Citrus Sinensis ID: 022377
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | 2.2.26 [Sep-21-2011] | |||||||
| Q39055 | 390 | Cyclic pyranopterin monop | yes | no | 1.0 | 0.764 | 0.842 | 1e-151 | |
| Q5RKZ7 | 636 | Molybdenum cofactor biosy | no | no | 0.996 | 0.466 | 0.646 | 1e-111 | |
| Q9NZB8 | 636 | Molybdenum cofactor biosy | no | no | 0.993 | 0.465 | 0.635 | 1e-109 | |
| Q1JQD7 | 633 | Molybdenum cofactor biosy | no | no | 0.993 | 0.467 | 0.635 | 1e-106 | |
| Q54NM6 | 630 | Molybdenum cofactor biosy | yes | no | 0.996 | 0.471 | 0.533 | 2e-94 | |
| Q8IQF1 | 565 | Molybdenum cofactor biosy | no | no | 0.936 | 0.493 | 0.548 | 5e-85 | |
| Q20624 | 600 | Molybdenum cofactor biosy | no | no | 0.932 | 0.463 | 0.528 | 3e-78 | |
| Q0AVU6 | 326 | Cyclic pyranopterin monop | yes | no | 0.989 | 0.904 | 0.397 | 2e-59 | |
| Q2RGL2 | 323 | Cyclic pyranopterin monop | yes | no | 0.989 | 0.913 | 0.421 | 9e-59 | |
| Q93KD1 | 325 | Cyclic pyranopterin monop | N/A | no | 0.969 | 0.889 | 0.421 | 2e-58 |
| >sp|Q39055|CNX2_ARATH Cyclic pyranopterin monophosphate synthase, mitochondrial OS=Arabidopsis thaliana GN=CNX2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/298 (84%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTPKPQLLS +EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C LS LKG
Sbjct: 93 MPSEGVELTPKPQLLSQSEIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKG 152
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LK LA+TTNG+TLA+KLP+LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AI
Sbjct: 153 LKNLAITTNGITLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAI 212
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCV+MRG NDDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE+
Sbjct: 213 ELGYNPVKVNCVIMRGLNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEV 272
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
+D VVK+FP ++RMQDHPTETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 273 MDKVVKRFPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFK 332
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 333 VCLFGPSEVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390
|
Involved in molybdenum cofactor biosynthesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5RKZ7|MOCS1_MOUSE Molybdenum cofactor biosynthesis protein 1 OS=Mus musculus GN=Mocs1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/297 (64%), Positives = 231/297 (77%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L L+G
Sbjct: 88 MPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVARLHGLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL +VNISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGLTTNGINLARLLPRLQQAGLNAVNISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY PVKVNCVVMRG N+DE+ DFV LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYKPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++PGL ++ + + TAK FKI G G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDTIRQRWPGLEKLPEEDSSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297
VCLFG SEVSLRD LR AS++EL IIGAAV RKK HAGMF+IA+ NRPMI IG
Sbjct: 328 VCLFGNSEVSLRDHLRAGASEEELLRIIGAAVGRKKRQHAGMFNIAQMKNRPMILIG 384
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Isoform Mocs1a and isoform Mocs1b probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis. Mus musculus (taxid: 10090) |
| >sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/296 (63%), Positives = 229/296 (77%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV G+DKIRLTGGEP +R D+ + L +L+G
Sbjct: 88 MPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIRLTGGEPLIRPDVVDIVAQLQRLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL+++NISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCVVMRG N+DE+ DF LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYNPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDTV +++P L ++ + + TAK FKI G G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS+ EL IIGAAV RKK HAGMF I++ NRPMI I
Sbjct: 328 VCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSISQMKNRPMILI 383
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Isoform MOCS1A and isoform MOCS1B probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis. Homo sapiens (taxid: 9606) |
| >sp|Q1JQD7|MOCS1_BOVIN Molybdenum cofactor biosynthesis protein 1 OS=Bos taurus GN=MOCS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/296 (63%), Positives = 232/296 (78%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L +L+G
Sbjct: 85 MPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVAQLRQLEG 144
