVGNIF------QDLKVVDKNQDGSLSIW 278 (298)
Q Consensus 238 --~l~~---~l~~~LkpGG~Lvi~v~~~~------q~~~~~~~~~~g~~~~~ 278 (298)
.+.+ +..+.+.|||++++-.++.. .....-.+..+|.+...
T Consensus 323 l~~ly~~l~~~lk~~~~g~~~~ilt~~~~l~~~~glk~~k~~~l~nG~l~~~ 374 (703)
T 3v97_A 323 LIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCV 374 (703)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCHHHHHTTCCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeCCHHHHHHhCCCcccceeeecCCEEEE
Confidence 1222 33445568999999887632 11222233446666554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-08 Score=89.40 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD 228 (298)
+...+||-||.|.|..+..+.+. .+..+|+.+|++++.++.+++.+..... ..+..++++++.+|+...... .++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCC
Confidence 44579999999999999999887 3446999999999999999998754221 124458999999999986543 36899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECCC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|+++..- .+..+.+.+.|+|||+++...+..
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 99999752 356689999999999999866543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-09 Score=91.46 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~~ 225 (298)
+++|.+|||+|||. +++|+++.|++.|+++.. .+++++++|..+... +.+
T Consensus 10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----------~~~~~~~~d~~~~~~~~~~~~ 62 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----------NEGRVSVENIKQLLQSAHKES 62 (176)
T ss_dssp CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----------TTSEEEEEEGGGGGGGCCCSS
T ss_pred CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----------cCcEEEEechhcCccccCCCC
Confidence 78999999999986 139999999999998752 247889999876543 457
Q ss_pred CccEEEECCCCchh-------HHHHHhccccCcEEEEE
Q 022372 226 PYDAIHVGAAAPEI-------PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l-------~~~l~~~LkpGG~Lvi~ 256 (298)
+||+|++..+++++ .+++.+.|||||++++.
T Consensus 63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence 89999998776554 58899999999999994
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.2e-09 Score=91.90 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=76.2
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. +.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++ . ..+++
T Consensus 14 l~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~-~---------~~~v~ 79 (249)
T 3ftd_A 14 LVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI-G---------DERLE 79 (249)
T ss_dssp EECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS-C---------CTTEE
T ss_pred cCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc-c---------CCCeE
Confidence 345677888888886 778899999999999999999986 2 36999999999999999876 1 16899
Q ss_pred EEEcCCCCCCCCC--CCccEEEECCCCchhHHHHHhcc
Q 022372 212 VHVGDGRKGWPEF--APYDAIHVGAAAPEIPQALIDQL 247 (298)
Q Consensus 212 ~~~gD~~~~~~~~--~~fD~Ii~~~~~~~l~~~l~~~L 247 (298)
++++|+.+...+. ++| .|+.+.+..-...-+.++|
T Consensus 80 ~i~~D~~~~~~~~~~~~~-~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 80 VINEDASKFPFCSLGKEL-KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EECSCTTTCCGGGSCSSE-EEEEECCTTTHHHHHHHHH
T ss_pred EEEcchhhCChhHccCCc-EEEEECchhccHHHHHHHH
Confidence 9999998754331 133 7888887743333333333
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-09 Score=96.79 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=65.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCH-------HHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP-------ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~-------~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
..++.+|||+|||+|..+..+++. + .+|+++|+++ ++++.|+++...++.. ++++++++|..+..
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~-g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-----~ri~~~~~d~~~~l 152 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL-G--LTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-----ARINLHFGNAAEQM 152 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT-T--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-----TTEEEEESCHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh-C--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-----cCeEEEECCHHHHH
Confidence 556789999999999999999997 3 6899999999 9999999888766543 45999999987642
Q ss_pred C--CC--CCccEEEECCCCc
Q 022372 222 P--EF--APYDAIHVGAAAP 237 (298)
Q Consensus 222 ~--~~--~~fD~Ii~~~~~~ 237 (298)
+ .. ++||+|+++++.+
T Consensus 153 ~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 153 PALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHCCCSEEEECCCC-
T ss_pred HhhhccCCCccEEEECCCCC
Confidence 2 11 5799999998653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=100.05 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=92.3
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC--------------CcEEEEEeCCHHHHHHHH
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP--------------QGRAVGVEHIPELVVSSI 193 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~--------------~~~V~giD~s~~~l~~A~ 193 (298)
.|+..+.+.+...|.+.+. ..++ +|||.+||+|.+...+++.+.. ...++|+|+++.+++.|+
T Consensus 224 ~G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 224 GGQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp STTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred CCeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 3566677777778888775 4554 9999999999988777654310 258999999999999999
Q ss_pred HHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCccEEEECCCCch----------------------------------
Q 022372 194 QNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAPE---------------------------------- 238 (298)
Q Consensus 194 ~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD~Ii~~~~~~~---------------------------------- 238 (298)
.|+...+.. .++.+.++|..... ....+||+|+++++...
T Consensus 301 ~Nl~l~gi~-----~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~ 375 (544)
T 3khk_A 301 MNMVIRGID-----FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF 375 (544)
T ss_dssp HHHHHTTCC-----CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH
T ss_pred HHHHHhCCC-----cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH
Confidence 998876653 34445778876532 23468999999987631
Q ss_pred -hHHHHHhccccCcEEEEEECC
Q 022372 239 -IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 239 -l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+.+.+.|||||++++.+++
T Consensus 376 ~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 376 AWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp HHHHHHHHTEEEEEEEEEEEET
T ss_pred HHHHHHHHHhccCceEEEEecc
Confidence 236678999999999887764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.5e-09 Score=99.36 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh--ccCCccCCCCEEEEEcCCCCCCCC--C
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS--AAAPLLKEGSLSVHVGDGRKGWPE--F 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~--~~~~~l~~~~v~~~~gD~~~~~~~--~ 224 (298)
+.+|.+|||+|||+|..+..+++.. .+|+++|+++.+++.|++|+... +. .+++++++|+.+.... .
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~~~~ 161 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPLIKT 161 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHHHHH
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhhccC
Confidence 5568999999999999999999873 69999999999999999999876 43 5899999998764322 2
Q ss_pred CCccEEEECCCC
Q 022372 225 APYDAIHVGAAA 236 (298)
Q Consensus 225 ~~fD~Ii~~~~~ 236 (298)
++||+|+++++.
T Consensus 162 ~~fDvV~lDPPr 173 (410)
T 3ll7_A 162 FHPDYIYVDPAR 173 (410)
T ss_dssp HCCSEEEECCEE
T ss_pred CCceEEEECCCC
Confidence 589999999764
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.3e-09 Score=93.35 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=70.8
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..|.+...+++.+. +.++++|||||||+|.+|. +++ +...+|+++|+++++++.+++++... ++++
T Consensus 4 L~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~--------~~v~ 70 (252)
T 1qyr_A 4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG--------PKLT 70 (252)
T ss_dssp ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG--------GGEE
T ss_pred cCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC--------CceE
Confidence 345778888999886 7888999999999999999 654 32233999999999999998876431 5899
Q ss_pred EEEcCCCCCCCCC-----CCccEEEECCCC
Q 022372 212 VHVGDGRKGWPEF-----APYDAIHVGAAA 236 (298)
Q Consensus 212 ~~~gD~~~~~~~~-----~~fD~Ii~~~~~ 236 (298)
++++|+.+...+. +..|.|+++.+.
T Consensus 71 ~i~~D~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 71 IYQQDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred EEECchhhCCHHHhhcccCCceEEEECCCC
Confidence 9999987743211 134788888875
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=93.76 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=97.3
Q ss_pred CCCccChHHHHHHHHHHHHcc--CCCCCEEEEEcCCCcHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 128 YNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~--l~~g~~VLDiG~GsG~~t~~La~~~g--~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
.|+..+.+.+...|.+.+... ..++.+|+|.+||+|.+...+++.+. ....++|+|+++.+++.|+.|+...+.
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-- 273 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV-- 273 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC--
Confidence 356666667777777777632 24678999999999999988888753 236899999999999999999877654
Q ss_pred ccCCCCEEEEEcCCCCC-CC--CCCCccEEEECCCCc------------------h-----------hHHHHHhccc-cC
Q 022372 204 LLKEGSLSVHVGDGRKG-WP--EFAPYDAIHVGAAAP------------------E-----------IPQALIDQLK-PG 250 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~-~~--~~~~fD~Ii~~~~~~------------------~-----------l~~~l~~~Lk-pG 250 (298)
...++.+.++|.... ++ ...+||+|+++++.. . ....+.+.|| +|
T Consensus 274 --~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g 351 (542)
T 3lkd_A 274 --PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN 351 (542)
T ss_dssp --CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred --CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence 224788999998764 22 346899999998751 0 2366778999 99
Q ss_pred cEEEEEECCC
Q 022372 251 GRMVIPVGNI 260 (298)
Q Consensus 251 G~Lvi~v~~~ 260 (298)
|++.+.++++
T Consensus 352 Gr~a~VlP~g 361 (542)
T 3lkd_A 352 GVMAIVLPHG 361 (542)
T ss_dssp CEEEEEEETH
T ss_pred eeEEEEecch
Confidence 9998877653
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-08 Score=88.79 Aligned_cols=106 Identities=21% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHc------CCC-----cEEEEEeCCH---HH-----------HHHHHHHHHHhccC--
Q 022372 150 KPGMHALDIGSGTGYLTACFALMV------GPQ-----GRAVGVEHIP---EL-----------VVSSIQNIEKSAAA-- 202 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~------g~~-----~~V~giD~s~---~~-----------l~~A~~~~~~~~~~-- 202 (298)
+++.+|||+|+|+|+.++.+++.+ .|+ .+++++|..+ +. .+.|++.+..+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 355799999999999999887764 453 5899999887 33 34566665543110
Q ss_pred ----Ccc--CCCCEEEEEcCCCCCCCCC-----CCccEEEECCCC---------chhHHHHHhccccCcEEEE
Q 022372 203 ----PLL--KEGSLSVHVGDGRKGWPEF-----APYDAIHVGAAA---------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 203 ----~~l--~~~~v~~~~gD~~~~~~~~-----~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi 255 (298)
..+ +..+++++.+|+.+.++.. ++||+|+.++.. .++.+.+.++|||||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 001 1246789999987644321 279999998632 2466899999999999986
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=96.26 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=85.5
Q ss_pred CCccChHHHHHHHHHH----HHccCCCCCEEEEEcCCCcHHHHHHHHHcCC--CcEEEEEeCCHHHHHHH--HHHHHHhc
Q 022372 129 NATISAPHMHATCLQL----LEENLKPGMHALDIGSGTGYLTACFALMVGP--QGRAVGVEHIPELVVSS--IQNIEKSA 200 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~----L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~--~~~V~giD~s~~~l~~A--~~~~~~~~ 200 (298)
|+..+.+.+...|... +....+++.+|||.|||+|.+...+++.++. ..+++|+|+++.+++.| +.++..+.
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 4555556666666665 2222346889999999999999999987631 25799999999999999 44443322
Q ss_pred cCCccCCCCEEEEEcCCCCC-CCCCCCccEEEECCCCch-----------------------------------hHHHHH
Q 022372 201 AAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAPE-----------------------------------IPQALI 244 (298)
Q Consensus 201 ~~~~l~~~~v~~~~gD~~~~-~~~~~~fD~Ii~~~~~~~-----------------------------------l~~~l~ 244 (298)
.. -+.....+...|.... ......||+|+++++.-. +.+.+.
T Consensus 375 Ll--hGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al 452 (878)
T 3s1s_A 375 LV--SSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT 452 (878)
T ss_dssp TC--BTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred hh--cCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence 21 1112334455554432 112368999999998710 124466
Q ss_pred hccccCcEEEEEECC
Q 022372 245 DQLKPGGRMVIPVGN 259 (298)
Q Consensus 245 ~~LkpGG~Lvi~v~~ 259 (298)
+.||+||++++-+++
T Consensus 453 ~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 453 ELVQDGTVISAIMPK 467 (878)
T ss_dssp HHSCTTCEEEEEEET
T ss_pred HhcCCCcEEEEEECh
Confidence 789999999997765
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=85.33 Aligned_cols=102 Identities=8% Similarity=0.048 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHh
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIP--------------------------ELVVSSIQNIEKS 199 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g----~~~~V~giD~s~--------------------------~~l~~A~~~~~~~ 199 (298)
.....|||+|+..|+.+..+++.+. ++++++++|..+ ..++.+++++++.
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3346999999999999999987753 357899999642 1467789999887
Q ss_pred ccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCc----hhHHHHHhccccCcEEEE
Q 022372 200 AAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 200 ~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi 255 (298)
++ ..++++++.|++.+..+. .++||+|+.++... ...+.+...|+|||++++
T Consensus 185 gl----~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 185 DL----LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp TC----CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC----CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 64 126899999998764432 35899999999872 235778899999999986
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-08 Score=87.62 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=67.7
Q ss_pred HHHHHHccCCCC--CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC--C-CCEEEEEc
Q 022372 141 CLQLLEENLKPG--MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK--E-GSLSVHVG 215 (298)
Q Consensus 141 ~l~~L~~~l~~g--~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~--~-~~v~~~~g 215 (298)
+.+.+. ++++ .+|||+|||+|..+..+++.. ++|+++|+++.+++.++++++.......++ . .+++++++
T Consensus 78 l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 344554 5667 899999999999999999983 579999999999888887775432111111 1 47999999
Q ss_pred CCCCCCCC-CCCccEEEECCCCc
Q 022372 216 DGRKGWPE-FAPYDAIHVGAAAP 237 (298)
Q Consensus 216 D~~~~~~~-~~~fD~Ii~~~~~~ 237 (298)
|..+.... .++||+|+++++.+
T Consensus 153 D~~~~L~~~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 153 SSLTALTDITPRPQVVYLDPMFP 175 (258)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCC
T ss_pred CHHHHHHhCcccCCEEEEcCCCC
Confidence 98753321 13799999998764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=94.50 Aligned_cols=95 Identities=20% Similarity=0.143 Sum_probs=70.9
Q ss_pred CEEEEEcCCCcHH---HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 153 MHALDIGSGTGYL---TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~---t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
..|||||||+|-+ ++..++..+...+|++||.++ +...|++..+.+++. ++|+++++|..+...+ +++|+
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-----dkVtVI~gd~eev~LP-EKVDI 431 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-----SQVTVVSSDMREWVAP-EKADI 431 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-----GGEEEEESCTTTCCCS-SCEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-----CeEEEEeCcceeccCC-cccCE
Confidence 4799999999998 444444433333799999997 566788888888775 7899999999886555 68999
Q ss_pred EEECCC----C-c---hhHHHHHhccccCcEEE
Q 022372 230 IHVGAA----A-P---EIPQALIDQLKPGGRMV 254 (298)
Q Consensus 230 Ii~~~~----~-~---~l~~~l~~~LkpGG~Lv 254 (298)
|++--. + + ++.....+.|||||+++
T Consensus 432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 987642 1 2 33355568999999874
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=83.68 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=91.3
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC------------CcEEEEEeCCHHHHHHHHHH
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP------------QGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~------------~~~V~giD~s~~~l~~A~~~ 195 (298)
.|+..+.+++...|.+.+. ..++.+|+|-+||+|.+.....+.+.. ...++|.|+++.....|+-|
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred CceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 4677777788888888886 778889999999999988777654421 13699999999999999998
Q ss_pred HHHhccCCccCCCCEEEEEcCCCCCC----CCCCCccEEEECCCCch----------------------hHHHHHhccc-
Q 022372 196 IEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGAAAPE----------------------IPQALIDQLK- 248 (298)
Q Consensus 196 ~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~fD~Ii~~~~~~~----------------------l~~~l~~~Lk- 248 (298)
+--++. +...+..+|..... .+..+||+|++++++-. ..+.+.+.||
T Consensus 274 l~lhg~------~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 347 (530)
T 3ufb_A 274 LLLHGL------EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKR 347 (530)
T ss_dssp HHHHTC------SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCC
T ss_pred HHhcCC------ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhh
Confidence 877664 34466778876432 12247999999998720 1144556665
Q ss_pred ------cCcEEEEEECC
Q 022372 249 ------PGGRMVIPVGN 259 (298)
Q Consensus 249 ------pGG~Lvi~v~~ 259 (298)
+||++.+.+++
T Consensus 348 ~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 348 PGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp TTSSSSSCCEEEEEEEH
T ss_pred hhhccCCCceEEEEecc
Confidence 79999987764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.8e-07 Score=83.47 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc--CCccCCCCEEEEEcCCCCCCC----C
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA--APLLKEGSLSVHVGDGRKGWP----E 223 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~--~~~l~~~~v~~~~gD~~~~~~----~ 223 (298)
.+..+||-+|.|.|.....+.+. ++ .+|+.+|++++.++.|++.+....- ......++++++.+|+..... .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 45689999999999999998886 44 6999999999999999987632110 000112568999999875432 2
Q ss_pred CCCccEEEECCCC----------------chhHHHHHhccccCcEEEEEEC
Q 022372 224 FAPYDAIHVGAAA----------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 224 ~~~fD~Ii~~~~~----------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.++||+|+++..- .+..+.+.+.|+|||+++...+
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 3579999998421 1234678899999999998544
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=71.58 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCc-HHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG-~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+|...+.+.+.....++.+|||||||+| ..+..|++..+ ..|+++|+++..++ ++.
T Consensus 20 ~m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~---------------------~v~ 76 (153)
T 2k4m_A 20 HMWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG---------------------IVR 76 (153)
T ss_dssp HHHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT---------------------EEC
T ss_pred hHHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc---------------------eEE
Confidence 4555666666656777789999999999 59999997433 58999999875433 677
Q ss_pred cCCCCCCCCC-CCccEEEECCCCchhHHHHHhccc-cCcEEEE-EECC
Q 022372 215 GDGRKGWPEF-APYDAIHVGAAAPEIPQALIDQLK-PGGRMVI-PVGN 259 (298)
Q Consensus 215 gD~~~~~~~~-~~fD~Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi-~v~~ 259 (298)
.|..+...+. ..||+|++..+-+++...+.++-| -|.-+++ |+++
T Consensus 77 dDiF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~ 124 (153)
T 2k4m_A 77 DDITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTG 124 (153)
T ss_dssp CCSSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTT
T ss_pred ccCCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 8877654321 479999888888888777666544 4666655 5544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=88.17 Aligned_cols=97 Identities=18% Similarity=0.085 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCcHHHHHH---HHHcC---------CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 152 GMHALDIGSGTGYLTACF---ALMVG---------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~L---a~~~g---------~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
+..|||||||+|-++... ++..+ ...+|++||.++.++...+.+.. +++. ++|+++.+|..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~-----d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK-----RRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT-----TCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC-----CeEEEEeCchhh
Confidence 457999999999997432 22122 22499999999987766555543 5554 679999999987
Q ss_pred CCCC-----CCCccEEEECCCC--------chhHHHHHhccccCcEEE
Q 022372 220 GWPE-----FAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 220 ~~~~-----~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lv 254 (298)
...+ .++.|+|++-..- ++....+.+.|||||.++
T Consensus 484 v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5331 3689999887541 134455568999999864
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-06 Score=76.79 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|-+...+++.|. ++++..++|.+||.|..+..+++. +++|+|+|.++.+++.|++ +.. +++++++
T Consensus 8 pVLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~ 72 (285)
T 1wg8_A 8 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---------PGLTVVQ 72 (285)
T ss_dssp CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---------TTEEEEE
T ss_pred hHHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---------CCEEEEE
Confidence 345778888887 889999999999999999999997 3799999999999999987 532 5899999
Q ss_pred cCCCCCC---C--CCCCccEEEECCCCc
Q 022372 215 GDGRKGW---P--EFAPYDAIHVGAAAP 237 (298)
Q Consensus 215 gD~~~~~---~--~~~~fD~Ii~~~~~~ 237 (298)
++..+.. . ..+++|.|+.+.+..
T Consensus 73 ~~f~~l~~~L~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 73 GNFRHLKRHLAALGVERVDGILADLGVS 100 (285)
T ss_dssp SCGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CCcchHHHHHHHcCCCCcCEEEeCCccc
Confidence 9987531 1 124799999987764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-06 Score=75.39 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=67.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|..+.++++.. +...++++|+..++...... . ...+ .++....++........++|
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~-----~--~~~g-~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMN-----V--QSLG-WNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCC-----C--CBTT-GGGEEEECSCCTTTSCCCCC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccc-----c--CcCC-CCeEEEeccceehhcCCCCc
Confidence 47888999999999999999988763 22578888887543111000 0 0011 14444565543323334789
Q ss_pred cEEEECCCCc----h--------hHHHHHhccccC-cEEEEEECC
Q 022372 228 DAIHVGAAAP----E--------IPQALIDQLKPG-GRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~----~--------l~~~l~~~LkpG-G~Lvi~v~~ 259 (298)
|+|+++.+.. . +.+.+.+.|||| |.+++-+-.
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9999998553 1 224556899999 999998866
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=74.70 Aligned_cols=74 Identities=22% Similarity=0.176 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+++|++|||+||++|..|..++++. ++|++||+.+- -.. +. ..++|+++.+|+....+..++|
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l-~~~----l~--------~~~~V~~~~~d~~~~~~~~~~~ 271 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPM-AQS----LM--------DTGQVTWLREDGFKFRPTRSNI 271 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCC-CHH----HH--------TTTCEEEECSCTTTCCCCSSCE
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhc-Chh----hc--------cCCCeEEEeCccccccCCCCCc
Confidence 37899999999999999999999873 69999997642 111 11 1278999999998877766789
Q ss_pred cEEEECCCCc
Q 022372 228 DAIHVGAAAP 237 (298)
Q Consensus 228 D~Ii~~~~~~ 237 (298)
|+|+|+.+..
T Consensus 272 D~vvsDm~~~ 281 (375)
T 4auk_A 272 SWMVCDMVEK 281 (375)
T ss_dssp EEEEECCSSC
T ss_pred CEEEEcCCCC
Confidence 9999999874
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=74.62 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|-+...+++.|. +++|..++|..+|.|..+..+++.++++++|+|+|.++++++.|+ ++ ...++++++
T Consensus 43 pVLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---------~~~Rv~lv~ 110 (347)
T 3tka_A 43 TVLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---------DDPRFSIIH 110 (347)
T ss_dssp CTTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---------CCTTEEEEE
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---------cCCcEEEEe
Confidence 345677888887 889999999999999999999998888899999999999999984 43 126899999
Q ss_pred cCCCCCC---CC---CCCccEEEECCCC
Q 022372 215 GDGRKGW---PE---FAPYDAIHVGAAA 236 (298)
Q Consensus 215 gD~~~~~---~~---~~~fD~Ii~~~~~ 236 (298)
++..+.. .. .+++|.|+.+.+.
T Consensus 111 ~nF~~l~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 111 GPFSALGEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp SCGGGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred CCHHHHHHHHHhcCCCCcccEEEECCcc
Confidence 9876521 11 1369999988763
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.6e-05 Score=71.43 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|..+.++++.. +...|+|+|+...+...+... ...+ .++.....+.........++
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-------~~~g-~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-------TTLG-WNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-------CBTT-GGGEEEECSCCGGGSCCCCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-------ccCC-CceEEeeCCcchhhcCCCCc
Confidence 47889999999999999999988754 335799999976532222100 0011 13333332221111233689
Q ss_pred cEEEECCCCc------------hhHHHHHhccccC--cEEEEEECC
Q 022372 228 DAIHVGAAAP------------EIPQALIDQLKPG--GRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~------------~l~~~l~~~LkpG--G~Lvi~v~~ 259 (298)
|+|+++.+.. .+.+-+.+.|||| |.+++-+-.
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 9999998753 1223445789999 999998766
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=67.47 Aligned_cols=79 Identities=9% Similarity=-0.089 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHH-------------c---CCCcEEEEEeCC-----------HHHHHHHHHHHHHhccCCc
Q 022372 152 GMHALDIGSGTGYLTACFALM-------------V---GPQGRAVGVEHI-----------PELVVSSIQNIEKSAAAPL 204 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~-------------~---g~~~~V~giD~s-----------~~~l~~A~~~~~~~~~~~~ 204 (298)
..+|+|+||++|..|..+... . .|.-+|+..|.. +.+.+..++. .+..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~-- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRK-- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCC--
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCC--
Confidence 478999999999999887765 1 244678888977 4333332221 1110
Q ss_pred cCCCCEEEEEcCCCC---CCCCCCCccEEEECCCCch
Q 022372 205 LKEGSLSVHVGDGRK---GWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 205 l~~~~v~~~~gD~~~---~~~~~~~fD~Ii~~~~~~~ 238 (298)
.+..++.|.... -..+.+++|+|+++.++++
T Consensus 128 ---~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHW 161 (384)
T 2efj_A 128 ---IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHW 161 (384)
T ss_dssp ---TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTB
T ss_pred ---CCceEEEecchhhhhccCCCCceEEEEecceeee
Confidence 123455555433 3345589999999999865
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=65.42 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
.+...+++.+ -.+|+.|||++||+|..+..++++ + .+++|+|+++++++.|++++...
T Consensus 223 ~l~~~~i~~~---~~~~~~vlD~f~GsGt~~~~a~~~-g--~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMF---SFVGDVVLDPFAGTGTTLIAAARW-G--RRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHH---CCTTCEEEETTCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHHh
Confidence 4555566554 468899999999999999998886 3 68999999999999999998764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00031 Score=65.87 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCcHHHHHHHH--------Hc------CCCcEEEEEeCCHHHHHHHHHHHHHhcc-------CCccCCC-C
Q 022372 152 GMHALDIGSGTGYLTACFAL--------MV------GPQGRAVGVEHIPELVVSSIQNIEKSAA-------APLLKEG-S 209 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~--------~~------g~~~~V~giD~s~~~l~~A~~~~~~~~~-------~~~l~~~-~ 209 (298)
..+|+|+|||+|..|..+.. .. .|.-+|+..|....--...=+.+..... ......+ .
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 57899999999999988732 21 1456788888766543332222221100 0000001 1
Q ss_pred -EEEEEcCCCCCCCCCCCccEEEECCCCchhH--------------------------------------------HHHH
Q 022372 210 -LSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--------------------------------------------QALI 244 (298)
Q Consensus 210 -v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l~--------------------------------------------~~l~ 244 (298)
+.-+-+....-..+.++||+|+++.+++++. +...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333344558999999999986532 2347
Q ss_pred hccccCcEEEEEEC
Q 022372 245 DQLKPGGRMVIPVG 258 (298)
Q Consensus 245 ~~LkpGG~Lvi~v~ 258 (298)
+.|+|||++++.+.
T Consensus 213 ~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 213 AEVKRGGAMFLVCL 226 (374)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEe
Confidence 89999999999885
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.8e-05 Score=68.95 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHH--cCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCc-cCCCCEEEEEc-CCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALM--VGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPL-LKEGSLSVHVG-DGRKGWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~--~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~-l~~~~v~~~~g-D~~~~~~ 222 (298)
.++||.+|+|+||+.|..+.++++. ++. .+.++++|... ...... .+..-+.+..+ |+.+.
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~------------~P~~~~~~Gv~~i~~~~G~Df~~~-- 135 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHE------------EPMLMQSYGWNIVTMKSGVDVFYK-- 135 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSC------------CCCCCCSTTGGGEEEECSCCGGGS--
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccccc------------CCCcccCCCceEEEeeccCCccCC--
Confidence 5789999999999999999999987 422 24455555200 000000 01122355557 87763
Q ss_pred CCCCccEEEECCCCc------------hhHHHHHhccccCc-EEEEEECCC
Q 022372 223 EFAPYDAIHVGAAAP------------EIPQALIDQLKPGG-RMVIPVGNI 260 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG-~Lvi~v~~~ 260 (298)
+..++|+|+|+.+.. ...+-+.+.|+||| .+++-+-.+
T Consensus 136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 235799999998641 12233557899999 888876544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=67.02 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=63.3
Q ss_pred ccChHHHHHHHHHHHHccCC------CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCc
Q 022372 131 TISAPHMHATCLQLLEENLK------PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~l~------~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~ 204 (298)
.+..+.+...+++.+. +. +++.|||||.|.|.+|..|++...+ .+|+++|+++.++...++.. .
T Consensus 34 FL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~-~------ 103 (353)
T 1i4w_A 34 YLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF-E------ 103 (353)
T ss_dssp CBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT-T------
T ss_pred ccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc-c------
Confidence 4467888899999986 54 3689999999999999999987433 58999999999999888765 2
Q ss_pred cCCCCEEEEEcCCCC
Q 022372 205 LKEGSLSVHVGDGRK 219 (298)
Q Consensus 205 l~~~~v~~~~gD~~~ 219 (298)
.++++++.+|+.+
T Consensus 104 --~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 104 --GSPLQILKRDPYD 116 (353)
T ss_dssp --TSSCEEECSCTTC
T ss_pred --CCCEEEEECCccc
Confidence 1689999999964
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0002 Score=64.65 Aligned_cols=103 Identities=14% Similarity=0.018 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+||++|..+.++++..+ -..|+|+|+.......... ...++.+-+.+. .+........+++
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-------~~~~~~~iv~~~-~~~di~~l~~~~~ 148 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-------MQTLGWNIVKFK-DKSNVFTMPTEPS 148 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-------CCBTTGGGEEEE-CSCCTTTSCCCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-------ccccCCceEEee-cCceeeecCCCCc
Confidence 467899999999999999999998643 2578999987532110000 000111223333 2211111233689
Q ss_pred cEEEECCCCc------------hhHHHHHhccccC-cEEEEEECC
Q 022372 228 DAIHVGAAAP------------EIPQALIDQLKPG-GRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~------------~l~~~l~~~LkpG-G~Lvi~v~~ 259 (298)
|+|+++.+.. .+.+-+.+.|+|| |.+++-+-.
T Consensus 149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 9999997753 1234456789999 999998765
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00033 Score=61.42 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=71.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~ 226 (298)
.++++.+|+|+||++|..+.+.+...+. .+|+|+|+-..-.+. ......++.+.++|+.+ |+....+ .+
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~ghe~-------P~~~~s~gwn~v~fk~gvDv~~~~~--~~ 144 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGHEE-------PVPMSTYGWNIVKLMSGKDVFYLPP--EK 144 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCC-------CCCCCCTTTTSEEEECSCCGGGCCC--CC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCccC-------cchhhhcCcCceEEEeccceeecCC--cc
Confidence 4789999999999999999998887654 589999987643210 00112345578999998 8644333 67
Q ss_pred ccEEEECCCCc------------hhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|.|+|+-+-. .+.+-+.++|++ |-+++-+=.+
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 99999997641 122344578888 7777766443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.48 E-value=5.6e-05 Score=70.52 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHH---------------cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 152 GMHALDIGSGTGYLTACFALM---------------VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~---------------~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
..+|+|+||++|..|..+... -.|.-+|+..|.........-+.+.... ...+..++.|.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-----~~~~~~f~~gv 126 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-----DVDGVCFINGV 126 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-----SCTTCEEEEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-----ccCCCEEEEec
Confidence 367999999999887665433 1345689999988877776655543211 00122444443
Q ss_pred ---CCCCCCCCCCccEEEECCCCchhH---------------------------------------HHHHhccccCcEEE
Q 022372 217 ---GRKGWPEFAPYDAIHVGAAAPEIP---------------------------------------QALIDQLKPGGRMV 254 (298)
Q Consensus 217 ---~~~~~~~~~~fD~Ii~~~~~~~l~---------------------------------------~~l~~~LkpGG~Lv 254 (298)
...-..+.+++|.|+++.+++++. +.-.+.|+|||+++
T Consensus 127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv 206 (359)
T 1m6e_X 127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 333445558999999999876532 23378899999999
Q ss_pred EEEC
Q 022372 255 IPVG 258 (298)
Q Consensus 255 i~v~ 258 (298)
+.+.
T Consensus 207 l~~~ 210 (359)
T 1m6e_X 207 LTIL 210 (359)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0011 Score=61.36 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=70.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||.+|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++..+..+ .
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~l----Ga------~--~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL----GA------T--HVINSKTQDPVAAIKE 253 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH----TC------S--EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----CC------C--EEecCCccCHHHHHHH
Confidence 478999999999987 8889999988753 3799999999998888642 21 1 122211111 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
... +.+|+|+.........+...+.|++||++++ ++
T Consensus 254 ~~~-gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G 289 (371)
T 1f8f_A 254 ITD-GGVNFALESTGSPEILKQGVDALGILGKIAV-VG 289 (371)
T ss_dssp HTT-SCEEEEEECSCCHHHHHHHHHTEEEEEEEEE-CC
T ss_pred hcC-CCCcEEEECCCCHHHHHHHHHHHhcCCEEEE-eC
Confidence 112 3699999888877788899999999999987 44
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00024 Score=64.10 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcC------CCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 149 LKPGMHALDIGS------GTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 149 l~~g~~VLDiG~------GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
++.|++|||+|+ -.|. ..+.+. +|. +.|+++|+.+-. .... .+++||.....
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS--~VLr~~-~p~g~~VVavDL~~~~-----------------sda~-~~IqGD~~~~~ 165 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGT--AVLRQW-LPTGTLLVDSDLNDFV-----------------SDAD-STLIGDCATVH 165 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHH-SCTTCEEEEEESSCCB-----------------CSSS-EEEESCGGGEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcH--HHHHHh-CCCCcEEEEeeCcccc-----------------cCCC-eEEEccccccc
Confidence 467899999997 3455 344455 665 599999987521 0123 45899975533
Q ss_pred CCCCCccEEEECCCC-------------chhH----HHHHhccccCcEEEEEECCC
Q 022372 222 PEFAPYDAIHVGAAA-------------PEIP----QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~-------------~~l~----~~l~~~LkpGG~Lvi~v~~~ 260 (298)
. .++||+|+++.+. ..+. +-+.+.|+|||.+++-+-.+
T Consensus 166 ~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 166 T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp E-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred c-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 3 3789999999763 1123 34567899999999988544
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00047 Score=63.39 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=70.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+++|++||-+|+|. |..+..+++..| .+|+++|.+++..+.+++ .+. +.+ + .+. +.. . ..
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~~v--~-~~~-~~~-~-~~ 234 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS----MGV------KHF--Y-TDP-KQC-K-EE 234 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH----TTC------SEE--E-SSG-GGC-C-SC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh----cCC------Cee--c-CCH-HHH-h-cC
Confidence 488999999999987 888999999876 589999999998888754 221 222 2 222 111 1 27
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+|+.........+...+.|+++|+++. ++.
T Consensus 235 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G~ 266 (348)
T 3two_A 235 LDFIISTIPTHYDLKDYLKLLTYNGDLAL-VGL 266 (348)
T ss_dssp EEEEEECCCSCCCHHHHHTTEEEEEEEEE-CCC
T ss_pred CCEEEECCCcHHHHHHHHHHHhcCCEEEE-ECC
Confidence 99999888877788899999999999997 443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00072 Score=62.24 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=69.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||-+|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++..+..+ .
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~l----Ga------~--~vi~~~~~~~~~~v~~ 229 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIALEY----GA------T--DIINYKNGDIVEQILK 229 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHHHH----TC------C--EEECGGGSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CC------c--eEEcCCCcCHHHHHHH
Confidence 388999999999987 8888999988653 3799999999988888653 21 1 122111111 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+|+.........+...+.|++||+++.
T Consensus 230 ~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 230 ATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp HTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEE
T ss_pred HcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 11224699999888877888999999999999987
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00056 Score=61.73 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=69.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~ 226 (298)
.++++.+|||+||++|..+.+.+...+. .+|+|+|+-..-.+. ...-..++.+.|.+..+ |+....+ .+
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~-------P~~~~ql~w~lV~~~~~~Dv~~l~~--~~ 160 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEE-------PQLVQSYGWNIVTMKSGVDVFYRPS--EC 160 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCC-------CCCCCBTTGGGEEEECSCCTTSSCC--CC
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccC-------cchhhhcCCcceEEEeccCHhhCCC--CC
Confidence 4788999999999999999988877554 489999986541110 00001123345888887 7655433 67
Q ss_pred ccEEEECCCCc------------hhHHHHHhccccC-cEEEEEECCC
Q 022372 227 YDAIHVGAAAP------------EIPQALIDQLKPG-GRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~~------------~l~~~l~~~LkpG-G~Lvi~v~~~ 260 (298)
+|.|+|+-+-. .+.+-+.++|++| |-+++-+=.+
T Consensus 161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 99999998731 1223345778888 8888877554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0018 Score=60.12 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=70.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||-.|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++.....+ .
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l----Ga------~--~vi~~~~~~~~~~i~~ 245 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEEV----GA------T--ATVDPSAGDVVEAIAG 245 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHHH----TC------S--EEECTTSSCHHHHHHS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CC------C--EEECCCCcCHHHHHHh
Confidence 488999999999987 8888999998763 3899999999988887652 22 1 111111000 0
Q ss_pred ---CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 ---WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
... +.+|+|+-........+...+.|++||++++ ++
T Consensus 246 ~~~~~~-gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~-~G 284 (370)
T 4ej6_A 246 PVGLVP-GGVDVVIECAGVAETVKQSTRLAKAGGTVVI-LG 284 (370)
T ss_dssp TTSSST-TCEEEEEECSCCHHHHHHHHHHEEEEEEEEE-CS
T ss_pred hhhccC-CCCCEEEECCCCHHHHHHHHHHhccCCEEEE-Ee
Confidence 112 3799999888877788899999999999987 44
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00088 Score=61.79 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=69.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC---CC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG---RK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~---~~---~ 220 (298)
.+++|++||.+|+|. |..+..+++..|. .+|+++|.+++..+.+++ .+. + .++..+. .+ .
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa------~--~vi~~~~~~~~~~~~~ 234 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE----IGA------D--LVLQISKESPQEIARK 234 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTC------S--EEEECSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCC------C--EEEcCcccccchHHHH
Confidence 488999999999987 8888999998753 389999999998888753 221 2 1222110 00 0
Q ss_pred ---CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 ---WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
... ..+|+|+.........+...+.|++||+++. ++
T Consensus 235 i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G 273 (356)
T 1pl8_A 235 VEGQLG-CKPEVTIECTGAEASIQAGIYATRSGGTLVL-VG 273 (356)
T ss_dssp HHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTTCEEEE-CS
T ss_pred HHHHhC-CCCCEEEECCCChHHHHHHHHHhcCCCEEEE-Ee
Confidence 011 4699999988877777888999999999987 44
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00091 Score=59.21 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
.+..++++.. ..+|+.|||..||+|..+....++ + .+++|+|+++..++.|++++...
T Consensus 200 ~l~~~~i~~~---~~~~~~vlD~f~GsGtt~~~a~~~-g--r~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 200 DLIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp HHHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHhc
Confidence 4455555554 578999999999999999888776 3 69999999999999999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0016 Score=60.08 Aligned_cols=97 Identities=16% Similarity=0.029 Sum_probs=71.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-----C--
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----K-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-----~-- 219 (298)
.+++|++||-+|+|. |..+..+++..|. .+|+++|.+++..+.+++. .. .-+.....+.. +
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l-~~---------~~~~~~~~~~~~~~~~~~v 244 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI-CP---------EVVTHKVERLSAEESAKKI 244 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH-CT---------TCEEEECCSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-ch---------hcccccccccchHHHHHHH
Confidence 488999999999987 8899999998763 2499999999999998764 21 12222211100 0
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+-........+...+.|++||++++
T Consensus 245 ~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~ 281 (363)
T 3m6i_A 245 VESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFV 281 (363)
T ss_dssp HHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred HHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEE
Confidence 011234799999988877788899999999999987
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0024 Score=58.72 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCC---C-
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKG---W- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~---~- 221 (298)
.+++|++||.+|+|. |..+..+++..| .+|+++|.+++..+.+++ .+. + .++..+. .+. .
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~~~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGA------D--VTLVVDPAKEEESSII 230 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTC------S--EEEECCTTTSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCC------C--EEEcCcccccHHHHHH
Confidence 488999999999976 888889998875 469999999998888763 221 2 1222110 110 0
Q ss_pred --CC---CCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 222 --PE---FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~---~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ...+|+|+.........+...+.|+++|+++. ++
T Consensus 231 ~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G 271 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLML-VG 271 (352)
T ss_dssp HHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE-CS
T ss_pred HHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE-Ee
Confidence 00 24699999988877778888999999999987 44
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00087 Score=61.32 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=70.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---C-
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---P- 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~- 222 (298)
.+++|++||..|+|. |..+..+++..| .+|+++|.+++..+.+++ .+. . .++.....+.. .