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL+++NISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 145 LRTIGITTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 204
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY+PVKVNCVVMRG N+DE+ DFV LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 205 ELGYSPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 264
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++P L ++ + + TAK FKI G G VSFITSM+EHFC CNRLR+ ADGN K
Sbjct: 265 LDTLRQQWPELEKLPEEESSTAKAFKIPGFRGQVSFITSMSEHFCGTCNRLRITADGNLK 324
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS++EL +IGAAV RKK HAGMF+I++ NRPMI I
Sbjct: 325 VCLFGNSEVSLRDHLRAGASEEELLRVIGAAVGRKKRQHAGMFNISQMKNRPMILI 380
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Isoform MOCS1A and isoform MOCS1B probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis. Bos taurus (taxid: 9913) |
| >sp|Q54NM6|MOCS1_DICDI Molybdenum cofactor biosynthesis protein 1 OS=Dictyostelium discoideum GN=mocs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 160/300 (53%), Positives = 224/300 (74%), Gaps = 3/300 (1%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV L+ ++L+ +EI+RL+ LFV++GV+KIR TGGEP VRKD+E + K+KG
Sbjct: 85 MPEEGVMLSQADKILTTDEIIRLSKLFVSAGVNKIRFTGGEPLVRKDVEPLIEEVGKIKG 144
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+ + +TTNG+ L+RKL +L ++G+ +NISLDTL KF +TRR G ++V +SI+ A+
Sbjct: 145 LQKIGITTNGILLSRKLDRLHKAGVNLLNISLDTLNSDKFTLITRRLGWDRVFQSIDNAL 204
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++ VKVNCV+M+G ND EICDFVE+TRD+ + IRFIE+MPFDGN+W+ KK + Y +M
Sbjct: 205 KLDNIKVKVNCVIMKGLNDMEICDFVEMTRDKSVEIRFIEYMPFDGNLWSDKKFLSYTDM 264
Query: 181 LDTVVKKFPGLRRM---QDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADG 237
+ + +K+P ++ ++ P T+K + + G G V FITSM+EHFC+ CNRLR+ ADG
Sbjct: 265 IKIIHEKYPTFKKYTIEEEEPNNTSKTYHVPGFKGKVGFITSMSEHFCSSCNRLRITADG 324
Query: 238 NFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297
N KVCLFG +EV+LRD +R ASD +L EII AAV +KKA+HAGM++IA+ NRPMI IG
Sbjct: 325 NLKVCLFGNTEVNLRDRIRDGASDQQLLEIINAAVLKKKASHAGMYEIAQNKNRPMILIG 384
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Isoform mocs1a and isoform mocs1b probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8IQF1|MOCS1_DROME Molybdenum cofactor biosynthesis protein 1 OS=Drosophila melanogaster GN=Mocs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 154/281 (54%), Positives = 206/281 (73%), Gaps = 2/281 (0%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV L PK +LL+ EILRLA +FV GV KIRLTGGEPTVR+DI E + L
Sbjct: 88 MPAEGVPLQPKNKLLTTEEILRLARIFVEQGVRKIRLTGGEPTVRRDIVEIVAQMKALPE 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+ + +TTNGL L R L L+ +GL ++NISLDTL +FE +TRRKG E+V+ I+ A+
Sbjct: 148 LEQIGITTNGLVLTRLLLPLQRAGLDNLNISLDTLKRDRFEKITRRKGWERVIAGIDLAV 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++GY P KVNCV+MR FN+DEICDFVE TR+RP+++RFIE+MPF GN W+ ++L+ Y +
Sbjct: 208 QLGYRP-KVNCVLMRDFNEDEICDFVEFTRNRPVDVRFIEYMPFSGNKWHTERLISYKDT 266
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
L + +++P + + + P +T+K + + G G V FITSMTEHFC CNRLRL ADGN K
Sbjct: 267 LQIIRQRWPDFKALPNGPNDTSKAYAVPGFKGQVGFITSMTEHFCGTCNRLRLTADGNIK 326
Query: 241 VCLFGPSEVSLRDPLR-QNASDDELREIIGAAVKRKKAAHA 280
VCLFG E SLRD +R ++ S+++L ++IGAAV+RKK HA
Sbjct: 327 VCLFGNKEFSLRDAMRDESVSEEQLVDLIGAAVQRKKKQHA 367
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Isoform Mocs1a and isoform Mocs1b probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis. Drosophila melanogaster (taxid: 7227) |
| >sp|Q20624|MOCS1_CAEEL Molybdenum cofactor biosynthesis protein 1 OS=Caenorhabditis elegans GN=F49E2.1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 196/282 (69%), Gaps = 4/282 (1%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV L PK ++LS +E+LRL LF GVDK+RLTGGEPT+RKDI +S G
Sbjct: 92 MPAEGVPLKPKDKMLSNSEVLRLVKLFAAHGVDKVRLTGGEPTIRKDIVHIVEGISSTPG 151
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
+K + +TTNGL L R LP+L+++GLT +NIS+D+L KF +TRR G +KV ++I A
Sbjct: 152 IKEVGITTNGLVLQRFLPQLRDAGLTKINISIDSLDREKFAKMTRRDGFDKVWKAIELA- 210
Query: 121 EVGYNP-VKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAE 179
GY P VK+N VV++ N++E+ DFV LT+DR +++RFIEFMPF GN + + Y E
Sbjct: 211 -RGYYPKVKLNVVVLKHQNENEVVDFVNLTKDRNLDVRFIEFMPFGGNEFKNDNFIGYRE 269
Query: 180 MLDTVVKKF-PGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGN 238
ML+ +V K+ G+ R+ D P +T K +KIDG G FITSM++HFC CNRLR+ ADGN
Sbjct: 270 MLNLIVDKYGDGVIRLSDSPNDTTKAYKIDGFQGQFGFITSMSDHFCNTCNRLRITADGN 329
Query: 239 FKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHA 280
KVCL G SEVSLRD +R SD++L E+I AV KKA HA
Sbjct: 330 LKVCLHGNSEVSLRDRIRCGDSDEQLSEVIQKAVNNKKARHA 371
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Isoform mocs1a and isoform mocs1b probably form a complex that catalyzes the conversion of a guanosine derivative to precursor Z during molybdenum cofactor biosynthesis. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q0AVU6|MOAA_SYNWW Cyclic pyranopterin monophosphate synthase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=moaA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 184/302 (60%), Gaps = 7/302 (2%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP GVD +LSL E+ RL + G+ KIRLTGGEP VR+++ + +++++
Sbjct: 28 MPETGVDNLTHYSILSLEEMARLVRIASELGIQKIRLTGGEPLVRRNVPQLISYIAQIPR 87
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
+ +A+TTNG A +LK +GL +N SLD+LVP KF+++TRR KV E+I A+
Sbjct: 88 IDDIALTTNGTLFAALAEELKTAGLNRINFSLDSLVPEKFKYITRRGDLSKVKEAIFKAL 147
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPF-DGNVWNVKKLVPYAE 179
E+ +PVK+N VV+RGFNDDEI DFVEL R P+++RFIEFMP D W +++P +
Sbjct: 148 ELDMHPVKINMVVIRGFNDDEIIDFVELARKYPLHVRFIEFMPVGDLLFWKKDRMMPAQD 207
Query: 180 MLDTVVKKF---PGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLAD 236
+ + + + P + + P A+ + ++G G++ FI+ M+ HFC CNR+RL A+
Sbjct: 208 IKAYIEESYVLTPQKNILGNGP---ARYYSLEGGEGSLGFISPMSNHFCGECNRIRLTAE 264
Query: 237 GNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
G + CL+ EV+L+ L+ +SD+E++E+ A+K K A H + R M I
Sbjct: 265 GGLRGCLYDKREVNLKTALKNGSSDEEIKELFIWAIKAKPARHHMNNGWGEENKRKMYQI 324
Query: 297 GG 298
GG
Sbjct: 325 GG 326
|
Together with MoaC, is involved in the conversion of a guanosine derivative (5'-GTP) into molybdopterin precursor Z. Syntrophomonas wolfei subsp. wolfei (strain Goettingen) (taxid: 335541) |
| >sp|Q2RGL2|MOAA_MOOTA Cyclic pyranopterin monophosphate synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=moaA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 169/299 (56%), Gaps = 4/299 (1%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP GV L +L L EI LA + +G+ +IRLTGGEP VRK++ L+ + G
Sbjct: 28 MPATGVPLKGHEDILRLEEIATLARVAAGTGISRIRLTGGEPLVRKNVVTLVRELAAIPG 87
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+ +++TTNG+ L LKE+GL VNISLDTL ++ ++TRR V + I AA+
Sbjct: 88 LEEISLTTNGIFLGALAFSLKEAGLKRVNISLDTLKKDRYRYITRRGNITSVWQGIRAAL 147
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
G PVK+N V+ RGFNDDEI DF L R+ P++IRFIE MP + VP E+
Sbjct: 148 AAGLTPVKLNVVITRGFNDDEILDFARLAREEPLHIRFIELMPIGTAAASGTAYVPAEEI 207
Query: 181 LDTVVKKFPGLRRMQDHPTE-TAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239
+ + +P L D T A NF++ G G+V FIT M+ HFC+ CNRLRL ADG
Sbjct: 208 KGRISRVYP-LEPFPDLATNGPAANFRLVGGRGSVGFITPMSNHFCSRCNRLRLTADGKL 266
Query: 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
+ CL+ E+ ++ PLR A + EL I AV K A H + R M IGG
Sbjct: 267 RPCLYWDGEIDIKGPLRAGAPETELAAIFARAVSLKPAEH--HMENGWRQPRAMSQIGG 323
|
Together with MoaC, is involved in the conversion of a guanosine derivative (5'-GTP) into molybdopterin precursor Z. Moorella thermoacetica (strain ATCC 39073) (taxid: 264732) |
| >sp|Q93KD1|MOAA_EUBAC Cyclic pyranopterin monophosphate synthase OS=Eubacterium acidaminophilum GN=moaA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 178/301 (59%), Gaps = 12/301 (3%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EG+ +++L E+ +A V G+DKIR+TGGEP VRK I LSK +G
Sbjct: 34 MPQEGIPKRAHHDIMTLEELQEVAVALVELGIDKIRITGGEPLVRKGIVGLVRELSKCEG 93
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L + +TTNGL L+ +LK +GL VNISLDTL P KFE++TR EKV+E I A
Sbjct: 94 LNEITLTTNGLLLSEYARELKAAGLKRVNISLDTLNPQKFEYITRGGSLEKVLEGIKEAQ 153
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPF--DGNVWNVKKLVPYA 178
VG P+K+N V++ GFNDDEI DFV LT D I++RFIE MP+ +W+++K +
Sbjct: 154 SVGLTPIKLNTVLIGGFNDDEIEDFVALTVDNEIDVRFIELMPYRTGSRLWSLEKFISS- 212
Query: 179 EMLDTVVKKFPGLRRMQDHPTET-AKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADG 237
D+V+KK P L +++ + A+ ++I G G V I +T FC CNRLRL +DG
Sbjct: 213 ---DSVLKKVPSLEKIKSEDISSPAEYYRIPGALGKVGLINPITCKFCENCNRLRLTSDG 269
Query: 238 NFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297
K+CL SE+ L PLR+ +++R I+ +K K H+ + + R M IG
Sbjct: 270 KLKLCLHSDSEIDLAGPLRRG---EDIRGIVLDEIKNKPREHS--LEDGEYIKRDMFKIG 324
Query: 298 G 298
G
Sbjct: 325 G 325
|
Together with MoaC, is involved in the conversion of a guanosine derivative (5'-GTP) into molybdopterin precursor Z. Eubacterium acidaminophilum (taxid: 1731) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| 255542249 | 390 | molybdopterin cofactor synthesis protein | 1.0 | 0.764 | 0.855 | 1e-150 | |
| 225450297 | 373 | PREDICTED: molybdopterin biosynthesis pr | 1.0 | 0.798 | 0.859 | 1e-150 | |