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~i~~~~~~~~~~~~~ 228 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR----LGA------E--VAVNARDTDPAAWLQK 228 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTC------S--EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCC------C--EEEeCCCcCHHHHHHH
Confidence 478999999999987 999999999876 589999999998888754 221 1 12221111100 0
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+.+|+|+.........+...+.|++||+++. ++.
T Consensus 229 ~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~-~G~ 264 (340)
T 3s2e_A 229 EIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIAL-NGL 264 (340)
T ss_dssp HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEE-CSC
T ss_pred hCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEE-eCC
Confidence 013689999888777888999999999999987 443
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0017 Score=60.89 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=68.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------ 220 (298)
.+++|++||.+|+|. |..+..+++..|. .+|+++|.+++.++.+++. + . +++.....+.
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l----G------a---~~i~~~~~~~~~~~~~ 247 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSDA----G------F---ETIDLRNSAPLRDQID 247 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHTT----T------C---EEEETTSSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----C------C---cEEcCCCcchHHHHHH
Confidence 488999999999987 8899999998763 3899999999988887531 1 1 2222111111
Q ss_pred -CCCCCCccEEEECCCCch--------------hHHHHHhccccCcEEEEEEC
Q 022372 221 -WPEFAPYDAIHVGAAAPE--------------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~--------------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......||+|+....... ..+...+.|++||++++ ++
T Consensus 248 ~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~-~G 299 (398)
T 2dph_A 248 QILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI-PG 299 (398)
T ss_dssp HHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC-CS
T ss_pred HHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE-ec
Confidence 011236999998876542 57888999999999886 44
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=61.43 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC---CCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG---RKGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~---~~~~~~ 223 (298)
.+++|++||.+|+|. |..+..+++..| .+|+++|.+++..+.+++ + +. . .++.... .....
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~-l---Ga------~--~vi~~~~~~~~~~~~- 255 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA-L---GA------D--EVVNSRNADEMAAHL- 255 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH-H---TC------S--EEEETTCHHHHHTTT-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------c--EEeccccHHHHHHhh-
Confidence 488999999999986 888889998875 479999999998888864 2 21 1 1121110 01111
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+|+|+.........+...+.|+++|+++. ++.
T Consensus 256 -~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~-~G~ 289 (369)
T 1uuf_A 256 -KSFDFILNTVAAPHNLDDFTTLLKRDGTMTL-VGA 289 (369)
T ss_dssp -TCEEEEEECCSSCCCHHHHHTTEEEEEEEEE-CCC
T ss_pred -cCCCEEEECCCCHHHHHHHHHHhccCCEEEE-ecc
Confidence 4799999888877778889999999999886 443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0037 Score=57.05 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=69.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||-.|+|. |.++..+++..|. ..++++|.+++.++.+++. +. . .++.....+ .
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~~l----Ga------~--~~i~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDISSEKLALAKSF----GA------M--QTFNSSEMSAPQMQSV 223 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----TC------S--EEEETTTSCHHHHHHH
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCC-cEEEEEechHHHHHHHHHc----CC------e--EEEeCCCCCHHHHHHh
Confidence 478999999999987 7788888888754 4688999999988888642 22 1 222221111 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+...+|+|+.........+...+.|++||++++
T Consensus 224 ~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~ 258 (346)
T 4a2c_A 224 LRELRFNQLILETAGVPQTVELAVEIAGPHAQLAL 258 (346)
T ss_dssp HGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEE
T ss_pred hcccCCcccccccccccchhhhhhheecCCeEEEE
Confidence 11224689999888888888899999999999987
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0013 Score=60.39 Aligned_cols=96 Identities=14% Similarity=0.011 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE----cCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV----GDGRKGWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~----gD~~~~~~~ 223 (298)
+ +|++||.+|+|. |..+..+++...+..+|+++|.+++..+.+++. +. +. ++. .+.......
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga------~~--vi~~~~~~~~~~~~~~ 235 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GA------DY--VSEMKDAESLINKLTD 235 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TC------SE--EECHHHHHHHHHHHHT
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CC------CE--EeccccchHHHHHhhc
Confidence 6 899999999976 888899998871125899999999988888642 21 11 111 010001111
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+|+|+.........+...+.|++||+++. ++
T Consensus 236 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~g 269 (344)
T 2h6e_A 236 GLGASIAIDLVGTEETTYNLGKLLAQEGAIIL-VG 269 (344)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHEEEEEEEEE-CC
T ss_pred CCCccEEEECCCChHHHHHHHHHhhcCCEEEE-eC
Confidence 23799999998887788899999999999887 44
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0053 Score=56.79 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=69.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~----- 220 (298)
.+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+. + .++..+. ...
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa------~--~vi~~~~~~~~~~~~i 254 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE----LGA------T--ECLNPKDYDKPIYEVI 254 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----TTC------S--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCC------c--EEEecccccchHHHHH
Confidence 478999999999987 8888999988763 389999999998888763 221 1 1121110 000
Q ss_pred --CCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 221 --WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 221 --~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
... +.+|+|+.........+...+.|+++ |+++. ++
T Consensus 255 ~~~t~-gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~-~G 293 (373)
T 1p0f_A 255 CEKTN-GGVDYAVECAGRIETMMNALQSTYCGSGVTVV-LG 293 (373)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE-CC
T ss_pred HHHhC-CCCCEEEECCCCHHHHHHHHHHHhcCCCEEEE-Ec
Confidence 012 37999998888777888999999999 99886 44
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0029 Score=58.43 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------ 220 (298)
.+++|++||-+|+|. |..+..+++..| .+|+++|.+++..+.+++. +. . .++..+..+.
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----Ga------~--~vi~~~~~~~~~~v~~ 251 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFAL----GA------D--HGINRLEEDWVERVYA 251 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH----TC------S--EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHc----CC------C--EEEcCCcccHHHHHHH
Confidence 478999999999887 888899999876 5899999999988887542 21 1 1222111110
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+|+.... ....+...+.|++||++++
T Consensus 252 ~~~g~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~ 285 (363)
T 3uog_A 252 LTGDRGADHILEIAG-GAGLGQSLKAVAPDGRISV 285 (363)
T ss_dssp HHTTCCEEEEEEETT-SSCHHHHHHHEEEEEEEEE
T ss_pred HhCCCCceEEEECCC-hHHHHHHHHHhhcCCEEEE
Confidence 012237999998877 5667788899999999987
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0048 Score=57.66 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=67.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++||.+|+|. |..+..+|+..|. .+|+++|.+++.++.+++. + . +.+.....+.+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~l----G------a---~~i~~~~~~~~~~~v~ 247 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ----G------F---EIADLSLDTPLHEQIA 247 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----T------C---EEEETTSSSCHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHc----C------C---cEEccCCcchHHHHHH
Confidence 488999999999987 8899999998753 3799999999998888541 1 1 22221111100
Q ss_pred --CCCCCccEEEECCCCc---------------hhHHHHHhccccCcEEEE
Q 022372 222 --PEFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+|+-..... ...+...+.|++||++++
T Consensus 248 ~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 248 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred HHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 1123699999887654 267888999999999976
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0011 Score=61.17 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-C---CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-K---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-~---~~~ 222 (298)
.+++|++||.+|+|. |..+..+++..| .+|++++.+++.++.+++ + +. . .++..+.. + ...
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~-l---Ga------~--~v~~~~~~~~~~~~~~ 241 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK-M---GA------D--HYIATLEEGDWGEKYF 241 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH-H---TC------S--EEEEGGGTSCHHHHSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH-c---CC------C--EEEcCcCchHHHHHhh
Confidence 488999999999976 888889998876 479999999998888765 2 21 1 12211111 1 111
Q ss_pred CCCCccEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 223 EFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+|+|+..... ....+...+.|++||+++. ++
T Consensus 242 --~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~-~g 276 (360)
T 1piw_A 242 --DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVS-IS 276 (360)
T ss_dssp --SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEE-CC
T ss_pred --cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEE-ec
Confidence 479999988776 5666788899999999886 44
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0022 Score=59.76 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC------CCC--
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD------GRK-- 219 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD------~~~-- 219 (298)
+++|++||.+|+|. |..+..+++..|. .+|++++.+++..+.+++ .+. . .++..+ ..+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~----lGa------~--~vi~~~~~~~~~~~~~v 259 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE----IGA------D--LTLNRRETSVEERRKAI 259 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH----TTC------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----cCC------c--EEEeccccCcchHHHHH
Confidence 67899999999876 8888899988642 389999999998888763 221 1 122211 000
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.......+|+|+.........+...+.|+++|+++. ++.
T Consensus 260 ~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~-~G~ 299 (380)
T 1vj0_A 260 MDITHGRGADFILEATGDSRALLEGSELLRRGGFYSV-AGV 299 (380)
T ss_dssp HHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEE-CCC
T ss_pred HHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEE-Eec
Confidence 011223699999988877788889999999999887 443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0019 Score=58.32 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+++|++||-.|+|. |..+..+++..| .+|++++ +++..+.+++. +. . .++ .| .+.. ...
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~l----Ga------~--~v~-~d-~~~v--~~g 199 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAKR----GV------R--HLY-RE-PSQV--TQK 199 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHHH----TE------E--EEE-SS-GGGC--CSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHHc----CC------C--EEE-cC-HHHh--CCC
Confidence 478999999999976 889999999876 4899999 88888887652 21 1 122 23 2222 367
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+|+|+-...-+.. ....+.|+++|+++..
T Consensus 200 ~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 200 YFAIFDAVNSQNA-AALVPSLKANGHIICI 228 (315)
T ss_dssp EEEEECC--------TTGGGEEEEEEEEEE
T ss_pred ccEEEECCCchhH-HHHHHHhcCCCEEEEE
Confidence 9999877665444 6778999999999884
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0031 Score=57.73 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=71.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------ 220 (298)
.+++|++||-+|+|. |..+..+++..+. .+|+++|.+++..+.+++. +. +. ++..+. +.
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~-~~Vi~~~~~~~~~~~~~~l----Ga------~~--~i~~~~-~~~~~v~~ 233 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSA-ARVIAVDLDDDRLALAREV----GA------DA--AVKSGA-GAADAIRE 233 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESCHHHHHHHHHT----TC------SE--EEECST-THHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----CC------CE--EEcCCC-cHHHHHHH
Confidence 478999999999987 8888999988633 6999999999998888642 21 21 222111 10
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
......+|+|+-........+...+.|++||++++ ++.
T Consensus 234 ~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~-~G~ 271 (345)
T 3jv7_A 234 LTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISV-VGI 271 (345)
T ss_dssp HHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEE-CSC
T ss_pred HhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEE-ECC
Confidence 01113799999988887788999999999999987 443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0059 Score=56.44 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=69.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~----- 220 (298)
.+++|++||.+|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++. .+....
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~l----Ga------~--~vi~~~~~~~~~~~~v 253 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF----GA------T--ECINPQDFSKPIQEVL 253 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH----TC------S--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----CC------c--eEeccccccccHHHHH
Confidence 478999999999876 8888999988753 3799999999988888642 21 1 1121 110000
Q ss_pred --CCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 221 --WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 221 --~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
... +.+|+|+.........+...+.|+++ |+++. ++
T Consensus 254 ~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~-~G 292 (373)
T 2fzw_A 254 IEMTD-GGVDYSFECIGNVKVMRAALEACHKGWGVSVV-VG 292 (373)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE-CS
T ss_pred HHHhC-CCCCEEEECCCcHHHHHHHHHhhccCCcEEEE-Ee
Confidence 011 36999998888777788999999999 99986 44
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0057 Score=56.62 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=69.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCCCC---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGWP--- 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~~~--- 222 (298)
.+++|++||.+|+|. |..+..+++..|. .+|+++|.+++..+.+++ .+. . .++.... ...+.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa------~--~vi~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKV----FGA------T--DFVNPNDHSEPISQVL 255 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTC------C--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCC------c--eEEeccccchhHHHHH
Confidence 478999999999876 8888899988653 389999999998888763 221 1 1121110 00000
Q ss_pred ---CCCCccEEEECCCCchhHHHHHhccccC-cEEEEEECC
Q 022372 223 ---EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVGN 259 (298)
Q Consensus 223 ---~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~~ 259 (298)
..+.+|+|+.........+...+.|++| |+++. ++.
T Consensus 256 ~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~-~G~ 295 (374)
T 1cdo_A 256 SKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVL-VGW 295 (374)
T ss_dssp HHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE-CSC
T ss_pred HHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEE-EcC
Confidence 0136999998888777888999999999 99887 443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0054 Score=56.82 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=69.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCCC----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGW---- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~~---- 221 (298)
.+++|++||-+|+|. |..+..+++..|. .+|+++|.+++..+.+++ .+. . .++.... ...+
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa------~--~vi~~~~~~~~~~~~v 258 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA----LGA------T--DCLNPRELDKPVQDVI 258 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTC------S--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCC------c--EEEccccccchHHHHH
Confidence 478999999999986 8888999998753 389999999998888753 221 1 1121110 0000
Q ss_pred ---CCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEECC
Q 022372 222 ---PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVGN 259 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~~ 259 (298)
.. +.+|+|+-........+...+.|++| |++++ ++.
T Consensus 259 ~~~~~-~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~-~G~ 298 (376)
T 1e3i_A 259 TELTA-GGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTV-VGA 298 (376)
T ss_dssp HHHHT-SCBSEEEESSCCHHHHHHHHHTBCTTTCEEEE-CCC
T ss_pred HHHhC-CCccEEEECCCCHHHHHHHHHHhhcCCCEEEE-ECC
Confidence 11 36999998888777788999999999 99986 443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0048 Score=56.37 Aligned_cols=95 Identities=24% Similarity=0.231 Sum_probs=68.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CCC--
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPE-- 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-~~~-- 223 (298)
.+++|++||.+|+|. |..+..+++..| .+|++++.+++.++.+++ .+. . .++ |..+. +.+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~~--d~~~~~~~~~~ 224 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKE----LGA------D--LVV--NPLKEDAAKFM 224 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC------S--EEE--CTTTSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCC------C--EEe--cCCCccHHHHH
Confidence 488999999999975 888888888765 589999999998888753 221 1 111 22111 000
Q ss_pred ---CCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 224 ---FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ---~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+|+|+.........+...+.|+++|+++. ++.
T Consensus 225 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~-~g~ 262 (339)
T 1rjw_A 225 KEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVL-VGL 262 (339)
T ss_dssp HHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEE-CCC
T ss_pred HHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE-ecc
Confidence 03699999988877788889999999999886 443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0051 Score=57.09 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=70.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~----- 220 (298)
.+++|++||-+|+|. |..+..+++..|. .+|+++|.+++.++.+++ .+. . .++.... ...
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~~----lGa------~--~vi~~~~~~~~~~~~i 256 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAKK----FGV------N--EFVNPKDHDKPIQEVI 256 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHHT----TTC------C--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCC------c--EEEccccCchhHHHHH
Confidence 478999999999986 8899999998763 379999999998888753 221 1 1221110 010
Q ss_pred --CCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 221 --WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 221 --~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
... +.+|+|+-........+...+.|++| |++++ ++
T Consensus 257 ~~~~~-gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~-~G 295 (378)
T 3uko_A 257 VDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVI-VG 295 (378)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE-CS
T ss_pred HHhcC-CCCCEEEECCCCHHHHHHHHHHhhccCCEEEE-Ec
Confidence 112 37999999888878889999999997 99887 44
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0059 Score=55.41 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEc-CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||-.| +|. |..+..+++..| .+|++++.+++..+.+++. +. . .++..+..+
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----Ga------~--~~~~~~~~~~~~~~~ 202 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKAL----GA------W--ETIDYSHEDVAKRVL 202 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH----TC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CC------C--EEEeCCCccHHHHHH
Confidence 478899999999 444 888888888876 5899999999988887642 21 1 122111111
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+..... ...+...+.|++||+++.
T Consensus 203 ~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~ 237 (325)
T 3jyn_A 203 ELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVS 237 (325)
T ss_dssp HHTTTCCEEEEEESSCG-GGHHHHHTTEEEEEEEEE
T ss_pred HHhCCCCceEEEECCCh-HHHHHHHHHhcCCCEEEE
Confidence 01122479999988776 667788999999999987
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.01 Score=54.03 Aligned_cols=95 Identities=21% Similarity=0.177 Sum_probs=66.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||-+|+|+ |.++..+++..+. .+|+++|.+++..+.+++. +. . .++.....+ .
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g-~~Vi~~~~~~~r~~~~~~~----Ga------~--~~i~~~~~~~~~~v~~ 226 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFG-AKVIAVDINQDKLNLAKKI----GA------D--VTINSGDVNPVDEIKK 226 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSC-CEEEEEESCHHHHHHHHHT----TC------S--EEEEC-CCCHHHHHHH
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCC-CEEEEEECcHHHhhhhhhc----CC------e--EEEeCCCCCHHHHhhh
Confidence 478999999999987 5566667765432 6999999999988777542 21 1 122111111 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|.++.............+.|+++|++++
T Consensus 227 ~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~ 261 (348)
T 4eez_A 227 ITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVA 261 (348)
T ss_dssp HTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEE
T ss_pred hcCCCCceEEEEeccCcchhheeheeecCCceEEE
Confidence 11224688888888888888899999999999887
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.009 Score=56.01 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=67.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||-+|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++..+..+ .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~l----Ga------~--~vi~~~~~~~~~~i~~ 276 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSEVRRNLAKEL----GA------D--HVIDPTKENFVEAVLD 276 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHHH----TC------S--EEECTTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CC------C--EEEcCCCCCHHHHHHH
Confidence 478999999999987 8888999998753 3899999999998888643 21 1 122111111 0
Q ss_pred CCCCCCccEEEECCCCc-hhHHHHHhcc----ccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAAP-EIPQALIDQL----KPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~-~l~~~l~~~L----kpGG~Lvi~v~~ 259 (298)
......+|+|+-..... ...+.+.+.| ++||++++ ++.
T Consensus 277 ~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~-~G~ 319 (404)
T 3ip1_A 277 YTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAI-VAR 319 (404)
T ss_dssp HTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEE-CSC
T ss_pred HhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEE-eCC
Confidence 11224699999887776 3555565666 99999987 554
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0068 Score=56.07 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=68.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~----- 220 (298)
.+++|++||.+|+|. |..+..+++..|. .+|+++|.+++..+.+++ .+. . .++..+. ...
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa------~--~vi~~~~~~~~~~~~~ 254 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKE----VGA------T--ECVNPQDYKKPIQEVL 254 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTC------S--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCC------c--eEecccccchhHHHHH
Confidence 478999999999887 8888899988652 389999999998888753 221 1 1121110 000
Q ss_pred --CCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 221 --WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 221 --~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
... +.+|+|+.........+...+.|+++ |++++ ++
T Consensus 255 ~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~-~G 293 (374)
T 2jhf_A 255 TEMSN-GGVDFSFEVIGRLDTMVTALSCCQEAYGVSVI-VG 293 (374)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHHBCTTTCEEEE-CS
T ss_pred HHHhC-CCCcEEEECCCCHHHHHHHHHHhhcCCcEEEE-ec
Confidence 011 37999998888777888899999999 99886 44
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0062 Score=55.39 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=65.6
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||-.|+ |. |..+..+++..| .+|++++.+++.++.+++. +. . .++..+..+.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----ga------~--~~~~~~~~~~~~~~~ 210 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAKEY----GA------E--YLINASKEDILRQVL 210 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT----TC------S--EEEETTTSCHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CC------c--EEEeCCCchHHHHHH
Confidence 4788999999994 43 788888888865 5899999999988877542 21 1 1222111110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++..... ...+...+.|++||+++.
T Consensus 211 ~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~ 245 (334)
T 3qwb_A 211 KFTNGKGVDASFDSVGK-DTFEISLAALKRKGVFVS 245 (334)
T ss_dssp HHTTTSCEEEEEECCGG-GGHHHHHHHEEEEEEEEE
T ss_pred HHhCCCCceEEEECCCh-HHHHHHHHHhccCCEEEE
Confidence 0112469999988775 677888999999999987
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0067 Score=50.68 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=63.2
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||..|+ |.|.....+++..| .+|+++|.+++..+.+++ .+. . . .. |..+.
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~----~g~------~-~-~~--d~~~~~~~~~ 98 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LGV------E-Y-VG--DSRSVDFADE 98 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TCC------S-E-EE--ETTCSTHHHH
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------C-E-Ee--eCCcHHHHHH
Confidence 4788999999995 33677777776655 589999999887766643 121 1 1 11 22111
Q ss_pred ---CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 221 ---WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
......+|+++.+.. ....+...+.|++||+++. ++.
T Consensus 99 ~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~~v~-~g~ 138 (198)
T 1pqw_A 99 ILELTDGYGVDVVLNSLA-GEAIQRGVQILAPGGRFIE-LGK 138 (198)
T ss_dssp HHHHTTTCCEEEEEECCC-THHHHHHHHTEEEEEEEEE-CSC
T ss_pred HHHHhCCCCCeEEEECCc-hHHHHHHHHHhccCCEEEE-EcC
Confidence 011236999998775 4667888999999999987 443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0074 Score=55.09 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||-.|+|+ |..+..+++..| .+|++++.+++.++.+++. +. . .++.....+
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~l----ga------~--~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLRL----GA------A--YVIDTSTAPLYETVM 206 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH----TC------S--EEEETTTSCHHHHHH
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhC----CC------c--EEEeCCcccHHHHHH
Confidence 478999999999984 788888888776 5899999999988888652 21 1 122111111
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......+|+++.........+ ..+.|++||+++. ++
T Consensus 207 ~~~~~~g~Dvvid~~g~~~~~~-~~~~l~~~G~iv~-~G 243 (340)
T 3gms_A 207 ELTNGIGADAAIDSIGGPDGNE-LAFSLRPNGHFLT-IG 243 (340)
T ss_dssp HHTTTSCEEEEEESSCHHHHHH-HHHTEEEEEEEEE-CC
T ss_pred HHhCCCCCcEEEECCCChhHHH-HHHHhcCCCEEEE-Ee
Confidence 0112247999998877665544 4589999999987 44
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0078 Score=56.86 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 149 LKPGMHALDIGSGTGYLTACFA-LMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La-~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
++++..|+|+|++.|..+..++ +..++.++|+++|.++...+..++|+..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4788999999999999999988 5544447999999999999999999986
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=60.74 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=67.0
Q ss_pred cCC-CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCC
Q 022372 148 NLK-PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEF 224 (298)
Q Consensus 148 ~l~-~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~ 224 (298)
.++ +|++||-+|+|. |..+..+++..| .+|++++.+++..+.+++.+ +. ..+ +..+..+.. ...
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~~l---Ga------~~v--i~~~~~~~~~~~~ 242 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQDL---GA------DDY--VIGSDQAKMSELA 242 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHTTS---CC------SCE--EETTCHHHHHHST
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHc---CC------cee--eccccHHHHHHhc
Confidence 367 899999999876 888888888876 58999999998877765322 21 221 111100000 001
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+|+|+.........+...+.|++||+++. ++
T Consensus 243 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G 275 (357)
T 2cf5_A 243 DSLDYVIDTVPVHHALEPYLSLLKLDGKLIL-MG 275 (357)
T ss_dssp TTEEEEEECCCSCCCSHHHHTTEEEEEEEEE-CS
T ss_pred CCCCEEEECCCChHHHHHHHHHhccCCEEEE-eC
Confidence 3699999888776667788899999999987 44
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0034 Score=58.09 Aligned_cols=97 Identities=25% Similarity=0.349 Sum_probs=66.2
Q ss_pred CC-CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCC
Q 022372 149 LK-PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFA 225 (298)
Q Consensus 149 l~-~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~ 225 (298)
+. +|++||-+|+|. |..+..+++..| .+|++++.+++..+.+++.+ +. . .++..+..+.. ...+
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~l---Ga------~--~v~~~~~~~~~~~~~~ 250 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALKNF---GA------D--SFLVSRDQEQMQAAAG 250 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHHTS---CC------S--EEEETTCHHHHHHTTT
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhc---CC------c--eEEeccCHHHHHHhhC
Confidence 66 899999999876 778888888765 58999999998877765332 21 1 11111100000 0013
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+|+|+.........+...+.|+++|+++. ++.
T Consensus 251 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~g~ 283 (366)
T 1yqd_A 251 TLDGIIDTVSAVHPLLPLFGLLKSHGKLIL-VGA 283 (366)
T ss_dssp CEEEEEECCSSCCCSHHHHHHEEEEEEEEE-CCC
T ss_pred CCCEEEECCCcHHHHHHHHHHHhcCCEEEE-Ecc
Confidence 699999888776566788899999999886 443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0087 Score=54.15 Aligned_cols=92 Identities=20% Similarity=0.043 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEc-CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-CCCCC
Q 022372 148 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-~~~~~ 224 (298)
.+++|++||-.| +|. |..+..+++..| .+|++++ +++..+.+++ .+. + .++..+..+ .....
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~~----lGa------~--~~i~~~~~~~~~~~~ 213 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLKA----LGA------E--QCINYHEEDFLLAIS 213 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHHH----HTC------S--EEEETTTSCHHHHCC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHHH----cCC------C--EEEeCCCcchhhhhc
Confidence 488999999997 666 889999999876 4889887 4544555543 232 1 122211111 00111
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+|+-...-+.. +...+.|++||+++.
T Consensus 214 ~g~D~v~d~~g~~~~-~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 214 TPVDAVIDLVGGDVG-IQSIDCLKETGCIVS 243 (321)
T ss_dssp SCEEEEEESSCHHHH-HHHGGGEEEEEEEEE
T ss_pred cCCCEEEECCCcHHH-HHHHHhccCCCEEEE
Confidence 469999988776655 888999999999987
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.007 Score=55.70 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCC------CEEEEEcCCC-cHHH-HHHH-HHcCCCcEEEEEeCCHH---HHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 149 LKPG------MHALDIGSGT-GYLT-ACFA-LMVGPQGRAVGVEHIPE---LVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 149 l~~g------~~VLDiG~Gs-G~~t-~~La-~~~g~~~~V~giD~s~~---~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+++| ++||-+|+|. |..+ ..++ +..|. .+|+++|.+++ ..+.+++ .+. +.+ |
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga-~~Vi~~~~~~~~~~~~~~~~~----lGa---------~~v--~ 227 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGY-ENLYCLGRRDRPDPTIDIIEE----LDA---------TYV--D 227 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCC-CEEEEEECCCSSCHHHHHHHH----TTC---------EEE--E
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCC-cEEEEEeCCcccHHHHHHHHH----cCC---------ccc--C
Confidence 7788 9999999865 7777 8888 76553 24999999988 7887753 221 111 2
Q ss_pred CCC-CCCC----CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 217 GRK-GWPE----FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 217 ~~~-~~~~----~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+ .+.+ .+.+|+|+-........+...+.|+++|+++.
T Consensus 228 ~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~ 271 (357)
T 2b5w_A 228 SRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGAL 271 (357)
T ss_dssp TTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEE
T ss_pred CCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 111 1000 13699999888877678889999999999987
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0075 Score=55.23 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=66.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+ +|++||.+|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++..+..+ .
T Consensus 165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~~----Ga------~--~~~~~~~~~~~~~v~~ 230 (348)
T 2d8a_A 165 PI-SGKSVLITGAGPLGLLGIAVAKASGA-YPVIVSEPSDFRRELAKKV----GA------D--YVINPFEEDVVKEVMD 230 (348)
T ss_dssp CC-TTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHHHHHHH----TC------S--EEECTTTSCHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----CC------C--EEECCCCcCHHHHHHH
Confidence 36 899999999975 7888888887652 2899999999988887642 21 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+|+.........+...+.|+++|+++.
T Consensus 231 ~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 231 ITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp HTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEE
T ss_pred HcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 01123699999988877778889999999999887
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=53.85 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=66.6
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----- 219 (298)
.++++++||..|+|+ |..+..+++.. | .+|+++|.+++..+.+++. +. . ..+-..+...
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G--a~Vi~~~~~~~~~~~~~~~----g~------~-~~~~~~~~~~~~~~~ 233 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRA----GA------D-YVINASMQDPLAEIR 233 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHH----TC------S-EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHh----CC------C-EEecCCCccHHHHHH
Confidence 488999999999984 66777777776 5 5899999999988877542 21 1 1111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+.+|+++.+.......+...+.|+++|+++.
T Consensus 234 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 234 RITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp HHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEE
T ss_pred HHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 001114799999998877678888999999999987
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00053 Score=61.74 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=71.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC----CCCCCCc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----WPEFAPY 227 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----~~~~~~f 227 (298)
+..+||+=+|||.++..+.+. + .+++.+|.+++.++..++|++. ..+++++..|+... .++..+|
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~--d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~f 160 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-Q--DRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKR 160 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-T--SEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSC
T ss_pred CCCceeEeCCcHHHHHHHcCC-C--CeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCc
Confidence 456899999999999888773 2 6999999999999999988754 16799999997642 1333579
Q ss_pred cEEEECCCCch--hHHH----HHh--ccccCcEEEEE
Q 022372 228 DAIHVGAAAPE--IPQA----LID--QLKPGGRMVIP 256 (298)
Q Consensus 228 D~Ii~~~~~~~--l~~~----l~~--~LkpGG~Lvi~ 256 (298)
|+|+.+++.+. ..+. +.+ .+.|+|++++-
T Consensus 161 dLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 161 GLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp EEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEE
Confidence 99999999872 3333 322 45689999883
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=52.93 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=66.5
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++++||..|+ |.|..+..+++..| .+|++++.+++.++.+++. +. .. ++.....+
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~----ga------~~--~~d~~~~~~~~~~~ 228 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKAL----GA------DE--TVNYTHPDWPKEVR 228 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH----TC------SE--EEETTSTTHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhc----CC------CE--EEcCCcccHHHHHH
Confidence 4778999999998 45888888888765 5899999999988887541 21 11 12111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+++.... ....+.+.+.|+++|+++.
T Consensus 229 ~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 229 RLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAI 263 (343)
T ss_dssp HHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEE
T ss_pred HHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEE
Confidence 0011247999999888 6778889999999999887
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0046 Score=57.23 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=65.8
Q ss_pred CCCEEEEEc-CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC--C---CCCCC
Q 022372 151 PGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--R---KGWPE 223 (298)
Q Consensus 151 ~g~~VLDiG-~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~--~---~~~~~ 223 (298)
+|++||-.| +|. |..+..+++..+. .+|++++.+++..+.+++ .+. + .++.... . ... .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g-~~Vi~~~~~~~~~~~~~~----lGa------d--~vi~~~~~~~~~v~~~-~ 236 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTD-LTVIATASRPETQEWVKS----LGA------H--HVIDHSKPLAAEVAAL-G 236 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHH----TTC------S--EEECTTSCHHHHHHTT-C
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHH----cCC------C--EEEeCCCCHHHHHHHh-c
Confidence 788999999 665 8899999987422 699999999998888754 222 1 1111110 0 011 2
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+.+|+|+.........+.+.+.|+++|+++..
T Consensus 237 ~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 237 LGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp SCCEEEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCceEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence 257999998877777788999999999999973
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=54.35 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=63.9
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC----
Q 022372 152 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP---ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---- 223 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~---~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---- 223 (298)
|++||-+|+|. |..+..+++..| .+|++++.++ +..+.+++. +. +.+ | .+.+.+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~~----ga---------~~v--~-~~~~~~~~~~ 242 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEET----KT---------NYY--N-SSNGYDKLKD 242 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHHH----TC---------EEE--E-CTTCSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHHh----CC---------cee--c-hHHHHHHHHH
Confidence 99999999965 777788888765 4899999998 777766532 21 111 2 111111
Q ss_pred -CCCccEEEECCCCchhH-HHHHhccccCcEEEEEECC
Q 022372 224 -FAPYDAIHVGAAAPEIP-QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 -~~~fD~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+|+|+......... +...+.|+++|+++. ++.
T Consensus 243 ~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~-~g~ 279 (366)
T 2cdc_A 243 SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGL-FGF 279 (366)
T ss_dssp HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEE-CSC
T ss_pred hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEE-Eec
Confidence 14699999998887777 899999999999887 443
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.017 Score=55.00 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||-+|+ |. |..+..+++..| .++++++.+++.++.+++. +. . .++.....+.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~~~l----Ga------~--~vi~~~~~d~~~~~~ 290 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEICRAM----GA------E--AIIDRNAEGYRFWKD 290 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH----TC------C--EEEETTTTTCCSEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHhh----CC------c--EEEecCcCccccccc
Confidence 4789999999998 54 888899998875 5899999999988888542 21 1 1121111000
Q ss_pred ------------------CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 ------------------WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ------------------~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+|+-.... ...+...+.|++||++++
T Consensus 291 ~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~ 342 (456)
T 3krt_A 291 ENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITT 342 (456)
T ss_dssp TTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEE
T ss_pred ccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEE
Confidence 0112479999887766 677888899999999987
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.015 Score=53.20 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=64.8
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||-.|+ |. |..+..+++..| .+|++++.+++..+.+++. +. . .++..+ .+
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----ga------~--~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKSV----GA------D--IVLPLE-EGWAKAVR 220 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHH----TC------S--EEEESS-TTHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----CC------c--EEecCc-hhHHHHHH
Confidence 4788999999997 43 888888998875 5899999999888877652 21 1 122222 11
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+.....+ ..+...+.|++||+++.
T Consensus 221 ~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~ 255 (342)
T 4eye_A 221 EATGGAGVDMVVDPIGGP-AFDDAVRTLASEGRLLV 255 (342)
T ss_dssp HHTTTSCEEEEEESCC---CHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCceEEEECCchh-HHHHHHHhhcCCCEEEE
Confidence 011223699999887764 56788899999999987
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.028 Score=51.00 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||..|+ | .|..+..+++..| .+|++++.+++..+.+.+.+ +. . .++.....+
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~~---g~------~--~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVEEL---GF------D--GAIDYKNEDLAAGLK 212 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTT---CC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHc---CC------C--EEEECCCHHHHHHHH
Confidence 4889999999998 3 3788888888765 59999999998887773322 11 1 112111111
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
... .+.+|+++.+... ...+...+.|++||+++.
T Consensus 213 ~~~-~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 213 REC-PKGIDVFFDNVGG-EILDTVLTRIAFKARIVL 246 (336)
T ss_dssp HHC-TTCEEEEEESSCH-HHHHHHHTTEEEEEEEEE
T ss_pred Hhc-CCCceEEEECCCc-chHHHHHHHHhhCCEEEE
Confidence 001 2469999987774 567888999999999987
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0077 Score=54.79 Aligned_cols=104 Identities=23% Similarity=0.211 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCcHHHHHHH---HHcCCCc--EEEEEeCCH--------H-HHHHHHHHHHHhccCCccCCCC--EEEEE
Q 022372 151 PGMHALDIGSGTGYLTACFA---LMVGPQG--RAVGVEHIP--------E-LVVSSIQNIEKSAAAPLLKEGS--LSVHV 214 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La---~~~g~~~--~V~giD~s~--------~-~l~~A~~~~~~~~~~~~l~~~~--v~~~~ 214 (298)
+.-+|||+|-|+|+...... ...++.. +++++|..+ + .-+..+....... ....++ +++..
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p---~~~~~~v~L~l~~ 172 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVP---EYEGERLSLKVLL 172 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCS---EEECSSEEEEEEE
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCc---cccCCcEEEEEEe
Confidence 34589999999999764332 2224544 457777532 1 1122222222211 122233 46778
Q ss_pred cCCCCCCCC--CCCccEEEECCCC---------chhHHHHHhccccCcEEEEEE
Q 022372 215 GDGRKGWPE--FAPYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 215 gD~~~~~~~--~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
||+.+.++. ...||+|+.++-. +++++.+.+.++|||+++--.
T Consensus 173 GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt 226 (308)
T 3vyw_A 173 GDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS 226 (308)
T ss_dssp SCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC
T ss_pred chHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe
Confidence 998764332 2479999999743 356789999999999998633
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.017 Score=52.88 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=64.8
Q ss_pred CCCEEEEE-cCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------C
Q 022372 151 PGMHALDI-GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------P 222 (298)
Q Consensus 151 ~g~~VLDi-G~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------~ 222 (298)
+|++||-. |+|. |..+..+++..| .+|++++.+++.++.+++. +. + .++..+ +.+ .
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----Ga------~--~vi~~~--~~~~~~~~~~ 213 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKM----GA------D--IVLNHK--ESLLNQFKTQ 213 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHHH----TC------S--EEECTT--SCHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----CC------c--EEEECC--ccHHHHHHHh
Confidence 89999999 5665 888899998865 5899999999988888752 21 1 111111 110 0
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+|+.........+.+.+.|+++|+++.
T Consensus 214 ~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 214 GIELVDYVFCTFNTDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp TCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccEEEECCCchHHHHHHHHHhccCCEEEE
Confidence 124699999887776777889999999999976
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.024 Score=51.23 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||..|+ | .|.....+++..| .+|++++.+++..+.+++. +. .. ++..+..+.
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~----g~-------~~-~~~~~~~~~~~~~~ 202 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA----GA-------WQ-VINYREEDLVERLK 202 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH----TC-------SE-EEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----CC-------CE-EEECCCccHHHHHH
Confidence 4788999999994 3 3777777777665 5899999999888877642 21 11 111111110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++.+.. ....+...+.|++||+++.
T Consensus 203 ~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~ 237 (327)
T 1qor_A 203 EITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVS 237 (327)
T ss_dssp HHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEE
Confidence 011236999999888 6778899999999999886
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.012 Score=53.66 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--- 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--- 222 (298)
.+++|++||..|+ | .|..+..+++..| .+|++++.+++.++.+++.+ +. . .++.......+.
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~~---g~------~--~~~d~~~~~~~~~~~ 218 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKTKF---GF------D--DAFNYKEESDLTAAL 218 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTS---CC------S--EEEETTSCSCSHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHc---CC------c--eEEecCCHHHHHHHH
Confidence 4788999999997 3 3788888888765 58999999998887775322 11 1 111111000110
Q ss_pred ---CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 ---EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ---~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+.+|+++.+... ...+...+.|++||++++
T Consensus 219 ~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 219 KRCFPNGIDIYFENVGG-KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp HHHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEE
T ss_pred HHHhCCCCcEEEECCCH-HHHHHHHHHHhcCCEEEE
Confidence 01469999988776 577888999999999987
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.049 Score=50.15 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=65.2
Q ss_pred cCCCCCEEEEEc-CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---C-
Q 022372 148 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---W- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~- 221 (298)
.+++|++||-.| +|. |..+..+++..| .+|++++.+++..+.+++ .+. . .++..+..+. .
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~----~Ga------~--~~~~~~~~~~~~~~~ 225 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLKS----LGC------D--RPINYKTEPVGTVLK 225 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH----cCC------c--EEEecCChhHHHHHH
Confidence 478999999999 444 888899998865 589999999988887764 221 1 1121111110 0
Q ss_pred -CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 -PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+|+..... ...+.+.+.|+++|+++.
T Consensus 226 ~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 226 QEYPEGVDVVYESVGG-AMFDLAVDALATKGRLIV 259 (362)
T ss_dssp HHCTTCEEEEEECSCT-HHHHHHHHHEEEEEEEEE
T ss_pred HhcCCCCCEEEECCCH-HHHHHHHHHHhcCCEEEE
Confidence 011469999988775 567888999999999887
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.02 Score=52.31 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=66.6
Q ss_pred cCCCCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CC--
Q 022372 148 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GW-- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~-- 221 (298)
.+++|++||..|++ .|..+..+++..| .+|+++|.+++..+.+++ .+. . .++ |..+ .+
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~~----~g~------~--~~~--d~~~~~~~~~ 229 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFRS----IGG------E--VFI--DFTKEKDIVG 229 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHHH----TTC------C--EEE--ETTTCSCHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHHH----cCC------c--eEE--ecCccHhHHH
Confidence 47899999999983 4777778887655 589999999888776653 121 1 111 2221 10
Q ss_pred -----CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 222 -----PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 -----~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.. +.+|+++.+.......+.+.+.|+++|+++. ++.
T Consensus 230 ~~~~~~~-~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~-~g~ 270 (347)
T 2hcy_A 230 AVLKATD-GGAHGVINVSVSEAAIEASTRYVRANGTTVL-VGM 270 (347)
T ss_dssp HHHHHHT-SCEEEEEECSSCHHHHHHHTTSEEEEEEEEE-CCC
T ss_pred HHHHHhC-CCCCEEEECCCcHHHHHHHHHHHhcCCEEEE-EeC
Confidence 11 2699999998877788899999999999886 443
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.034 Score=49.23 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHH---c---CCCcEEEEEe-----CCHH-------------------HHHHHHHHHHHhcc
Q 022372 152 GMHALDIGSGTGYLTACFALM---V---GPQGRAVGVE-----HIPE-------------------LVVSSIQNIEKSAA 201 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~---~---g~~~~V~giD-----~s~~-------------------~l~~A~~~~~~~~~ 201 (298)
...|+|+|+-.|..+..++.. + ++..+|++.| ..+. ..+..++.+.....