| 297741210 | 468 | unnamed protein product [Vitis vinifera] | 1.0 | 0.636 | 0.859 | 1e-150 | |
| 449489090 | 403 | PREDICTED: molybdopterin biosynthesis pr | 1.0 | 0.739 | 0.838 | 1e-149 | |
| 449436241 | 403 | PREDICTED: molybdopterin biosynthesis pr | 1.0 | 0.739 | 0.838 | 1e-149 | |
| 42570346 | 390 | Molybdopterin biosynthesis protein CNX2 | 1.0 | 0.764 | 0.842 | 1e-149 | |
| 356525689 | 400 | PREDICTED: molybdopterin biosynthesis pr | 1.0 | 0.745 | 0.838 | 1e-149 | |
| 20197844 | 326 | molybdopterin synthase (CNX2) [Arabidops | 1.0 | 0.914 | 0.842 | 1e-148 | |
| 224106595 | 355 | predicted protein [Populus trichocarpa] | 1.0 | 0.839 | 0.848 | 1e-148 | |
| 21592848 | 390 | molybdopterin synthase (CNX2) [Arabidops | 1.0 | 0.764 | 0.838 | 1e-148 |
| >gi|255542249|ref|XP_002512188.1| molybdopterin cofactor synthesis protein A, putative [Ricinus communis] gi|223548732|gb|EEF50222.1| molybdopterin cofactor synthesis protein A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/298 (85%), Positives = 276/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTP PQLLS EI+RLA LFV+SGVDKIRLTGGEPT+RKDIEE C LS LKG
Sbjct: 93 MPSEGVELTPNPQLLSQKEIVRLANLFVSSGVDKIRLTGGEPTIRKDIEEICLELSNLKG 152
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LK LAMTTNG+TL+RKLPKLK+ GL S+NISLDTLVPAKFEF+TRRKGHE+VMESINAA+
Sbjct: 153 LKMLAMTTNGITLSRKLPKLKDCGLNSINISLDTLVPAKFEFMTRRKGHERVMESINAAV 212
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
+ GYNPVKVNCVVMRGFNDDEICDFVELTR+RPINIRFIEFMPFDGNVWNVKKLVPY+EM
Sbjct: 213 DCGYNPVKVNCVVMRGFNDDEICDFVELTRNRPINIRFIEFMPFDGNVWNVKKLVPYSEM 272
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD V KKF +RR+QDHP++TAKNFKIDGH G VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 273 LDRVAKKFTEIRRLQDHPSDTAKNFKIDGHLGAVSFITSMTEHFCAGCNRLRLLADGNFK 332
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLRQ A + EL+EIIGAAVKRKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 333 VCLFGPSEVSLRDPLRQGADEQELKEIIGAAVKRKKASHAGMFDIAKTANRPMIHIGG 390
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450297|ref|XP_002267864.1| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/298 (85%), Positives = 276/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTP PQLLS NEI+RLA LFV+SGVDKIRLTGGEPT+RKDIEE C LS LKG
Sbjct: 76 MPAEGVELTPNPQLLSQNEIVRLANLFVSSGVDKIRLTGGEPTIRKDIEEICSQLSSLKG 135
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTLA+TTNG+TLARKLPKLKE GL+SVNISLDTLVPAKFEF+TRRKGHE+VMESI+ AI
Sbjct: 136 LKTLAITTNGITLARKLPKLKECGLSSVNISLDTLVPAKFEFMTRRKGHERVMESIHTAI 195
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++GYNPVKVNCVVMRGFNDDEICDFVE+TRD+PINIRFIEFMPFDGNVWNVKKLVPYAEM
Sbjct: 196 DLGYNPVKVNCVVMRGFNDDEICDFVEMTRDKPINIRFIEFMPFDGNVWNVKKLVPYAEM 255
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD VVK+F L+R+QDHPTETAKNF IDGH G VSFITSMT++FCAGCNRLRLLADGNFK
Sbjct: 256 LDRVVKQFTSLKRLQDHPTETAKNFTIDGHCGTVSFITSMTKNFCAGCNRLRLLADGNFK 315
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR D EL EIIGAAVKRKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 316 VCLFGPSEVSLRDPLRSGVDDHELGEIIGAAVKRKKASHAGMFDIAKTANRPMIHIGG 373
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741210|emb|CBI32161.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/298 (85%), Positives = 276/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTP PQLLS NEI+RLA LFV+SGVDKIRLTGGEPT+RKDIEE C LS LKG
Sbjct: 171 MPAEGVELTPNPQLLSQNEIVRLANLFVSSGVDKIRLTGGEPTIRKDIEEICSQLSSLKG 230
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTLA+TTNG+TLARKLPKLKE GL+SVNISLDTLVPAKFEF+TRRKGHE+VMESI+ AI
Sbjct: 231 LKTLAITTNGITLARKLPKLKECGLSSVNISLDTLVPAKFEFMTRRKGHERVMESIHTAI 290
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++GYNPVKVNCVVMRGFNDDEICDFVE+TRD+PINIRFIEFMPFDGNVWNVKKLVPYAEM
Sbjct: 291 DLGYNPVKVNCVVMRGFNDDEICDFVEMTRDKPINIRFIEFMPFDGNVWNVKKLVPYAEM 350
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD VVK+F L+R+QDHPTETAKNF IDGH G VSFITSMT++FCAGCNRLRLLADGNFK
Sbjct: 351 LDRVVKQFTSLKRLQDHPTETAKNFTIDGHCGTVSFITSMTKNFCAGCNRLRLLADGNFK 410
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR D EL EIIGAAVKRKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 411 VCLFGPSEVSLRDPLRSGVDDHELGEIIGAAVKRKKASHAGMFDIAKTANRPMIHIGG 468
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449489090|ref|XP_004158212.1| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/298 (83%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGVDLT P+LL+ NEI+RLA LFV+SGV+KIRLTGGEPT+RKDIE+ CF LS LKG
Sbjct: 106 MPAEGVDLTSSPKLLTRNEIIRLANLFVSSGVNKIRLTGGEPTIRKDIEDICFELSNLKG 165
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTLAMTTNG+ LARKLPKLKE GL+++NISLDTLVPAKFEF+TRRKGHEKVMESINAA+
Sbjct: 166 LKTLAMTTNGIVLARKLPKLKECGLSAINISLDTLVPAKFEFMTRRKGHEKVMESINAAV 225
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++GYNPVKVNCV+MRGFNDDEIC+FVELTR++PINIRFIEFMPFDGNVWNVKKLVPY+E+
Sbjct: 226 DLGYNPVKVNCVIMRGFNDDEICNFVELTREKPINIRFIEFMPFDGNVWNVKKLVPYSEI 285
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
L TV K F L R+ DHPTETAKNF+IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 286 LQTVAKNFTNLTRLGDHPTETAKNFRIDGHQGSVSFITSMTEHFCAGCNRLRLLADGNFK 345
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLRQ A D+ELREII AAV+RKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 346 VCLFGPSEVSLRDPLRQGADDNELREIIRAAVRRKKASHAGMFDIAKTANRPMIHIGG 403
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436241|ref|XP_004135901.1| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/298 (83%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGVDLT P+LL+ NEI+RLA LFV+SGV+KIRLTGGEPT+RKDIE+ CF LS LKG
Sbjct: 106 MPAEGVDLTSSPKLLTRNEIIRLANLFVSSGVNKIRLTGGEPTIRKDIEDICFELSNLKG 165
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTLAMTTNG+ LARKLPKLKE GL+++NISLDTLVPAKFEF+TRRKGHEKVMESINAA+
Sbjct: 166 LKTLAMTTNGIVLARKLPKLKECGLSAINISLDTLVPAKFEFMTRRKGHEKVMESINAAV 225
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++GYNPVKVNCV+MRGFNDDEIC+FVELTR++PINIRFIEFMPFDGNVWNVKKLVPY+E+
Sbjct: 226 DLGYNPVKVNCVIMRGFNDDEICNFVELTREKPINIRFIEFMPFDGNVWNVKKLVPYSEI 285
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
L TV K F L R+ DHPTETAKNF+IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 286 LQTVAKNFTNLTRLGDHPTETAKNFRIDGHQGSVSFITSMTEHFCAGCNRLRLLADGNFK 345
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLRQ A D+ELREII AAV+RKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 346 VCLFGPSEVSLRDPLRQGADDNELREIIRAAVRRKKASHAGMFDIAKTANRPMIHIGG 403
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570346|ref|NP_850177.2| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] gi|79323865|ref|NP_001031461.1| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] gi|3023535|sp|Q39055.1|CNX2_ARATH RecName: Full=Cyclic pyranopterin monophosphate synthase, mitochondrial; AltName: Full=Molybdenum cofactor biosynthesis enzyme CNX2; AltName: Full=Molybdopterin biosynthesis protein CNX2; AltName: Full=Molybdopterin precursor Z synthase; Flags: Precursor gi|662871|emb|CAA88107.1| Cnx2 [Arabidopsis thaliana] gi|17529062|gb|AAL38741.1| unknown protein [Arabidopsis thaliana] gi|20465495|gb|AAM20207.1| putative molybdopterin synthase (CNX2) [Arabidopsis thaliana] gi|330253514|gb|AEC08608.1| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] gi|330253515|gb|AEC08609.1| Molybdopterin biosynthesis protein CNX2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/298 (84%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTPKPQLLS +EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C LS LKG
Sbjct: 93 MPSEGVELTPKPQLLSQSEIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKG 152
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LK LA+TTNG+TLA+KLP+LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AI
Sbjct: 153 LKNLAITTNGITLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAI 212
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCV+MRG NDDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE+
Sbjct: 213 ELGYNPVKVNCVIMRGLNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEV 272
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
+D VVK+FP ++RMQDHPTETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 273 MDKVVKRFPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFK 332
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 333 VCLFGPSEVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525689|ref|XP_003531456.1| PREDICTED: molybdopterin biosynthesis protein CNX2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/298 (83%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP +GV+LTP PQLL+ EILR A LFV+SGV+KIRLTGGEPT+RKDIE+ C LS LKG
Sbjct: 103 MPADGVELTPSPQLLTKTEILRCANLFVSSGVNKIRLTGGEPTIRKDIEDICLELSTLKG 162
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTL+MTTNG+ LARKLPKLKE GL SVNISLDTLVPAKFEF+TRRKGHEKVM+SINAAI
Sbjct: 163 LKTLSMTTNGIALARKLPKLKECGLNSVNISLDTLVPAKFEFMTRRKGHEKVMDSINAAI 222
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
++G+NPVKVNCVVMRGFNDDEICDFVELTR++PI+IRFIEFMPFDGNVWNVKKLVPY+EM
Sbjct: 223 DLGFNPVKVNCVVMRGFNDDEICDFVELTREKPIDIRFIEFMPFDGNVWNVKKLVPYSEM 282
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDTV+K+F L+R+QDHPT+TAKNF IDGH G +SFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 283 LDTVMKQFTSLKRVQDHPTDTAKNFTIDGHAGRISFITSMTEHFCAGCNRLRLLADGNFK 342