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 458999999999988887653 1 3457999999 2210 01111111110000
Q ss_pred CCccC--CCCEEEEEcCCCCCCC------CCCCccEEEECCCCc----hhHHHHHhccccCcEEEE
Q 022372 202 APLLK--EGSLSVHVGDGRKGWP------EFAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 202 ~~~l~--~~~v~~~~gD~~~~~~------~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi 255 (298)
...++ .++++++.|+..+..+ +..+||.++.++..- ...+.+...|+|||++++
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEE
Confidence 01122 2789999999876432 235799999999862 235778899999999997
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0057 Score=54.84 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc----CCCCCCC
Q 022372 149 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRKGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g----D~~~~~~ 222 (298)
+++|++||..|+ |. |..+..+++..| .+|++++.+++..+.+++ .+. .. ++.. +..+..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga------~~--~~~~~~~~~~~~~~- 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGA------EE--AATYAEVPERAKAW- 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTC------SE--EEEGGGHHHHHHHT-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh----cCC------CE--EEECCcchhHHHHh-
Confidence 788999999998 43 788888888765 589999999988887753 121 11 1211 111111
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+|+. ... ...+...+.|+++|+++.
T Consensus 188 --~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 188 --GGLDLVLE-VRG-KEVEESLGLLAHGGRLVY 216 (302)
T ss_dssp --TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEE
T ss_pred --cCceEEEE-CCH-HHHHHHHHhhccCCEEEE
Confidence 46999998 665 577888999999999886
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.013 Score=52.96 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCCC-EEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCC
Q 022372 149 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPE 223 (298)
Q Consensus 149 l~~g~-~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--~~~~~ 223 (298)
++++. +||-.|+ |. |..+..+++..| .+|++++.+++..+.+++. +. +.+ +-..+.. ... .
T Consensus 143 ~~~~~g~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~l----Ga------~~v-i~~~~~~~~~~~-~ 208 (324)
T 3nx4_A 143 IRPQDGEVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKSL----GA------NRI-LSRDEFAESRPL-E 208 (324)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHH----TC------SEE-EEGGGSSCCCSS-C
T ss_pred cCCCCCeEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----CC------CEE-EecCCHHHHHhh-c
Confidence 44432 4999997 44 889999999876 4899999999988888652 22 111 1111111 111 1
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+|+++-...-+ ..+...+.|+++|+++. ++.
T Consensus 209 ~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~-~G~ 242 (324)
T 3nx4_A 209 KQLWAGAIDTVGDK-VLAKVLAQMNYGGCVAA-CGL 242 (324)
T ss_dssp CCCEEEEEESSCHH-HHHHHHHTEEEEEEEEE-CCC
T ss_pred CCCccEEEECCCcH-HHHHHHHHHhcCCEEEE-Eec
Confidence 24799988776544 77888999999999987 443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0042 Score=56.83 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CC-
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP- 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~- 222 (298)
.+ +|++||.+|+|. |..+..+++..|. .+|++++.+++.++.+++. . .. ++..+..+. ..
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~l--a---------~~--v~~~~~~~~~~~~~~ 226 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRASGA-GPILVSDPNPYRLAFARPY--A---------DR--LVNPLEEDLLEVVRR 226 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHGGGTTT--C---------SE--EECTTTSCHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh--H---------Hh--ccCcCccCHHHHHHH
Confidence 36 899999999965 7888888888652 2799999998877766432 1 11 111110000 00
Q ss_pred -CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 223 -EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 -~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....+|+|+.........+...+.|+++|+++. ++.
T Consensus 227 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~-~g~ 263 (343)
T 2dq4_A 227 VTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARI-LGI 263 (343)
T ss_dssp HHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEE-CCC
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE-Eec
Confidence 024699999888876778889999999999886 443
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.035 Score=50.88 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||..|+ | .|..+..+++..| .+|++++.+++.++.+++. +. . . ++..+..+
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----g~------~-~-~~~~~~~~~~~~~~ 224 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLVTAGSQKKLQMAEKL----GA------A-A-GFNYKKEDFSEATL 224 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH----TC------S-E-EEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----CC------c-E-EEecCChHHHHHHH
Confidence 4788999999994 3 3777778887755 5899999999888877432 21 1 1 11111111
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+++.+.... ..+...+.|++||+++.
T Consensus 225 ~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~ 259 (354)
T 2j8z_A 225 KFTKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVL 259 (354)
T ss_dssp HHTTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEE
T ss_pred HHhcCCCceEEEECCCch-HHHHHHHhccCCCEEEE
Confidence 001124699999888765 56777899999999987
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.012 Score=53.40 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=64.0
Q ss_pred cCCCCC-EEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 148 NLKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 148 ~l~~g~-~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
.+++++ +||-.|+ |. |..+..+++..| .+|++++.+++..+.+++ .+....+...... .+..... ..
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~---~~~~~~~-~~ 214 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAKEVLAREDVM---AERIRPL-DK 214 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCSEEEECC------------C-CS
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCcEEEecCCcH---HHHHHHh-cC
Confidence 367775 8999997 44 888889998876 579999999888887754 2221001111100 0000111 12
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+|+|+..... ...+...+.|++||+++. ++
T Consensus 215 ~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~-~G 246 (328)
T 1xa0_A 215 QRWAAAVDPVGG-RTLATVLSRMRYGGAVAV-SG 246 (328)
T ss_dssp CCEEEEEECSTT-TTHHHHHHTEEEEEEEEE-CS
T ss_pred CcccEEEECCcH-HHHHHHHHhhccCCEEEE-Ee
Confidence 469999988776 467788899999999987 44
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.027 Score=51.71 Aligned_cols=94 Identities=16% Similarity=0.010 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEc-CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||-.| +|. |..+..+++..| .+|++++.+++..+.+++. +. . .++..+..+.
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~l----Ga------~--~~~~~~~~~~~~~~~ 229 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACERL----GA------K--RGINYRSEDFAAVIK 229 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH----TC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----CC------C--EEEeCCchHHHHHHH
Confidence 478999999995 443 888888888765 5899999999988887652 21 1 1221111110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ...+|+++...... ..+...+.|+++|+++. ++
T Consensus 230 ~~~-~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~-~g 265 (353)
T 4dup_A 230 AET-GQGVDIILDMIGAA-YFERNIASLAKDGCLSI-IA 265 (353)
T ss_dssp HHH-SSCEEEEEESCCGG-GHHHHHHTEEEEEEEEE-CC
T ss_pred HHh-CCCceEEEECCCHH-HHHHHHHHhccCCEEEE-EE
Confidence 01 24699999887764 66778899999999887 44
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.048 Score=49.38 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=65.5
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.++++++||..|+ |.|..+..+++..| .+|++++.+++..+.+++. +. . . ++..+..+.
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~~----g~------~-~-~~d~~~~~~~~~i~ 207 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARKL----GC------H-H-TINYSTQDFAEVVR 207 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHH----TC------S-E-EEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CC------C-E-EEECCCHHHHHHHH
Confidence 4788999999995 44888888888765 5899999999888877542 21 1 1 111111100
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+|+++.+... ...+...+.|++||+++. ++
T Consensus 208 ~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~-~g 244 (333)
T 1wly_A 208 EITGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAA-YG 244 (333)
T ss_dssp HHHTTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEE-CC
T ss_pred HHhCCCCCeEEEECCcH-HHHHHHHHhhccCCEEEE-Ee
Confidence 0112369999988776 667888999999999876 44
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0036 Score=71.45 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEF 224 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~----~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-~~~~ 224 (298)
.+..+|||||.|+|..+..+.+.++. ..+++..|+++...+.|+++++.. .+....-|..+. ....
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------di~~~~~d~~~~~~~~~ 1309 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------HVTQGQWDPANPAPGSL 1309 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------TEEEECCCSSCCCC---
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------ccccccccccccccCCC
Confidence 46789999999999887776666542 247888999999988888877552 122211122111 0122
Q ss_pred CCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 225 APYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 225 ~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
..||+|+...+++ ....+++++|||||.+++.
T Consensus 1310 ~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp --CCEEEEECC--------------------CCEEEEE
T ss_pred CceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 5799999888764 3447888999999999874
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.038 Score=49.93 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=65.0
Q ss_pred cCCCCC-EEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC----CCCC
Q 022372 148 NLKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRKG 220 (298)
Q Consensus 148 ~l~~g~-~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD----~~~~ 220 (298)
.+++|+ +||-.|+ |. |..+..+++..| .+|++++.+++..+.+++. +. ..+ +-..+ ....
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~l----Ga------~~v-~~~~~~~~~~~~~ 212 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQL----GA------SEV-ISREDVYDGTLKA 212 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHH----TC------SEE-EEHHHHCSSCCCS
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CC------cEE-EECCCchHHHHHH
Confidence 367775 8999997 44 888888888876 4799999998888877542 21 111 11111 1111
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. ....+|+++..... ...+...+.|++||+++. ++
T Consensus 213 ~-~~~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~-~G 247 (330)
T 1tt7_A 213 L-SKQQWQGAVDPVGG-KQLASLLSKIQYGGSVAV-SG 247 (330)
T ss_dssp S-CCCCEEEEEESCCT-HHHHHHHTTEEEEEEEEE-CC
T ss_pred h-hcCCccEEEECCcH-HHHHHHHHhhcCCCEEEE-Ee
Confidence 1 12469999988776 467888999999999987 44
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.05 Score=49.64 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||-+|+ |. |..+..+++..| .+|+++ .+++.++.+++. +. .. +. +..+.
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~~~l----Ga------~~---i~-~~~~~~~~~~ 209 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYVRDL----GA------TP---ID-ASREPEDYAA 209 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHHHHH----TS------EE---EE-TTSCHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHHHHc----CC------CE---ec-cCCCHHHHHH
Confidence 4788999999994 44 888899998865 589999 888887777542 21 11 22 11110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+|+....- ...+...+.|+++|+++.
T Consensus 210 ~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 210 EHTAGQGFDLVYDTLGG-PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp HHHTTSCEEEEEESSCT-HHHHHHHHHEEEEEEEEE
T ss_pred HHhcCCCceEEEECCCc-HHHHHHHHHHhcCCeEEE
Confidence 0122469999987774 567788899999999987
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.056 Score=48.87 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||..|+ |.|..+..+++..| .+|+++|.+++.++.+++ + +. ...+-..+..+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~-~---g~-------~~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQ-I---GF-------DAAFNYKTVNSLEEALK 208 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-T---TC-------SEEEETTSCSCHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-c---CC-------cEEEecCCHHHHHHHHH
Confidence 4788999999998 33777777777655 589999999988877732 2 21 11111111010
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... +.+|+++.+.... ..+...+.|++||++++
T Consensus 209 ~~~~-~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 209 KASP-DGYDCYFDNVGGE-FLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp HHCT-TCEEEEEESSCHH-HHHHHHTTEEEEEEEEE
T ss_pred HHhC-CCCeEEEECCChH-HHHHHHHHHhcCCEEEE
Confidence 0011 4699999888753 46778899999999987
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.043 Score=50.31 Aligned_cols=95 Identities=23% Similarity=0.194 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||..|+ | .|..+..+++..| .+|++++.+++..+.+++ .+. . .++..+..+.
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga------~--~~~d~~~~~~~~~~~ 232 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ----NGA------H--EVFNHREVNYIDKIK 232 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTSTTHHHHHH
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHHHHHH----cCC------C--EEEeCCCchHHHHHH
Confidence 4788999999997 3 3777788887765 589999999988876643 121 1 1121111110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+|+++.+.... ......+.|+++|+++. ++
T Consensus 233 ~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~-~g 269 (351)
T 1yb5_A 233 KYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIV-VG 269 (351)
T ss_dssp HHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEE-CC
T ss_pred HHcCCCCcEEEEECCChH-HHHHHHHhccCCCEEEE-Ee
Confidence 01123699999887654 45677899999999987 44
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0064 Score=56.33 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=61.0
Q ss_pred CCCCCEEEEEc-CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 149 LKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
+++|++||-.| +|. |..+..+++..| .+|++++ +++..+.+++ .+. . .++..+..+ ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa------~--~v~~~~~~~~~~~~~~ 245 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVRK----LGA------D--DVIDYKSGSVEEQLKS 245 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTC------S--EEEETTSSCHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHHH----cCC------C--EEEECCchHHHHHHhh
Confidence 67899999999 454 888889998865 5899998 6666666532 221 1 112111111 0011
Q ss_pred CCCccEEEECCCCc-hhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+|+...... ...+...+.|++||+++.
T Consensus 246 ~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 246 LKPFDFILDNVGGSTETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEE
T ss_pred cCCCCEEEECCCChhhhhHHHHHhhcCCcEEEE
Confidence 14699999887765 344677889999999987
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.054 Score=51.26 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEcCCCCC----
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKG---- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v-~~~~gD~~~~---- 220 (298)
.+++|++||-.|+ |. |..+..+++..| .+|++++.+++..+.+++ .+. ..+ .....+..+.
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~~~~~~----lGa------~~~i~~~~~~~~~~~~~~ 284 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKEAAVRA----LGC------DLVINRAELGITDDIADD 284 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------CCEEEHHHHTCCTTGGGC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------CEEEeccccccccccccc
Confidence 4789999999997 44 788888888865 589999999988888753 221 221 1111111000
Q ss_pred -----------------CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 -----------------WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 -----------------~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ...+|+++..... ...+...+.|++||+++. ++
T Consensus 285 ~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~-~G 336 (447)
T 4a0s_A 285 PRRVVETGRKLAKLVVEKA-GREPDIVFEHTGR-VTFGLSVIVARRGGTVVT-CG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SSCCSEEEECSCH-HHHHHHHHHSCTTCEEEE-SC
T ss_pred ccccchhhhHHHHHHHHHh-CCCceEEEECCCc-hHHHHHHHHHhcCCEEEE-Ee
Confidence 00 2469999987776 456788899999999987 44
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.062 Score=50.14 Aligned_cols=71 Identities=21% Similarity=0.097 Sum_probs=55.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--------CC
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--------EF 224 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--------~~ 224 (298)
.+|+|+-||.|.++.-+.+. |- ..+.++|+++.+++..+.|+ ++..++.+|+.+... ..
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~-~~v~avE~d~~a~~t~~~N~-----------~~~~~~~~DI~~~~~~~~~~~~~~~ 69 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GF-DVKMAVEIDQHAINTHAINF-----------PRSLHVQEDVSLLNAEIIKGFFKND 69 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TC-EEEEEECSCHHHHHHHHHHC-----------TTSEEECCCGGGCCHHHHHHHHCSC
T ss_pred CeEEEEccCcCHHHHHHHHC-CC-cEEEEEeCCHHHHHHHHHhC-----------CCCceEecChhhcCHHHHHhhcccC
Confidence 58999999999999999887 32 46789999999988887774 345677788775421 22
Q ss_pred CCccEEEECCCC
Q 022372 225 APYDAIHVGAAA 236 (298)
Q Consensus 225 ~~fD~Ii~~~~~ 236 (298)
..+|+|+.+.++
T Consensus 70 ~~~D~i~ggpPC 81 (376)
T 3g7u_A 70 MPIDGIIGGPPC 81 (376)
T ss_dssp CCCCEEEECCCC
T ss_pred CCeeEEEecCCC
Confidence 579999999885
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.17 Score=46.13 Aligned_cols=94 Identities=15% Similarity=0.220 Sum_probs=63.3
Q ss_pred cCCCC--CEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----
Q 022372 148 NLKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---- 219 (298)
Q Consensus 148 ~l~~g--~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---- 219 (298)
.+++| ++||-.|+ | .|..+..+++..|. .+|++++.+++..+.+++.+ +. . .++..+..+
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga-~~Vi~~~~~~~~~~~~~~~~---g~------~--~~~d~~~~~~~~~ 222 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGC-SRVVGICGTHEKCILLTSEL---GF------D--AAINYKKDNVAEQ 222 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTS---CC------S--EEEETTTSCHHHH
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHc---CC------c--eEEecCchHHHHH
Confidence 47889 99999998 3 37777777777542 28999999988777765422 11 1 111111100
Q ss_pred --CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 --GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 --~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... +.+|+++.+... ...+...+.|++||++++
T Consensus 223 ~~~~~~-~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 223 LRESCP-AGVDVYFDNVGG-NISDTVISQMNENSHIIL 258 (357)
T ss_dssp HHHHCT-TCEEEEEESCCH-HHHHHHHHTEEEEEEEEE
T ss_pred HHHhcC-CCCCEEEECCCH-HHHHHHHHHhccCcEEEE
Confidence 0011 269999988874 667888899999999986
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=59.26 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC------C-----CcEEEEEeCCH---HHHHHHH-----------HHHHHhccC-C-
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG------P-----QGRAVGVEHIP---ELVVSSI-----------QNIEKSAAA-P- 203 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g------~-----~~~V~giD~s~---~~l~~A~-----------~~~~~~~~~-~- 203 (298)
+.-+|+|+|.|+|+..+.+.+.+. | ..+++++|..| +-+..|- +-+..+... +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 446899999999998887766531 1 14799999854 3333321 112222110 0
Q ss_pred ----ccCC--CCEEEEEcCCCCCCCC-----CCCccEEEECCCC---------chhHHHHHhccccCcEEEE
Q 022372 204 ----LLKE--GSLSVHVGDGRKGWPE-----FAPYDAIHVGAAA---------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 204 ----~l~~--~~v~~~~gD~~~~~~~-----~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi 255 (298)
.+.. -++++..||+.+.++. ...+|+++.++.. .+++..+.+.++|||.+.-
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0111 2567888998754432 3679999998764 4567889999999998775
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.047 Score=50.13 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=63.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-----CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----KG 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-----~~ 220 (298)
.+++|++||-+|+|. |..+..+++.. | .+|+++|.+++..+.+++ .+. + .++..... ..
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~vi~~~~~~~~~v~~ 248 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAER----LGA------D--HVVDARRDPVKQVME 248 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHH----hCC------C--EEEeccchHHHHHHH
Confidence 488999999999976 77888888887 5 589999999998888763 221 1 11211100 00
Q ss_pred CCCCCCccEEEECCCCch--hHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPE--IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~--l~~~l~~~LkpGG~Lvi 255 (298)
......+|+|+-...... ..+...+. +||+++.
T Consensus 249 ~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~ 283 (359)
T 1h2b_A 249 LTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLII 283 (359)
T ss_dssp HTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEE
T ss_pred HhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEE
Confidence 112236999998887765 56666666 9999887
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.028 Score=51.69 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=54.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC---CCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF---APYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~---~~fD~ 229 (298)
.+|+|+.||.|.++.-+.+....-..|+++|+++.+++..+.|.. +..++.+|+.+..... ..+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----------~~~~~~~Di~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----------ccccccCCHHHccHhHcCcCCcCE
Confidence 589999999999999998873111479999999999999988863 3346677876643210 15899
Q ss_pred EEECCCC
Q 022372 230 IHVGAAA 236 (298)
Q Consensus 230 Ii~~~~~ 236 (298)
|+.+.+.
T Consensus 72 l~~gpPC 78 (343)
T 1g55_A 72 ILMSPPC 78 (343)
T ss_dssp EEECCC-
T ss_pred EEEcCCC
Confidence 9999884
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.097 Score=48.28 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 150 KPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 150 ~~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
++|++||-+|++ .|..+..+++..| .+|+++. +++..+.+++ .+. . .++.....+ ..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa------~--~vi~~~~~~~~~~v~~~ 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKS----RGA------E--EVFDYRAPNLAQTIRTY 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTC------S--EEEETTSTTHHHHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHH----cCC------c--EEEECCCchHHHHHHHH
Confidence 789999999994 4889999999876 4788885 7877776653 221 1 222211111 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhcc-ccCcEEEEEEC
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIPVG 258 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi~v~ 258 (298)
.. +.+|+++-........+...+.| ++||+++. ++
T Consensus 228 t~-g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~-~g 263 (371)
T 3gqv_A 228 TK-NNLRYALDCITNVESTTFCFAAIGRAGGHYVS-LN 263 (371)
T ss_dssp TT-TCCCEEEESSCSHHHHHHHHHHSCTTCEEEEE-SS
T ss_pred cc-CCccEEEECCCchHHHHHHHHHhhcCCCEEEE-Ee
Confidence 11 35999998888777788888889 69999986 44
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.016 Score=53.27 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=60.8
Q ss_pred cCCCC-CEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc------CCC
Q 022372 148 NLKPG-MHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG------DGR 218 (298)
Q Consensus 148 ~l~~g-~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g------D~~ 218 (298)
.+++| ++||-.|+ |. |..+..+|+..| .+++++..+++.++..++.+++.+. .. ++.. +..
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~lGa------~~--vi~~~~~~~~~~~ 232 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGA------TQ--VITEDQNNSREFG 232 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTC------SE--EEEHHHHHCGGGH
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHHhcCC------eE--EEecCccchHHHH
Confidence 47889 99999997 54 888899999876 4777776554431111122223232 11 1211 110
Q ss_pred CCC---C--CCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 219 KGW---P--EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~---~--~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.. . ....+|+|+-........ ...+.|+++|+++. ++
T Consensus 233 ~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~-~g 275 (364)
T 1gu7_A 233 PTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNNGLMLT-YG 275 (364)
T ss_dssp HHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEE-CC
T ss_pred HHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccCCEEEE-ec
Confidence 000 0 124699999887766555 67899999999987 44
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.043 Score=49.96 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
+.+..+++... .++|+.|||.-||+|..+....++ + .+.+|+|+++..++.+++++...
T Consensus 239 ~~l~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~-g--r~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 239 AKLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERE-S--RKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp THHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHhc
Confidence 34556666544 578999999999999988777666 4 69999999999999999887643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.13 Score=47.00 Aligned_cols=94 Identities=20% Similarity=0.191 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHH---HHHHHHHHHHHhccCCccCCCCEEEEEc------C
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPE---LVVSSIQNIEKSAAAPLLKEGSLSVHVG------D 216 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~---~l~~A~~~~~~~~~~~~l~~~~v~~~~g------D 216 (298)
.+++|++||-.|+ |. |..+..+|+..|. ..+..++.++. ..+.++ +.+. .. ++.. +
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~----~lGa------~~--vi~~~~~~~~~ 230 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK----SLGA------EH--VITEEELRRPE 230 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHH----HTTC------SE--EEEHHHHHSGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHH----hcCC------cE--EEecCcchHHH
Confidence 4789999999997 44 8889999998763 23444555432 334443 2222 21 1211 1
Q ss_pred CCCCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+.....+.+|+|+-....... ....+.|++||+++.
T Consensus 231 ~~~~~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~ 268 (357)
T 1zsy_A 231 MKNFFKDMPQPRLALNCVGGKSS-TELLRQLARGGTMVT 268 (357)
T ss_dssp GGGTTSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEEEE
T ss_pred HHHHHhCCCCceEEEECCCcHHH-HHHHHhhCCCCEEEE
Confidence 11111111249999987775544 457899999999987
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.077 Score=48.33 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHHHHHh
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP---ELVVSSIQNIEKS 199 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~---~~l~~A~~~~~~~ 199 (298)
+.+..+++... ..+|+.|||.-||+|..+....++ + .+.+|+|+++ ..++.+++++.+.
T Consensus 229 ~~l~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~-~--r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 229 AAVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHc-C--CcEEEEECCccHHHHHHHHHHHHHHc
Confidence 34555666554 578999999999999988887777 3 6899999999 9999999998654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.059 Score=53.79 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC-----------CCcEEEEEeC---CHHHHHHHHH-----------HHHHhccC-Cc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG-----------PQGRAVGVEH---IPELVVSSIQ-----------NIEKSAAA-PL 204 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g-----------~~~~V~giD~---s~~~l~~A~~-----------~~~~~~~~-~~ 204 (298)
+.-+|||+|-|+|+......+.+. ..-+++++|. +++-+..+-. -...+... +.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 335899999999998776655431 1246899998 6666653322 22222110 00
Q ss_pred -----cC--CCCEEEEEcCCCCCCCC-----CCCccEEEECCCC---------chhHHHHHhccccCcEEEE
Q 022372 205 -----LK--EGSLSVHVGDGRKGWPE-----FAPYDAIHVGAAA---------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 205 -----l~--~~~v~~~~gD~~~~~~~-----~~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi 255 (298)
+. .-.+++..+|+.+.++. ...||+|+.++-. .+++..+.+.++|||.+..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 11 12456777887653332 2579999998764 3566889999999999875
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.049 Score=50.35 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 152 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
+.+|+-+|+|. |.....+++..| .+|+.+|.+++..+.+++.... .+.....+..........+|+|
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~DvV 234 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLL 234 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc----------eeEeeeCCHHHHHHHHcCCCEE
Confidence 48999999976 666777777665 4899999999988887654422 1112211100000001258999
Q ss_pred EECCCCch------hHHHHHhccccCcEEEE
Q 022372 231 HVGAAAPE------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 231 i~~~~~~~------l~~~l~~~LkpGG~Lvi 255 (298)
+....... +.+...+.+++||+++-
T Consensus 235 I~~~~~~~~~~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 235 IGAVLVPGRRAPILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred EECCCcCCCCCCeecCHHHHhhCCCCCEEEE
Confidence 87765533 25677889999998876
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.037 Score=51.57 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
++.+|+-+|+|. |...+..++..| .+|+++|.+++.++.+++.+.. .+.....+...........|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~----------~~~~~~~~~~~l~~~l~~aDv 234 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCG----------RIHTRYSSAYELEGAVKRADL 234 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTT----------SSEEEECCHHHHHHHHHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCC----------eeEeccCCHHHHHHHHcCCCE
Confidence 468999999976 666666676655 4899999999888777654311 111111110000000024799
Q ss_pred EEECCCCch------hHHHHHhccccCcEEEE
Q 022372 230 IHVGAAAPE------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~~~------l~~~l~~~LkpGG~Lvi 255 (298)
|+.....+. +.++..+.+||||+++-
T Consensus 235 Vi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 235 VIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp EEECCCCTTSCCCCCBCHHHHTTSCTTCEEEE
T ss_pred EEECCCcCCCCCcceecHHHHhcCCCCcEEEE
Confidence 988554332 25778899999998875
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.15 Score=46.37 Aligned_cols=91 Identities=14% Similarity=0.040 Sum_probs=59.2
Q ss_pred CCC-CEEEEE-cCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 150 KPG-MHALDI-GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 150 ~~g-~~VLDi-G~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
+++ .+||-. |+|. |..+..+++..| .+|++++.+++..+.+++. +. . .++..+..+..
T Consensus 162 ~~g~~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~~----Ga------~--~~~~~~~~~~~~~v~~ 227 (349)
T 3pi7_A 162 QEGEKAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKDI----GA------A--HVLNEKAPDFEATLRE 227 (349)
T ss_dssp HHCCSEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHHH----TC------S--EEEETTSTTHHHHHHH
T ss_pred hCCCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CC------C--EEEECCcHHHHHHHHH
Confidence 445 566655 5554 778888888876 5899999999988887642 21 1 12221111100
Q ss_pred -CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 -PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+|+........ +...+.|+++|+++.
T Consensus 228 ~~~~~g~D~vid~~g~~~~-~~~~~~l~~~G~iv~ 261 (349)
T 3pi7_A 228 VMKAEQPRIFLDAVTGPLA-SAIFNAMPKRARWII 261 (349)
T ss_dssp HHHHHCCCEEEESSCHHHH-HHHHHHSCTTCEEEE
T ss_pred HhcCCCCcEEEECCCChhH-HHHHhhhcCCCEEEE
Confidence 001369999987776544 778899999999987
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.08 E-value=0.2 Score=45.68 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 230 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~I 230 (298)
+.+|+|+.||.|.++.-+.+. |- ..+.++|+++.+++..+.|.... . .+|..+.... ...+|+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~-~~v~~~e~d~~a~~t~~~N~~~~---------~----~~Di~~~~~~~~~~~D~l 75 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GA-ECVYSNEWDKYAQEVYEMNFGEK---------P----EGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TC-EEEEEECCCHHHHHHHHHHHSCC---------C----BSCGGGSCGGGSCCCSEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CC-eEEEEEeCCHHHHHHHHHHcCCC---------C----cCCHHHcCHhhCCCCCEE
Confidence 468999999999999998876 32 57899999999999888886321 1 4666543221 1358999
Q ss_pred EECCCC
Q 022372 231 HVGAAA 236 (298)
Q Consensus 231 i~~~~~ 236 (298)
+.+.++
T Consensus 76 ~~gpPC 81 (327)
T 2c7p_A 76 CAGFPC 81 (327)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 888765
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.16 Score=48.30 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcC---C-CcEEEEEeCCHHHHHHHHHHHHH
Q 022372 152 GMHALDIGSGTGYLTACFALMVG---P-QGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g---~-~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
..+|+|+|+|+|.+..-+.+.+. + ..+++.||.|+.+.+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 36999999999998877765442 1 24899999999999888888765
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.066 Score=49.61 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
++.+|+-+|+|. |...+..++..| .+|+++|.+++..+.+++... ..+.....+..........+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g----------~~~~~~~~~~~~l~~~~~~~Dv 232 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFG----------GRVITLTATEANIKKSVQHADL 232 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTT----------TSEEEEECCHHHHHHHHHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcC----------ceEEEecCCHHHHHHHHhCCCE
Confidence 358999999965 555565665554 589999999988777654321 1222211111000000124799
Q ss_pred EEECCCCch------hHHHHHhccccCcEEEE
Q 022372 230 IHVGAAAPE------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~~~------l~~~l~~~LkpGG~Lvi 255 (298)
|+....... +.++..+.+|+||+++.
T Consensus 233 Vi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 233 LIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp EEECCC-------CCSCHHHHTTSCTTCEEEE
T ss_pred EEECCCCCccccchhHHHHHHHhhcCCCEEEE
Confidence 988776543 24778899999998775
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.13 Score=49.70 Aligned_cols=90 Identities=19% Similarity=0.133 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..+|++|+-+|+|. |...+..++..| .+|+++|.++...+.|++ .+. ++. +..+. ....
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~----~Ga---------~~~--~l~e~---l~~a 330 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMM----EGF---------DVV--TVEEA---IGDA 330 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC---------EEC--CHHHH---GGGC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC---------EEe--cHHHH---HhCC
Confidence 56889999999987 777777777655 589999999987766643 121 111 11111 1357
Q ss_pred cEEEECCCCchhH-HHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEIP-QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+......++. .+..+.+|+||+++- ++.
T Consensus 331 DvVi~atgt~~~i~~~~l~~mk~ggilvn-vG~ 362 (494)
T 3ce6_A 331 DIVVTATGNKDIIMLEHIKAMKDHAILGN-IGH 362 (494)
T ss_dssp SEEEECSSSSCSBCHHHHHHSCTTCEEEE-CSS
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcEEEE-eCC
Confidence 9998887766654 478889999999876 443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.81 Score=35.71 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCC
Q 022372 152 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 226 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~ 226 (298)
..+|+-+|+|. .+..+++.+. .+..|+++|.+++.++.+++ ..+.++.+|..+.. .....
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-------------~g~~~i~gd~~~~~~l~~a~i~~ 71 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE-------------RGVRAVLGNAANEEIMQLAHLEC 71 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-------------TTCEEEESCTTSHHHHHHTTGGG
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-------------cCCCEEECCCCCHHHHHhcCccc
Confidence 35799999865 3333333321 12589999999998887653 23467888876521 11246
Q ss_pred ccEEEECCCCchhH---HHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++++..+-...- -...+.+.|+.+++.-..+
T Consensus 72 ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~ 107 (140)
T 3fwz_A 72 AKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHY 107 (140)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred CCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 89998776654322 2345667788887775554
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.14 Score=46.63 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=54.6
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCC--
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGW-- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--~~~-- 221 (298)
.+++|++||-.|+ |. |..+..+++..+ ..+|++++ +++..+.++ .+. . .++..+.. +..
T Consensus 139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga------~--~~~~~~~~~~~~~~~ 203 (349)
T 4a27_A 139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSV------T--HLFDRNADYVQEVKR 203 (349)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGS------S--EEEETTSCHHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCC------c--EEEcCCccHHHHHHH
Confidence 4789999999998 43 777788887653 25899988 555444443 221 1 12221110 000
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+.+|+|+-...-+.. +...+.|++||++++
T Consensus 204 ~~~~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~ 236 (349)
T 4a27_A 204 ISAEGVDIVLDCLCGDNT-GKGLSLLKPLGTYIL 236 (349)
T ss_dssp HCTTCEEEEEEECC--------CTTEEEEEEEEE
T ss_pred hcCCCceEEEECCCchhH-HHHHHHhhcCCEEEE
Confidence 012479999977765554 778899999999987
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.36 E-value=1.7 Score=40.59 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=49.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHcC------CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 153 MHALDIGSGTGYLTACFALMVG------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g------~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
-.|+|+|.|+|.++.-+.+.+. ...+++.||+|+.+.+.-++++... +++.+. +..+..++ .
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--------~~v~W~--~~l~~lp~-~- 149 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--------RNIHWH--DSFEDVPE-G- 149 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--------SSEEEE--SSGGGSCC-S-
T ss_pred cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--------CCeEEe--CChhhcCC-C-
Confidence 4799999999999887765432 2248999999999988666554321 256554 22222222 2
Q ss_pred ccEEEECCCCchhH
Q 022372 227 YDAIHVGAAAPEIP 240 (298)
Q Consensus 227 fD~Ii~~~~~~~l~ 240 (298)
.-+|+++..+..+|
T Consensus 150 ~~~viANE~fDAlP 163 (387)
T 1zkd_A 150 PAVILANEYFDVLP 163 (387)
T ss_dssp SEEEEEESSGGGSC
T ss_pred CeEEEeccccccCc
Confidence 44778887776666
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.77 Score=37.37 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcC-C-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--C--C-CC
Q 022372 152 GMHALDIGSGTGYLTACFALMVG-P-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--W--P-EF 224 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g-~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~--~-~~ 224 (298)
+++|+-+|+|. .+..+++.+. . +..|+++|.+++.++.+++ . .+.++.+|..+. + . ..
T Consensus 39 ~~~v~IiG~G~--~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~---------g~~~~~gd~~~~~~l~~~~~~ 103 (183)
T 3c85_A 39 HAQVLILGMGR--IGTGAYDELRARYGKISLGIEIREEAAQQHRS----E---------GRNVISGDATDPDFWERILDT 103 (183)
T ss_dssp TCSEEEECCSH--HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T---------TCCEEECCTTCHHHHHTBCSC
T ss_pred CCcEEEECCCH--HHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C---------CCCEEEcCCCCHHHHHhccCC
Confidence 56899998764 4433333321 1 2579999999988776543 1 234566776431 1 1 12
Q ss_pred CCccEEEECCCCchhHH---HHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~---~l~~~LkpGG~Lvi~v~~ 259 (298)
..+|+|+....-..... ...+.+.|++.++....+
T Consensus 104 ~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 104 GHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 46899998766543332 234455667777765443
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.4 Score=43.13 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----C
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----E 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~ 223 (298)
.+.+.+|+|+-||.|.++.-+.+. |-... |.++|+++.+.+.-+.|. +...+..+|+.+... .
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----------~~~~~~~~DI~~i~~~~i~~ 80 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----------QGKIMYVGDVRSVTQKHIQE 80 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----------TTCEEEECCGGGCCHHHHHH
T ss_pred cCCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----------CCCceeCCChHHccHHHhcc
Confidence 345679999999999999888876 43222 699999999887766664 233567788776432 1
Q ss_pred CCCccEEEECCCC
Q 022372 224 FAPYDAIHVGAAA 236 (298)
Q Consensus 224 ~~~fD~Ii~~~~~ 236 (298)
.+.+|+++.+.+.
T Consensus 81 ~~~~Dll~ggpPC 93 (295)
T 2qrv_A 81 WGPFDLVIGGSPC 93 (295)
T ss_dssp TCCCSEEEECCCC
T ss_pred cCCcCEEEecCCC
Confidence 1368999888764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.78 Score=42.78 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE----cCCCCCCC---
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV----GDGRKGWP--- 222 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~----gD~~~~~~--- 222 (298)
++.+|+-+|+|. |...+.+++.+| .+|+++|.+++..+.+++ + +. +++. ++...+..
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~-l---Ga---------~~~~l~~~~~~~~gya~~~ 247 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRS-V---GA---------QWLDLGIDAAGEGGYAREL 247 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHH-T---TC---------EECCCC-------------
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC---------eEEeccccccccccchhhh
Confidence 568999999997 888787787776 589999999998887754 1 11 1111 01111110
Q ss_pred --------------CCCCccEEEECCCC-----ch-hHHHHHhccccCcEEEE
Q 022372 223 --------------EFAPYDAIHVGAAA-----PE-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 --------------~~~~fD~Ii~~~~~-----~~-l~~~l~~~LkpGG~Lvi 255 (298)
.....|+|+..... +. +.++..+.+|||++++=
T Consensus 248 ~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 248 SEAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred hHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 01468999876422 22 44899999999887764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=90.46 E-value=0.12 Score=46.34 Aligned_cols=53 Identities=30% Similarity=0.431 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCCCC--CCCCCccEEEECCCCc--------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 208 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP--------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 208 ~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~~--------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++++++|..+.. .+.++||+|+++++.. .+.+++.++|||||.+++.+++
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 57889999987632 2347899999999862 1225677899999999998875
Q ss_pred C
Q 022372 260 I 260 (298)
Q Consensus 260 ~ 260 (298)
.
T Consensus 100 ~ 100 (297)
T 2zig_A 100 V 100 (297)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.66 Score=43.63 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----C--
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----E-- 223 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~-- 223 (298)
++.+|+-+|+|. |...+.+++.+| .+|++.|.++...+.+++ +..... .....+...+.....+. +
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~-~G~~~~----~~~~~~~~d~~~~~~ya~e~s~~~ 261 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVAS-LGAKFI----AVEDEEFKAAETAGGYAKEMSGEY 261 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHH-TTCEEC----CCCC-----------------CHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH-cCCcee----ecccccccccccccchhhhcchhh
Confidence 568999999997 888888888776 589999999998887764 211000 00000000001111111 0
Q ss_pred -----------CCCccEEEECCCCc-----h-hHHHHHhccccCcEEEE
Q 022372 224 -----------FAPYDAIHVGAAAP-----E-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 -----------~~~fD~Ii~~~~~~-----~-l~~~l~~~LkpGG~Lvi 255 (298)
-...|+|+.....+ . +.++..+.+|||.+++=
T Consensus 262 ~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVD 310 (405)
T 4dio_A 262 QVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVD 310 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEE
T ss_pred hhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEE
Confidence 02579998764322 2 45899999999988775
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.02 E-value=0.75 Score=40.89 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~~~~~~fD 228 (298)
+|.+|+-+|+|. |...+..++..| .+|++.|.+++..+.++ ..+ ++... .+..+. ....|
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~----~~g---------~~~~~~~~l~~~---l~~aD 215 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIA----EMG---------MEPFHISKAAQE---LRDVD 215 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTT---------SEEEEGGGHHHH---TTTCS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHH----HCC---------CeecChhhHHHH---hcCCC
Confidence 578999999886 665555555544 48999999987654432 211 12221 111111 13589
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+...+..-+.+...+.+|+|+.++-
T Consensus 216 vVi~~~p~~~i~~~~l~~mk~~~~lin 242 (293)
T 3d4o_A 216 VCINTIPALVVTANVLAEMPSHTFVID 242 (293)
T ss_dssp EEEECCSSCCBCHHHHHHSCTTCEEEE
T ss_pred EEEECCChHHhCHHHHHhcCCCCEEEE
Confidence 999988775555667788999987764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.84 Score=40.65 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~~~~~~fD 228 (298)
++.+|+-+|+|. |...+..++..| .+|++.|.+++..+.+.+ .+ ++... .+..+. ....|
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~----~g---------~~~~~~~~l~~~---l~~aD 217 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITE----MG---------LVPFHTDELKEH---VKDID 217 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TT---------CEEEEGGGHHHH---STTCS
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----CC---------CeEEchhhHHHH---hhCCC
Confidence 578999999976 555555555544 589999999875544322 11 12221 111111 13589
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+...+..-+.+...+.+|+|++++=
T Consensus 218 vVi~~~p~~~i~~~~~~~mk~g~~lin 244 (300)
T 2rir_A 218 ICINTIPSMILNQTVLSSMTPKTLILD 244 (300)
T ss_dssp EEEECCSSCCBCHHHHTTSCTTCEEEE
T ss_pred EEEECCChhhhCHHHHHhCCCCCEEEE
Confidence 999988875555667888999887654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.27 Score=44.99 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=51.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---CCCcc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAPYD 228 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~~~fD 228 (298)
.+++|+-||.|.++.-+.+. |-. ..|.++|+++.+.+.-+.|+. ...+..+|..+.... ...+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~~DI~~~~~~~~~~~~~D 71 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP-----------ETNLLNRNIQQLTPQVIKKWNVD 71 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECCCGGGCCHHHHHHTTCC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC-----------CCceeccccccCCHHHhccCCCC
Confidence 47999999999999988876 332 358899999998888777752 233556776653221 12589
Q ss_pred EEEECCCC
Q 022372 229 AIHVGAAA 236 (298)
Q Consensus 229 ~Ii~~~~~ 236 (298)
+++.+.+.