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSE+SLRDPLR+ A DDELREII AAVKRKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 343 VCLFGPSEISLRDPLRRGAEDDELREIIAAAVKRKKASHAGMFDIAKTANRPMIHIGG 400
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197844|gb|AAM15276.1| molybdopterin synthase (CNX2) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/298 (84%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTPKPQLLS +EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C LS LKG
Sbjct: 29 MPSEGVELTPKPQLLSQSEIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKG 88
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LK LA+TTNG+TLA+KLP+LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AI
Sbjct: 89 LKNLAITTNGITLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAI 148
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCV+MRG NDDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE+
Sbjct: 149 ELGYNPVKVNCVIMRGLNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEV 208
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
+D VVK+FP ++RMQDHPTETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 209 MDKVVKRFPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFK 268
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 269 VCLFGPSEVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 326
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106595|ref|XP_002314219.1| predicted protein [Populus trichocarpa] gi|222850627|gb|EEE88174.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/298 (84%), Positives = 276/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LT PQLLS +EI+ LA LFV+SGVDKIRLTGGEPT+RKDIE+ C LS LKG
Sbjct: 58 MPAEGVELTRSPQLLSQDEIVHLANLFVSSGVDKIRLTGGEPTIRKDIEDICLQLSNLKG 117
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTLAMTTNG+TLARKLPKLKE GLTS+NISLDTLVPAKFEFLTRRKGHE+VM+SINAAI
Sbjct: 118 LKTLAMTTNGITLARKLPKLKECGLTSLNISLDTLVPAKFEFLTRRKGHERVMDSINAAI 177
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
+ GYNPVKVNCVVMRGFNDDEICDFVELT ++PIN+RFIEFMPFDGNVWNVKKLVPY+EM
Sbjct: 178 DCGYNPVKVNCVVMRGFNDDEICDFVELTHNKPINVRFIEFMPFDGNVWNVKKLVPYSEM 237
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD V K+FP L+R+QDHP +TAKNF+IDGH G VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 238 LDRVGKQFPSLKRLQDHPADTAKNFRIDGHLGMVSFITSMTEHFCAGCNRLRLLADGNFK 297
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR+ A + ELREIIGAAVKRKKA+HAGMFDIAKTANRPMIHIGG
Sbjct: 298 VCLFGPSEVSLRDPLREGAEEHELREIIGAAVKRKKASHAGMFDIAKTANRPMIHIGG 355
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21592848|gb|AAM64798.1| molybdopterin synthase (CNX2) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/298 (83%), Positives = 276/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTPKPQLLS +EI+RLA LFV++G +KIRLTGGEPTVRKDIEE C LS LKG
Sbjct: 93 MPSEGVELTPKPQLLSQSEIVRLAGLFVSAGANKIRLTGGEPTVRKDIEEICLQLSSLKG 152
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LK LA+TTNG+TLA+KLP+LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AI
Sbjct: 153 LKNLAITTNGMTLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAI 212
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCV+MRG NDDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE+
Sbjct: 213 ELGYNPVKVNCVIMRGLNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEV 272
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
+D VVK+FP ++RMQDHPTETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 273 MDKVVKRFPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFK 332
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 333 VCLFGPSEVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| TAIR|locus:2827337 | 390 | CNX2 "cofactor of nitrate redu | 1.0 | 0.764 | 0.842 | 2e-136 | |
| UNIPROTKB|F1NZS3 | 342 | MOCS1 "Uncharacterized protein | 1.0 | 0.871 | 0.634 | 3.8e-101 | |
| MGI|MGI:1928904 | 636 | Mocs1 "molybdenum cofactor syn | 0.996 | 0.466 | 0.646 | 7.9e-101 | |
| RGD|1308471 | 480 | Mocs1 "molybdenum cofactor syn | 0.996 | 0.618 | 0.636 | 5.6e-100 | |
| UNIPROTKB|F1N8A1 | 366 | MOCS1 "Uncharacterized protein | 0.993 | 0.808 | 0.631 | 7.1e-100 | |
| UNIPROTKB|E2RDQ4 | 634 | MOCS1 "Uncharacterized protein | 0.993 | 0.466 | 0.638 | 5e-99 | |
| UNIPROTKB|Q9NZB8 | 636 | MOCS1 "Molybdenum cofactor bio | 0.993 | 0.465 | 0.635 | 6.4e-99 | |
| UNIPROTKB|Q1JQD7 | 633 | MOCS1 "Molybdenum cofactor bio | 0.993 | 0.467 | 0.635 | 8.2e-99 | |
| UNIPROTKB|F1RVP4 | 637 | MOCS1 "Uncharacterized protein | 0.993 | 0.464 | 0.625 | 3.2e-97 | |
| ZFIN|ZDB-GENE-130215-1 | 402 | mocs1 "molybdenum cofactor syn | 1.0 | 0.741 | 0.617 | 1.8e-96 |
| TAIR|locus:2827337 CNX2 "cofactor of nitrate reductase and xanthine dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
Identities = 251/298 (84%), Positives = 277/298 (92%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTPKPQLLS +EI+RLA LFV++GV+KIRLTGGEPTVRKDIEE C LS LKG
Sbjct: 93 MPSEGVELTPKPQLLSQSEIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKG 152
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LK LA+TTNG+TLA+KLP+LKE GL S+NISLDTLVPAKFEFLTRRKGH++VM+SI+ AI
Sbjct: 153 LKNLAITTNGITLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAI 212
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCV+MRG NDDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAE+
Sbjct: 213 ELGYNPVKVNCVIMRGLNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEV 272
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
+D VVK+FP ++RMQDHPTETAKNF IDGH G+VSFITSMTEHFCAGCNRLRLLADGNFK
Sbjct: 273 MDKVVKRFPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNFK 332
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRDPLR A D+ LREIIGAAVKRKKAAHAGM DIAKTANRPMIHIGG
Sbjct: 333 VCLFGPSEVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390
|
|
| UNIPROTKB|F1NZS3 MOCS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
Identities = 189/298 (63%), Positives = 235/298 (78%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK +LL+ EI+ LA LFV GV+KIRLTGGEP +R D+ + L KL+G
Sbjct: 45 MPEEGVQLTPKSELLTAQEIITLAGLFVKEGVEKIRLTGGEPLIRPDVVDIVGQLYKLEG 104
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKT+A+TTNG+ LAR LP+LKE+GL ++NISLDTLVPAKFEF+ RRKG KVME I+ A
Sbjct: 105 LKTIAVTTNGINLARLLPRLKEAGLNAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAT 164
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY PVKVNCVVMRG N+DE+ +FV+ T+D P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 165 ELGYRPVKVNCVVMRGLNEDELLNFVDFTKDLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 224
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++P L ++ + TAK++K+ G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 225 LDTIKQRWPELEKLPCEASSTAKSYKVPHFQGQISFITSMSEHFCGSCNRLRITADGNLK 284
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFG SEVSLRD LR AS++EL +IIGAAV RKK HAGMF+IA+ NRPMI IGG
Sbjct: 285 VCLFGSSEVSLRDHLRSGASEEELVQIIGAAVSRKKKQHAGMFNIAQMKNRPMILIGG 342
|
|
| MGI|MGI:1928904 Mocs1 "molybdenum cofactor synthesis 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 192/297 (64%), Positives = 231/297 (77%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L L+G
Sbjct: 88 MPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVARLHGLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL +VNISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGLTTNGINLARLLPRLQQAGLNAVNISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY PVKVNCVVMRG N+DE+ DFV LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYKPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++PGL ++ + + TAK FKI G G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDTIRQRWPGLEKLPEEDSSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297
VCLFG SEVSLRD LR AS++EL IIGAAV RKK HAGMF+IA+ NRPMI IG
Sbjct: 328 VCLFGNSEVSLRDHLRAGASEEELLRIIGAAVGRKKRQHAGMFNIAQMKNRPMILIG 384
|
|
| RGD|1308471 Mocs1 "molybdenum cofactor synthesis 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 189/297 (63%), Positives = 230/297 (77%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L +L+G
Sbjct: 88 MPEEGVSLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVARLHQLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP L+++GL++VN+SLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGVTTNGINLARLLPSLQQAGLSAVNVSLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY PVKVNCVVMRG N+DE+ DFV LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYKPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD + +++PGL ++ + + TAK FKI G G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDAIRQRWPGLEKLPEEDSSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297
VCLFG SEVSLRD LR AS++EL IIG AV RKK HAGMF+IA+ NRPMI IG
Sbjct: 328 VCLFGNSEVSLRDHLRAGASEEELLRIIGVAVGRKKRQHAGMFNIAQMKNRPMILIG 384
|
|
| UNIPROTKB|F1N8A1 MOCS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 187/296 (63%), Positives = 233/296 (78%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK +LL+ EI+ LA LFV GV+KIRLTGGEP +R D+ + L KL+G
Sbjct: 71 MPEEGVQLTPKSELLTAQEIITLAGLFVKEGVEKIRLTGGEPLIRPDVVDIVGQLYKLEG 130
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKT+A+TTNG+ LAR LP+LKE+GL ++NISLDTLVPAKFEF+ RRKG KVME I+ A
Sbjct: 131 LKTIAVTTNGINLARLLPRLKEAGLNAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAT 190
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY PVKVNCVVMRG N+DE+ +FV+ T+D P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 191 ELGYRPVKVNCVVMRGLNEDELLNFVDFTKDLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 250