T Consensus 72 ~l~ggpPC 79 (333)
T 4h0n_A 72 TILMSPPC 79 (333)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99888764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=2.3 Score=36.55 Aligned_cols=77 Identities=10% Similarity=-0.031 Sum_probs=48.9
Q ss_pred CCCEEEEEcCC--CcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---
Q 022372 151 PGMHALDIGSG--TGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--- 222 (298)
Q Consensus 151 ~g~~VLDiG~G--sG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--- 222 (298)
.+++||-.|++ +|. ++..|++. +.+|+.++.++...+.+.+..... +..++.++..|..+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA---GARLIFTYAGERLEKSVHELAGTL------DRNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHTS------SSCCCEEEECCCSSSHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC---CCEEEEecCchHHHHHHHHHHHhc------CCCCceEEeCCCCCHHHHHH
Confidence 46789999976 333 33344443 268999998876666655544432 22478899999876321
Q ss_pred -------CCCCccEEEECCCC
Q 022372 223 -------EFAPYDAIHVGAAA 236 (298)
Q Consensus 223 -------~~~~fD~Ii~~~~~ 236 (298)
..+..|.++.++..
T Consensus 77 ~~~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHhCCeeEEEEcccc
Confidence 01368999888753
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.13 E-value=2.5 Score=36.65 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCC------------HHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHI------------PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s------------~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+++||-.|+++|. +..+++.+ ..+.+|+.+|.+ .+.++.+.+.+...+ .++.++..|.
T Consensus 9 ~gk~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~D~ 80 (287)
T 3pxx_A 9 QDKVVLVTGGARGQ-GRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-------RKAYTAEVDV 80 (287)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-------SCEEEEECCT
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-------CceEEEEccC
Confidence 36789999887653 33333322 223689999987 666666665555432 5788899998
Q ss_pred CCCCC----------CCCCccEEEECCCCch-----------------------hHHHHHhccccCcEEEE
Q 022372 218 RKGWP----------EFAPYDAIHVGAAAPE-----------------------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~----------~~~~fD~Ii~~~~~~~-----------------------l~~~l~~~LkpGG~Lvi 255 (298)
.+... ..+..|+++.++.... +.+.+...++.+|+++.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~ 151 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT 151 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence 75210 1136899998876410 11445567778888776
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=88.93 E-value=0.4 Score=44.56 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~ 194 (298)
++.+|+-+|+|. |...+.+++.+| .+|+.+|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 578999999997 777788888776 479999999887776653
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=88.90 E-value=0.48 Score=43.18 Aligned_cols=76 Identities=9% Similarity=0.003 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCC-CcEE-EEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---CC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGP-QGRA-VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FA 225 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~-~~~V-~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~~ 225 (298)
...+|+|+-||.|.++.-+.+. |- -..+ .++|+++.+.+.-+.|... . ++.+|..+.... ..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~-----------~-~~~~DI~~~~~~~i~~~ 75 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE-----------E-VQVKNLDSISIKQIESL 75 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC-----------C-CBCCCTTTCCHHHHHHT
T ss_pred CCCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC-----------C-cccCChhhcCHHHhccC
Confidence 3468999999999999988876 32 2356 7999999999888877632 1 456777654321 12
Q ss_pred CccEEEECCCCchh
Q 022372 226 PYDAIHVGAAAPEI 239 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l 239 (298)
.+|+++.+.+....
T Consensus 76 ~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 76 NCNTWFMSPPCQPY 89 (327)
T ss_dssp CCCEEEECCCCTTC
T ss_pred CCCEEEecCCccCc
Confidence 58999988875444
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.46 E-value=1.3 Score=34.19 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCC
Q 022372 152 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 226 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~ 226 (298)
..+|+-+|+|. .+..+++.+. .+.+|+++|.+++.++.+++ ..+.++.+|..+.. .....
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-------------~~~~~~~gd~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED-------------EGFDAVIADPTDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-------------TTCEEEECCTTCHHHHHHSCCTT
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-------------CCCcEEECCCCCHHHHHhCCccc
Confidence 45799999854 5555544431 12589999999988777653 23467888876521 11246
Q ss_pred ccEEEECCCCchhH---HHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|.|+...+-.... ....+.+. ..+++.-..+
T Consensus 71 ~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~ 105 (141)
T 3llv_A 71 VSAVLITGSDDEFNLKILKALRSVS-DVYAIVRVSS 105 (141)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHHC-CCCEEEEESC
T ss_pred CCEEEEecCCHHHHHHHHHHHHHhC-CceEEEEEcC
Confidence 89998877743322 22333444 5556554443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=0.81 Score=52.53 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||-.|+ |. |..+..+|+..| .+|++++.+++..+.+++.+...+. ..+ +.....+
T Consensus 1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~G--a~Viat~~s~~k~~~l~~~~~~lga------~~v--~~~~~~~~~~~i~ 1733 (2512)
T 2vz8_A 1664 RMQPGESVLIHSGSGGVGQAAIAIALSRG--CRVFTTVGSAEKRAYLQARFPQLDE------TCF--ANSRDTSFEQHVL 1733 (2512)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTTCCS------TTE--EESSSSHHHHHHH
T ss_pred cCCCCCEEEEEeCChHHHHHHHHHHHHcC--CEEEEEeCChhhhHHHHhhcCCCCc------eEE--ecCCCHHHHHHHH
Confidence 4789999999975 43 888889999876 5899999999888887765322111 222 1111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......+|+|+.... ....+...+.|++||+++. ++
T Consensus 1734 ~~t~g~GvDvVld~~g-~~~l~~~l~~L~~~Gr~V~-iG 1770 (2512)
T 2vz8_A 1734 RHTAGKGVDLVLNSLA-EEKLQASVRCLAQHGRFLE-IG 1770 (2512)
T ss_dssp HTTTSCCEEEEEECCC-HHHHHHHHTTEEEEEEEEE-CC
T ss_pred HhcCCCCceEEEECCC-chHHHHHHHhcCCCcEEEE-ee
Confidence 0112246999988665 5667888999999999886 44
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=0.92 Score=35.94 Aligned_cols=97 Identities=15% Similarity=0.005 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--C--CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--W--PE 223 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~--~~ 223 (298)
..++.+|+-+|+|. |...+..+...+ .+|+++|.+++.++.+++ . ..+.++.+|..+. + ..
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~~~~~~~---~---------~g~~~~~~d~~~~~~l~~~~ 81 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYAFHRLNS---E---------FSGFTVVGDAAEFETLKECG 81 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGGGGSCT---T---------CCSEEEESCTTSHHHHHTTT
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHh---c---------CCCcEEEecCCCHHHHHHcC
Confidence 34578999999865 443333333223 589999999876544321 1 2234566665431 0 11
Q ss_pred CCCccEEEECCCCchhHHHHH---hccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAAPEIPQALI---DQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~---~~LkpGG~Lvi~v~~ 259 (298)
...+|+|+...........+. +.+.+...++....+
T Consensus 82 ~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 82 MEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp GGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred cccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 236899998877655444433 334455566664443
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=87.70 E-value=1.6 Score=37.52 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------- 222 (298)
.++++|-.|+++|. +..+++.+ ..+.+|+.++.+++.++...+.+. .++.++..|..+...
T Consensus 7 ~gk~~lVTGas~gI-G~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 7 QGKKAIVIGGTHGM-GLATVRRLVEGGAEVLLTGRNESNIARIREEFG----------PRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC----------CcceEEEccCCCHHHHHHHHHH
Confidence 46789999977653 33333332 223689999999988776655441 467888999875210
Q ss_pred ---CCCCccEEEECCCC
Q 022372 223 ---EFAPYDAIHVGAAA 236 (298)
Q Consensus 223 ---~~~~fD~Ii~~~~~ 236 (298)
..++.|+++.++..
T Consensus 76 ~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 76 AGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHSSEEEEEECCCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11468999888754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.24 E-value=2 Score=39.63 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.++++.+.. ...+.+||.++-+.|.++..++.. .++.+.-|-......+.|+..+++. ..++++... .
T Consensus 27 ~~ll~~~~~-~~~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~----~~~~~~~~~--~ 94 (375)
T 4dcm_A 27 EYLLQQLDD-TEIRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGID----ESSVKFLDS--T 94 (375)
T ss_dssp HHHHHTTTT-CCCCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCC----GGGSEEEET--T
T ss_pred HHHHHhhhh-ccCCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCC----ccceEeccc--c
Confidence 455665542 235568999999999999888753 2344533555555667888887653 234665532 2
Q ss_pred CCCCCCCCccEEEECCCCc-----hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi 255 (298)
+.. .+.||+++...+.. .....+...|++|+++++
T Consensus 95 ~~~--~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 95 ADY--PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIA 134 (375)
T ss_dssp SCC--CSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred ccc--ccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 222 25799998877653 344778889999999976
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.03 E-value=0.29 Score=45.21 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=54.6
Q ss_pred CCCCEEEEEc--CCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------
Q 022372 150 KPGMHALDIG--SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 220 (298)
Q Consensus 150 ~~g~~VLDiG--~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------ 220 (298)
++|++||-+| +|. |..+..+++..| .+|++++.+++..+.+++ .+. ..+ +..+..+.
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~~~--~~~~~~~~~~~v~~ 234 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKA----QGA------VHV--CNAASPTFMQDLTE 234 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHH----TTC------SCE--EETTSTTHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh----CCC------cEE--EeCCChHHHHHHHH
Confidence 6789999994 443 677788888776 479999999998888864 222 222 22111110
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccc
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLK 248 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~Lk 248 (298)
......+|+|+-........+.+.+.|+
T Consensus 235 ~t~~~g~d~v~d~~g~~~~~~~~~~~l~ 262 (379)
T 3iup_A 235 ALVSTGATIAFDATGGGKLGGQILTCME 262 (379)
T ss_dssp HHHHHCCCEEEESCEEESHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCchhhHHHHHHhcc
Confidence 0011269999988777666666666664
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=86.98 E-value=1.4 Score=39.57 Aligned_cols=70 Identities=24% Similarity=0.167 Sum_probs=51.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~Ii 231 (298)
++|+|+=||.|.++.-+.+. |- ..+.++|+++.+.+.-+.|. + -.++.+|..+... +....|+++
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~-~~v~a~e~d~~a~~ty~~N~-----------~-~~~~~~DI~~i~~~~~~~~D~l~ 66 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GF-RIICANEYDKSIWKTYESNH-----------S-AKLIKGDISKISSDEFPKCDGII 66 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TC-EEEEEEECCTTTHHHHHHHC-----------C-SEEEESCGGGCCGGGSCCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHC-CC-EEEEEEeCCHHHHHHHHHHC-----------C-CCcccCChhhCCHhhCCcccEEE
Confidence 47999999999999888776 32 46789999998888777663 1 2567788776432 224689998
Q ss_pred ECCCC
Q 022372 232 VGAAA 236 (298)
Q Consensus 232 ~~~~~ 236 (298)
.+.++
T Consensus 67 ggpPC 71 (331)
T 3ubt_Y 67 GGPPS 71 (331)
T ss_dssp CCCCG
T ss_pred ecCCC
Confidence 88775
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=1.7 Score=37.10 Aligned_cols=78 Identities=15% Similarity=-0.004 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g--~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------ 222 (298)
.+.+||-.|+ +|.++..+++.+. .+.+|+.++.+++..+...+.+...+ .++.++.+|..+...
T Consensus 3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dl~~~~~~~~~~~ 74 (276)
T 1wma_A 3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-------LSPRFHQLDIDDLQSIRALRD 74 (276)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-------CCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC-------CeeEEEECCCCCHHHHHHHHH
Confidence 4567887775 4555655554432 23689999999887777666665432 467888899875210
Q ss_pred ----CCCCccEEEECCCC
Q 022372 223 ----EFAPYDAIHVGAAA 236 (298)
Q Consensus 223 ----~~~~fD~Ii~~~~~ 236 (298)
..+.+|+++.++..
T Consensus 75 ~~~~~~g~id~li~~Ag~ 92 (276)
T 1wma_A 75 FLRKEYGGLDVLVNNAGI 92 (276)
T ss_dssp HHHHHHSSEEEEEECCCC
T ss_pred HHHHhcCCCCEEEECCcc
Confidence 01368999887753
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=0.65 Score=44.05 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.-.|.+|+-+|+|. |...+..++.+| .+|++.|+++.....|.. .+ .++ .+..+.. ...
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~----~G---------~~v--~~Leeal---~~A 276 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACM----DG---------FRL--VKLNEVI---RQV 276 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TT---------CEE--CCHHHHT---TTC
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHH----cC---------CEe--ccHHHHH---hcC
Confidence 44789999999998 777777777665 589999999865444421 11 111 1111111 246
Q ss_pred cEEEECCCCchhH-HHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAPEIP-QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|+......++. .+.++.+|+|++++- ++.+
T Consensus 277 DIVi~atgt~~lI~~e~l~~MK~gailIN-vgrg 309 (435)
T 3gvp_A 277 DIVITCTGNKNVVTREHLDRMKNSCIVCN-MGHS 309 (435)
T ss_dssp SEEEECSSCSCSBCHHHHHHSCTTEEEEE-CSST
T ss_pred CEEEECCCCcccCCHHHHHhcCCCcEEEE-ecCC
Confidence 9998865555554 588899999987654 5543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=86.56 E-value=5.8 Score=36.03 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC---------------CccCCCCEEEEE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------------PLLKEGSLSVHV 214 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~---------------~~l~~~~v~~~~ 214 (298)
.+...|+.+|||.......+... .++.+++-+|. |+.++.-++.+.+.+.. ..+..++.+++-
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQM-FPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHH-CTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCc-CCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 45578999999999888888765 24568888887 88888877777654210 001126789999
Q ss_pred cCCCCC-C--------CCCCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 215 GDGRKG-W--------PEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 215 gD~~~~-~--------~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
.|..+. + .+.....++++-.++.-+ .+.+.+.. |+|.+++
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~ 230 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWIS 230 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEE
Confidence 998862 2 122345677777765322 23333434 7777653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=86.42 E-value=3.4 Score=36.27 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHH-HHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~-l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------- 221 (298)
.+++||-.|+++| ++..+++.+ ..+.+|+.++.+++. .+...+.....+ .++.++..|..+..
T Consensus 46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG-------VKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT-------CCEEEEESCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-------CcEEEEECCCCCHHHHHHHHH
Confidence 4678999997765 333333332 122689999988653 344433333322 57888999987521
Q ss_pred ---CCCCCccEEEECCCCc--------------------------hhHHHHHhccccCcEEEEE
Q 022372 222 ---PEFAPYDAIHVGAAAP--------------------------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~~--------------------------~l~~~l~~~LkpGG~Lvi~ 256 (298)
...+..|+++.++... .+.+.+.+.++.+|+++..
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 0113689998886531 0114556677888987763
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.19 E-value=8.1 Score=29.00 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCC
Q 022372 152 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 226 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~ 226 (298)
+++|+-+|+| ..+..+++.+. .+.+|+.+|.+++.++..++. ..+.++.+|..+.. .....
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~------------~~~~~~~~d~~~~~~l~~~~~~~ 69 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE------------IDALVINGDCTKIKTLEDAGIED 69 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------------CSSEEEESCTTSHHHHHHTTTTT
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh------------cCcEEEEcCCCCHHHHHHcCccc
Confidence 4689999874 45544444331 125899999998876655432 12345666654310 11246
Q ss_pred ccEEEECCCCchhH---HHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~ 258 (298)
+|+|+......... ..+.+.++++ .+++...
T Consensus 70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~ 103 (140)
T 1lss_A 70 ADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARIS 103 (140)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHTTCC-CEEEECS
T ss_pred CCEEEEeeCCchHHHHHHHHHHHcCCC-EEEEEec
Confidence 89998887654322 2344556665 5554333
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.06 E-value=0.35 Score=43.87 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCCCC--CCCCCccEEEECCCCc--------------------hhHHHHHhccccCcEEEEEECCC
Q 022372 207 EGSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP--------------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 207 ~~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~~--------------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+..++++|..+.. .+.++||+|+++++.. ...+++.++|||||.+++.+++.
T Consensus 12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 357889999976422 2347899999998862 12367789999999999988764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=85.76 E-value=2.9 Score=30.54 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC-CC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG-PQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g-~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
.+.+|+-+|+ |..+..+++.+. .+ .+|+++|.+++..+... . ..+.+...|..+.. ....
T Consensus 4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---------~~~~~~~~d~~~~~~~~~~~~ 68 (118)
T 3ic5_A 4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---------MGVATKQVDAKDEAGLAKALG 68 (118)
T ss_dssp TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---------TTCEEEECCTTCHHHHHHHTT
T ss_pred CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---------CCCcEEEecCCCHHHHHHHHc
Confidence 3468999998 555555544331 12 58999999988766554 1 34566777765411 0013
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+|+...+... ...+.+..+..|.-++
T Consensus 69 ~~d~vi~~~~~~~-~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 69 GFDAVISAAPFFL-TPIIAKAAKAAGAHYF 97 (118)
T ss_dssp TCSEEEECSCGGG-HHHHHHHHHHTTCEEE
T ss_pred CCCEEEECCCchh-hHHHHHHHHHhCCCEE
Confidence 6899988876543 3444444444444443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=85.63 E-value=6.9 Score=34.28 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCc--H---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----
Q 022372 151 PGMHALDIGSGTG--Y---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG--~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---- 221 (298)
.++++|-.|+++| . ++..|++. | .+|+.++.++...+.+++..... .++.++..|..+..
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~-G--~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~ 98 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA-G--AELAFTYQGDALKKRVEPLAEEL--------GAFVAGHCDVADAASIDA 98 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT-T--CEEEEEECSHHHHHHHHHHHHHH--------TCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC-C--CEEEEEcCCHHHHHHHHHHHHhc--------CCceEEECCCCCHHHHHH
Confidence 4678999998743 2 33344443 2 68999999976655554443332 46788889987521
Q ss_pred ------CCCCCccEEEECCCC
Q 022372 222 ------PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ------~~~~~fD~Ii~~~~~ 236 (298)
...+..|+++.++..
T Consensus 99 ~~~~~~~~~g~iD~lVnnAG~ 119 (293)
T 3grk_A 99 VFETLEKKWGKLDFLVHAIGF 119 (293)
T ss_dssp HHHHHHHHTSCCSEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEECCcc
Confidence 012478999988764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.40 E-value=5 Score=34.81 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCC-HHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHI-PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s-~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------- 221 (298)
.++++|-.|+++|. +..+++.+ ..+.+|+.++.. .+..+...+.+...+ .++.++..|..+..
T Consensus 30 ~gk~~lVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 30 AGKTAFVTGGSRGI-GAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG-------GRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------CcEEEEECCCCCHHHHHHHHH
Confidence 46789999987653 33333322 222588888654 455555555554432 57888999987521
Q ss_pred ---CCCCCccEEEECCCCc-------------------------hhHHHHHhccccCcEEEEE
Q 022372 222 ---PEFAPYDAIHVGAAAP-------------------------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~~-------------------------~l~~~l~~~LkpGG~Lvi~ 256 (298)
...++.|+++.++... .+.+.+.+.++.+|+++..
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0113689999887641 0114456677888888774
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=84.96 E-value=4 Score=35.24 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeC-CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEH-IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~-s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------ 222 (298)
.++++|-.|+++|. +..+++.+ ..+.+|+.++. +++..+...+.+...+ .++.++..|..+...
T Consensus 17 ~~k~~lVTGas~gI-G~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 17 DGKVALVTGSGRGI-GAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG-------SDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCEEEESCTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHHH
Confidence 46788988877653 33333332 12258888765 4555665555555432 578889999875210
Q ss_pred ----CCCCccEEEECCCCc-------------------------hhHHHHHhccccCcEEEEEE
Q 022372 223 ----EFAPYDAIHVGAAAP-------------------------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 223 ----~~~~fD~Ii~~~~~~-------------------------~l~~~l~~~LkpGG~Lvi~v 257 (298)
..++.|+++.++... .+.+.+.+.++.+|+++...
T Consensus 89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 113689998887641 01145667788889888743
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=84.25 E-value=3.9 Score=35.94 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCC--HHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHI--PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s--~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++|-.|+++| ++..+++.+ ..+.+|+.++.+ +...+...+.+...+ .++.++..|..+..
T Consensus 48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~ 119 (294)
T 3r3s_A 48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-------RKAVLLPGDLSDESFARSLV 119 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT-------CCEEECCCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC-------CcEEEEEecCCCHHHHHHHH
Confidence 4678999997665 343333332 222589988886 334444444444432 57888888887521
Q ss_pred ----CCCCCccEEEECCCCch--------------------------hHHHHHhccccCcEEEEE
Q 022372 222 ----PEFAPYDAIHVGAAAPE--------------------------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~~~--------------------------l~~~l~~~LkpGG~Lvi~ 256 (298)
...+..|+++.++.... +.+.+...++.+|++|..
T Consensus 120 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 120 HKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp HHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 01146899988876410 114456678888988773
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.21 E-value=2.3 Score=37.58 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.|+.+|--|+++|. .+..|++. ..+|+..|.+++.++.+.+.+ + .++..+..|..+..
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~---Ga~V~i~~r~~~~l~~~~~~~---g-------~~~~~~~~Dv~~~~~v~~~~ 94 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE---GARVFITGRRKDVLDAAIAEI---G-------GGAVGIQADSANLAELDRLY 94 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH---C-------TTCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHc---C-------CCeEEEEecCCCHHHHHHHH
Confidence 46788999988764 33334443 269999999999887765543 1 45677888887521
Q ss_pred ----CCCCCccEEEECCCCc------h-------------------hHHHHHhccccCcEEEE
Q 022372 222 ----PEFAPYDAIHVGAAAP------E-------------------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~~------~-------------------l~~~l~~~LkpGG~Lvi 255 (298)
...++.|+++.++... + +.+.+.+.|+.+|.+|.
T Consensus 95 ~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIn 157 (273)
T 4fgs_A 95 EKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVL 157 (273)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEE
Confidence 1125789998887631 0 11456678888888776
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=83.96 E-value=0.63 Score=47.52 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||-.|+ |. |..+..+++..| .+|++++.++ ..+..+ ++...+ +.....+
T Consensus 342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~-k~~~l~-----------lga~~v--~~~~~~~~~~~i~ 405 (795)
T 3slk_A 342 GLRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASED-KWQAVE-----------LSREHL--ASSRTCDFEQQFL 405 (795)
T ss_dssp CCCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGG-GGGGSC-----------SCGGGE--ECSSSSTHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChH-Hhhhhh-----------cChhhe--eecCChhHHHHHH
Confidence 4679999999995 43 889999999886 4799988554 211111 111111 1111000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.......+|+|+-...- ...+...+.|+++|+++. ++.
T Consensus 406 ~~t~g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~v~-iG~ 443 (795)
T 3slk_A 406 GATGGRGVDVVLNSLAG-EFADASLRMLPRGGRFLE-LGK 443 (795)
T ss_dssp HHSCSSCCSEEEECCCT-TTTHHHHTSCTTCEEEEE-CCS
T ss_pred HHcCCCCeEEEEECCCc-HHHHHHHHHhcCCCEEEE-ecc
Confidence 01122469999987654 455888999999999987 553
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.55 E-value=3.4 Score=35.54 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEE-eCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGV-EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~gi-D~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------ 222 (298)
.++++|-.|+++|. +..+++.+ ..+.+|+.+ +.+++..+...+.+...+ .++.++..|..+...
T Consensus 7 ~~k~vlVTGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 7 TNRTIVVAGAGRDI-GRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG-------RSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT-------SCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHH
Confidence 46789999977653 33333322 122578887 777777666666555432 467888899875210
Q ss_pred ----CCCCccEEEECCC
Q 022372 223 ----EFAPYDAIHVGAA 235 (298)
Q Consensus 223 ----~~~~fD~Ii~~~~ 235 (298)
..++.|+++.++.
T Consensus 79 ~~~~~~g~id~lv~nAg 95 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAG 95 (259)
T ss_dssp HHHHHHCSEEEEEECCC
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1146899988875
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=83.52 E-value=5.4 Score=35.00 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022372 151 PGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 221 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------- 221 (298)
.+++||-.|+++ ..++..+++.+ ..+.+|+.++.+++..+..++..... +++.++..|..+..
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL--------GVKLTVPCDVSDAESVDNMFK 100 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH--------TCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHHHH
Confidence 367899999864 23333333322 12268999999987655555444432 34578888987521
Q ss_pred ---CCCCCccEEEECCCC
Q 022372 222 ---PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~ 236 (298)
...+..|+++.++..
T Consensus 101 ~~~~~~g~iD~lVnnAG~ 118 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVAF 118 (296)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 011468999988864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=83.49 E-value=4.3 Score=37.96 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCC
Q 022372 152 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 226 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~ 226 (298)
+++|+-+|+|. ++..+++.+. .+..|+++|.+++.++.+++ ..+.++.||..+.. ..-..
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-------------~g~~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRK-------------FGMKVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-------------TTCCCEESCTTCHHHHHHTTTTT
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-------------CCCeEEEcCCCCHHHHHhcCCCc
Confidence 46789998854 4444444331 12589999999999988763 13457889987621 12246
Q ss_pred ccEEEECCCCchhH---HHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|+|++...-...- -...+.+.|...++.-..+
T Consensus 69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred cCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 89988877654332 3445667788788775544
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=83.02 E-value=1.8 Score=41.24 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.-.|++|+-+|.|. |...+..++.+| .+|++.|+++.....+. ..+ +++. +..+.. ...
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~----~~G---------~~vv--~LeElL---~~A 303 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAA----MDG---------FEVV--TLDDAA---STA 303 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHH----HTT---------CEEC--CHHHHG---GGC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHH----hcC---------ceec--cHHHHH---hhC
Confidence 45789999999997 777777777665 59999999986543332 111 1221 111111 246
Q ss_pred cEEEECCCCchhH-HHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEIP-QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+......++. .+.++.+|+|++++- ++.
T Consensus 304 DIVv~atgt~~lI~~e~l~~MK~GAILIN-vGR 335 (464)
T 3n58_A 304 DIVVTTTGNKDVITIDHMRKMKDMCIVGN-IGH 335 (464)
T ss_dssp SEEEECCSSSSSBCHHHHHHSCTTEEEEE-CSS
T ss_pred CEEEECCCCccccCHHHHhcCCCCeEEEE-cCC
Confidence 8888876655554 788899999988764 543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=82.86 E-value=10 Score=31.82 Aligned_cols=93 Identities=12% Similarity=-0.075 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~ 226 (298)
...+|+-+|+ |..+..+++.+...+.|+++|.+++.++.++ ..+.++.+|..+.. ..-..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~--------------~~~~~i~gd~~~~~~l~~a~i~~ 71 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR--------------SGANFVHGDPTRVSDLEKANVRG 71 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH--------------TTCEEEESCTTCHHHHHHTTCTT
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh--------------cCCeEEEcCCCCHHHHHhcCcch
Confidence 4468999987 6788888887744334999999998776553 13578899987521 11246
Q ss_pred ccEEEECCCCchh---HHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|.|++...-... .....+.+.|+..++.-+.+
T Consensus 72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 8999887665432 23445567777777776554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=82.68 E-value=0.85 Score=39.65 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=55.3
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCH-------------------HHHHHHHHHHHHhccCCccCCCCE
Q 022372 152 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 152 g~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~-------------------~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
+.+|+-+|+|. |. .+..|++. |- ++++.+|.+. ..++.+.+++.+.... -++
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~-Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-----~~v 103 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASA-GV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH-----IAI 103 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHH-TC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT-----SEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHc-CC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC-----cEE
Confidence 46899999985 44 34445554 43 5899999987 6777777777653211 234
Q ss_pred EEEEcCCCCCC--CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 211 SVHVGDGRKGW--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 211 ~~~~gD~~~~~--~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+.+..+..... .....||+|+......+....+.+..+..|.-++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~ 151 (249)
T 1jw9_B 104 TPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVS 151 (249)
T ss_dssp EEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44433332100 00136899998876544433444444444544443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=82.58 E-value=6.1 Score=33.88 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=49.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
++||-.| + |+++..+++.+- .+.+|++++.++...+... . .+++++.+|..+.. ...+|+|+
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~---------~~~~~~~~D~~d~~--~~~~d~vi 68 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A---------SGAEPLLWPGEEPS--LDGVTHLL 68 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H---------TTEEEEESSSSCCC--CTTCCEEE
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h---------CCCeEEEecccccc--cCCCCEEE
Confidence 5899999 4 898888877662 2358999999886544332 1 46889999987743 46789998
Q ss_pred ECCCC
Q 022372 232 VGAAA 236 (298)
Q Consensus 232 ~~~~~ 236 (298)
..++.
T Consensus 69 ~~a~~ 73 (286)
T 3ius_A 69 ISTAP 73 (286)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 88764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.45 E-value=3.6 Score=35.74 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CC------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WP------ 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-~~------ 222 (298)
.+.+||-.|+++| ++..+++.+ ..+.+|+.++.+++..+.+.+.+...+ ..++.++..|..+. ..
T Consensus 11 ~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 11 KRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------HENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp -CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------CCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CCceEEEEccCCCcHHHHHHHHH
Confidence 4678888887655 343343332 223699999999988887777765532 25789999998764 10
Q ss_pred ----CCCCccEEEECCCC
Q 022372 223 ----EFAPYDAIHVGAAA 236 (298)
Q Consensus 223 ----~~~~fD~Ii~~~~~ 236 (298)
..+..|+++.+++.
T Consensus 84 ~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp HHHHHHSSCCEEEECCCC
T ss_pred HHHHhCCCCCEEEECCcc
Confidence 01478999999875
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=82.21 E-value=5.5 Score=34.22 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCC--c--H-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----
Q 022372 151 PGMHALDIGSGT--G--Y-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---- 221 (298)
Q Consensus 151 ~g~~VLDiG~Gs--G--~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---- 221 (298)
.|+++|--|+++ | . .+..|++. | .+|+..+.+++..+.+.+.+.+.+ ..++.++..|..+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~-G--a~Vvi~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL-G--AKLVFTYRKERSRKELEKLLEQLN------QPEAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT-T--CEEEEEESSGGGHHHHHHHHGGGT------CSSCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC------CCcEEEEEccCCCHHHHHH
Confidence 478899999643 3 2 33445554 3 699999999988888777665532 257888899987521
Q ss_pred ------CCCCCccEEEECCC
Q 022372 222 ------PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 ------~~~~~fD~Ii~~~~ 235 (298)
...+..|.++.++.
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHhCCCCEEEeccc
Confidence 11257899988865
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=81.94 E-value=4.9 Score=34.60 Aligned_cols=78 Identities=14% Similarity=0.006 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCH---HHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIP---ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~---~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.++++|-.|+++| ++..+++.+. .+.+|+.++.+. +.++...+.+...+ .++.++..|..+..
T Consensus 10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~ 81 (262)
T 3ksu_A 10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG-------AKVALYQSDLSNEEEVAKL 81 (262)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT-------CEEEEEECCCCSHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC-------CcEEEEECCCCCHHHHHHH
Confidence 4578898887765 4555555442 335888887654 34444444443322 57888999987521
Q ss_pred -----CCCCCccEEEECCCC
Q 022372 222 -----PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 -----~~~~~fD~Ii~~~~~ 236 (298)
...++.|+++.++..
T Consensus 82 ~~~~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 82 FDFAEKEFGKVDIAINTVGK 101 (262)
T ss_dssp HHHHHHHHCSEEEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 011468999988763
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.53 E-value=6.2 Score=33.23 Aligned_cols=77 Identities=14% Similarity=-0.012 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--------- 221 (298)
++++|-.|+++| ++..+++.+ ..+.+|+.++.+++..+...+.+...+ .++.++..|..+..
T Consensus 5 ~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 76 (247)
T 3lyl_A 5 EKVALVTGASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-------FKARGLVLNISDIESIQNFFAEI 76 (247)
T ss_dssp TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEecCCCHHHHHHHHHHH
Confidence 568888886654 343333332 123689999999988887777666533 47888999987521
Q ss_pred -CCCCCccEEEECCCC
Q 022372 222 -PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 77 ~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 77 KAENLAIDILVNNAGI 92 (247)
T ss_dssp HHTTCCCSEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 112468999988764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=80.74 E-value=4.1 Score=34.89 Aligned_cols=91 Identities=19% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~--s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.|.+||-||.|. |...+......| ..|+.++. ++++.+.+ .. .+++++..+..... ...+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~~~l~~l~----~~---------~~i~~i~~~~~~~d--L~~a 92 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVSAEINEWE----AK---------GQLRVKRKKVGEED--LLNV 92 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCCHHHHHHH----HT---------TSCEEECSCCCGGG--SSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHH----Hc---------CCcEEEECCCCHhH--hCCC
Confidence 578999999885 322222222223 46666654 44433332 11 45677765544322 2468
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|++...-+.+-..+.+.-+ -|.+|-.+.+
T Consensus 93 dLVIaAT~d~~~N~~I~~~ak-~gi~VNvvD~ 123 (223)
T 3dfz_A 93 FFIVVATNDQAVNKFVKQHIK-NDQLVNMASS 123 (223)
T ss_dssp SEEEECCCCTHHHHHHHHHSC-TTCEEEC---
T ss_pred CEEEECCCCHHHHHHHHHHHh-CCCEEEEeCC
Confidence 999998888888777777777 7877664444
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.20 E-value=3.7 Score=35.79 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.|+.+|--|+++|. .+..|++. ..+|+..|.+++.++...+.+.+.+ .++..+..|..+..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~---Ga~Vvi~~~~~~~~~~~~~~l~~~g-------~~~~~~~~Dv~~~~~v~~~~ 77 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA---GARVILNDIRATLLAESVDTLTRKG-------YDAHGVAFDVTDELAIEAAF 77 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT---TCEEEECCSCHHHHHHHHHHHHHTT-------CCEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCCHHHHHHHH
Confidence 46788888877764 33334443 3699999999999888877776643 47888888987521
Q ss_pred ----CCCCCccEEEECCCC
Q 022372 222 ----PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~ 236 (298)
...++.|+++.++..
T Consensus 78 ~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 78 SKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHCCCCcEEEECCCC
Confidence 123678999998864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=8.3 Score=34.47 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=52.9
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-CCCCCCCccE
Q 022372 153 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-~~~~~~~fD~ 229 (298)
.+|.-||+|. |. ++..+.+. |...+|++.|.+++.++.+++ .+. +.-...+..+ . ....|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~----~G~--------~~~~~~~~~~~~---~~~aDv 97 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGI--------IDEGTTSIAKVE---DFSPDF 97 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTS--------CSEEESCTTGGG---GGCCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHH----CCC--------cchhcCCHHHHh---hccCCE
Confidence 6899999876 43 44444444 332389999999988777653 221 1111222221 1 135799
Q ss_pred EEECCCCch---hHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAAPE---IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+..-+... +.+++...+++|..+ +.++.
T Consensus 98 Vilavp~~~~~~vl~~l~~~l~~~~iv-~d~~S 129 (314)
T 3ggo_A 98 VMLSSPVRTFREIAKKLSYILSEDATV-TDQGS 129 (314)
T ss_dssp EEECSCGGGHHHHHHHHHHHSCTTCEE-EECCS
T ss_pred EEEeCCHHHHHHHHHHHhhccCCCcEE-EECCC
Confidence 988776543 445666778887654 44443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 298 | ||||
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 3e-58 | |
| d1r18a_ | 223 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-52 | |
| d1jg1a_ | 215 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 6e-42 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 8e-34 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 9e-33 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 2e-24 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 7e-21 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 8e-17 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-13 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-12 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-09 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-08 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-08 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-07 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 5e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 2e-06 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-05 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 2e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 3e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 4e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 0.001 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.002 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.002 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.003 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 0.004 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.004 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (467), Expect = 3e-58
Identities = 114/228 (50%), Positives = 149/228 (65%), Gaps = 6/228 (2%)
Query: 73 WSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATI 132
W G + + ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATI
Sbjct: 1 WKSGGAS-HSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKC--NPYMDSPQSIGFQATI 57
Query: 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 192
SAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV S
Sbjct: 58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS 117
Query: 193 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGR 252
+ N+ K L G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR
Sbjct: 118 VNNVRKDDPTL-LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR 176
Query: 253 MVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 177 LILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 224
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 170 bits (430), Expect = 1e-52
Identities = 100/224 (44%), Positives = 136/224 (60%), Gaps = 11/224 (4%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G N N+ ++ L+ +GVI S V++ M+ DR + P PY+D+P IG T
Sbjct: 4 AWRSVGAN-NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVT 60
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-----RAVGVEHIP 186
ISAPHMHA L+ L ++LKPG LD+GSG+GYLTACF + +G R VG+EH
Sbjct: 61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA 120
Query: 187 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ 246
ELV S N+ + L G L + GDGRKG+P APY+AIHVGAAAP+ P LI+Q
Sbjct: 121 ELVRRSKANLNTDDRSML-DSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQ 179
Query: 247 LKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288
L GGR+++PVG Q ++ DK+ +G + + V YVPL
Sbjct: 180 LASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 142 bits (358), Expect = 6e-42
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 19/225 (8%)
Query: 78 VNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAP 135
K VE L+ G+I SK+V R V D ++D P+ I T+SAP
Sbjct: 5 YEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAP 64
Query: 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195
HM A L++ NLKPGM+ L++G+G+G+ A + +V +E IPELV + +N
Sbjct: 65 HMVAIMLEI--ANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRN 120
Query: 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255
+E+ ++ V +GDG KG+P APYD I V A AP+IP+ LI+QLK GG+++I
Sbjct: 121 LER------AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLII 174
Query: 256 PVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
PVG +++Q+L V K +DG + I + V +VPL GW
Sbjct: 175 PVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEY----GW 214
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 121 bits (303), Expect = 8e-34
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 94 ITSKKVSEVMETIDRACFVPDGTPP--YVDSPMAIGYNATISAPHMHATCLQLLEENLKP 151
I +++++E +DR+ F+P+ Y + A+ I+ ++ L E +L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHK 70
Query: 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211
G L+IG+G GY TA A +V + V VE ++ A+ L ++
Sbjct: 71 GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMY--------NYASKLLSYYNNIK 119
Query: 212 VHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVDKN 270
+ +GDG G+ E PYD + V A AP + +QLK GG M++P+G Q L V K
Sbjct: 120 LILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKK 179
Query: 271 QDGSLSIWSETSVRYVPLTSRDAQLRGW 298
+ S+ + V + + G+
Sbjct: 180 GNS-PSLENLGEVMFGRIGGLY----GF 202
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 118 bits (295), Expect = 9e-33
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 19/219 (8%)
Query: 82 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP---YVDSPMAI----GYNATISA 134
+ + L+ YGV S +++ I R F+ P Y D + +T S
Sbjct: 3 EKLFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQ 60
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
P + A ++ + + GM L+IG GTGY A + +VG +G V VE+ ++ + +
Sbjct: 61 PSLMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 254
N+E+ ++ GDG G PEF+PYD I V E+P+ QLK GGR++
Sbjct: 119 NVERLGIENVIF------VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVI 172
Query: 255 IPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSR 291
+P+ + + K +D L + R++
Sbjct: 173 VPINLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGN 211
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.3 bits (244), Expect = 2e-24
Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 14/180 (7%)
Query: 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 176
P D + + I+ P L ++ ++ PG L+ GSG+G ++ + VG Q
Sbjct: 66 PALEDYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQ 123
Query: 177 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKE-----GSLSVHVGDGRKG--WPEFAPYDA 229
GR + E + + +N + + L ++ D + +DA
Sbjct: 124 GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDA 183
Query: 230 IHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKVVD---KNQDGSLSIW-SETSVR 284
+ + P LK GG + V NI Q ++++D + SE VR
Sbjct: 184 VALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVR 243
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 87.3 bits (216), Expect = 7e-21
Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 17/205 (8%)
Query: 90 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 143
H G I V S V + V D M++ + P A +
Sbjct: 33 HRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLV--DYVMSMPRGPQVIYPKDAAQIVH 90
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
++ PG L+ G+G+G LT VGP G+ + E + + +N+ P
Sbjct: 91 EG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 262
+ + V D D + AP E+ A+ L GG +++ V + Q
Sbjct: 149 P---DNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ 205
Query: 263 DLKVVD--KNQDGSLSIWS-ETSVR 284
++V+ + + + ET R
Sbjct: 206 LSRIVEALRAKQCWTEPRAWETLQR 230
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 76.3 bits (187), Expect = 8e-17
Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 17/204 (8%)
Query: 90 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 143
H G+I +V + + + ++ P +D M + I P +
Sbjct: 40 HLGIIDLNEVFEKGPGEIIRTSAGKKGYI--LIPSLIDEIMNMKRRTQIVYPKDSSFIAM 97
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
+L ++K G +D G G+G + A A VG G+ E E + +S
Sbjct: 98 ML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA-----KLAESNLTK 150
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 263
+++ V D +G+ E + LK GGR Q
Sbjct: 151 WGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQV 210
Query: 264 LKVVDKNQDGSLS-IWS-ETSVRY 285
+ + K Q+ I E+ R
Sbjct: 211 QETLKKLQELPFIRIEVWESLFRP 234
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 66.2 bits (161), Expect = 2e-13
Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 16/212 (7%)
Query: 75 GSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISA 134
S + K K + H G+ + + + ++ V D +P Y + I +
Sbjct: 18 NSILVKGK-----MHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRN--TQIIS 70
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
+ + L+PGM L++G G+G +++ + +G VE + + ++
Sbjct: 71 EIDASYIIMRC--GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD 128
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 254
N+ + G++ D + I Q + +KPG
Sbjct: 129 NLSE-----FYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT 183
Query: 255 IPVGNIFQDLKVVDK-NQDGSLSIWS-ETSVR 284
+ N Q K V + G + + E R
Sbjct: 184 FYLPNFDQSEKTVLSLSASGMHHLETVELMKR 215
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 62.9 bits (152), Expect = 2e-12
Identities = 30/154 (19%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
+ L E A+D+G GTG +T A V ++ PE + ++ N+++
Sbjct: 26 MCLAE--PGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRHGL 80
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVG 258
++++ GD + + D VG + E+ + + D+LKPGGR+++
Sbjct: 81 GD-----NVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI 135
Query: 259 NIFQDLKVVD--KNQDGSLSIWSETSVRYVPLTS 290
+ + ++ ++ ++I R L
Sbjct: 136 LLETKFEAMECLRDLGFDVNITELNIARGRALDR 169
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 55.4 bits (132), Expect = 1e-09
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
+AT ++L +KPG LD+GSG+G + +A G G++ + +
Sbjct: 19 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKR 74
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 254
E+ + + + A A + + L LKPGG M+
Sbjct: 75 RAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 134
Query: 255 I 255
I
Sbjct: 135 I 135
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.8 bits (126), Expect = 1e-08
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194
P+ + Q LK G +D+GSG G AL G + G E + + +I
Sbjct: 202 PNFLSDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTIL 258
Query: 195 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA---------IHVGAAAPEIPQA--- 242
E+ L L+ +K + + ++ ++ +
Sbjct: 259 QYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEK 318
Query: 243 LIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVP 287
++ K G +++ ++ N + +
Sbjct: 319 ILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKE 363
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 51.1 bits (121), Expect = 3e-08
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195
H H+ L + + LDIG+G G+ F+ V +GV+ E+V +
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 57
Query: 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255
++ + + + + + A H + + + + LK GR ++
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 117
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 5e-07
Identities = 33/251 (13%), Positives = 63/251 (25%), Gaps = 42/251 (16%)
Query: 76 SGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAP 135
++M Y T + + + YN +++ P
Sbjct: 59 YDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDP 118
Query: 136 H----------------MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGR 178
Q+++E + +D+GSG G + A
Sbjct: 119 EKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKH 177
Query: 179 AVGVEHIPELVVSSIQNIE---KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 235
GVE + K K ++ GD + +
Sbjct: 178 HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVN 237
Query: 236 APEIPQALIDQ-------LKPGGRMVIP--------------VGNIFQDLKVVDKNQDGS 274
+ Q +K GGR+V + +I ++VV+ +
Sbjct: 238 NFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKG 297
Query: 275 LSIWSETSVRY 285
W+ V Y
Sbjct: 298 SVSWTGKPVSY 308
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 47.3 bits (111), Expect = 5e-07
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 143 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
+L++ LK LD+ +G G++ FA V + V + +++ + IE +
Sbjct: 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH 62
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255
+ + + + + A H LK GG++++
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 116
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.4 bits (109), Expect = 2e-06
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
+ +H +D G G GYL ++ + G++ L+ + + E
Sbjct: 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 83
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDL 264
G + + + + + Q +I +K GG+++ + ++
Sbjct: 84 GDATEIELNDKYDIAICH--AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 2/134 (1%)
Query: 137 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195
+ A + L+ +KPG L +G +G + + +VG +G+ G+E P ++ +
Sbjct: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI 117
Query: 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255
+E+ + + + D A I A LK GG +I
Sbjct: 118 VEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAE-VYLKRGGYGMI 176
Query: 256 PVGNIFQDLKVVDK 269
V + D+ +
Sbjct: 177 AVKSRSIDVTKEPE 190
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 148 NLKPGMHALDIGSGTGYLT-----ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202
+ K + L IG G G + A G VE E + + + K +
Sbjct: 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL 96
Query: 203 PLLKEGSLSVHVGDGRKGWPEFAP---YDAIHVGAAAPEIP------QALIDQLKPGGRM 253
+K + + E +D IH+ + + L +M
Sbjct: 97 ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM 156
Query: 254 VIPVGN 259
+I V +
Sbjct: 157 LIIVVS 162
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 19/155 (12%)
Query: 117 PPYVDSPMAIGYNATISAPH---MHATCLQLLEENL-KPGMHALDIGSGTGYLTACFALM 172
P + M A + A H + + L E L LDIG G GY T FA
Sbjct: 46 DPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA-- 103
Query: 173 VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232
+ +PE+ + + + A + ++ V + DAI
Sbjct: 104 ----------DALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR 153
Query: 233 GAAAPEIPQALIDQLKPGGRM--VIPVGNIFQDLK 265
AP + L +KPGG + P +LK
Sbjct: 154 -IYAPCKAEELARVVKPGGWVITATPGPRHLMELK 187
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (90), Expect = 2e-04
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 188
T H LEE LK LD+G GTG + + V V+ E+
Sbjct: 20 YETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLF---LQERGFEVVLVDPSKEM 76
Query: 189 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLK 248
+ + + K+ ++ A D + + + L
Sbjct: 77 LEVAREKGVKNVVEAKAED-----LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLV 131
Query: 249 PGGRMVIPVGNIFQDLK 265
P G ++ V N + L+
Sbjct: 132 PDGLLIATVDNFYTFLQ 148
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 8/124 (6%)
Query: 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196
MH ++ +PG + L++GS G T+ VE E + + +
Sbjct: 7 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRL 62
Query: 197 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256
+ + + + H+ + + D L GGR+ +
Sbjct: 63 KDGITYIHSRFEDAQLPRRYD----NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118
Query: 257 VGNI 260
N
Sbjct: 119 CPNA 122
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 15/120 (12%), Positives = 26/120 (21%), Gaps = 12/120 (10%)
Query: 148 NLKPGMHALDIGSGTGYLTACFA----LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203
N+ PG L G + + +VG + VE +
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKV 76
Query: 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVI 255
G + A + AA Q L + ++
Sbjct: 77 YAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 136
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
Query: 106 IDRACFVPDGTPPYVDS---PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGT 162
+ + G L+ L +L+PG LD+G+G+
Sbjct: 72 APPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGS 131
Query: 163 GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222
G L G+A+GV+ P ++ + N +++ P EGS + +
Sbjct: 132 GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS-----LEAALPFG 183
Query: 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255
F A + + L PGGR ++
Sbjct: 184 PFDLLVANLYAELHAALAPRYREALVPGGRALL 216
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 37.2 bits (85), Expect = 0.001
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAA 201
L+ K G LD+G G G + G+ + ++ + + + A
Sbjct: 16 CLIRLYTKRGDSVLDLGCGKGGDLLKYE--------RAGIGEYYGVDIAEVSINDARVRA 67
Query: 202 APLLKEGSLSVHVGDGRKGWPEFAPY 227
+ + + D +
Sbjct: 68 RNMKRRFKVFFRAQDSYGRHMDLGKE 93
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.6 bits (84), Expect = 0.002
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 16/126 (12%)
Query: 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198
A L+ L+ L +G+ +G + A +V +G VE+ + ++ +
Sbjct: 44 AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVR- 101
Query: 199 SAAAPLLKEGSLSVHVGDGRK-GWPEFAPYDAIHVGAAAPEIPQALI------DQLKPGG 251
+ ++ + D K + + Q I LK G
Sbjct: 102 -------ERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKG 154
Query: 252 RMVIPV 257
+VI V
Sbjct: 155 EVVIMV 160
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.5 bits (83), Expect = 0.002
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 20/128 (15%)
Query: 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLK 206
LD+ GTG + +G +V V+ +++ +++ P
Sbjct: 53 RQHGCHRVLDVACGTGVDSIMLV----EEGFSVTSVDASDKMLKYALKERWNRRKEPAFD 108
Query: 207 EGSLSVHVGDGRKGWPEFA--PYDAIHVGAAAPEIPQALIDQ-------------LKPGG 251
+ + I +G + +P + DQ ++PGG
Sbjct: 109 KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 168
Query: 252 RMVIPVGN 259
+VI N
Sbjct: 169 LLVIDHRN 176
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.2 bits (82), Expect = 0.003
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 1/143 (0%)
Query: 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 187
A + ++ EN LD+ GTG LT AV +
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEML 72
Query: 188 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQL 247
+ + ++ S + I + +A+ + L
Sbjct: 73 SEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132
Query: 248 KPGGRMVIPVGNIFQDLKVVDKN 270
K GG + + + ++ +V+ N
Sbjct: 133 KEGGVFIFDINSYYKLSQVLGNN 155
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 35.9 bits (81), Expect = 0.004
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPE 187
++ L E + + D+G G T + P + +G+++
Sbjct: 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP 76
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 35.3 bits (80), Expect = 0.004
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 19/117 (16%)
Query: 147 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 206
+ + PG LD+G G G + A + + ++ +
Sbjct: 27 KVVAPG-RTLDLGCGNGRNSLYLAAN----------GYDVTAWDKNPASMANLERIKAAE 75
Query: 207 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ--------LKPGGRMVI 255
YD I + I KPGG +I
Sbjct: 76 GLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 100.0 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 100.0 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 100.0 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 100.0 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 100.0 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.78 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.75 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.74 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.73 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.73 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.72 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.72 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.69 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.61 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.61 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.6 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.59 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.59 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.59 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.59 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.58 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.58 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.55 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.54 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.54 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.53 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.53 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.51 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.5 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.49 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.47 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.45 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.45 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.44 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.42 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.4 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.4 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.4 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.38 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.38 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.36 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.33 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.33 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.31 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.29 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.28 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.27 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.27 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.26 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.24 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.22 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.22 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.19 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.17 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.08 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.08 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.08 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.07 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.06 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.05 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.05 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.94 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.86 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.84 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.81 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.79 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.73 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.73 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.7 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.67 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.65 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.65 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.61 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.6 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.58 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.55 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.52 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.52 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.48 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.41 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.35 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.34 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.31 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.26 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.26 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.23 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.19 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.19 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.09 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.0 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.99 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.97 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.88 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.86 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.83 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.78 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.75 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.75 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.72 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.64 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.61 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.56 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.53 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.46 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.38 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.37 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.27 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.13 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.07 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.01 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.99 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.92 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.65 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.04 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.94 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.94 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.61 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.44 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.41 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.39 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.94 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.54 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 93.72 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.32 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.25 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.58 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.52 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.33 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.34 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 89.51 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.3 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 88.94 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.57 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 86.94 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.94 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 83.8 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 83.15 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 82.92 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 82.19 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.98 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.85 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.4 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 81.03 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 81.02 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.43 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.22 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 80.01 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-44 Score=318.34 Aligned_cols=222 Identities=52% Similarity=0.876 Sum_probs=204.6
Q ss_pred ccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCC
Q 022372 73 WSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPG 152 (298)
Q Consensus 73 ~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g 152 (298)
|++++ ++|++||++|++.|+++++++.+||++|||+.|+|+ .+|.|.++++++++++++|++++++++.|...+++|
T Consensus 1 ~~s~~-~~~~~mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~--~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g 77 (224)
T d1i1na_ 1 WKSGG-ASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKC--NPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG 77 (224)
T ss_dssp CCCCC-SSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSS--CTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTT
T ss_pred CCCCc-ccHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCc--ccCCCCCccccchhhhhhhHHHHHHHHHHhhccCCC
Confidence 77776 779999999999999999999999999999999996 589999999999999999999999999996568999
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
++|||||||+||.++.+|+++++.++|+++|+++++++.|++++++.+.. .+...++.++.+|+..++++.++||+|++
T Consensus 78 ~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~-~~~~~~~~~~~gD~~~~~~~~~~fD~I~~ 156 (224)
T d1i1na_ 78 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHV 156 (224)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-cccccceEEEEeecccccchhhhhhhhhh
Confidence 99999999999999999999988899999999999999999999876542 13347899999999998888789999999
Q ss_pred CCCCchhHHHHHhccccCcEEEEEECCC--ceeEEEEEEcCCCCeEEEEeeeEEEeecccchhhhcCC
Q 022372 233 GAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298 (298)
Q Consensus 233 ~~~~~~l~~~l~~~LkpGG~Lvi~v~~~--~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~~~~~ 298 (298)
+++.+++++.+.++|||||+||+|++.. .|.+..++|..++.+..+.+++|+|+||+...+++++|
T Consensus 157 ~~~~~~ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~~~~~~~~~ 224 (224)
T d1i1na_ 157 GAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 224 (224)
T ss_dssp CSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCCCC
T ss_pred hcchhhcCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEEEECCCCchhhccCC
Confidence 9999999999999999999999999864 47788899988889999999999999999999999999
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=3.3e-42 Score=302.42 Aligned_cols=215 Identities=46% Similarity=0.804 Sum_probs=194.2
Q ss_pred hhcccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccC
Q 022372 70 ERSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENL 149 (298)
Q Consensus 70 ~~~~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l 149 (298)
.|+|++++ ++|++||++|++.|+++++++.+||++|||+.|+|+ .+|.|.+++++.++++++|++++++++.|...+
T Consensus 2 ~~~~~s~~-~~~~~lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~--~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l 78 (223)
T d1r18a_ 2 HMAWRSVG-ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPR--NPYMDAPQPIGGGVTISAPHMHAFALEYLRDHL 78 (223)
T ss_dssp CCCCCCBC-SSHHHHHHHHHHTTSCCCHHHHHHHHTSCGGGTCSS--CTTBSSCEEEETTEEECCHHHHHHHHHHTTTTC
T ss_pred ccccccCC-cCHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHcCCc--cccCCCCccccCCceeehhhhHHHHHHHHhhcc
Confidence 47799987 789999999999998899999999999999999997 499999999999999999999999999995458
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~-----~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
+++++|||||||+||.|+.+++++++. .+|+++|+++++++.|++++...... ..+..|+.++.+|+..++++.
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-hcCccEEEEEecccccccccc
Confidence 999999999999999999999997643 38999999999999999987654321 123369999999999998888
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEEEECC--CceeEEEEEEcCCCCeEEEEeeeEEEeec
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN--IFQDLKVVDKNQDGSLSIWSETSVRYVPL 288 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~--~~q~~~~~~~~~~g~~~~~~l~~v~fvPl 288 (298)
++||+|+++++.+++++.+.++|||||+||+|++. ..|.+..++|..+|.|+.+.+++|+||||
T Consensus 158 ~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~FvPL 223 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223 (223)
T ss_dssp CSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred cceeeEEEEeechhchHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEEeecC
Confidence 89999999999999999999999999999999985 35788999999899999999999999998
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.2e-39 Score=281.57 Aligned_cols=202 Identities=41% Similarity=0.651 Sum_probs=187.3
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
+.+.+||++|++.|+++++++.+||+.|||+.|+|+. ..+|.|.+++++.++++++|++++++++.|. +++|++||
T Consensus 6 e~~~~lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VL 83 (215)
T d1jg1a_ 6 EKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNIL 83 (215)
T ss_dssp HHHHHHHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEE
Confidence 5688999999999999999999999999999999987 7889999999999999999999999999998 99999999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|||||+||.++.++++++ ++|+++|.++++++.|++++.+.+. .|+.++++|+..+++..++||+|+++++.
T Consensus 84 eIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~ 155 (215)
T d1jg1a_ 84 EVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVIIVTAGA 155 (215)
T ss_dssp EECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred EecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCC------ceeEEEECccccCCcccCcceeEEeeccc
Confidence 999999999999999975 5799999999999999999998654 79999999999999888999999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCC--ceeEEEEEEcCCCCeEEEEeeeEEEeecccc
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 291 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~--~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~ 291 (298)
+++++.+.++|||||+|++|++.. .|.+..++|..++ +..+.+++|+||||...
T Consensus 156 ~~ip~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~~~~-~~~~~l~~v~fvPl~g~ 211 (215)
T d1jg1a_ 156 PKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG-IKIKNHGGVAFVPLIGE 211 (215)
T ss_dssp SSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEETTE-EEEEEEEEECCCBCBST
T ss_pred ccCCHHHHHhcCCCCEEEEEEccCCccEEEEEEEEECCE-EEEEEEccEEEEcCCCc
Confidence 999999999999999999999865 3667777786554 99999999999999754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=3.5e-35 Score=257.34 Aligned_cols=184 Identities=29% Similarity=0.431 Sum_probs=166.9
Q ss_pred CCCHHHHHHHHhCCCCCCCCCC--CCCCCCC--CccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHH
Q 022372 94 ITSKKVSEVMETIDRACFVPDG--TPPYVDS--PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACF 169 (298)
Q Consensus 94 i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~--~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~L 169 (298)
|++.++.+||.+|||+.|+|+. ..+|.|. +++++.+.++++|++.+++++.|. +++|++|||||||+||+|+.|
T Consensus 11 I~~~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~L 88 (224)
T d1vbfa_ 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALI 88 (224)
T ss_dssp CCCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHH
T ss_pred CCCHHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHH
Confidence 6899999999999999999987 5678775 588899999999999999999998 999999999999999999999
Q ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCchhHHHHHhcccc
Q 022372 170 ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249 (298)
Q Consensus 170 a~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~Lkp 249 (298)
+++. ++|+++|+++++++.|++++.. ..|+.++.+|+..++++.++||+|+++++.+++++.+.++|||
T Consensus 89 a~l~---~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~ 157 (224)
T d1vbfa_ 89 AEIV---DKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKE 157 (224)
T ss_dssp HHHS---SEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEE
T ss_pred HHHh---cccccccccHHHHHHHHHHHhc--------ccccccccCchhhcchhhhhHHHHHhhcchhhhhHHHHHhcCC
Confidence 9986 6999999999999999988653 2699999999999888878999999999999999999999999
Q ss_pred CcEEEEEECCC-ceeEEEEEEcCCCCeEEEEeeeEEEeecccc
Q 022372 250 GGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 291 (298)
Q Consensus 250 GG~Lvi~v~~~-~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~ 291 (298)
||+||+|++.. .|.+..++|.++ .+..+.+++|+|+||...
T Consensus 158 GGrLV~pvg~~~~q~l~~i~k~~~-~~~~~~l~~v~F~pl~g~ 199 (224)
T d1vbfa_ 158 GGIMILPIGVGRVQKLYKVIKKGN-SPSLENLGEVMFGRIGGL 199 (224)
T ss_dssp EEEEEEEECSSSSEEEEEEECCTT-SCEEEEEEEECCCBCCST
T ss_pred CCEEEEEEcCCCceEEEEEEEECC-ceEEEEeeeEEEEECCCc
Confidence 99999999874 578888888654 589999999999999764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-34 Score=252.52 Aligned_cols=200 Identities=29% Similarity=0.467 Sum_probs=175.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC---CCCCCCCCccc----cCCCccChHHHHHHHHHHHHccCCCCC
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI----GYNATISAPHMHATCLQLLEENLKPGM 153 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~---~~aY~d~~~~~----g~~~~is~p~~~~~~l~~L~~~l~~g~ 153 (298)
|+.|++.|++.|+ + +++.+||..|||+.|+|+. ..+|.|.++.. ..+.++++|++++++++.+. +++|+
T Consensus 2 ~~~l~~~l~~~gi-~-~~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~ 77 (213)
T d1dl5a1 2 REKLFWILKKYGV-S-DHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGM 77 (213)
T ss_dssp HHHHHHHHHHTTC-C-HHHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTC
T ss_pred HHHHHHHHHHcCC-C-HHHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccc
Confidence 6789999999994 4 6999999999999999987 24677877654 44578999999999999998 99999
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEC
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVG 233 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~ 233 (298)
+|||+|||+|+.+..+++.+++.++|+++|+++++++.|+++++..+. .|+.++++|..+.++..++||+|+++
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~~d~~~~~~~~~~fD~I~~~ 151 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYDVIFVT 151 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------cccccccCchHHccccccchhhhhhh
Confidence 999999999999999999988889999999999999999999988654 78999999998888777899999999
Q ss_pred CCCchhHHHHHhccccCcEEEEEECCC---ceeEEEEEEcCCCCeEEEEeeeEEEeecccc
Q 022372 234 AAAPEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 291 (298)
Q Consensus 234 ~~~~~l~~~l~~~LkpGG~Lvi~v~~~---~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~ 291 (298)
.+.+++++++.++|||||+|++|++.. .+....+.+ .++.+..+.++.++|+||...
T Consensus 152 ~~~~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Fvpl~g~ 211 (213)
T d1dl5a1 152 VGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKK-KDPYLVGNYKLETRFITAGGN 211 (213)
T ss_dssp SBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEE-ETTEEEEEEEEECCCCBCCGG
T ss_pred ccHHHhHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEE-eCCeEEEEEEeeEEEEECCCC
Confidence 999999999999999999999999753 244445544 577899999999999999754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1.8e-19 Score=159.18 Aligned_cols=132 Identities=20% Similarity=0.282 Sum_probs=99.5
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
....++.++..|...+.++..+. ++||++|||+|||+|+++..||+.+++.++|+++|+++++++.|++|+++.+..
T Consensus 60 ~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~- 136 (250)
T d1yb2a1 60 RVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI- 136 (250)
T ss_dssp HHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-
T ss_pred hhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC-
Confidence 34456777888888899999887 999999999999999999999999888899999999999999999999876443
Q ss_pred ccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCCcee
Q 022372 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQD 263 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~~q~ 263 (298)
.|+++..+|..+..++ ++||+|+++.+-+ ...+.+.+.|||||++++.+++..|.
T Consensus 137 ----~nv~~~~~Di~~~~~~-~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv 192 (250)
T d1yb2a1 137 ----GNVRTSRSDIADFISD-QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 192 (250)
T ss_dssp ----TTEEEECSCTTTCCCS-CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHHH
T ss_pred ----CceEEEEeeeeccccc-ceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCcChH
Confidence 7999999999887655 7899999987664 46789999999999999988875443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=1.8e-18 Score=153.67 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=115.6
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
..+.+..++..|...+.++..+. ++||++|||+|||+|+++..||+.++|+++|+++|+++++++.|++|++....
T Consensus 71 ~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~-- 146 (264)
T d1i9ga_ 71 MSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-- 146 (264)
T ss_dssp TTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--
T ss_pred hhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--
Confidence 34566778888999999999998 99999999999999999999999999999999999999999999999987532
Q ss_pred ccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCCce
Q 022372 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
....|++++++|..+...+.++||+|+++.+-+ ...+++.+.|||||++++.+++..|
T Consensus 147 -~~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q 205 (264)
T d1i9ga_ 147 -QPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ 205 (264)
T ss_dssp -SCCTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred -CCCceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccCh
Confidence 123799999999987655568999999987665 4678999999999999998887544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=2.4e-18 Score=149.46 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
++....+++.+. ++||++|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+. +++.+++
T Consensus 2 ~~~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~ 70 (234)
T d1xxla_ 2 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV------ENVRFQQ 70 (234)
T ss_dssp HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEE
T ss_pred chHHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccc------ccccccc
Confidence 355667788887 9999999999999999999999975 5899999999999999999988654 6899999
Q ss_pred cCCCCCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEE
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~ 256 (298)
+|..+...+.++||+|++..+++++ .+++.+.|||||++++.
T Consensus 71 ~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 71 GTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp CBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence 9998866566899999999998654 47889999999999885
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.74 E-value=4.7e-18 Score=146.49 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=94.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+++++.+. ++++++|||||||+|.++..+++.. .+|+|+|+++++++.|++++...+. ++++++++|.
T Consensus 4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~ 72 (231)
T d1vl5a_ 4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA 72 (231)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccc------cccccccccc
Confidence 567788887 9999999999999999999999874 5899999999999999999887554 7999999999
Q ss_pred CCCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~ 256 (298)
.+...+.++||+|++..+++++ .+++.+.|||||++++.
T Consensus 73 ~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 73 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp -CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8866566899999999998765 47899999999999984
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=2.4e-18 Score=153.35 Aligned_cols=130 Identities=24% Similarity=0.346 Sum_probs=112.3
Q ss_pred cccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCc
Q 022372 125 AIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204 (298)
Q Consensus 125 ~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~ 204 (298)
.+.++.++..|...+.++..+. ++||++|||+|||+|+++..+|+.+++.++|+++|+++++++.|++++++.++.
T Consensus 79 ~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-- 154 (266)
T d1o54a_ 79 NMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-- 154 (266)
T ss_dssp TCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG--
T ss_pred hccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc--
Confidence 3445667888888999999998 999999999999999999999999888899999999999999999999987764
Q ss_pred cCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCCce
Q 022372 205 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 205 l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
.++.+..+|....+.. ..||.|+.+.+-+ ++.+++.+.|||||++++.++...|
T Consensus 155 ---~~v~~~~~d~~~~~~~-~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Q 209 (266)
T d1o54a_ 155 ---ERVTIKVRDISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQ 209 (266)
T ss_dssp ---GGEEEECCCGGGCCSC-CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHHH
T ss_pred ---cCcEEEeccccccccc-cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCcccH
Confidence 6889999987665544 6899999987765 5779999999999999998876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.3e-17 Score=145.91 Aligned_cols=113 Identities=24% Similarity=0.274 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+.....+.+.+. ++||++|||||||+|..+..+++..+ .+|+|+|+|+.+++.|+++....++. ++++++.
T Consensus 19 ~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~-----~~v~~~~ 89 (245)
T d1nkva_ 19 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVS-----ERVHFIH 89 (245)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEE
T ss_pred HHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhcc-----ccchhhh
Confidence 445666777776 99999999999999999999998753 69999999999999999999887764 6899999
Q ss_pred cCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
+|..+..+ .++||+|++..++.+ +.+++.+.|||||++++..
T Consensus 90 ~d~~~~~~-~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 90 NDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp SCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHHhhccc-cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence 99988654 489999999887754 4478999999999999954
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.72 E-value=1.2e-17 Score=140.56 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=100.8
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+++.++...++..+. +++|++|||+|||+|+++..+|+.. .+|+++|+++++++.|++|++++++. ++++
T Consensus 16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~-----~~v~ 85 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG-----DNVT 85 (186)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC-----TTEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCC-----cceE
Confidence 455677788888886 8999999999999999999998764 59999999999999999999998765 6999
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEEC
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++++|..+.+.+...||.|+++.... ++.+.+.+.|||||++++...
T Consensus 86 ~~~gda~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 86 LMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECchhhcccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence 99999877666667899999998865 455788899999999998764
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.6e-17 Score=149.33 Aligned_cols=140 Identities=21% Similarity=0.250 Sum_probs=113.5
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhc
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~ 200 (298)
|....+.++.++..|...+.++..+. ++||++|||+|||+|+++..||+.++++++|+++|+++++++.|++|+++.+
T Consensus 70 d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~ 147 (324)
T d2b25a1 70 DYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147 (324)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 33345567788889999999999998 9999999999999999999999999999999999999999999999998754
Q ss_pred cCC-----ccCCCCEEEEEcCCCCCCC--CCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCCce
Q 022372 201 AAP-----LLKEGSLSVHVGDGRKGWP--EFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 201 ~~~-----~l~~~~v~~~~gD~~~~~~--~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
... .-...|+++.++|...... ....||+|+.+.+-+ ...+++.+.|||||+|++.+++-.|
T Consensus 148 ~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Q 217 (324)
T d2b25a1 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQ 217 (324)
T ss_dssp HHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHHH
T ss_pred hhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 210 0113689999999876432 236899999987665 4778999999999999998887544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.3e-17 Score=147.41 Aligned_cols=123 Identities=26% Similarity=0.486 Sum_probs=95.7
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
..|..+.+|.|.|.+ ...+++.+....++|++|||+|||+|.++..+++. + .+|+|+|+++.+++.|++|.+.
T Consensus 92 ~i~pg~aFGTG~H~T----T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~ 164 (254)
T d2nxca1 92 VIEPGMAFGTGHHET----TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKR 164 (254)
T ss_dssp ECCCC-----CCSHH----HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHH
T ss_pred EEccccccCccccch----hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHH
Confidence 345677889998864 56677777767899999999999999999988876 4 5899999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
++. ++++.++|.....+ .++||+|+++...+ ++.+.+.+.|||||+++++
T Consensus 165 n~~-------~~~~~~~d~~~~~~-~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 165 NGV-------RPRFLEGSLEAALP-FGPFDLLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp TTC-------CCEEEESCHHHHGG-GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC-------ceeEEecccccccc-ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 764 45788888765443 37899999986554 4557889999999999984
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=8.6e-17 Score=137.31 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=90.7
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+...+..+++++.+|||||||+|.++..+++.. .+|+|+|+|+++++.|+++....+ .++.++.+|..+.
T Consensus 27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~-------~~~~~~~~d~~~l 96 (226)
T d1ve3a1 27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDARKL 96 (226)
T ss_dssp HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCTTSC
T ss_pred HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhcccc-------ccccccccccccc
Confidence 334444467888999999999999999999863 689999999999999999887644 3578889999887
Q ss_pred CCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+.++||+|++..+++++ .+++.++|||||++++.+.+
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 6666899999999998754 36788999999999987764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.68 E-value=1.2e-16 Score=142.46 Aligned_cols=102 Identities=23% Similarity=0.156 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||||||+|..+..|++..+ .+|+|+|+++.+++.|+++....++. ++++++.+|..+...+.++||
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~-----~~v~~~~~d~~~l~~~~~sfD 137 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLA-----DNITVKYGSFLEIPCEDNSYD 137 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCT-----TTEEEEECCTTSCSSCTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccccccc-----ccccccccccccccccccccc
Confidence 78899999999999999999998754 58999999999999999999887765 689999999988765668999
Q ss_pred EEEECCCCchh------HHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPEI------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v 257 (298)
+|++..+++++ .+++.+.|||||++++..
T Consensus 138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999988654 478899999999999853
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=2.2e-15 Score=129.81 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=90.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+...+..+++++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.|+++++..+.. .++.+..+|
T Consensus 26 ~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~-----~~~~~~~~d 100 (225)
T d1im8a_ 26 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCND 100 (225)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS-----SCEEEECSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc-----chhhhccch
Confidence 4444455555688999999999999999999998653 5579999999999999999998775543 678888888
Q ss_pred CCCCCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
..... .+.+|+|++...+++ +.+++++.|||||.+++.
T Consensus 101 ~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 101 IRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp TTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence 76543 257899999887643 458899999999999985
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.61 E-value=3.1e-15 Score=126.36 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=91.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|+++..+++.. .+|+++|+++.+++.|+++++.++. ...++++..+|..
T Consensus 42 ~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l----~~~~i~~~~~d~~ 112 (194)
T d1dusa_ 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNL----DNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC----TTSCEEEEECSTT
T ss_pred HHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCC----ccceEEEEEcchh
Confidence 44566665 7789999999999999999999874 5899999999999999999988764 2357999999998
Q ss_pred CCCCCCCCccEEEECCCCc-------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.++ .++||+|+++.+.+ .+.+.+.+.|||||++++.+..
T Consensus 113 ~~~~-~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 113 ENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhc-cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 7544 47999999998864 3456778999999999886654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.60 E-value=2.7e-15 Score=130.65 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=88.0
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+.+.+.....++.+|||+|||+|..+..+++.. .+|+|+|.|++|++.|+++....+ .+++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~-------~~v~~~~~d 92 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccC-------ccceeeccc
Confidence 3444555555444556899999999999999999984 589999999999999999887644 478999999
Q ss_pred CCCCCCCCCCccEEEECC-CCc---------hhHHHHHhccccCcEEEEEECC
Q 022372 217 GRKGWPEFAPYDAIHVGA-AAP---------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~-~~~---------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+...+ ++||+|++.. ++. .+.+++.+.|||||.+++.+.+
T Consensus 93 ~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 9876544 6899999853 322 2457899999999999986643
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=5e-15 Score=125.08 Aligned_cols=105 Identities=18% Similarity=0.144 Sum_probs=86.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
++..+. .+++ .+|||+|||+|+.+..+++.. .+|+|+|+++.+++.++++....+. +++.+..+|....
T Consensus 22 ~~~~~~-~~~~-grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~ 90 (198)
T d2i6ga1 22 VLAAAK-VVAP-GRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTL 90 (198)
T ss_dssp HHHHHT-TSCS-CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTC
T ss_pred HHHHcc-cCCC-CcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccc------cchhhhheecccc
Confidence 344443 2444 599999999999999999984 5899999999999999999887654 6899999998876
Q ss_pred CCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
.++ ++||+|++..+++++ .+++.+.|||||++++..
T Consensus 91 ~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 91 TFD-GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp CCC-CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccc-ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 654 789999999987654 367888999999999854
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.59 E-value=3.2e-15 Score=131.05 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=86.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~ 226 (298)
..+++.+|||+|||+|..+..+++. +. .+|+|+|+|+++++.|+++....+.. .++.+.++|...... ..++
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~-~~-~~v~GiD~S~~~l~~A~~r~~~~~~~-----~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERA-GI-GEYYGVDIAEVSINDARVRARNMKRR-----FKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHH-TC-SEEEEEESCHHHHHHHHHHHHTSCCS-----SEEEEEESCTTTSCCCCSSC
T ss_pred hCCCcCEEEEecccCcHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHhcCCC-----cceEEEEcchhhhccccccc
Confidence 4789999999999999999999886 33 58999999999999999988765432 579999999875443 3468
Q ss_pred ccEEEECCCCchh----------HHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l----------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
||+|++..+++++ .+++.+.|||||++++.+++
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9999999988654 36688999999999998765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=3.9e-15 Score=129.42 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=83.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.+++.+|||+|||+|..+..|++.. .+|+|+|+|++|++.|++++...+ .++++.++|+.+...+ ++||
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~-------~~i~~~~~d~~~l~~~-~~fD 107 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERN-------LKIEFLQGDVLEIAFK-NEFD 107 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEESCGGGCCCC-SCEE
T ss_pred CCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccccc-------ccchheehhhhhcccc-cccc
Confidence 5567799999999999999999973 589999999999999999987744 3789999999876555 6899
Q ss_pred EEEECC-CCc--------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGA-AAP--------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~-~~~--------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++.. ++. ...+++.+.|||||++++.+.+
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999864 332 2447889999999999997654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=7e-15 Score=132.17 Aligned_cols=109 Identities=19% Similarity=0.201 Sum_probs=92.0
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+++.+. +++|++|||||||.|.++..+|+..+ .+|+|+++|++.++.|+++....++. .++++...|
T Consensus 49 k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~-----~~v~~~~~d 119 (291)
T d1kpia_ 49 KRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSP-----RRKEVRIQG 119 (291)
T ss_dssp HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCS-----SCEEEEECC
T ss_pred HHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccc-----hhhhhhhhc
Confidence 4555667675 89999999999999999999998865 69999999999999999999887764 678888887
Q ss_pred CCCCCCCCCCccEEEECCCCchh---------------HHHHHhccccCcEEEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEI---------------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l---------------~~~l~~~LkpGG~Lvi~v 257 (298)
... ..++||.|++...++|+ ++.+.++|||||++++..
T Consensus 120 ~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 120 WEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp GGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 642 23789999999998764 467899999999999854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=3.3e-15 Score=132.57 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|+.+..+++.. ++.+++|+|+++.+++.|+++. +++.+.++|..+...+.++||
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD 149 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMD 149 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEE
Confidence 4567899999999999999999984 6689999999999999998753 578999999988776778999
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|++..+.++ .+++.+.|||||++++.+++.
T Consensus 150 ~v~~~~~~~~-~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 150 AIIRIYAPCK-AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEESCCCC-HHHHHHHEEEEEEEEEEEECT
T ss_pred EEeecCCHHH-HHHHHHHhCCCcEEEEEeeCC
Confidence 9999888766 478999999999999988653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=5e-15 Score=132.47 Aligned_cols=109 Identities=22% Similarity=0.184 Sum_probs=90.4
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+++.+. +++|++|||||||+|.++..+++..+ .+|+|+|+|++.++.|++++.+.++. .++.+...|
T Consensus 40 k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~-----~~~~~~~~d 110 (280)
T d2fk8a1 40 KVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTN-----RSRQVLLQG 110 (280)
T ss_dssp HHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESC
T ss_pred HHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccc-----cchhhhhhh
Confidence 3455566665 88999999999999999999998864 69999999999999999999887764 578888777
Q ss_pred CCCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
..+. .++||.|++...++++ ++.+.+.|||||++++..
T Consensus 111 ~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 111 WEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 6543 2689999999998665 477899999999999853
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=3.9e-15 Score=128.43 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=81.0
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
..+..+++++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|+++.. ..++.+|+.+...
T Consensus 34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~~------------~~~~~~~~~~l~~ 98 (246)
T d2avna1 34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGV------------KNVVEAKAEDLPF 98 (246)
T ss_dssp HHHHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTC------------SCEEECCTTSCCS
T ss_pred HHHHHhcCCCCEEEEECCCCchhcccccccc---eEEEEeecccccccccccccc------------ccccccccccccc
Confidence 3344457788999999999999999999873 699999999999999987631 1356788877655
Q ss_pred CCCCccEEEECC-CCch------hHHHHHhccccCcEEEEEECC
Q 022372 223 EFAPYDAIHVGA-AAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 ~~~~fD~Ii~~~-~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.++||+|++.. ++++ +.+++.+.|||||.+++.+++
T Consensus 99 ~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 99 PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 568999999865 4443 347889999999999998754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=7.3e-15 Score=131.13 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.|+++....+ .++++..+|..+...+ ++||
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-------~~~~f~~~d~~~~~~~-~~fD 96 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEGDATEIELN-DKYD 96 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-------SEEEEEESCTTTCCCS-SCEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-------cccccccccccccccc-CCce
Confidence 5677899999999999999999987656799999999999999999987643 3789999998875444 6899
Q ss_pred EEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++..+++++ .+++.+.|||||.+++..+.
T Consensus 97 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 97 IAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999998764 47899999999999987654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=1.6e-14 Score=129.49 Aligned_cols=108 Identities=22% Similarity=0.139 Sum_probs=92.0
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
....+++.+. +++|++|||||||.|.++..+|+..| .+|+|+++|++.++.|+++..+.+.. +++++..+|
T Consensus 50 k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~-----~~v~~~~~d 120 (285)
T d1kpga_ 50 KIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENL-----RSKRVLLAG 120 (285)
T ss_dssp HHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCC-----SCEEEEESC
T ss_pred HHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhh-----hhhHHHHhh
Confidence 3455666665 89999999999999999999999875 69999999999999999999887765 799999999
Q ss_pred CCCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEE
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 256 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~ 256 (298)
..+. .++||.|++...++++ ++++.++|||||++++.
T Consensus 121 ~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 121 WEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp GGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 7654 2689999999988765 47788999999999973
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.5e-14 Score=127.32 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=107.0
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
|....+.++.+..+++|.....+-..+....+.+.+|||+|||+|..+..++... |+.+|+++|+|+.+++.|++|+..
T Consensus 76 F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~ 154 (274)
T d2b3ta1 76 FWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQH 154 (274)
T ss_dssp ETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHH
T ss_pred EeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHH
Confidence 4455577788888988886655444444334566799999999999999999985 678999999999999999999998
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-------------------------------hhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-------------------------------~l~~~l~~~L 247 (298)
++. .+++++++|.....+. .+||+|+++++.- .+.+.+.+.|
T Consensus 155 ~~~------~~v~~~~~d~~~~~~~-~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L 227 (274)
T d2b3ta1 155 LAI------KNIHILQSDWFSALAG-QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 227 (274)
T ss_dssp HTC------CSEEEECCSTTGGGTT-CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred hCc------ccceeeecccccccCC-CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhc
Confidence 765 5899999998876554 6899999998741 1235567889
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||.+++-++..
T Consensus 228 ~~~G~l~lEig~~ 240 (274)
T d2b3ta1 228 VSGGFLLLEHGWQ 240 (274)
T ss_dssp EEEEEEEEECCSS
T ss_pred CCCCEEEEEECch
Confidence 9999999988753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.54 E-value=6.9e-15 Score=126.76 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=85.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+.... ++.+|||||||+|.++..+++.. .+|+|+|+++++++.|+++.. .++.++.++..
T Consensus 9 ~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~ 74 (225)
T d2p7ia1 9 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK----------DGITYIHSRFE 74 (225)
T ss_dssp HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC----------SCEEEEESCGG
T ss_pred HHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc----------ccccccccccc
Confidence 44555554344 45689999999999999998873 579999999999999987642 47899999887
Q ss_pred CCCCCCCCccEEEECCCCchhH------HHHH-hccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIP------QALI-DQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~------~~l~-~~LkpGG~Lvi~v~~ 259 (298)
+..++ ++||+|++..+++++. .++. ++|||||.+++.+++
T Consensus 75 ~~~~~-~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 75 DAQLP-RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp GCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccc-cccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 65554 7899999999997654 5666 689999999998865
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.53 E-value=5.3e-15 Score=123.05 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC------CccCCC
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLKEG 208 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~------~~l~~~ 208 (298)
|++.. ....|. ++||.+|||+|||+|+.+..||+.. .+|+|+|+|+.+++.|+++.+..... ......
T Consensus 7 ~~~~~-~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T d1pjza_ 7 KDLQQ-YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP 80 (201)
T ss_dssp HHHHH-HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred HHHHH-HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence 44444 345565 8899999999999999999999984 79999999999999999987543221 001124
Q ss_pred CEEEEEcCCCCCCCC-CCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 209 SLSVHVGDGRKGWPE-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~-~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
++++..+|..+..+. ...||+|++...+.++ .+.+.+.|||||++++..
T Consensus 81 ~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 81 GIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp SSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 567888888765432 2579999998887644 367889999999988754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.7e-15 Score=127.47 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|..+..+++..+ .+|+|+|+|+++++.|++++...+. .+++++++|..+..++.++||
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~------~~~~f~~~d~~~~~~~~~~fD 129 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFTPEPDSYD 129 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCCCCSSCEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccc------ccccccccccccccccccccc
Confidence 45678999999999999998875532 5899999999999999999876543 578999999988666668999
Q ss_pred EEEECCCCchh--------HHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|++..+++++ .+++.+.|||||.+++...
T Consensus 130 ~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 130 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 99999988654 3678899999999998643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.51 E-value=6.3e-14 Score=120.01 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=82.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---C
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---F 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~ 224 (298)
.++||++|||+|||+|+.+..+++.+ ++++|+|+|+++.+++.|+++.+.. +|+.++.+|....... .
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~--------~ni~~i~~d~~~~~~~~~~~ 123 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASKPWKYSGIV 123 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTCGGGTTTTC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhcc--------CCceEEEeeccCcccccccc
Confidence 48899999999999999999999997 4579999999999999999987663 6899999998764222 2
Q ss_pred CCccEEEECCCCch----hHHHHHhccccCcEEEEEE
Q 022372 225 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v 257 (298)
..+|+|+.+..... +.+++.+.|||||++++..
T Consensus 124 ~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 124 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 35777777655433 4578889999999999865
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=7.6e-14 Score=120.98 Aligned_cols=113 Identities=25% Similarity=0.355 Sum_probs=89.4
Q ss_pred HHHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
+.+.++.-+.. .++||++|||+|||+|+.+..+++.+|++++|+|+|+++.+++.++++.+.. +++..+..
T Consensus 58 laa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--------~~~~~i~~ 129 (227)
T d1g8aa_ 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPILG 129 (227)
T ss_dssp HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEEEC
T ss_pred HHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--------CCceEEEE
Confidence 34444433321 4789999999999999999999999999999999999999999999886542 57788888
Q ss_pred CCCCCC---CCCCCccEEEECCCCch----hHHHHHhccccCcEEEEEE
Q 022372 216 DGRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 216 D~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v 257 (298)
|..... .....+|+|+.+...+. +.+++.+.|||||++++.+
T Consensus 130 d~~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 130 DATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEE
Confidence 876421 22367999999876643 4578889999999999865
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.49 E-value=3.5e-14 Score=125.00 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=85.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+++.+. ..++.+|||+|||+|..+..++.... .+|+++|.++.+++.|++++... +++++.++|..+.
T Consensus 85 fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~--------~~~~~~~~d~~~~ 152 (254)
T d1xtpa_ 85 FIASLP--GHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASMETA 152 (254)
T ss_dssp HHHTST--TCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGGGC
T ss_pred HHhhCC--CCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc--------ccceeEEcccccc
Confidence 444443 45678999999999999998876643 48999999999999999876431 5689999998876
Q ss_pred CCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~ 258 (298)
.++.++||+|++..+++++ .+++.+.|||||.+++...
T Consensus 153 ~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 6666899999999998765 3678899999999999543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.2e-14 Score=121.04 Aligned_cols=118 Identities=16% Similarity=0.041 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-----------C
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-----------P 203 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-----------~ 203 (298)
|.+...+.+.+. ++++.+|||+|||+|+.+..||+.. .+|+|+|+|+.+++.|+++....... .
T Consensus 31 ~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 31 QLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp HHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred HHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhccccccee
Confidence 455555556665 7888999999999999999999974 69999999999999999876532110 0
Q ss_pred ccCCCCEEEEEcCCCCCC-CCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 204 LLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~~-~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
.....++++.++|..... ...+.||+|+....++++ .+++.+.|||||++++..
T Consensus 106 ~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp EETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 011257899999987643 344789999998887543 368899999999987754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.45 E-value=2.1e-13 Score=119.57 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=89.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. +.+..+|||||||+|..+..+++.. |+.+++++|+ +++++.+++++...+.. ++++++.+|..
T Consensus 70 ~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~rv~~~~~D~~ 140 (253)
T d1tw3a2 70 DAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS-----DRVDVVEGDFF 140 (253)
T ss_dssp HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT-----TTEEEEECCTT
T ss_pred HHHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcc-----cchhhccccch
Confidence 34456665 6777899999999999999999995 7789999998 67899999999887654 78999999987
Q ss_pred CCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
+..+ .+||+|++...++++ .+++.+.|||||++++.-
T Consensus 141 ~~~~--~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 141 EPLP--RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp SCCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcc--cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 6543 479999999988643 477899999999999843
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=8.7e-14 Score=117.68 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||||||+|.++..++ +++|+|+|+.+++.|+++ ++.++++|..+.....++||
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD 93 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFD 93 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEE
T ss_pred hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------------cccccccccccccccccccc
Confidence 4566799999999998866552 468999999999998753 57899999987766668999
Q ss_pred EEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++..+++++ .+++.+.|||||++++...+
T Consensus 94 ~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 94 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccccccccccchhhhhhcCCCCceEEEEecC
Confidence 99999998765 37889999999999997764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.44 E-value=2.9e-13 Score=115.40 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~f 227 (298)
.++..|||||||+|..+..+|+. .|+..++|+|+++.+++.|.++..+.++ .|+.++.+|+.... .+.+++
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~~~~ 100 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEV 100 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSC
T ss_pred CCCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCchhh
Confidence 34568999999999999999999 5888999999999999999999988665 69999999987532 344789
Q ss_pred cEEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|++..+.+ .+.+.+.+.|||||.|++....
T Consensus 101 d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 101 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred hccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 9998887653 3568899999999999986543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=2.6e-13 Score=117.75 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=78.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~ 226 (298)
.++||++|||+|||+|+.+..+++. .+++.|+|+|+++.+++.++++.... +++..+.+|...... ....
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~-~~~g~V~aVDiS~~~i~~a~~~a~~~--------~ni~~i~~d~~~~~~~~~~~ 141 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAER--------ENIIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTTCGGGGTTTC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhhh--------cccceEEEeeccCccccccc
Confidence 3789999999999999999999998 47789999999999999998876442 688888888876432 2234
Q ss_pred ccEEEECCCC------chhHHHHHhccccCcEEEEEE
Q 022372 227 YDAIHVGAAA------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 227 fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+|++++.... +.+..++.+.|||||++++..
T Consensus 142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 5554433333 234578899999999999865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2e-13 Score=117.99 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~~~ 226 (298)
..+|.+|||||||+|+.+..+++.. + .+|+++|+++.+++.|+++..... .++.++.+++.. ...+.++
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~-~-~~v~~id~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 121 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDVAPTLPDGH 121 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC-E-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHHGGGSCTTC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcC-C-CeEEEeCCCHHHHHHHHHHhhhcc-------ccccccccccccccccccccc
Confidence 4678899999999999999999863 3 589999999999999999876543 467777776543 2233478
Q ss_pred ccEEEECCCC-----ch------hHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAA-----PE------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~-----~~------l~~~l~~~LkpGG~Lvi 255 (298)
||.|+.+... .+ ..+++.++|||||++++
T Consensus 122 fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 9999876543 22 34678899999999987
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=4.4e-13 Score=119.63 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=82.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+. .+++.+|||+|||+|..+..|++. | .+|+|+|+|++|++.|+++....+.. ....+..+...+.
T Consensus 45 ~~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~-g--~~v~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~~~~~~ 117 (292)
T d1xvaa_ 45 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANW 117 (292)
T ss_dssp HHHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCG
T ss_pred HHHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHc-C--CeeeeccCchHHHHHHHHHHHhcccc--cccceeeeeeccc
Confidence 344566665 556789999999999999999987 3 58999999999999999988765432 1112334444444
Q ss_pred CC---CCCCCCCccEEEECC-CCch-------------hHHHHHhccccCcEEEEEEC
Q 022372 218 RK---GWPEFAPYDAIHVGA-AAPE-------------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~---~~~~~~~fD~Ii~~~-~~~~-------------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.. ..+..++||.|++.. ++.+ +.+++.+.|||||+|++.+.
T Consensus 118 ~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 32 123346899998764 3332 46889999999999999664
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=3.8e-13 Score=115.46 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEc
Q 022372 81 NKAMVEHLQHYGVITSK-KVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIG 159 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~-~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG 159 (298)
.+++.+.+.++..=.+| .+++++.+-.++. +.++.++ |. .++++..+....+ ..+|||+|
T Consensus 4 ~~~~~~yv~~~~~~~~p~~vl~~~~~~~~~~----------~~~m~i~-------~~-~G~lL~~lv~~~k-pk~ILEiG 64 (214)
T d2cl5a1 4 EQRILRYVQQNAKPGDPQSVLEAIDTYCTQK----------EWAMNVG-------DA-KGQIMDAVIREYS-PSLVLELG 64 (214)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT----------CCCCSCH-------HH-HHHHHHHHHHHHC-CSEEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc----------CCccccC-------HH-HHHHHHHHHHhhC-CCEEEEEc
Confidence 45677777766532344 5777777643322 1223343 22 4556666543333 47999999
Q ss_pred CCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------CCCCccEEEEC
Q 022372 160 SGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------EFAPYDAIHVG 233 (298)
Q Consensus 160 ~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------~~~~fD~Ii~~ 233 (298)
||+|+.+..+++.++++++|+++|.++++.+.|++++...++. ++++++.||..+..+ ..++||+|+++
T Consensus 65 t~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-----~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD 139 (214)
T d2cl5a1 65 AYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-----DKVTILNGASQDLIPQLKKKYDVDTLDMVFLD 139 (214)
T ss_dssp CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEESCHHHHGGGHHHHSCCCCEEEEEEC
T ss_pred cCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-----ccceeeeccccccccchhhcccccccceeeec
Confidence 9999999999998877789999999999999999999998875 689999999875322 23579999999
Q ss_pred CCCchhH-----HHHHhccccCcEEEE
Q 022372 234 AAAPEIP-----QALIDQLKPGGRMVI 255 (298)
Q Consensus 234 ~~~~~l~-----~~l~~~LkpGG~Lvi 255 (298)
....... .+..+.|||||++++
T Consensus 140 ~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 140 HWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccccccHHHHHHHhCccCCCcEEEE
Confidence 8765433 345678999998775
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.38 E-value=3.6e-12 Score=108.48 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCcc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~fD 228 (298)
.+..|||||||+|..+..+|+.. |+..++|+|+++.++..|.+++.+.++ +|+.++.+|+.... .+..++|
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~~~~~~ 103 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEID 103 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCS
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhccCCcee
Confidence 44589999999999999999994 778999999999999999999988665 69999999987632 3447899
Q ss_pred EEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|++..+-+ .+.+.+.+.|||||.+.+....
T Consensus 104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 999887642 4568899999999999986543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-12 Score=112.68 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=110.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcC
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGS 160 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~ 160 (298)
.+.+.+.+..+.. ..+.+.+.++.-.... +.+.....|. .++++..|.. .....+|||+||
T Consensus 8 ~~~l~~Y~~~~~~-~~~~~l~~l~~~t~~~----------------~~~~~~i~~~-~g~lL~~L~~-~~~~k~vLEiGt 68 (219)
T d2avda1 8 DSRLWQYLLSRSM-REHPALRSLRLLTLEQ----------------PQGDSMMTCE-QAQLLANLAR-LIQAKKALDLGT 68 (219)
T ss_dssp TSHHHHHHHHTTC-CCCHHHHHHHHHHHTS----------------TTGGGSCCHH-HHHHHHHHHH-HTTCCEEEEECC
T ss_pred cHHHHHHHHHhCC-CCCHHHHHHHHHHHhC----------------CCCCcccCHH-HHHHHHHHHH-ccCCCeEEEEec
Confidence 3456666777653 4555555554422211 0011122243 4666666652 445689999999
Q ss_pred CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------CCCCCccEEEECC
Q 022372 161 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------PEFAPYDAIHVGA 234 (298)
Q Consensus 161 GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------~~~~~fD~Ii~~~ 234 (298)
|+||.+.++|+.++++++++++|.+++..+.|++++.+.+.. ++++++.||+.+.. ...++||.|+.+.
T Consensus 69 ~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-----~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~ 143 (219)
T d2avda1 69 FTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-----HKIDLRLKPALETLDELLAAGEAGTFDVAVVDA 143 (219)
T ss_dssp TTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-----TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred hhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-----ceEEEEEeehhhcchhhhhhcccCCccEEEEeC
Confidence 999999999998877899999999999999999999998775 78999999976532 1236899999999
Q ss_pred CCchhH---HHHHhccccCcEEEE
Q 022372 235 AAPEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 235 ~~~~l~---~~l~~~LkpGG~Lvi 255 (298)
..+... +.+.+.|+|||.+++
T Consensus 144 dk~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 144 DKENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp CSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCcEEEE
Confidence 887654 678899999999997
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=2.4e-12 Score=113.55 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=87.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+++|.+|||+|||+|+++..+|+. +. .+|+++|+++.+++.+++|++.+++. ++++++++|+.+.... +.|
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~-~~-~~V~avd~n~~a~~~~~~N~~~n~l~-----~~v~~~~~D~~~~~~~-~~~ 175 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNRDFPGE-NIA 175 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTTTCCCC-SCE
T ss_pred hcCCccEEEECcceEcHHHHHHHHh-CC-cEEEEecCCHHHHHHHHHHHHHhCCC-----ceEEEEEcchHHhccC-CCC
Confidence 3789999999999999999999987 33 58999999999999999999998875 6799999999876544 789
Q ss_pred cEEEECCCC--chhHHHHHhccccCcEEEEE
Q 022372 228 DAIHVGAAA--PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 228 D~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~ 256 (298)
|.|+.+.+. .+..+.+.+.||+||.+.+.
T Consensus 176 D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 176 DRILMGYVVRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence 999998764 45667888999999998653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.36 E-value=6.4e-13 Score=115.01 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=93.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.++++..|.. .....+|||+|+++||.+..+|+.++++++++++|.+++..+.|++++++.+.. ++++++.+++
T Consensus 47 ~g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-----~~i~~~~g~a 120 (227)
T d1susa1 47 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-----HKIDFREGPA 120 (227)
T ss_dssp HHHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-----cceeeeehHH
Confidence 4556666542 344579999999999999999999877899999999999999999999998765 7899999998
Q ss_pred CCCCC-------CCCCccEEEECCCCchhH---HHHHhccccCcEEEE
Q 022372 218 RKGWP-------EFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~-------~~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi 255 (298)
.+..+ ..++||.|+.++.....+ +.+.+.|+|||.+++
T Consensus 121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEE
Confidence 75332 136899999999886654 678899999999997
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.5e-12 Score=118.60 Aligned_cols=119 Identities=18% Similarity=0.074 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc---CCccCCCCE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLLKEGSL 210 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~---~~~l~~~~v 210 (298)
.+.....+++.+. ++++++|||+|||+|..+..+|+.. +..+++|+|+++.+++.|+++.++... ...+...++
T Consensus 136 ~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 136 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp CHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 4566778888886 8999999999999999999999885 446899999999999999887654321 011234689
Q ss_pred EEEEcCCCCCCCCCC--CccEEEECCCCc-----hhHHHHHhccccCcEEEE
Q 022372 211 SVHVGDGRKGWPEFA--PYDAIHVGAAAP-----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 211 ~~~~gD~~~~~~~~~--~fD~Ii~~~~~~-----~l~~~l~~~LkpGG~Lvi 255 (298)
+++++|+.+...... ..|+|+++.... +...++.+.|||||++|+
T Consensus 213 ~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp EEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred EEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEE
Confidence 999999876432212 247888866542 334678899999999987
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.33 E-value=3.5e-12 Score=112.00 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=87.9
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. +.+..+|||||||+|..+..+++.. |+.+++++|+ +++++.+++++...+.. +++.++.+|..+
T Consensus 72 ~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-----~ri~~~~~d~~~ 142 (256)
T d1qzza2 72 APADAYD--WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA-----DRVTVAEGDFFK 142 (256)
T ss_dssp HHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTS
T ss_pred HHHhcCC--CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCc-----ceeeeeeeeccc
Confidence 3444444 5677899999999999999999995 7789999997 88999999999887664 789999999877
Q ss_pred CCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
..+ ..||+|++...+++ +.+++++.|||||++++.
T Consensus 143 ~~p--~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 143 PLP--VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp CCS--CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc--ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence 544 46999999998864 347788999999999984
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.33 E-value=1.4e-12 Score=118.63 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=89.1
Q ss_pred HHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---
Q 022372 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--- 221 (298)
Q Consensus 145 L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--- 221 (298)
+...+++|.+|||+|||+|..+..++.. |. .+|+++|+++.+++.|++|+..+++. ++++++++|+.+..
T Consensus 139 ~~~~~~~g~~VLDl~~g~G~~si~~a~~-ga-~~V~~vD~s~~al~~a~~N~~~ngl~-----~~~~~~~~d~~~~~~~~ 211 (324)
T d2as0a2 139 LEKWVQPGDRVLDVFTYTGGFAIHAAIA-GA-DEVIGIDKSPRAIETAKENAKLNGVE-----DRMKFIVGSAFEEMEKL 211 (324)
T ss_dssp HGGGCCTTCEEEETTCTTTHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCHHHHHHHH
T ss_pred HHhhcCCCCeeecccCcccchhhhhhhc-CC-cEEEeecCCHHHHHHHHHHHHHcCCC-----ccceeeechhhhhhHHH
Confidence 3334788999999999999999999886 43 58999999999999999999998864 68999999976521
Q ss_pred -CCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 222 -PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
....+||+|+++++. .++...+.++|||||+|++.....
T Consensus 212 ~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 212 QKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred HhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 133689999999884 234567788999999999976553
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=6.4e-12 Score=114.03 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+|++|||||||+|.++..+|+. |. .+|+++|.++ +++.|+++...++.. .+++++.++..+...+.++||
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~-Ga-~~V~avd~s~-~~~~a~~~~~~~~~~-----~~i~~i~~~~~~l~~~~~~~D 107 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMSS-IIEMAKELVELNGFS-----DKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESST-HHHHHHHHHHHTTCT-----TTEEEEESCTTTSCCSSSCEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh-CC-CEEEEEeCCH-HHHHHHHHHHHhCcc-----ccceEEEeehhhccCccccee
Confidence 457899999999999999988887 43 5899999986 678888888887765 789999999988765567999
Q ss_pred EEEECCCC---------chhHHHHHhccccCcEEE
Q 022372 229 AIHVGAAA---------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~~---------~~l~~~l~~~LkpGG~Lv 254 (298)
+|++.... +.+..+..+.|||||+++
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 99986543 224456678999999984
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=8.3e-12 Score=112.77 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.+|++|||||||+|.++..+|+. |+ .+|+++|.++. ...++++...++.. +++.++.+|..+...+.++||
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~-Ga-~~V~avd~s~~-~~~a~~~~~~n~~~-----~~v~~~~~~~~~~~~~~~~~D 102 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECSSI-SDYAVKIVKANKLD-----HVVTIIKGKVEEVELPVEKVD 102 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECSTT-HHHHHHHHHHTTCT-----TTEEEEESCTTTCCCSSSCEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh-CC-CEEEEEcCcHH-HhhhhhHHHHhCCc-----cccceEeccHHHcccccceeE
Confidence 447899999999999999999987 44 48999999975 56777777777664 789999999988766667999
Q ss_pred EEEECCCC---------chhHHHHHhccccCcEEE
Q 022372 229 AIHVGAAA---------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~~---------~~l~~~l~~~LkpGG~Lv 254 (298)
+|++.... +.+...+.+.|||||+++
T Consensus 103 ~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 103 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 99886543 234467789999999986
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=3e-12 Score=116.07 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC----CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----WPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----~~~~ 224 (298)
..+|.+|||++||+|.++..+|... .+|+++|+++.+++.|++|++.+++ .+++++.+|..+. ....
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~ 213 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEG 213 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTT
T ss_pred HhCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhh
Confidence 4468999999999999999988753 6999999999999999999999775 5899999997652 1233
Q ss_pred CCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++||+|+++++. .++...+.+.|||||.|++....
T Consensus 214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 689999999874 13446778899999999997654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-11 Score=110.35 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=76.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++++|||||||+|.++..+|+. |+ .+|+++|.++.+.. ++++...++.. .++.++.+|..+...+.++||
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~-Ga-~~V~aid~s~~~~~-a~~~~~~~~~~-----~~i~~~~~~~~~l~~~~~~~D 104 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSEILYQ-AMDIIRLNKLE-----DTITLIKGKIEEVHLPVEKVD 104 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESSTHHHH-HHHHHHHTTCT-----TTEEEEESCTTTSCCSCSCEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHc-CC-CEEEEEeCHHHHHH-HHHHHHHhCCC-----ccceEEEeeHHHhcCccccce
Confidence 557899999999999999999987 44 58999999998764 55555665543 789999999988665557999
Q ss_pred EEEECCCCc---------hhHHHHHhccccCcEEE
Q 022372 229 AIHVGAAAP---------EIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~~~---------~l~~~l~~~LkpGG~Lv 254 (298)
+|++..... .+.....+.|||||+++
T Consensus 105 ~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 105 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 999865432 23344567899999986
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=7.8e-12 Score=110.44 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHc-----CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE--EEcCCCC---
Q 022372 150 KPGMHALDIGSGTGYLTACFALMV-----GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRK--- 219 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~-----g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~--~~gD~~~--- 219 (298)
+++.+|||||||+|.++..+++.+ +...+++|+|+++.+++.|++++..... ..++.+ ...+...
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 113 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN-----LENVKFAWHKETSSEYQS 113 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS-----CTTEEEEEECSCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc-----cccccccchhhhhhhhcc
Confidence 344589999999999988887653 1124789999999999999998765322 144444 3333211
Q ss_pred ---CCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEECCC
Q 022372 220 ---GWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 220 ---~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
...+.++||+|++..+++++ .+++.++|||||.+++.+.+.
T Consensus 114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 12234789999999998654 378999999999999977543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=6e-12 Score=104.07 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=82.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+...+...+.+|.+|||+|||+|.++..++.. | .+++++|.++.+++.+++|++..+.. .++....+|.
T Consensus 28 ~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-g--a~vv~vD~~~~a~~~~~~N~~~~~~~-----~~v~~~~~d~ 99 (171)
T d1ws6a1 28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-G--WEAVLVEKDPEAVRLLKENVRRTGLG-----ARVVALPVEV 99 (171)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-T--CEEEEECCCHHHHHHHHHHHHHHTCC-----CEEECSCHHH
T ss_pred HHHHHHHhhccccCCCeEEEeccccchhhhhhhhc-c--chhhhcccCHHHHhhhhHHHHhhccc-----cceeeeehhc
Confidence 34455566556788999999999999999988876 3 58999999999999999999987753 3444444432
Q ss_pred CC--CCCCCCCccEEEECCCC----chhHHHHH--hccccCcEEEEEEC
Q 022372 218 RK--GWPEFAPYDAIHVGAAA----PEIPQALI--DQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~--~~~~~~~fD~Ii~~~~~----~~l~~~l~--~~LkpGG~Lvi~v~ 258 (298)
.. ......+||+|+++++. ......+. .+|+|||++++...
T Consensus 100 ~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 21 11233689999999874 33444443 47999999998654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.4e-12 Score=111.80 Aligned_cols=115 Identities=18% Similarity=0.051 Sum_probs=77.7
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC-------------
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE------------- 207 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~------------- 207 (298)
+.+.+.....+|.+|||+|||+|..+..++... . .+|+|+|+|+.+++.|++++...... ...
T Consensus 41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~-~-~~v~giD~S~~~i~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 116 (257)
T d2a14a1 41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS-F-QDITLSDFTDRNREELEKWLKKEPGA--YDWTPAVKFACELEGN 116 (257)
T ss_dssp HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHHTCTTC--CCCHHHHHHHHHHTTC
T ss_pred HHHHhcccCCCCCEEEEECCCCCHhHHHHhccc-c-CcEEEecCCHHHHHHHHHHHhhcccc--chhhhHHHHHHHhccc
Confidence 334343335677899999999999887777652 1 47999999999999999998654321 000
Q ss_pred ------------CCE-EEEEcCCC----CCCCCCCCccEEEECCCCchh----------HHHHHhccccCcEEEEEECC
Q 022372 208 ------------GSL-SVHVGDGR----KGWPEFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 208 ------------~~v-~~~~gD~~----~~~~~~~~fD~Ii~~~~~~~l----------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+ .....+.. ......++||+|++...++++ .+++.+.|||||.+++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 117 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred cchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 001 11222222 122344789999999887654 37789999999999986543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=4e-11 Score=106.04 Aligned_cols=133 Identities=15% Similarity=0.202 Sum_probs=99.0
Q ss_pred CCCCCccccCCCccChHHHHHH---HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~---~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~ 195 (298)
|....+.++.+..+++|...-. +++... ..+..+|+|+|||+|..+..+++. ++.+|+++|+++++++.|++|
T Consensus 77 F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~--~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~N 152 (271)
T d1nv8a_ 77 FMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKN 152 (271)
T ss_dssp ETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHH
T ss_pred EeeeEEEEecCccCchhhhhhhhhhhhhhhc--cccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHH
Confidence 3455566777888888874433 233322 223468999999999999998865 568999999999999999999
Q ss_pred HHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEEEECCCCc--------------h------------hHHHHHhccc
Q 022372 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIHVGAAAP--------------E------------IPQALIDQLK 248 (298)
Q Consensus 196 ~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~Ii~~~~~~--------------~------------l~~~l~~~Lk 248 (298)
+++++.. .++.+..+|..+.... .++||+|++|++.- + +.+-+.+.|+
T Consensus 153 a~~~~~~-----~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~ 227 (271)
T d1nv8a_ 153 AERHGVS-----DRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT 227 (271)
T ss_dssp HHHTTCT-----TSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred HHHcCCC-----ceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcC
Confidence 9998764 6788889988775543 36899999998740 0 1122457899
Q ss_pred cCcEEEEEECCC
Q 022372 249 PGGRMVIPVGNI 260 (298)
Q Consensus 249 pGG~Lvi~v~~~ 260 (298)
|||.+++.++..
T Consensus 228 ~~G~l~~Eig~~ 239 (271)
T d1nv8a_ 228 SGKIVLMEIGED 239 (271)
T ss_dssp TTCEEEEECCTT
T ss_pred CCCEEEEEECHH
Confidence 999999988853
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.22 E-value=9.7e-12 Score=100.73 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=85.1
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+...|...+ .|.+|||+|||+|.++..++.+ |. .+|+++|.++++++.+++++...+.. ++++++++|....
T Consensus 5 ~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~r-ga-~~v~~ve~~~~a~~~~~~n~~~~~~~-----~~~~ii~~D~~~~ 76 (152)
T d2esra1 5 IFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAE-----NRFTLLKMEAERA 76 (152)
T ss_dssp HHHHHCSCC-CSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCG-----GGEEEECSCHHHH
T ss_pred HHHHHHhhC-CCCeEEEcCCccCHHHHHHHHh-Cc-ceeeeehhchhhhhhhhhhhhhcccc-----cchhhhccccccc
Confidence 334454223 5889999999999999988776 45 59999999999999999999887654 6799999998653
Q ss_pred C-CCCCCccEEEECCCCch-----hHHHHH--hccccCcEEEEEECC
Q 022372 221 W-PEFAPYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~-~~~~~fD~Ii~~~~~~~-----l~~~l~--~~LkpGG~Lvi~v~~ 259 (298)
. ...++||+|+++++... ..+.+. +.|+|||.+++....
T Consensus 77 l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 77 IDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp HHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ccccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 2 22468999999998642 233333 469999999986654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=2e-11 Score=113.74 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC---CccCCCCE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---PLLKEGSL 210 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~---~~l~~~~v 210 (298)
.|.+...+++.+. +++|++|||+|||+|..+..+|+..+ ..+|+|+|+++.+++.|+++..+.+.. .......+
T Consensus 201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 3567888899887 99999999999999999999999864 358999999999999999988654310 01122344
Q ss_pred EEE-EcCCCCCCC---CCCCccEEEECCCC-----chhHHHHHhccccCcEEEE
Q 022372 211 SVH-VGDGRKGWP---EFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 211 ~~~-~gD~~~~~~---~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi 255 (298)
.+. .++...... ....+|+|+++... .+...++++.|||||++|.
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 442 333332110 11246888887543 2445788999999999987
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.19 E-value=2.3e-11 Score=110.04 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=87.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~ 223 (298)
.+.+|.+|||++||+|.++..++.. |. .+|+++|.++.+++.+++|++.+++ +..+++++.+|+.+.. ..
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~-ga-~~V~~vD~s~~a~~~a~~N~~~n~l----~~~~~~~i~~d~~~~l~~~~~~ 214 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMG-GA-MATTSVDLAKRSRALSLAHFEANHL----DMANHQLVVMDVFDYFKYARRH 214 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHT-TB-SEEEEEESCTTHHHHHHHHHHHTTC----CCTTEEEEESCHHHHHHHHHHT
T ss_pred HhhCCCceeecCCCCcHHHHHHHhC-CC-ceEEEecCCHHHHHHHHHHHHHhcc----cCcceEEEEccHHHHHHHHHhh
Confidence 3678999999999999999887774 33 5899999999999999999998775 3368999999986532 23
Q ss_pred CCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 224 FAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 224 ~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+||+|+++++. .++.+.+.++|+|||.|++.....
T Consensus 215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3689999999873 235567788999999999977653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.6e-11 Score=101.22 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|-+...+++.+. +.++..+||++||+|..+..+++.. ++++|+|+|.++++++.|++++...+ .++.+++
T Consensus 9 pVll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~-------~r~~~~~ 78 (192)
T d1m6ya2 9 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFK 78 (192)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEE
T ss_pred chHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc-------ccccchh
Confidence 456778889887 8899999999999999999999987 66899999999999999999987643 5899999
Q ss_pred cCCCCC-----CCCCCCccEEEECCCCc---------------hhHHHHHhccccCcEEEEEE
Q 022372 215 GDGRKG-----WPEFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 215 gD~~~~-----~~~~~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~v 257 (298)
++..+. ....++||.|+.+.++. ..+....++|+|||++++..
T Consensus 79 ~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 79 VSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 887642 11236899999998762 22356778999999998844
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.08 E-value=2.7e-10 Score=96.11 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCccChHHHHHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022372 129 NATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~ 207 (298)
.|..+.+.+.+.++..+.. .--.|++|||+|||+|.++..++.. ++ .+|+++|+++.+++.|++|.
T Consensus 25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-ga-~~V~~vDid~~a~~~ar~N~----------- 91 (197)
T d1ne2a_ 25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GA-ESVTAFDIDPDAIETAKRNC----------- 91 (197)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TB-SEEEEEESCHHHHHHHHHHC-----------
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-CC-CcccccccCHHHHHHHHHcc-----------
Confidence 3555556666666544431 1225889999999999999887776 44 58999999999999999885
Q ss_pred CCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
.+++++++|..+. .++||+|++|.++
T Consensus 92 ~~~~~~~~D~~~l---~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 92 GGVNFMVADVSEI---SGKYDTWIMNPPF 117 (197)
T ss_dssp TTSEEEECCGGGC---CCCEEEEEECCCC
T ss_pred ccccEEEEehhhc---CCcceEEEeCccc
Confidence 4678999998653 2689999999886
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=5e-10 Score=94.64 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=70.4
Q ss_pred cChHHHHHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 132 ISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 132 is~p~~~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
.+.+++...++..... .--.|.+|||+|||+|.++..++.. |. .+|+|+|+++.+++.|++|+...+ .+.
T Consensus 26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g~-~~v~~vdi~~~~~~~a~~N~~~~~-------~~~ 96 (201)
T d1wy7a1 26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEFK-------GKF 96 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGGT-------TSE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-CC-CEEEEEcCcHHHHHHHHHHHHHcC-------CCc
Confidence 3345555555443321 1236789999999999999888775 44 589999999999999999987654 467
Q ss_pred EEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 211 SVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 211 ~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
++..+|.... .++||+|+++++.
T Consensus 97 ~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 97 KVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp EEEESCGGGC---CCCCSEEEECCCC
T ss_pred eEEECchhhh---CCcCcEEEEcCcc
Confidence 8899987654 3679999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.1e-10 Score=102.41 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=77.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC-----------
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK----------- 206 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~----------- 206 (298)
...+.+.+......|.+|||+|||+|..+...+.... .+|+++|+++.+++.++++++..... +.
T Consensus 41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~--~d~~~~~~~~~~~ 116 (263)
T d2g72a1 41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGA--FNWSMYSQHACLI 116 (263)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCccc--ccchhhhhhhhhh
Confidence 3444454543455788999999999987765554422 58999999999999999877542210 00
Q ss_pred ---------------CCCEEEEEcCCCCCC------CCCCCccEEEECCCCchh----------HHHHHhccccCcEEEE
Q 022372 207 ---------------EGSLSVHVGDGRKGW------PEFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 207 ---------------~~~v~~~~gD~~~~~------~~~~~fD~Ii~~~~~~~l----------~~~l~~~LkpGG~Lvi 255 (298)
.....+...|..... ...++||+|++..+++++ .+++.++|||||.|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~ 196 (263)
T d2g72a1 117 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 196 (263)
T ss_dssp HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 001233444554311 223579999999887654 2578889999999998
Q ss_pred EE
Q 022372 256 PV 257 (298)
Q Consensus 256 ~v 257 (298)
.-
T Consensus 197 ~~ 198 (263)
T d2g72a1 197 IG 198 (263)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.07 E-value=3.2e-10 Score=101.79 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=84.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+. ...++.+|||++||+|.++..++.. | .+|++||.|+.+++.|++|+..+++. ..+++++++|+
T Consensus 120 r~~~~~~~~-~~~~~~rVLdlf~~tG~~sl~aa~~-G--A~V~~VD~s~~al~~a~~N~~ln~~~----~~~~~~i~~D~ 191 (309)
T d2igta1 120 WEWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAA-G--AEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDA 191 (309)
T ss_dssp HHHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCH
T ss_pred HHHHHHHHh-hccCCCeEEEecCCCcHHHHHHHhC-C--CeEEEEeChHHHHHHHHHhhhhhccc----CCcEEEEeCCH
Confidence 333444443 3567889999999999999999876 3 58999999999999999999988753 25799999998
Q ss_pred CCCC----CCCCCccEEEECCCC----------------chhHHHHHhccccCcEEEEE
Q 022372 218 RKGW----PEFAPYDAIHVGAAA----------------PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~----~~~~~fD~Ii~~~~~----------------~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+.. ....+||+|+++++. ..+.+.+.++|+|||.+++.
T Consensus 192 ~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 192 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred HHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 7532 123689999999873 11335667899999875543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.6e-10 Score=105.56 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
..++..+++.+. ..++.+|||+-||+|.++..||+.. .+|+|+|.++++++.|++|.+.++. .|+.++.
T Consensus 198 e~l~~~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~ 266 (358)
T d1uwva2 198 QKMVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL------QNVTFYH 266 (358)
T ss_dssp HHHHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred hHHHHHHHHhhc--cCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccc------ccceeee
Confidence 344555666665 6788999999999999999999875 6999999999999999999998776 6999999
Q ss_pred cCCCCCCCC----CCCccEEEECCCCchhH---HHHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEE
Q 022372 215 GDGRKGWPE----FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRY 285 (298)
Q Consensus 215 gD~~~~~~~----~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~f 285 (298)
++..+.... ...||+|+++++-..+. +.+.+ ++|.-.++++.+... .++..+. ++.|+.+.+.++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~---~~gy~l~~i~~~D~ 342 (358)
T d1uwva2 267 ENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALL---KAGYTIARLAMLDM 342 (358)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHH---HTTCEEEEEEEECC
T ss_pred cchhhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHH---HCCCeEeEEEEEec
Confidence 998764432 35799999998865443 33333 367777777765432 1222221 33589999999999
Q ss_pred eecccchh
Q 022372 286 VPLTSRDA 293 (298)
Q Consensus 286 vPl~~~~~ 293 (298)
+|-|...+
T Consensus 343 FP~T~HvE 350 (358)
T d1uwva2 343 FPHTGHLE 350 (358)
T ss_dssp STTSSCCE
T ss_pred CCCCccEE
Confidence 99998876
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.05 E-value=4.4e-10 Score=93.56 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.+...+...|. ...+|.+|||++||+|.++...+.+ |. .+|+++|.++.+++.+++|+...+.. .+++++++
T Consensus 27 ~vrealFn~l~-~~~~~~~vLDlfaGsG~~g~ea~sr-Ga-~~v~~ve~~~~a~~~~~~N~~~~~~~-----~~~~i~~~ 98 (182)
T d2fhpa1 27 KVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR-GM-DKSICIEKNFAALKVIKENIAITKEP-----EKFEVRKM 98 (182)
T ss_dssp HHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEES
T ss_pred HHHHHHHHHHH-HhcCCCEEEEcccccccccceeeec-ch-hHHHHHHHHHHHHHHHHHHhhhhhcc-----cccccccc
Confidence 34445556664 2446899999999999999988887 44 58999999999999999999887653 58999999
Q ss_pred CCCCCC----CCCCCccEEEECCCCc-----hhHHHHHh--ccccCcEEEEEECC
Q 022372 216 DGRKGW----PEFAPYDAIHVGAAAP-----EIPQALID--QLKPGGRMVIPVGN 259 (298)
Q Consensus 216 D~~~~~----~~~~~fD~Ii~~~~~~-----~l~~~l~~--~LkpGG~Lvi~v~~ 259 (298)
|+.... ....+||+|+++++.. .+.+.+.+ .|+++|.+++....
T Consensus 99 D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 99 DANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK 153 (182)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence 986532 1335899999999863 34455543 69999999986544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.2e-09 Score=95.36 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC------CC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------EF 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~------~~ 224 (298)
+..++||+|||+|..+..+++.. ++.+++|+|+++++++.|++|++.+++. .++.+++.+...... ..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS-----DLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTTCSSTTTSTTCCS
T ss_pred ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCC-----cceeeeeeccHHhhhhhhhhccc
Confidence 34589999999999999999986 5689999999999999999999998875 788888876544321 23
Q ss_pred CCccEEEECCCC
Q 022372 225 APYDAIHVGAAA 236 (298)
Q Consensus 225 ~~fD~Ii~~~~~ 236 (298)
++||+|+++++.
T Consensus 135 ~~fD~ivsNPPY 146 (250)
T d2h00a1 135 IIYDFCMCNPPF 146 (250)
T ss_dssp CCBSEEEECCCC
T ss_pred CceeEEEecCcc
Confidence 579999999986
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2e-09 Score=96.05 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=73.1
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
..+. .++|.+|||+++|.|.-|..++.+.++.++++++|+++..++..++++++.+. .++.+...|.....+
T Consensus 88 ~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~ 159 (293)
T d2b9ea1 88 MLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSP 159 (293)
T ss_dssp HHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCT
T ss_pred cccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcc
Confidence 3444 78899999999999999999999888888999999999999999999998665 689999988765433
Q ss_pred C---CCCccEEEECCCC
Q 022372 223 E---FAPYDAIHVGAAA 236 (298)
Q Consensus 223 ~---~~~fD~Ii~~~~~ 236 (298)
. .+.||.|+++++.
T Consensus 160 ~~~~~~~fD~VL~DaPC 176 (293)
T d2b9ea1 160 SDPRYHEVHYILLDPSC 176 (293)
T ss_dssp TCGGGTTEEEEEECCCC
T ss_pred cccccceeeEEeecCcc
Confidence 2 2579999999874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=6.5e-10 Score=92.50 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=83.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+...|...+ .+.+|||++||+|.++..++.+ |. .+|+.+|.++.+++.+++|+...+. .+.+++.+|+.
T Consensus 32 e~lfn~l~~~~-~~~~vLDlfaGsG~~giealsr-Ga-~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~~ 102 (183)
T d2fpoa1 32 ETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSR-YA-AGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAM 102 (183)
T ss_dssp HHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHH
T ss_pred HHHHhhhhccc-chhhhhhhhccccceeeeEEec-Cc-ceeEEEEEeechhhHHHHHHhhccc------cceeeeeeccc
Confidence 44444444222 5689999999999999988877 44 5899999999999999999987543 68899999977
Q ss_pred CCC-CCCCCccEEEECCCCch-----hHHHHH--hccccCcEEEEEEC
Q 022372 219 KGW-PEFAPYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~-~~~~~fD~Ii~~~~~~~-----l~~~l~--~~LkpGG~Lvi~v~ 258 (298)
... ....+||+|+++++... +.+.+. ..|+++|.+++...
T Consensus 103 ~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 103 SFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp HHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 533 23468999999998642 334443 35899999998653
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=2.4e-09 Score=96.31 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++|++|||+++|.|.-|..++.....++.+++.|.++..+...++++++.+. .++.+...|..........||
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hcccccccccccccccccccc
Confidence 78999999999999999999999987788999999999999999999998665 688888887765544446899
Q ss_pred EEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|+++++. ..+..+..+.|||||+||.++-.
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 99999874 12235677899999999997754
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.2e-08 Score=90.51 Aligned_cols=109 Identities=21% Similarity=0.301 Sum_probs=84.3
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG- 220 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~- 220 (298)
...|. .++|.+|||+++|.|.-|..+++.. .+++++++|.++..+...++++++.+. .++.....|....
T Consensus 95 ~~~L~--~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~~~ 165 (284)
T d1sqga2 95 MTWLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQ 165 (284)
T ss_dssp HHHHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHH
T ss_pred ccccC--ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccc------cceeeeccccccch
Confidence 33444 7899999999999999999999974 558999999999999999999998665 5665555444321
Q ss_pred CCCCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....+.||.|+++++. ..+.+++.+.|||||+||.++-.
T Consensus 166 ~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 166 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 1223679999999985 12235667789999999998754
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.84 E-value=1.2e-08 Score=91.80 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=80.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcC----CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g----~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
.+++.+|||.+||+|.+...+.+.+. ...+++|+|+++.+++.|+.++...+ .+..+..+|.....+.
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~- 186 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANLLV- 186 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCCCC-
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-------hhhhhhcccccccccc-
Confidence 46678999999999999888876542 22479999999999999998887654 3566778887665444
Q ss_pred CCccEEEECCCCch------------------------hHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAAAPE------------------------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~------------------------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+||+|+++++... ..+.+.+.|+|||++++-++.
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 68999999998620 246678999999998886654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.81 E-value=8.4e-09 Score=89.06 Aligned_cols=89 Identities=15% Similarity=0.049 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+.+..++++.+. +.++++|||||||+|.+|..|++.. .+|+++|+++.+++.++++... .+|+++++
T Consensus 7 ~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~ 73 (235)
T d1qama_ 7 KHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--------HDNFQVLN 73 (235)
T ss_dssp HHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--------CCSEEEEC
T ss_pred HHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc--------ccchhhhh
Confidence 445667777765 7899999999999999999999984 6899999999999999887633 27999999
Q ss_pred cCCCCCCCCCCCccEEEECCCC
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
+|+.+...+......|+.+.+.
T Consensus 74 ~D~l~~~~~~~~~~~vv~NLPY 95 (235)
T d1qama_ 74 KDILQFKFPKNQSYKIFGNIPY 95 (235)
T ss_dssp CCGGGCCCCSSCCCEEEEECCG
T ss_pred hhhhhccccccccceeeeeehh
Confidence 9998754433444567788776
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=5e-08 Score=82.46 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+++|+|||.|.-+..+|-. .|+.+++.+|.+...+++.++-....+ ..|++++++.+.+... ..+||+|
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~------L~nv~v~~~R~E~~~~-~~~fD~V 136 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELK------LENIEPVQSRVEEFPS-EPPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTT------CSSEEEEECCTTTSCC-CSCEEEE
T ss_pred cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcC------Ccceeeeccchhhhcc-cccccee
Confidence 4579999999999999999987 477899999999999999998887744 4799999999877544 3689999
Q ss_pred EECCCC--chhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAAA--PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++-+.. ..+.+-....++++|++++.-|..
T Consensus 137 ~sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~~ 168 (207)
T d1jsxa_ 137 ISRAFASLNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp ECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred hhhhhcCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 988875 356678888999999999987754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.73 E-value=1.2e-08 Score=85.82 Aligned_cols=107 Identities=23% Similarity=0.210 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+++...|++.+. .+++.+|||.|||+|.++..+.+.......++|+|+++..++.+ .+..+++
T Consensus 5 ~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------~~~~~~~ 67 (223)
T d2ih2a1 5 PEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGIL 67 (223)
T ss_dssp HHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEE
T ss_pred HHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------ccceeee
Confidence 455666777775 77889999999999999888887766667899999998654322 3457788
Q ss_pred cCCCCCCCCCCCccEEEECCCCc-----------------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAP-----------------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~-----------------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|....... ..||+|+.+.+.. .+.+...+.||+||++++-+++
T Consensus 68 ~~~~~~~~~-~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 68 ADFLLWEPG-EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp SCGGGCCCS-SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eehhccccc-cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 887665433 6899999998741 1124567889999999987765
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=7.9e-09 Score=92.83 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+...+||.+|.|.|..+..+.+. .+..+|+.+|++++.++.|++.+..... ..+..++++++.+|+..... ...+||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCccc
Confidence 45579999999999999888876 4557999999999999999998754221 11345899999999886432 235799
Q ss_pred EEEECCCC-------------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA-------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~-------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++..- .+..+.+.+.|+|||++++..+.
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s 197 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence 99987631 23457899999999999986643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.72 E-value=2e-08 Score=88.53 Aligned_cols=108 Identities=21% Similarity=0.200 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+...+||-+|.|.|..+..+.+. .+..+++.+|++++.++.|++.+....- .+..++++++.+|+..... ..++||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhhcCCCCC
Confidence 45579999999999999998876 3447999999999999999998765332 2455899999999886332 236899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECCC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|+++..- .+..+.+.+.|+|||+++...++.
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 99999753 355688999999999999977653
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.70 E-value=9.6e-09 Score=91.50 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+...+||-+|.|.|..+..+.+. .+..+|+.+|++++.++.|++.+..... .+..++++++.+|+..... ..++||
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCceEEEecCCchHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 34579999999999999888876 3557999999999999999998765432 1445899999999886443 235799
Q ss_pred EEEECCCC-----------chhHHHHHhccccCcEEEEEECCC
Q 022372 229 AIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 229 ~Ii~~~~~-----------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|+++..- .+..+.+.+.|+|||++++..+..
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 99988642 234578899999999999977653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.67 E-value=3.6e-08 Score=87.54 Aligned_cols=108 Identities=21% Similarity=0.198 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~f 227 (298)
+...+||-+|-|.|..+..+.+. .+..+++.+|++++.++.+++.+..... ....++++++.+|+..... ..++|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~--~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhc--cccCCCcEEEEccHHHHHhhccccCc
Confidence 34479999999999999988886 3446899999999999999998754321 1445899999999886442 23589
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|+++..- .+..+.+.+.|+|||++++..+..
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 999998753 245588999999999999977654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=3.2e-08 Score=87.65 Aligned_cols=121 Identities=18% Similarity=0.120 Sum_probs=89.6
Q ss_pred HHHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
.+..++....- ..+...+||-+|.|.|..+..+.+. .+..+++.+|++++.++.|++.+..+.. .+..++++++.+
T Consensus 63 ~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~--~~~d~rv~i~~~ 139 (285)
T d2o07a1 63 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVG 139 (285)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEES
T ss_pred HHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhcc--ccCCCCceEEEc
Confidence 34444443321 1234579999999999999998876 3447999999999999999998764321 144589999999
Q ss_pred CCCCCCC-CCCCccEEEECCCC----------chhHHHHHhccccCcEEEEEECCC
Q 022372 216 DGRKGWP-EFAPYDAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 216 D~~~~~~-~~~~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+..... ..++||+|+++..- .+..+.+.+.|+|||.+++..+..
T Consensus 140 Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 140 DGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp CHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 9886432 23689999998653 244588899999999999977553
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=1.7e-08 Score=89.02 Aligned_cols=109 Identities=19% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc----CCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~----~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
.+...+||.+|.|.|..+..+.+. +. .+|+.+|++++.++.|++.+..... ......++++++.+|+.......
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~-~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH-DV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-CC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHh-CC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 345589999999999998888765 33 6899999999999999986632110 00012378999999987654445
Q ss_pred CCccEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++||+|+++..- .+..+.+.+.|+|||++++-.++
T Consensus 148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 789999988754 24457899999999999986643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.61 E-value=2.9e-08 Score=88.89 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+...+||.+|.|.|..+..+.+. .+..+|+.+|++++.++.|++.+.... ..+..++++++.+|+..... ..++||
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~--~~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMS--CGFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTS--GGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhc--cccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 44579999999999999988876 344699999999999999999875432 22556899999999886432 236899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECCC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+|+++..- .+..+.+.+.|+|||+++.-.+..
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 99998753 234578899999999999976553
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.60 E-value=1.3e-07 Score=78.20 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=83.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+...+...+ .+.+|||+.||||.++...+.+ |. .+|+.||.+...++..++|++..+.. .....+...|.
T Consensus 31 realFn~l~~~~-~~~~vLDlFaGsG~~glEalSR-GA-~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~ 103 (183)
T d2ifta1 31 KETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSR-QA-KKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSS 103 (183)
T ss_dssp HHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCH
T ss_pred HHHHHHHhhhhc-ccceEeecccCccceeeeeeee-cc-eeeEEeecccchhhhHhhHHhhhccc----ccccccccccc
Confidence 344445554222 5679999999999999999987 44 59999999999999999999886542 23566676664
Q ss_pred CC---CCCCCCCccEEEECCCCch-----hHHHHH--hccccCcEEEEEECC
Q 022372 218 RK---GWPEFAPYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGN 259 (298)
Q Consensus 218 ~~---~~~~~~~fD~Ii~~~~~~~-----l~~~l~--~~LkpGG~Lvi~v~~ 259 (298)
.. ......+||+|+++++... +.+.+. .+|+++|.+++....
T Consensus 104 ~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 104 LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred cccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 43 2223357999999999743 334443 469999999986543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.58 E-value=2.4e-09 Score=93.13 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
+.+...+++.+. +.++++|||||||+|.+|..|++.. .+|+++|+++.+++.+++++.. .+++++++
T Consensus 15 ~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~ 81 (245)
T d1yuba_ 15 EKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL--------NTRVTLIH 81 (245)
T ss_dssp TTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT--------CSEEEECC
T ss_pred HHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhh--------ccchhhhh
Confidence 455778888886 8889999999999999999999984 5899999999998888765432 26899999
Q ss_pred cCCCCCCCCCCCccEEEECCCCc
Q 022372 215 GDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 215 gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
+|+.+...+...++.|+++.+..
T Consensus 82 ~D~l~~~~~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 82 QDILQFQFPNKQRYKIVGNIPYH 104 (245)
T ss_dssp SCCTTTTCCCSSEEEEEEECCSS
T ss_pred hhhhccccccceeeeEeeeeehh
Confidence 99998655556778888988863
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.55 E-value=2.5e-07 Score=86.05 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCC------------cEEEEEeCCHHHHHHHHHH
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ------------GRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~------------~~V~giD~s~~~l~~A~~~ 195 (298)
.|+..+..++...|++.+. ..++.+|+|-+||+|.+...+.+.+... ..++|+|+++.....|+-+
T Consensus 141 ~G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n 218 (425)
T d2okca1 141 AGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 218 (425)
T ss_dssp CGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred chhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence 3566777778888888886 6778999999999999988887765221 2499999999999999988
Q ss_pred HHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-----------------------hhHHHHHhccccCcE
Q 022372 196 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-----------------------EIPQALIDQLKPGGR 252 (298)
Q Consensus 196 ~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~ 252 (298)
+.-.+.. ..+..+..+|....... ..||+|+++++.. .....+.+.|++||+
T Consensus 219 ~~l~g~~----~~~~~i~~~d~l~~~~~-~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~ 293 (425)
T d2okca1 219 LYLHGIG----TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGR 293 (425)
T ss_dssp HHHTTCC----SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred hhhcCCc----cccceeecCchhhhhcc-cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCe
Confidence 8765542 24556778887765443 6899999999861 133678899999999
Q ss_pred EEEEECC
Q 022372 253 MVIPVGN 259 (298)
Q Consensus 253 Lvi~v~~ 259 (298)
+++-+++
T Consensus 294 ~~iI~p~ 300 (425)
T d2okca1 294 AAVVLPD 300 (425)
T ss_dssp EEEEEEH
T ss_pred EEEEech
Confidence 9886654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.52 E-value=1e-07 Score=82.50 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
....+|||||||+|..+..+++.. |+.+++..|. |+.++. .. ..++++++.+|..+..+ ..|+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~-------~~-----~~~ri~~~~gd~~~~~p---~~D~ 142 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIEN-------AP-----PLSGIEHVGGDMFASVP---QGDA 142 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTT-------CC-----CCTTEEEEECCTTTCCC---CEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhhc-------cC-----CCCCeEEecCCcccccc---cceE
Confidence 455799999999999999999995 7789999997 333322 11 22789999999887654 3599
Q ss_pred EEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 230 IHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 230 Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
++....+++ +.+++++.|+|||++++.
T Consensus 143 ~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 143 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 177 (244)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999988754 457888999999999983
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.52 E-value=5.2e-07 Score=75.00 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCcHH----HHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHH--------------HhccCCccC--
Q 022372 150 KPGMHALDIGSGTGYL----TACFALMVG---PQGRAVGVEHIPELVVSSIQNIE--------------KSAAAPLLK-- 206 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~----t~~La~~~g---~~~~V~giD~s~~~l~~A~~~~~--------------~~~~~~~l~-- 206 (298)
.+..+||++|||+|.- +..+.+... ...+++|.|+++..++.|++..- +.-....-.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3446999999999973 333444322 12479999999999999974321 100000000
Q ss_pred ---------CCCEEEEEcCCCCCC-CCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 207 ---------EGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 207 ---------~~~v~~~~gD~~~~~-~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
...+++...+..... +..++||+|+|-.++. .+.+.+.+.|+|||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 023555555555432 3347899999999873 455788999999999986
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=9.9e-07 Score=77.53 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
-+.+...+++.+. +.+++.|||||+|.|.+|..|++.. .+|+++|+++.+++..++.+..... ..+++++
T Consensus 6 d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~~i 75 (278)
T d1zq9a1 6 NPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPV-----ASKLQVL 75 (278)
T ss_dssp CHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhcc-----ccchhhh
Confidence 3566777888776 7889999999999999999999984 5999999999999999988765332 2689999
Q ss_pred EcCCCCCCCCCCCccEEEECCCCc
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
.+|+.....+ .++.|+.+.+..
T Consensus 76 ~~D~l~~~~~--~~~~vV~NLPY~ 97 (278)
T d1zq9a1 76 VGDVLKTDLP--FFDTCVANLPYQ 97 (278)
T ss_dssp ESCTTTSCCC--CCSEEEEECCGG
T ss_pred HHHHhhhhhh--hhhhhhcchHHH
Confidence 9999875433 467888888863
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=2.8e-07 Score=76.19 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|-+...+++.|. +++|..++|..+|.|..+..+.+. +++|+|+|.++++++.|++.. .+++.+++
T Consensus 4 pVll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~----------~~~~~~~~ 68 (182)
T d1wg8a2 4 PVLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLH----------LPGLTVVQ 68 (182)
T ss_dssp CTTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTC----------CTTEEEEE
T ss_pred chHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhcc----------ccceeEee
Confidence 345677888887 899999999999999999888875 379999999999999887531 26889999
Q ss_pred cCCCCCC-----CCCCCccEEEECCCCch---------------hHHHHHhccccCcEEEEEEC
Q 022372 215 GDGRKGW-----PEFAPYDAIHVGAAAPE---------------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 215 gD~~~~~-----~~~~~fD~Ii~~~~~~~---------------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++..+.. ...+.+|.|+.+.+... .++.....|++||++++-.-
T Consensus 69 ~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 69 GNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp SCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 8876421 12367999999987621 23566788999999998554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.35 E-value=7.2e-07 Score=76.71 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCCCc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~~f 227 (298)
.+.+++|+|+|.|.-+..+|-.. |+.+++.+|.+...+++.+.-..+.++ .|+.++++.+.... ...++|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~~~~~~~~~~~~ 142 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESY 142 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhhccccccccccc
Confidence 56799999999999999999885 678999999999999999888877554 79999887764321 123589
Q ss_pred cEEEECCCC--chhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++-+.. ..+.+-....+++||++++.-|..
T Consensus 143 D~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~ 177 (239)
T d1xdza_ 143 DIVTARAVARLSVLSELCLPLVKKNGLFVALKAAS 177 (239)
T ss_dssp EEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred eEEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence 999998876 467788899999999999987764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.34 E-value=2.7e-07 Score=79.13 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+..|.....+.+.+. .++| .+|||+|++.|+.+..++..+ +++++++++|+++....... ...+
T Consensus 63 ~k~p~d~~~~~eli~-~~KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----------~~~~ 129 (232)
T d2bm8a1 63 LKDPDTQAVYHDMLW-ELRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----------SDME 129 (232)
T ss_dssp CSCHHHHHHHHHHHH-HHCC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----------GGCT
T ss_pred ccCHHHHHHHHHHHH-HhCC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----------cccc
Confidence 344776665555554 3454 689999999999888877554 56789999999875433221 1227
Q ss_pred CEEEEEcCCCCCC----CCCCCccEEEECCCCch--hHH--HHHhccccCcEEEE
Q 022372 209 SLSVHVGDGRKGW----PEFAPYDAIHVGAAAPE--IPQ--ALIDQLKPGGRMVI 255 (298)
Q Consensus 209 ~v~~~~gD~~~~~----~~~~~fD~Ii~~~~~~~--l~~--~l~~~LkpGG~Lvi 255 (298)
+++++.+|..+.. .....+|.|+.++.-.. ... ++...|++||.+++
T Consensus 130 ~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 130 NITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFII 184 (232)
T ss_dssp TEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEE
T ss_pred ceeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEE
Confidence 8999999976421 12246899998877422 221 34579999999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.31 E-value=5.9e-07 Score=77.53 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
....+|||||+|+|..+..+++.. |+.+++..|. ++.++.+ +. .++++++.+|..+..+ .+|+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~-------~~-----~~rv~~~~gD~f~~~p---~aD~ 141 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENL-------SG-----SNNLTYVGGDMFTSIP---NADA 141 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTC-------CC-----BTTEEEEECCTTTCCC---CCSE
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhC-------cc-----cCceEEEecCcccCCC---CCcE
Confidence 344689999999999999999995 7789999997 4443322 11 2799999999887543 5799
Q ss_pred EEECCCCc--------hhHHHHHhccccC---cEEEE
Q 022372 230 IHVGAAAP--------EIPQALIDQLKPG---GRMVI 255 (298)
Q Consensus 230 Ii~~~~~~--------~l~~~l~~~LkpG---G~Lvi 255 (298)
++....++ .+.+++++.|+|| |++++
T Consensus 142 ~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli 178 (244)
T d1fp2a2 142 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 178 (244)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred EEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEE
Confidence 99998885 3557888999998 66766
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.3e-06 Score=71.80 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=73.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++.+|||+||++|..+.++++..++.+.++++|..+. -..+++.++++|..+..
T Consensus 19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------------~~i~~~~~~~~d~~~~~~~~~~~ 81 (180)
T d1ej0a_ 19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------------DPIVGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------------CCCTTEEEEESCTTSHHHHHHHH
T ss_pred ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------------cccCCceEeecccccchhhhhhh
Confidence 4689999999999999999999998888889999997652 12368899999987521
Q ss_pred --CCCCCccEEEECCCCc-----------------hhHHHHHhccccCcEEEEEECC
Q 022372 222 --PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~-----------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....++|+|+++.+.. ....-+.+.||+||.+|+-+-.
T Consensus 82 ~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 1236799999998751 1113456789999999997643
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.2e-06 Score=83.64 Aligned_cols=128 Identities=18% Similarity=0.201 Sum_probs=89.9
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCC-----------------cEEEEEeCCHHHHHH
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-----------------GRAVGVEHIPELVVS 191 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~-----------------~~V~giD~s~~~l~~ 191 (298)
|+..+..++...|++.+. ..++.+|+|-.||+|.+.....+.+... ..++|+|+++.+...
T Consensus 144 GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred chhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 677777788888888886 6778899999999999987776654211 258999999999999
Q ss_pred HHHHHHHhccCCccCCCCEEEEEcCCCCC-CCCCCCccEEEECCCCc--------------------hhHHHHHhccccC
Q 022372 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAP--------------------EIPQALIDQLKPG 250 (298)
Q Consensus 192 A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-~~~~~~fD~Ii~~~~~~--------------------~l~~~l~~~LkpG 250 (298)
|+-++--++....+.. .-.+..++.... ......||+|++++++- -....+.+.||+|
T Consensus 222 a~~nl~l~~~~~~i~~-~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDH-GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHTTTCCCBGGG-TBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHhhcccccccc-cchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 9988865543211111 122344444321 11235799999999861 1347788999999
Q ss_pred cEEEEEECC
Q 022372 251 GRMVIPVGN 259 (298)
Q Consensus 251 G~Lvi~v~~ 259 (298)
|++.+.+++
T Consensus 301 Gr~aiIlP~ 309 (524)
T d2ar0a1 301 GRAAVVVPD 309 (524)
T ss_dssp EEEEEEEEH
T ss_pred CcEEEEEeh
Confidence 999986653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=3.4e-07 Score=79.48 Aligned_cols=90 Identities=11% Similarity=-0.010 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.+.+...+++.+. +.+++.|||||+|.|.+|..|++.. .+|+++|+++.+++..+++... .++++++
T Consensus 6 d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~~~~~ii 72 (252)
T d1qyra_ 6 DQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFL--------GPKLTIY 72 (252)
T ss_dssp CHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTT--------GGGEEEE
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhh--------ccchhHH
Confidence 3556778888886 7889999999999999999999874 5899999999999998764422 2689999
Q ss_pred EcCCCCCCCCC-----CCccEEEECCCC
Q 022372 214 VGDGRKGWPEF-----APYDAIHVGAAA 236 (298)
Q Consensus 214 ~gD~~~~~~~~-----~~fD~Ii~~~~~ 236 (298)
.+|+.+..... +.--.|+.+.+.
T Consensus 73 ~~D~l~~~~~~~~~~~~~~~~vvgNlPY 100 (252)
T d1qyra_ 73 QQDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp CSCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred hhhhhhhcccccccccCCCeEEEecchH
Confidence 99998643210 112267777776
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.19 E-value=6.7e-06 Score=66.06 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++||-+|+|. |..+..+++..| .+|+++|.+++.++.|++.- ....+...+.....
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~g-----------a~~~~~~~~~~~~~~~~~~ 89 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCG-----------ADVTLVVDPAKEEESSIIE 89 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT-----------CSEEEECCTTTSCHHHHHH
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcC-----------CcEEEeccccccccchhhh
Confidence 389999999999996 888899998875 58999999999999987631 12222221111110
Q ss_pred ----CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 222 ----PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.....+|+|+-....+...+...+.++++|++++ ++.
T Consensus 90 ~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~-~G~ 130 (170)
T d1e3ja2 90 RIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLML-VGM 130 (170)
T ss_dssp HHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE-CSC
T ss_pred hhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEE-Eec
Confidence 0124689999888888888999999999999997 443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.19 E-value=3.3e-06 Score=72.44 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
....+|||||||+|..+..+++.. |+.+++..|..+. ++.+ -..++++++.+|..+..|. .|.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~------------~~~~r~~~~~~d~~~~~P~---ad~ 142 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA------------PSYPGVEHVGGDMFVSIPK---ADA 142 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC------------CCCTTEEEEECCTTTCCCC---CSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc------------ccCCceEEecccccccCCC---cce
Confidence 345789999999999999999995 7789999998653 2211 1227899999998876553 466
Q ss_pred EEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 230 IHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 230 Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
++....++ .+.+++++.|+|||++++.
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 66666653 4568899999999999884
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.09 E-value=4.9e-06 Score=67.73 Aligned_cols=97 Identities=21% Similarity=0.280 Sum_probs=73.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+++|++||-+|||. |..+..+++..|. .+|+++|.+++..+.+++. +. .+++...... .
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~l----Ga--------~~~i~~~~~~~~~~v~~ 90 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFY----GA--------TDILNYKNGHIEDQVMK 90 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHH----TC--------SEEECGGGSCHHHHHHH
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhh----Cc--------cccccccchhHHHHHHH
Confidence 489999999999998 8899999998764 4799999999999998753 21 1222211111 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+|+|+-........++..+.++|+|++++ ++
T Consensus 91 ~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~-~G 127 (174)
T d1jqba2 91 LTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISN-IN 127 (174)
T ss_dssp HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEE-CC
T ss_pred HhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEE-Ee
Confidence 11224699999999888888999999999999998 44
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.00 E-value=1.1e-05 Score=65.59 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=71.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------- 219 (298)
.+++|++||-+|+|. |..+..+++..|. .+|+++|.+++.++.+++. +. . .++...-..
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l----Ga------~--~vi~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI----GA------D--LTLNRRETSVEERRKA 91 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT----TC------S--EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc----cc------e--EEEeccccchHHHHHH
Confidence 378999999999997 8899999998764 3899999999999988652 21 1 122111110
Q ss_pred --CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 --GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 --~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......+|+|+.....+...+...+.|++||++++ ++
T Consensus 92 i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~-~G 131 (182)
T d1vj0a2 92 IMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSV-AG 131 (182)
T ss_dssp HHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEE-CC
T ss_pred HHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEE-Ee
Confidence 011234699999888888888999999999999976 44
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.8e-05 Score=63.64 Aligned_cols=102 Identities=20% Similarity=0.115 Sum_probs=74.8
Q ss_pred HHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
++... +++|++||-+|+|+ |..+..+++..|. .+|+++|.+++.++.|++. +. + .++..+....
T Consensus 19 ~~~~~--~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~----Ga------~--~~~~~~~~~~ 83 (171)
T d1pl8a2 19 CRRGG--VTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI----GA------D--LVLQISKESP 83 (171)
T ss_dssp HHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----TC------S--EEEECSSCCH
T ss_pred HHHhC--CCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh----CC------c--cccccccccc
Confidence 44444 88999999999998 7788888888764 4899999999999998653 21 1 1222221110
Q ss_pred C--------CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 221 W--------PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~--------~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
. .....+|+|+.....+...+...+.+++||++++ ++.
T Consensus 84 ~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~-~G~ 129 (171)
T d1pl8a2 84 QEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVL-VGL 129 (171)
T ss_dssp HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE-CSC
T ss_pred ccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEE-Eec
Confidence 0 0124689999999988899999999999999988 443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.97 E-value=1.1e-05 Score=65.38 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=72.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++||-+|+|. |..+..+++..+. ..++++|.+++.++.+++. +. .+++..+..+..
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~----Ga--------~~~i~~~~~~~~~~i~~ 91 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL----GA--------THVINSKTQDPVAAIKE 91 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH----TC--------SEEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHc----CC--------eEEEeCCCcCHHHHHHH
Confidence 388999999999987 7788888888765 5788999999999998753 21 123332221110
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+.||+|+-........+...+.++|+|++++
T Consensus 92 ~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 92 ITDGGVNFALESTGSPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp HTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEE
T ss_pred HcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEE
Confidence 0125799999998888889999999999999987
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=3.7e-06 Score=67.81 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=68.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC-CCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK-GWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~-~~~~~ 224 (298)
.+++|++||.+|+|. |..+..+++..| .+|+++|.+++.++.+++. +. + .++.. +..+ .....
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~l----Ga------~--~~i~~~~~~~~~~~~~ 89 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKM----GA------D--HYIATLEEGDWGEKYF 89 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH----TC------S--EEEEGGGTSCHHHHSC
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhcc----CC------c--EEeeccchHHHHHhhh
Confidence 489999999999996 888899998876 5899999999999988753 21 1 22221 1111 00122
Q ss_pred CCccEEEECCCCc--hhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.||.|+...... ...+...+.|+|+|++++ ++-
T Consensus 90 ~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~-~G~ 125 (168)
T d1piwa2 90 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVS-ISI 125 (168)
T ss_dssp SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEE-CCC
T ss_pred cccceEEEEecCCccchHHHHHHHhhccceEEE-ecc
Confidence 5799998764432 235678899999999987 553
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.86 E-value=5e-05 Score=61.54 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=74.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++||-+|||. |..+..+++..|. .+|+.+|.+++..+.|++. +. . .++.....+..
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~----Ga------~--~~i~~~~~~~~~~~~~ 91 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKAL----GA------T--DCLNPRELDKPVQDVI 91 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHT----TC------S--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHh----CC------C--cccCCccchhhhhhhH
Confidence 489999999999998 8999999999864 5899999999998888753 11 1 22221111111
Q ss_pred --CCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEECCC
Q 022372 222 --PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVGNI 260 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~~~ 260 (298)
.....+|+++-....+...+...+.+++| |++++ ++..
T Consensus 92 ~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~-vG~~ 132 (174)
T d1e3ia2 92 TELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTV-VGAK 132 (174)
T ss_dssp HHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEE-CCCS
T ss_pred hhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEe-cCCC
Confidence 11257999999999999999999999996 99988 5543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.83 E-value=2.7e-05 Score=70.88 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCc---------cCCCCEEEEEcCCCCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL---------LKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~---------l~~~~v~~~~gD~~~~~ 221 (298)
.+.+|||..||+|..++..+...+ ..+|++.|+++++++.+++|++.++.... ....++.+.+.|.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 467999999999999998777654 36899999999999999999998865311 11134566666654322
Q ss_pred C-CCCCccEEEECCCCc--hhHHHHHhccccCcEEEEEECC
Q 022372 222 P-EFAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ~-~~~~fD~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
. ....||+|..++--. ...+.+.+.++.||.|.++..+
T Consensus 124 ~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1 235799999997433 3558888999999999997654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.78 E-value=5.3e-05 Score=60.89 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=71.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-----GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-----~~ 221 (298)
.++||++||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.- ...++..+... ..
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g------------a~~~i~~~~~~~~~~~~~ 95 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG------------ADHVVDARRDPVKQVMEL 95 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT------------CSEEEETTSCHHHHHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc------------cceeecCcccHHHHHHHh
Confidence 478999999999998 7777888887665 58999999999888887531 11233322110 00
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.....+|+|+.........+...+.|++||++++ ++
T Consensus 96 ~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~-~G 131 (172)
T d1h2ba2 96 TRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLII-VG 131 (172)
T ss_dssp TTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEE-CC
T ss_pred hCCCCceEEEEecCcchHHHHHHHHHhCCCEEEE-Ee
Confidence 1224699999999988888999999999999997 44
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.75 E-value=3.8e-05 Score=61.21 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+.... +++|++||-+|+|. |..+..+++..| .+|+++|.+++.++.+++. +. . .++..+..+
T Consensus 19 al~~~~--~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~----Ga------~--~~i~~~~~~ 82 (166)
T d1llua2 19 GLKQTN--ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKL----GA------S--LTVNARQED 82 (166)
T ss_dssp HHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT----TC------S--EEEETTTSC
T ss_pred HHHHhC--CCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhcc----Cc------c--ccccccchh
Confidence 344444 89999999999998 888899999876 6899999999999888642 21 1 223222211
Q ss_pred CCC----CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 220 GWP----EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 220 ~~~----~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
... ....+|.++.........+...+.|++||++++ ++.
T Consensus 83 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~-~G~ 125 (166)
T d1llua2 83 PVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIAL-VGL 125 (166)
T ss_dssp HHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEE-CCC
T ss_pred HHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEE-EEe
Confidence 100 012356666666666777889999999999987 554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=2.9e-05 Score=62.22 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=70.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-CCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-~~~~~~ 225 (298)
.+++|++||-+|+|. |.++..+++..| .+++++|.+++..+.+++. +. + .++...... ......
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~l----Ga------d--~~i~~~~~~~~~~~~~ 92 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKAL----GA------D--EVVNSRNADEMAAHLK 92 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHH----TC------S--EEEETTCHHHHHTTTT
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhcc----CC------c--EEEECchhhHHHHhcC
Confidence 489999999999987 889999999875 5788999999888877642 21 1 222211111 112235
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++.........+...+.++++|++++
T Consensus 93 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~ 122 (168)
T d1uufa2 93 SFDFILNTVAAPHNLDDFTTLLKRDGTMTL 122 (168)
T ss_dssp CEEEEEECCSSCCCHHHHHTTEEEEEEEEE
T ss_pred CCceeeeeeecchhHHHHHHHHhcCCEEEE
Confidence 799999988888888889999999999998
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.72 E-value=6.8e-05 Score=61.84 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=67.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------ 220 (298)
.+++|++||.+|||. |..+..+++..+. .+|+++|.+++.++.|++. + --.++.....+.
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~----G--------a~~~~~~~~~~~~~~i~~ 88 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ----G--------FEIADLSLDTPLHEQIAA 88 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----T--------CEEEETTSSSCHHHHHHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhc----c--------ccEEEeCCCcCHHHHHHH
Confidence 489999999999998 7788888887654 6999999999999998754 1 112221111110
Q ss_pred CCCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++-.... ....+...+.++|||++++
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~ 138 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 138 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence 1122468998866542 3467889999999999987
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.64 E-value=0.00015 Score=58.43 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=68.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++||-+|+|. |..+..+++..+. .+|+++|.+++.++.|++. +. ..++.....+.+
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~l----Ga--------~~~i~~~~~d~~~~~~~ 90 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIEL----GA--------TECLNPKDYDKPIYEVI 90 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHT----TC--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHc----CC--------cEEEcCCCchhHHHHHH
Confidence 489999999999998 6777888888765 5899999999999999753 21 122221111111
Q ss_pred --CCCCCccEEEECCCCchhHHHHHhcccc-CcEEEE
Q 022372 222 --PEFAPYDAIHVGAAAPEIPQALIDQLKP-GGRMVI 255 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~~l~~~l~~~Lkp-GG~Lvi 255 (298)
...+.+|.++.........+.....+++ +|++++
T Consensus 91 ~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 91 CEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp HHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred HHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEE
Confidence 1224699999998888888777777765 588887
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.61 E-value=7.2e-05 Score=59.79 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=71.1
Q ss_pred HHHHHccCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 142 LQLLEENLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
+.... ++++++||-+|+ |. |..+..+++..+. .+|+++|.+++..+.+++. +. . .++..+..+
T Consensus 20 l~~~~--~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~----Ga------~--~~i~~~~~~ 84 (170)
T d1jvba2 20 VRKAS--LDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA----GA------D--YVINASMQD 84 (170)
T ss_dssp HHHTT--CCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH----TC------S--EEEETTTSC
T ss_pred HHHhC--CCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHc----CC------c--eeeccCCcC
Confidence 44444 889999999996 43 6677777777654 5899999999998888753 21 1 223222221
Q ss_pred C------CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 G------WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~------~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
. ......||+|+.........+...+.++|||++++
T Consensus 85 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 85 PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp HHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEE
T ss_pred HHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEE
Confidence 1 01225699999998888888899999999999987
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.0001 Score=59.18 Aligned_cols=96 Identities=23% Similarity=0.203 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|++||..|+ | .|..+..+++..| .+|++++.+++..+.+++ .+. + .++.....+
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga------~--~vi~~~~~~~~~~i~ 90 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ----NGA------H--EVFNHREVNYIDKIK 90 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTSTTHHHHHH
T ss_pred CCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccc----cCc------c--cccccccccHHHHhh
Confidence 4789999999996 4 3788889998876 689999989888877764 222 2 222211111
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.......+|+|+.... ....+...+.|+|+|+++. ++.
T Consensus 91 ~~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~-~G~ 128 (174)
T d1yb5a2 91 KYVGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIV-VGS 128 (174)
T ss_dssp HHHCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEE-CCC
T ss_pred hhhccCCceEEeeccc-HHHHHHHHhccCCCCEEEE-Eec
Confidence 0112357999998776 4567888899999999997 554
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.53 E-value=0.00014 Score=64.70 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=61.7
Q ss_pred ccChHHHHHHHHHHHHcc----CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022372 131 TISAPHMHATCLQLLEEN----LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 206 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~----l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~ 206 (298)
.+..+.+...+++.+.-. -..+..|||||.|.|.+|..|.+..++ .+|+++|.++.+.+..++.+..
T Consensus 19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~-------- 89 (322)
T d1i4wa_ 19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEG-------- 89 (322)
T ss_dssp CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTT--------
T ss_pred ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccC--------
Confidence 345677888888887511 124678999999999999999987544 5899999999999988776432
Q ss_pred CCCEEEEEcCCCC
Q 022372 207 EGSLSVHVGDGRK 219 (298)
Q Consensus 207 ~~~v~~~~gD~~~ 219 (298)
++++++++|+..
T Consensus 90 -~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 90 -SPLQILKRDPYD 101 (322)
T ss_dssp -SSCEEECSCTTC
T ss_pred -CCcEEEeCchhh
Confidence 678999999864
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.49 E-value=9.3e-05 Score=63.49 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=62.3
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc---CCCCEEEEEcCCCCCCCC-CCCcc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWPE-FAPYD 228 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l---~~~~v~~~~gD~~~~~~~-~~~fD 228 (298)
.+|||.-+|.|..+..+|... .+|+++|.++.+....++.+.+....... -..+++++++|..+.... ...||
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 489999999999999999984 68999999998888777766554321000 014899999997664432 35799
Q ss_pred EEEECCCCc
Q 022372 229 AIHVGAAAP 237 (298)
Q Consensus 229 ~Ii~~~~~~ 237 (298)
+|+.++.++
T Consensus 167 vIYlDPMFp 175 (250)
T d2oyra1 167 VVYLDPMFP 175 (250)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999999874
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.46 E-value=0.00022 Score=56.40 Aligned_cols=100 Identities=23% Similarity=0.219 Sum_probs=69.2
Q ss_pred HHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+.... +++|++||-.|+|+ |..+..+++..+ .+|+++|.+++.++.+++. +. . .++. ...+.
T Consensus 20 l~~~~--~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~----Ga------~--~~~~-~~~~~ 82 (168)
T d1rjwa2 20 LKVTG--AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKEL----GA------D--LVVN-PLKED 82 (168)
T ss_dssp HHHHT--CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT----TC------S--EEEC-TTTSC
T ss_pred HHHhC--CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhc----Cc------c--eecc-cccch
Confidence 44444 89999999999998 777788888765 5899999999998888652 21 1 1121 11111
Q ss_pred CC-----CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 221 WP-----EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~-----~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.. ....+|.++.+.......+...+.|+|||++++ ++.
T Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~-~g~ 125 (168)
T d1rjwa2 83 AAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVL-VGL 125 (168)
T ss_dssp HHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEE-CCC
T ss_pred hhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEe-ccc
Confidence 10 012356666677777888999999999999988 443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.38 E-value=0.00064 Score=54.10 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=71.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-CCC----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-KGW---- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-~~~---- 221 (298)
.++||++||-.|+|. |.++..+++..+. ..|+++|.+++..+.+++. +. -.++..+-. +..
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~l----Ga--------~~~i~~~~~~~~~~~~~ 91 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF----GA--------TECINPQDFSKPIQEVL 91 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH----TC--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHh----CC--------cEEEeCCchhhHHHHHH
Confidence 489999999999986 6777888888764 5899999999999888753 21 122222111 110
Q ss_pred --CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 222 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+.+|+|+.........+.....+++||.+++-.+
T Consensus 92 ~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~ 130 (176)
T d2fzwa2 92 IEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG 130 (176)
T ss_dssp HHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEe
Confidence 1125699999999888899999999999988776443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.37 E-value=0.00046 Score=55.64 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=66.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++|+-+|+|. |..+..+++..+. .+|+++|.+++.++.|++.=. -.++...-.+..
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA------------~~~in~~~~~~~~~~~~ 92 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGA------------TECISPKDSTKPISEVL 92 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTC------------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCC------------cEEECccccchHHHHHH
Confidence 488999999999998 6677788887654 589999999999999976521 122221111110
Q ss_pred --CCCCCccEEEECCCCchhHHHHHhcc-ccCcEEEE
Q 022372 222 --PEFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVI 255 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi 255 (298)
.....+|+++.........+.....+ +.+|++++
T Consensus 93 ~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 93 SEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp HHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEE
T ss_pred HHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEE
Confidence 12246999998888877776666655 55588887
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.27 E-value=0.00043 Score=59.02 Aligned_cols=104 Identities=12% Similarity=0.060 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|+|+|||.|..+.+++... +...|.|+++--+..+. .-....+..+-+++...+.....++ .+.
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~-------P~~~~~~~~ni~~~~~~~dv~~l~~-~~~ 133 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-------PIPMSTYGWNLVRLQSGVDVFFIPP-ERC 133 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-------CCCCCSTTGGGEEEECSCCTTTSCC-CCC
T ss_pred CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccC-------CccccccccccccchhhhhHHhcCC-CcC
Confidence 47888999999999999999999773 33577777763221000 0000111223355555554433333 689
Q ss_pred cEEEECCCCc------------hhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|+|+.+-. ++.+-+.++|+|||-+++-|=.+
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 9999997531 23355668999999999976543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.13 E-value=0.0014 Score=52.30 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=68.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCC----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGW---- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~---- 221 (298)
.+++|++||-+|+|. |...+.+++..+. .+|+++|.+++..+.+++.- . ..++. .+..+..
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~a~~~G----a--------~~~i~~~~~~~~~~~~~ 91 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKEVG----A--------TECVNPQDYKKPIQEVL 91 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTT----C--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCC-ceEEeecCcHHHHHHHHHhC----C--------eeEEecCCchhHHHHHH
Confidence 489999999999987 4566777777543 69999999999999887642 1 12222 1211110
Q ss_pred --CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 222 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+.+|+|+.....+...+.....+++||..++..+
T Consensus 92 ~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 92 TEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp HHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred HHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEec
Confidence 1225799999999999898888888988754444343
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00091 Score=53.35 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=67.3
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
.+++|++||-.|+|+ |.....+++..| .+|++++.+++..+.+++. +. + +++...-.+.
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~l----Ga------~--~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA----GA------W--QVINYREEDLVERLK 90 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH----TC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhc----CC------e--EEEECCCCCHHHHHH
Confidence 478999999997765 678888999876 6999999999999888653 21 1 2232211110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
......+|+|+.... .+......+.++++|++++.
T Consensus 91 ~~t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 91 EITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeec
Confidence 112357898877765 45678899999999998773
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.01 E-value=0.0038 Score=49.95 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=74.5
Q ss_pred cChHHHHHH-HHHHHHccCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 132 ISAPHMHAT-CLQLLEENLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 132 is~p~~~~~-~l~~L~~~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+.-|.+.++ .+.... ++++|++||-.|+++ |..+..+++..| .+|+++..+++..+.+++. +. +
T Consensus 10 lg~~glTA~~al~~~~-~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~----Ga------~ 76 (182)
T d1v3va2 10 IGMPGLTAYFGLLEVC-GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQI----GF------D 76 (182)
T ss_dssp TSHHHHHHHHHHHTTT-CCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT----TC------S
T ss_pred HhhHHHHHHHHHHHHh-CCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhh----hh------h
Confidence 334444554 232222 488999999999876 678888999876 6999999999888777653 21 1
Q ss_pred CEEEEEcCCCCC------CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 209 SLSVHVGDGRKG------WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 209 ~v~~~~gD~~~~------~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++..+.... ......+|+|+-... .+..+...+.|++||+++. ++.
T Consensus 77 --~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~-~G~ 129 (182)
T d1v3va2 77 --AAFNYKTVNSLEEALKKASPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAI-CGA 129 (182)
T ss_dssp --EEEETTSCSCHHHHHHHHCTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEE-CCC
T ss_pred --hhcccccccHHHHHHHHhhcCCCceeEEecC-chhhhhhhhhccCCCeEEe-ecc
Confidence 2222221111 112356999988776 4677899999999999997 453
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.99 E-value=0.00023 Score=57.12 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
.+++|++||-.|. |. |..+..+++..| .+|++++.+++..+.+++ .+. +.+ +-..+.........
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~----lGa------~~~-i~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGA------EEA-ATYAEVPERAKAWG 90 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTC------SEE-EEGGGHHHHHHHTT
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccc----ccc------cee-eehhhhhhhhhccc
Confidence 4899999999995 44 778888999875 589999999988877764 222 222 11111111111235
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+|+-... ...+...+.|+|+|+++.
T Consensus 91 g~D~v~d~~G--~~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 91 GLDLVLEVRG--KEVEESLGLLAHGGRLVY 118 (171)
T ss_dssp SEEEEEECSC--TTHHHHHTTEEEEEEEEE
T ss_pred cccccccccc--hhHHHHHHHHhcCCcEEE
Confidence 6999987544 345778899999999986
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.0026 Score=50.67 Aligned_cols=95 Identities=22% Similarity=0.206 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----- 220 (298)
++++|++||-.|. |. |..+..+++..+ .+++++..+++..+.+++ .+. . .++.....+.
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~----~Ga------~--~vi~~~~~~~~~~v~ 87 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LGV------E--YVGDSRSVDFADEIL 87 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TCC------S--EEEETTCSTHHHHHH
T ss_pred CCCCCCEEEEECCCCCcccccchhhcccc--ccceeeeccccccccccc----ccc------c--ccccCCccCHHHHHH
Confidence 4789999999884 33 788899998876 588888888877777653 222 2 2222111110
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......||+|+....- +..+.+.+.|+++|+++. ++
T Consensus 88 ~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~-~G 124 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIE-LG 124 (183)
T ss_dssp HHTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEE-CS
T ss_pred HHhCCCCEEEEEecccc-hHHHHHHHHhcCCCEEEE-Ec
Confidence 0123579999988775 567788999999999987 44
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.81 E-value=0.0034 Score=49.66 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=67.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.+++|++|+-+|+|. |..+..+++..+. ..|+++|.+++.++.+++. +. -+++...-.+..
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~~----GA--------d~~in~~~~~~~~~~~~ 91 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKVF----GA--------TDFVNPNDHSEPISQVL 91 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHT----TC--------CEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhh-chheeecchHHHHHHHHHc----CC--------cEEEcCCCcchhHHHHH
Confidence 489999999999998 4555666666543 6899999999999888652 21 123322211111
Q ss_pred --CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 222 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.....+|+++-..............+++||..++-++.
T Consensus 92 ~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 92 SKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW 131 (175)
T ss_dssp HHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred HhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEe
Confidence 01246999999998888888888887776555543443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.65 E-value=0.00083 Score=53.84 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
+..+|+-+|+|. |..++..|..+| ..|+.+|.+++.++..+..+.. +++....+-......-...|+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~aDi 98 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADL 98 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSE
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc----------cceeehhhhhhHHHhhccCcE
Confidence 357999999998 888899998876 6999999999999887765432 344444332111111135799
Q ss_pred EEECCCCc-----h-hHHHHHhccccCcEEEE
Q 022372 230 IHVGAAAP-----E-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~~-----~-l~~~l~~~LkpGG~Lvi 255 (298)
|+...-.+ + +.+++.+.+|||.++|=
T Consensus 99 vI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 99 LIGAVLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp EEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred EEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 98887653 2 34899999999998863
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.007 Score=48.54 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
..++|++||--|++. |..+..+++..| .+|+++-.+++..+.+++. +....+...+.. .+.. .....+
T Consensus 28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~G--a~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~---~~~~-~~~~~~ 97 (176)
T d1xa0a2 28 LTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVL----GAKEVLAREDVM---AERI-RPLDKQ 97 (176)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHT----TCSEEEECC-------------CCSC
T ss_pred CCCCCCEEEEEeccchHHHHHHHHHHHcC--CceEEecCchHHHHHHHhc----ccceeeecchhH---HHHH-HHhhcc
Confidence 356789999999755 678889998876 6899999999988888643 221001111100 0000 112335
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.||+|+-... ....+...+.|++||+++.
T Consensus 98 gvD~vid~vg-g~~~~~~l~~l~~~Griv~ 126 (176)
T d1xa0a2 98 RWAAAVDPVG-GRTLATVLSRMRYGGAVAV 126 (176)
T ss_dssp CEEEEEECST-TTTHHHHHHTEEEEEEEEE
T ss_pred CcCEEEEcCC-chhHHHHHHHhCCCceEEE
Confidence 7998877655 4577888999999999997
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.94 E-value=0.011 Score=49.00 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=45.0
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~ 197 (298)
+..++++.. -.+|+.|||.=+|+|..+....++ + .+.+|+|++++.++.|++++.
T Consensus 201 L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~-~--R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 201 LIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHc
Confidence 445555554 588999999999999987766665 4 699999999999999999875
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.94 E-value=0.0096 Score=47.81 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEc--CC-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCCCC
Q 022372 148 NLKPGMHALDIG--SG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRKGW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG--~G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~~~ 221 (298)
.+++|.+||-+. +| .|..+..+|+..| .+|+++-.+++..+...+.+++.+.. . ++.. +..+..
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad------~--vi~~~~~~~~~~~ 94 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGAT------Q--VITEDQNNSREFG 94 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCS------E--EEEHHHHHCGGGH
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhcccc------E--EEeccccchhHHH
Confidence 478998888883 33 3677888999876 57887755555555444455554432 2 2221 111100
Q ss_pred --------CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 222 --------PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 --------~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.....+|+++-... ........+.|+++|+++. ++
T Consensus 95 ~~v~~~~~~~g~~vdvv~D~vg-~~~~~~~~~~l~~~G~~v~-~G 137 (189)
T d1gu7a2 95 PTIKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLT-YG 137 (189)
T ss_dssp HHHHHHHHHHTCCEEEEEESSC-HHHHHHHHHTSCTTCEEEE-CC
T ss_pred HHHHHHHhhccCCceEEEECCC-cchhhhhhhhhcCCcEEEE-EC
Confidence 01246888886544 4456778899999999986 44
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.61 E-value=0.0054 Score=49.59 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC---EEEEEcCCCCC---CCC-
Q 022372 152 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS---LSVHVGDGRKG---WPE- 223 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~---v~~~~gD~~~~---~~~- 223 (298)
..+||-+|+|. |..++..|..+| .+|+.+|.+++.++..++...+.-. +.... .+-..+..... +..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~---~~~~~~~~~~~~~gyA~~~s~~~~~~ 103 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFIT---VDDEAMKTAETAGGYAKEMGEEFRKK 103 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECC---C-----------------------CC
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEE---EeccccccccccccchhhcCHHHHHH
Confidence 46999999998 888888888876 6999999999998888764322100 00000 00000000000 000
Q ss_pred --------CCCccEEEECCCCc-----h-hHHHHHhccccCcEEEE
Q 022372 224 --------FAPYDAIHVGAAAP-----E-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 --------~~~fD~Ii~~~~~~-----~-l~~~l~~~LkpGG~Lvi 255 (298)
-...|+|+...-.+ . +.+++.+.+|||.++|=
T Consensus 104 ~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 104 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 12579998887653 2 44899999999998863
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.44 E-value=0.024 Score=47.43 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
+..++++.. -.+|+.|||-=+|+|..+.+..++ + .+.+|+|++++..+.|++++...
T Consensus 196 L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~l-g--R~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 196 VIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHh
Confidence 455555554 579999999999999987777766 4 69999999999999999999763
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.065 Score=42.58 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=61.1
Q ss_pred cCCCC--CEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---
Q 022372 148 NLKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--- 220 (298)
Q Consensus 148 ~l~~g--~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--- 220 (298)
.+++| ++||--|+ | .|..+..+|+..|. ..|+++..+++......+.+ +. + .++...-.+.
T Consensus 25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~~---ga------d--~vi~~~~~~~~~~ 92 (187)
T d1vj1a2 25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSEL---GF------D--AAVNYKTGNVAEQ 92 (187)
T ss_dssp CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHHS---CC------S--EEEETTSSCHHHH
T ss_pred CCCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhcc---cc------e--EEeeccchhHHHH
Confidence 36766 78999884 4 48999999998865 36777777766555443332 11 1 2222221110
Q ss_pred ---CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 ---WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ---~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+ ..+|+|+-... .+..+...+.|+++|+++.
T Consensus 93 ~~~~~~-~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 93 LREACP-GGVDVYFDNVG-GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp HHHHCT-TCEEEEEESSC-HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHhc-cCceEEEecCC-chhHHHHhhhccccccEEE
Confidence 112 46999987766 4567888999999999986
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.39 E-value=0.013 Score=49.89 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
.+..+++... -++|+.|||.=+|+|..+....++ + .+.+|+|++++.++.|++++.+
T Consensus 238 ~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~l-g--R~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERE-S--RKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHHHh
Confidence 4556666655 678999999999999987776665 4 6999999999999999988754
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.94 E-value=0.043 Score=43.20 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-C--CCCC
Q 022372 149 LKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-K--GWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-~--~~~~ 223 (298)
.+++.+||--|++. |..+..+|+..| .+|+++..+++..+.+++. +. +.+ +...+.. + ....
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~l----Ga------d~v-i~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQL----GA------SEV-ISREDVYDGTLKALS 87 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHH----TC------SEE-EEHHHHCSSCCCSSC
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHhh----cc------cce-Eeccchhchhhhccc
Confidence 44567899888544 788899999987 6899999998888887543 22 222 1112211 1 1122
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+|+|+-.-. ....++..+.|+++|++++ ++.
T Consensus 88 ~~gvd~vid~vg-g~~~~~~~~~l~~~G~iv~-~G~ 121 (167)
T d1tt7a2 88 KQQWQGAVDPVG-GKQLASLLSKIQYGGSVAV-SGL 121 (167)
T ss_dssp CCCEEEEEESCC-THHHHHHHTTEEEEEEEEE-CCC
T ss_pred CCCceEEEecCc-HHHHHHHHHHhccCceEEE-eec
Confidence 357999877765 4566789999999999987 554
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.034 Score=44.30 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCCCC
Q 022372 151 PGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~~~ 226 (298)
++.+||-.|... |..+..+++..| .+|+++..+++..+.+++. +. + .++.-+..+ .......
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~~l----Ga------d--~vi~~~~~~~~~~l~~~~ 96 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSL----GA------S--RVLPRDEFAESRPLEKQV 96 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHH----TE------E--EEEEGGGSSSCCSSCCCC
T ss_pred CCCcEEEEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHHhh----cc------c--cccccccHHHHHHHHhhc
Confidence 345788777543 678899999876 6899999999988777542 21 1 222222111 1112356
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|.++ +.+.........+.|+++|+++. ++.
T Consensus 97 ~~~vv-D~Vgg~~~~~~l~~l~~~Griv~-~G~ 127 (177)
T d1o89a2 97 WAGAI-DTVGDKVLAKVLAQMNYGGCVAA-CGL 127 (177)
T ss_dssp EEEEE-ESSCHHHHHHHHHTEEEEEEEEE-CCC
T ss_pred CCeeE-EEcchHHHHHHHHHhccccceEe-ecc
Confidence 78875 55666778899999999999998 443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=93.72 E-value=0.059 Score=45.35 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcC---C------------------------------------CcEEEEEeCCHHHHH
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVG---P------------------------------------QGRAVGVEHIPELVV 190 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g---~------------------------------------~~~V~giD~s~~~l~ 190 (298)
..+..++|--||||.+.+..|-+.. | ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 3445799999999998877665321 0 023578888888888
Q ss_pred HH---HHHHHHhccCCccCCCCEEEEEcCCCCCCC-----CCCCccEEEECCCC---------------chhHHHHHhcc
Q 022372 191 SS---IQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-----EFAPYDAIHVGAAA---------------PEIPQALIDQL 247 (298)
Q Consensus 191 ~A---~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-----~~~~fD~Ii~~~~~---------------~~l~~~l~~~L 247 (298)
.| ++|+...++. ..+++...|..+..+ ....+++|++|.+. ..+...+.+.+
T Consensus 129 ~A~~~r~n~~~Agl~-----~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 129 AARRLRERLTAEGGA-----LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHHTTSS-----CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCC-----ceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccC
Confidence 77 4577777765 678999999875321 22467999999985 11223455667
Q ss_pred ccCcEEEEE
Q 022372 248 KPGGRMVIP 256 (298)
Q Consensus 248 kpGG~Lvi~ 256 (298)
.....++++
T Consensus 204 p~~s~~~it 212 (249)
T d1o9ga_ 204 PAHAVIAVT 212 (249)
T ss_dssp CTTCEEEEE
T ss_pred CCCcEEEEe
Confidence 555555553
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.32 E-value=0.42 Score=41.90 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCccccC-CCccChHHHHHHHHHHH--------Hc-cCC
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGY-NATISAPHMHATCLQLL--------EE-NLK 150 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~~~aY~d~~~~~g~-~~~is~p~~~~~~l~~L--------~~-~l~ 150 (298)
...+.+.+.+.|.|+=.+..+.-.--|..- .|.. ...+|. |-.+++|++...+-+.+ .. ..+
T Consensus 7 ~~~i~~~i~~~G~i~f~~fM~~~LY~p~~G-------YY~~-~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~ 78 (365)
T d1zkda1 7 ATEIKRLIKAAGPMPVWRYMELCLGHPEHG-------YYVT-RDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEP 78 (365)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHHHCTTTC-------TTTC-C--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHcCCCCcc-------ccCC-CCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCC
Confidence 345556677788765333333222223222 2332 335554 45677777543322222 11 122
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC------CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g------~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
+..+|+|+|+|+|.++..+.+.+. ...+++-+|.++.+.+.-++++... .++.+.. +.. ..+.
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~--------~~i~w~~-~~~-~~~~- 147 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--------RNIHWHD-SFE-DVPE- 147 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--------SSEEEES-SGG-GSCC-
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc--------ccceecc-Chh-hccc-
Confidence 335799999999999988876653 2347899999999877776665421 3555432 222 1221
Q ss_pred CCccEEEECCCCchhH
Q 022372 225 APYDAIHVGAAAPEIP 240 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~ 240 (298)
..-+|+++..+..+|
T Consensus 148 -~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 148 -GPAVILANEYFDVLP 162 (365)
T ss_dssp -SSEEEEEESSGGGSC
T ss_pred -CCeEEEecccCcccc
Confidence 225778887776666
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.25 Score=41.12 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCcHH---HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGYL---TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~---t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
+|+.||-.|+++|-- +..|++. +.+|+..+.+++.++.+.+.+...+.. .++.++..|..+..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~---G~~Vv~~~r~~~~l~~~~~~l~~~~~~-----~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ---GLKVVGCARTVGNIEELAAECKSAGYP-----GTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEEccCCCHHHHHHHH
Confidence 367899999887642 3333333 369999999999999988887765432 47888899987621
Q ss_pred ----CCCCCccEEEECCCC
Q 022372 222 ----PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~ 236 (298)
...+..|+++.++..
T Consensus 81 ~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHCCCSEEEECCCC
T ss_pred HHHHHhcCCCCEEEecccc
Confidence 112578999888764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.58 E-value=0.21 Score=38.45 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=54.6
Q ss_pred EEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 154 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 154 ~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
+|+-||+|. |. ++..|.+. +...+|+++|.+++.++.+++.- .+.....+... ......|+|+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~~------------~~~~~~~~~~~--~~~~~~dlIi 67 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDLG------------IIDEGTTSIAK--VEDFSPDFVM 67 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHTT------------SCSEEESCGGG--GGGTCCSEEE
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHhh------------cchhhhhhhhh--hhcccccccc
Confidence 588899986 43 44445444 45568999999999999887541 11111112111 1113579998
Q ss_pred ECCCCch---hHHHHHhccccCcEEEEEECC
Q 022372 232 VGAAAPE---IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 232 ~~~~~~~---l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+... +.+++.+.++++. +++.+..
T Consensus 68 la~p~~~~~~vl~~l~~~~~~~~-ii~d~~s 97 (171)
T d2g5ca2 68 LSSPVRTFREIAKKLSYILSEDA-TVTDQGS 97 (171)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTTC-EEEECCS
T ss_pred ccCCchhhhhhhhhhhccccccc-ccccccc
Confidence 8877643 4466777787764 4444544
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.52 E-value=0.12 Score=37.43 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEE--eCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGV--EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~gi--D~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.|.+||-+|.|. |.--+......| .+|+.+ +.+++....+. ..+++++........ ...+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~d--l~~~ 73 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWAN-------------EGMLTLVEGPFDETL--LDSC 73 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHT-------------TTSCEEEESSCCGGG--GTTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCChHHHHHHh-------------cCCceeeccCCCHHH--hCCC
Confidence 468999999987 432222222223 455554 55555444332 146777776655432 2468
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++|+....-+++-+.+.+..|+.|.++=.+..
T Consensus 74 ~lv~~at~d~~~n~~i~~~a~~~~ilVNv~D~ 105 (113)
T d1pjqa1 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVDA 105 (113)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred cEEeecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence 99998888888888999999999998754433
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.33 E-value=0.32 Score=37.21 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred CEEEEEcCCC-c-HHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G-~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++|.-||+|. | .++..|.+. + .+|++.|.+++.++.+++. + .+.... +..+ .-...|+|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g--~~V~~~d~~~~~~~~a~~~----~--------~~~~~~-~~~~---~~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-G--HYLIGVSRQQSTCEKAVER----Q--------LVDEAG-QDLS---LLQTAKII 61 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T--CEEEEECSCHHHHHHHHHT----T--------SCSEEE-SCGG---GGTTCSEE
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C--CEEEEEECCchHHHHHHHh----h--------ccceee-eecc---cccccccc
Confidence 4678888875 3 344455443 2 6899999999888877542 1 111111 1111 12457999
Q ss_pred EECCCCc---hhHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAAP---EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~~---~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+...+.. ++.+++...|+++-.+ +.+.
T Consensus 62 ilavp~~~~~~vl~~l~~~l~~~~iv-~~~~ 91 (165)
T d2f1ka2 62 FLCTPIQLILPTLEKLIPHLSPTAIV-TDVA 91 (165)
T ss_dssp EECSCHHHHHHHHHHHGGGSCTTCEE-EECC
T ss_pred cccCcHhhhhhhhhhhhhhcccccce-eecc
Confidence 8876543 4556676777776655 4454
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.31 Score=40.68 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCEE-EEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 152 GMHA-LDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 152 g~~V-LDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
|++| |--|+++|. .+..|++.. ..+|+..+.+++.++.+.+.++..+ .++.++..|..+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~--g~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dvs~~~sv~~~~ 72 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLF--SGDVVLTARDVTRGQAAVQQLQAEG-------LSPRFHQLDIDDLQSIRALR 72 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS--SSEEEEEESSHHHHHHHHHHHHHTT-------CCCEEEECCTTCHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEEecCCHHHHHHHH
Confidence 5677 555655543 223344432 2689999999999999988887644 46788999987521
Q ss_pred ----CCCCCccEEEECCCCc-------------------------hhHHHHHhccccCcEEEE
Q 022372 222 ----PEFAPYDAIHVGAAAP-------------------------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~~-------------------------~l~~~l~~~LkpGG~Lvi 255 (298)
...++.|+++.++... .+.+.+...||++|+++.
T Consensus 73 ~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn 135 (275)
T d1wmaa1 73 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN 135 (275)
T ss_dssp HHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 1125799999998741 111556778899999776
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=89.51 E-value=0.46 Score=42.26 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=43.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSA 200 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~ 200 (298)
++++..++|+|+-.|..+..+++.... ..+|+++|.++...+..+++++.+.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~ 262 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT 262 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence 567889999999999999888776532 3689999999999999999987654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.30 E-value=0.59 Score=34.34 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=55.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCc
Q 022372 153 MHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 227 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~f 227 (298)
++|+-+|+ |..+..+++.+. .+..|+.+|.+++.++.+++.+ .+.++.||..+.. ..-...
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------------~~~vi~Gd~~~~~~l~~~~i~~a 66 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------------DALVINGDCTKIKTLEDAGIEDA 66 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------SSEEEESCTTSHHHHHHTTTTTC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------------hhhhccCcccchhhhhhcChhhh
Confidence 46778877 556666665442 2258999999999998876532 3568899987521 112467
Q ss_pred cEEEECCCCchh---HHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAPEI---PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~v~ 258 (298)
|.+++...-++. .....+.+.+.- ++.-+.
T Consensus 67 ~~vv~~t~~d~~N~~~~~~~k~~~~~~-iI~~~~ 99 (132)
T d1lssa_ 67 DMYIAVTGKEEVNLMSSLLAKSYGINK-TIARIS 99 (132)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCCC-EEEECS
T ss_pred hhhcccCCcHHHHHHHHHHHHHcCCce-EEEEec
Confidence 888876554432 233445566663 343333
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=88.94 E-value=1.1 Score=37.30 Aligned_cols=70 Identities=23% Similarity=0.160 Sum_probs=51.9
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~Ii 231 (298)
++|+|+=||.|.++.-+-+. |= ..+.++|+++.+.+.-+.|. + -.++.+|..+.... ....|+++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~-~~~~a~e~d~~a~~~~~~N~-----------~-~~~~~~Di~~~~~~~~~~~dll~ 66 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GF-RIICANEYDKSIWKTYESNH-----------S-AKLIKGDISKISSDEFPKCDGII 66 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TC-EEEEEEECCHHHHHHHHHHC-----------C-SEEEESCTTTSCGGGSCCCSEEE
T ss_pred CeEEEeCcCcCHHHHHHHHC-CC-EEEEEEeCCHHHHHHHHHHC-----------C-CCCccCChhhCCHhHcccccEEe
Confidence 47999999999998888766 42 35779999998888777664 2 24577888764332 24689999
Q ss_pred ECCCC
Q 022372 232 VGAAA 236 (298)
Q Consensus 232 ~~~~~ 236 (298)
.+.+.
T Consensus 67 ~g~PC 71 (324)
T d1dcta_ 67 GGPPC 71 (324)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 88875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.57 E-value=1.2 Score=36.55 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
+++.+|-.|+++| ++..+++.+. ...+|+.+|.+++.++.+.+.++..+ .++..+..|..+..
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------YESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHH
Confidence 4678888887665 5555555443 33699999999999998888876543 47888999988621
Q ss_pred --CCCCCccEEEECCCC
Q 022372 222 --PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 81 ~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 81 ILTEHKNVDILVNNAGI 97 (251)
T ss_dssp HHHHCSCCCEEEECCCC
T ss_pred HHHhcCCceeeeecccc
Confidence 123678999888764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.3 Score=41.50 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---CCCc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAPY 227 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~-~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~---~~~f 227 (298)
..+|+|+-||.|.++.-|-+. |-+. .+.++|+++.+++.-+.|. +...++.+|..+.... ...+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----------~~~~~~~~di~~~~~~~~~~~~~ 69 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----------PHTQLLAKTIEGITLEEFDRLSF 69 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----------TTSCEECSCGGGCCHHHHHHHCC
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----------CCCCcccCchhhCCHhHcCCCCc
Confidence 368999999999988877665 4322 4779999999888777664 2344566666543211 1258
Q ss_pred cEEEECCCC
Q 022372 228 DAIHVGAAA 236 (298)
Q Consensus 228 D~Ii~~~~~ 236 (298)
|+++.+.++
T Consensus 70 Dll~ggpPC 78 (343)
T d1g55a_ 70 DMILMSPPC 78 (343)
T ss_dssp SEEEECCC-
T ss_pred cEEEeeccc
Confidence 999888875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.94 E-value=1.7 Score=35.30 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------C
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------W 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------~ 221 (298)
.|+++|-.|+++|- .+..|++. +.+|+.+|.+++.++...+.+ +++..+..|..+. .
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~---G~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~ 71 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT---GARVVAVSRTQADLDSLVREC-----------PGIEPVCVDLGDWEATERAL 71 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhc-----------CCCeEEEEeCCCHHHHHHHH
Confidence 57899999988763 33334443 269999999998877665432 3567778887652 1
Q ss_pred CCCCCccEEEECCCC
Q 022372 222 PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 72 ~~~g~iDilVnnAg~ 86 (244)
T d1pr9a_ 72 GSVGPVDLLVNNAAV 86 (244)
T ss_dssp TTCCCCCEEEECCCC
T ss_pred HHhCCceEEEecccc
Confidence 233679999888754
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=83.80 E-value=1.2 Score=37.46 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~ 229 (298)
.+.+|||+=||.|.++.-|.+. |- ..+.++|+++.+++.-+.|... ..++|..+... ....+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~-~~v~a~e~d~~a~~~~~~N~~~-------------~~~~Di~~~~~~~~~~~Dl 74 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GA-ECVYSNEWDKYAQEVYEMNFGE-------------KPEGDITQVNEKTIPDHDI 74 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TC-EEEEEECCCHHHHHHHHHHHSC-------------CCBSCGGGSCGGGSCCCSE
T ss_pred CCCeEEEECccccHHHHHHHHC-CC-eEEEEEeCCHHHHHHHHHHCCC-------------CCcCchhcCchhhcceeee
Confidence 5689999999999999888765 42 3577899999999988877632 11356554322 1246899
Q ss_pred EEECCCC
Q 022372 230 IHVGAAA 236 (298)
Q Consensus 230 Ii~~~~~ 236 (298)
++.+.++
T Consensus 75 l~ggpPC 81 (327)
T d2c7pa1 75 LCAGFPC 81 (327)
T ss_dssp EEEECCC
T ss_pred eeccccc
Confidence 9888875
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=83.15 E-value=2.1 Score=34.96 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--------- 221 (298)
|+.+|--|+++|- +..+++.+ ..+.+|+..|.+++.++...+.+...+ .++.++..|..+..
T Consensus 2 gKValITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 2 SEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------VEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeecCCHHHHHHHHHHH
Confidence 4566888877654 33333322 223699999999999998888877643 47888999987521
Q ss_pred -CCCCCccEEEECCCC
Q 022372 222 -PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 74 ~~~~g~iDilVnnAG~ 89 (257)
T d2rhca1 74 VERYGPVDVLVNNAGR 89 (257)
T ss_dssp HHHTCSCSEEEECCCC
T ss_pred HHHhCCCCEEEecccc
Confidence 123678999988764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.92 E-value=2.8 Score=34.34 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCC-HHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-----
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHI-PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s-~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----- 221 (298)
.|+++|--|+++|. ++..|++. | .+|+..+.+ ++.++...+.+.+.+ .++.+...|..+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~-G--a~Vvi~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~D~~~~~~v~~~ 86 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR-G--CKVIVNYANSTESAEEVVAAIKKNG-------SDAACVKANVGVVEDIVRM 86 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-T--CEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-C--CEEEEEeCCchHHHHHHHHHHHhhC-------CceeeEeCCCCCHHHHHHH
Confidence 37889999987764 33444444 2 689888876 566676666666543 57888889987521
Q ss_pred -----CCCCCccEEEECCCCc-------------------------hhHHHHHhccccCcEEEE
Q 022372 222 -----PEFAPYDAIHVGAAAP-------------------------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 -----~~~~~fD~Ii~~~~~~-------------------------~l~~~l~~~LkpGG~Lvi 255 (298)
...+..|.++.+.... .+.+.+...|+.+|..++
T Consensus 87 ~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~ 150 (272)
T d1g0oa_ 87 FEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL 150 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccc
Confidence 1125679888887631 111456677777777766
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=82.19 E-value=7.6 Score=28.55 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=54.3
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++|.=||+|. |. +...|.+. ++ .+++..|.+++.++..++.. .+... .+... -...|+|
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~-~~-~~i~v~~r~~~~~~~l~~~~------------~~~~~-~~~~~----v~~~Div 61 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ-GG-YRIYIANRGAEKRERLEKEL------------GVETS-ATLPE----LHSDDVL 61 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS-CEEEEECSSHHHHHHHHHHT------------CCEEE-SSCCC----CCTTSEE
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CC-CcEEEEeCChhHHHHhhhhc------------ccccc-ccccc----ccccceE
Confidence 3577788876 43 33334444 33 58999999998877765432 22322 22211 1346888
Q ss_pred EECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+..-. +.....+.+.+++.+.+++++-.+
T Consensus 62 ~lavk-P~~~~~v~~~l~~~~~~viS~~ag 90 (152)
T d1yqga2 62 ILAVK-PQDMEAACKNIRTNGALVLSVAAG 90 (152)
T ss_dssp EECSC-HHHHHHHHTTCCCTTCEEEECCTT
T ss_pred EEecC-HHHHHHhHHHHhhcccEEeecccC
Confidence 86543 455567777788888899887654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=2.9 Score=34.10 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
.|+++|--|+++|. +..+++.+ ..+.+|+..|.+++.++.+.+.++..+ .++.++..|..+..
T Consensus 10 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------~~~~~~~~Dvs~~~~~~~~~~~ 81 (255)
T d1fmca_ 10 DGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------GQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEccCCCHHHHHHHHHH
Confidence 57788888877654 33333333 333699999999999998888887643 57888899987621
Q ss_pred --CCCCCccEEEECCCC
Q 022372 222 --PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 82 ~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 82 AISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHSSCCEEEECCCC
T ss_pred HHHHcCCCCEeeeCCcC
Confidence 112578998888753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.85 E-value=2.7 Score=34.36 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.|+.+|--|.++|. .+..|++. +.+|+.+|.+++.++.+.+.+...+ .++..+..|..+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~g-------~~~~~~~~Dv~~~~~v~~~~ 73 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE---GTAIALLDMNREALEKAEASVREKG-------VEARSYVCDVTSEEAVIGTV 73 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTT-------SCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHH
Confidence 47889999987764 33444444 2689999999999998888876643 47888899987521
Q ss_pred ----CCCCCccEEEECCC
Q 022372 222 ----PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~ 235 (298)
...+..|.++.++.
T Consensus 74 ~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 74 DSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCCeehhhhc
Confidence 11257899988765
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.40 E-value=2.9 Score=33.81 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC------C
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------W 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~------~ 221 (298)
.|+++|--|+++|- .+..|++. +.+|+.+|.+++.++...+.. .++..+..|..+. .
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~ 69 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS---GAKVVAVTRTNSDLVSLAKEC-----------PGIEPVCVDLGDWDATEKAL 69 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhc-----------CCCeEEEEeCCCHHHHHHHH
Confidence 47899999987763 23333443 369999999988776655432 3567778887752 1
Q ss_pred CCCCCccEEEECCCC
Q 022372 222 PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 70 ~~~g~iDilVnnAg~ 84 (242)
T d1cyda_ 70 GGIGPVDLLVNNAAL 84 (242)
T ss_dssp TTCCCCSEEEECCCC
T ss_pred HHcCCCeEEEECCcc
Confidence 223678999988753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=81.03 E-value=1.6 Score=38.14 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHccC-CCCCEEEEEcCCCcHHHHHHHH--------Hc-------CCCcEEEEEeCCHHHHHHHHHHH
Q 022372 133 SAPHMHATCLQLLEENL-KPGMHALDIGSGTGYLTACFAL--------MV-------GPQGRAVGVEHIPELVVSSIQNI 196 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l-~~g~~VLDiG~GsG~~t~~La~--------~~-------g~~~~V~giD~s~~~l~~A~~~~ 196 (298)
.+|.+...+.+.+.... ...-+|.|+||.+|..|..+.. .. .|.-+|+--|.-..=-...=+.+
T Consensus 32 ~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L 111 (359)
T d1m6ex_ 32 TKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL 111 (359)
T ss_dssp THHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT
T ss_pred HHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhc
Confidence 44544444444432111 2225689999999987743221 10 12235666665442222111111
Q ss_pred HHhccCCccCCCC--EEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 197 EKSAAAPLLKEGS--LSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 197 ~~~~~~~~l~~~~--v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
..... ..++ +..+-|....-..+.++.|.+++..++++
T Consensus 112 ~~~~~----~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHW 151 (359)
T d1m6ex_ 112 PIEND----VDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMW 151 (359)
T ss_dssp TTSCS----CTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTB
T ss_pred ccccc----CCCCeEEEecCCchhhhcCCCCceEEeeehhhhhh
Confidence 11000 0012 22334555555555588888888877543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.02 E-value=3.4 Score=33.53 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.|+.+|--|+++|- ++..|++. | .+|+..|.+++.++...+.+...+ .++..+..|..+..
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G--~~V~l~~r~~~~l~~~~~~~~~~~-------~~~~~~~~Dvs~~~~v~~~~ 75 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-K--SKLVLWDINKHGLEETAAKCKGLG-------AKVHTFVVDCSNREDIYSSA 75 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCCHHHHHHHH
Confidence 47788999988874 44555554 2 699999999999998888876643 57888999988631
Q ss_pred ----CCCCCccEEEECCCC
Q 022372 222 ----PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~ 236 (298)
...+..|.++.++..
T Consensus 76 ~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 76 KKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp HHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHcCCCceeEeeccc
Confidence 123578999888764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=80.43 E-value=3.2 Score=33.93 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.|+++|--|+++|- .+..|++. ..+|+..|.+++.++.+.+.+...+ .++.++..|..+..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~g-------~~~~~~~~Dv~~~~~v~~~~ 76 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL---GASVYTCSRNQKELNDCLTQWRSKG-------FKVEASVCDLSSRSERQELM 76 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-------CEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC-------CCceEEEeeCCCHHHHHHHH
Confidence 47889999988764 33344443 2699999999999988888876643 46788889987521
Q ss_pred ----CC-CCCccEEEECCCC
Q 022372 222 ----PE-FAPYDAIHVGAAA 236 (298)
Q Consensus 222 ----~~-~~~fD~Ii~~~~~ 236 (298)
.. .++.|+++.++..
T Consensus 77 ~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 77 NTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHhCCCceEEEECCce
Confidence 11 2368999988763
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.22 E-value=3.7 Score=33.50 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 151 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~---~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
+|++||-.|+..|- .+..|++. ..+|+.++.+++.++.+.+.+...+ .++.+...|..+.-
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~---G~~V~i~~r~~~~l~~~~~~~~~~~-------~~~~~~~~D~s~~~~~~~~~ 74 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL---GARVYTCSRNEKELDECLEIWREKG-------LNVEGSVCDLLSRTERDKLM 74 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC-------CCceEEEeecCCHHHHHHHH
Confidence 57899999987763 33344444 2699999999999988888777644 56788889987521
Q ss_pred -----CCCCCccEEEECCCC
Q 022372 222 -----PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 -----~~~~~fD~Ii~~~~~ 236 (298)
...+..|+++.++..
T Consensus 75 ~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 75 QTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHhCCCcEEEeccccc
Confidence 112467888877653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=80.01 E-value=8.3 Score=28.69 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=53.6
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE----EEEcCCCCCCCCCCC
Q 022372 153 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS----VHVGDGRKGWPEFAP 226 (298)
Q Consensus 153 ~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~----~~~gD~~~~~~~~~~ 226 (298)
++|--+|+|. |. ++..|++. | ..|+.+|.+++.++..++.-...... ...... ....|..+. ...
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~---~~~ 72 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-G--QSVLAWDIDAQRIKEIQDRGAIIAEG---PGLAGTAHPDLLTSDIGLA---VKD 72 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTSEEEES---SSCCEEECCSEEESCHHHH---HTT
T ss_pred CEEEEECccHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHcCCCchhh---hhhhhhhhhhhhhhhhHhH---hcC
Confidence 4778899987 43 44555554 3 68999999999888776532110000 000111 111111110 135
Q ss_pred ccEEEECCCCc---hhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAP---EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi 255 (298)
.|+|+..-... .+.+++...|+++-.+++
T Consensus 73 aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 73 ADVILIVVPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp CSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred CCEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence 79998776543 455778888888887664
|