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++P L ++ + TAK++K+ G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 251 LDTIKQRWPELEKLPCEASSTAKSYKVPHFQGQISFITSMSEHFCGSCNRLRITADGNLK 310
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS++EL +IIGAAV RKK HAGMF+IA+ NRPMI I
Sbjct: 311 VCLFGSSEVSLRDHLRSGASEEELVQIIGAAVSRKKKQHAGMFNIAQMKNRPMILI 366
|
|
| UNIPROTKB|E2RDQ4 MOCS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 189/296 (63%), Positives = 232/296 (78%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L +L+G
Sbjct: 88 MPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVAQLHQLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL+++NISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGITTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY+PVKVNCVVMRG N+DE+ +FV LT+ P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYSPVKVNCVVMRGLNEDELLNFVALTKGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++P L ++ + + TAK FKI G G VSFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDTLQQQWPELEKLPEEESSTAKAFKIPGFRGQVSFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS++EL IIGAAV RKK HAGMF IA+ NRPMI I
Sbjct: 328 VCLFGSSEVSLRDHLRAGASEEELLRIIGAAVGRKKQQHAGMFSIAQMKNRPMILI 383
|
|
| UNIPROTKB|Q9NZB8 MOCS1 "Molybdenum cofactor biosynthesis protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 188/296 (63%), Positives = 229/296 (77%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV G+DKIRLTGGEP +R D+ + L +L+G
Sbjct: 88 MPEEGVPLTPKANLLTTEEILTLARLFVKEGIDKIRLTGGEPLIRPDVVDIVAQLQRLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL+++NISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCVVMRG N+DE+ DF LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYNPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDTV +++P L ++ + + TAK FKI G G +SFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS+ EL IIGAAV RKK HAGMF I++ NRPMI I
Sbjct: 328 VCLFGNSEVSLRDHLRAGASEQELLRIIGAAVGRKKRQHAGMFSISQMKNRPMILI 383
|
|
| UNIPROTKB|Q1JQD7 MOCS1 "Molybdenum cofactor biosynthesis protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 188/296 (63%), Positives = 232/296 (78%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTPK LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L +L+G
Sbjct: 85 MPEEGVPLTPKADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVAQLRQLEG 144
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP+L+++GL+++NISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 145 LRTIGITTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 204
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY+PVKVNCVVMRG N+DE+ DFV LT P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 205 ELGYSPVKVNCVVMRGLNEDELLDFVALTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 264
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LDT+ +++P L ++ + + TAK FKI G G VSFITSM+EHFC CNRLR+ ADGN K
Sbjct: 265 LDTLRQQWPELEKLPEEESSTAKAFKIPGFRGQVSFITSMSEHFCGTCNRLRITADGNLK 324
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS++EL +IGAAV RKK HAGMF+I++ NRPMI I
Sbjct: 325 VCLFGNSEVSLRDHLRAGASEEELLRVIGAAVGRKKRQHAGMFNISQMKNRPMILI 380
|
|
| UNIPROTKB|F1RVP4 MOCS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 185/296 (62%), Positives = 229/296 (77%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV LTP+ LL+ EIL LA LFV GVDKIRLTGGEP +R D+ + L +L+G
Sbjct: 88 MPEEGVPLTPRADLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVARLHQLEG 147
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
L+T+ +TTNG+ LAR LP L+++GL+++NISLDTLVPAKFEF+ RRKG KVME I+ AI
Sbjct: 148 LRTIGITTNGINLARLLPPLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAI 207
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GY+PVKVNCVVMRG N+DE+ DFV T P+++RFIE+MPFDGN WN KK+V Y EM
Sbjct: 208 ELGYSPVKVNCVVMRGLNEDELLDFVAWTEGLPLDVRFIEYMPFDGNKWNFKKMVSYKEM 267
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD + +++P L ++ + + TAK FKI G G VSFITSM+EHFC CNRLR+ ADGN K
Sbjct: 268 LDAIQQQWPELEKLPEEESSTAKAFKIPGFQGQVSFITSMSEHFCGTCNRLRITADGNLK 327
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHI 296
VCLFG SEVSLRD LR AS++E+ IIGAAV RKK HAGMF+I++ NRPMI I
Sbjct: 328 VCLFGNSEVSLRDHLRAGASEEEVLRIIGAAVGRKKRQHAGMFNISQMKNRPMILI 383
|
|
| ZFIN|ZDB-GENE-130215-1 mocs1 "molybdenum cofactor synthesis 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 184/298 (61%), Positives = 229/298 (76%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP +GV LTP+ QLL+ +E+L +A LFV GV+KIR+TGGEP +R DI L KL+G
Sbjct: 105 MPQDGVKLTPRSQLLTTDELLTVARLFVQEGVNKIRITGGEPLIRPDILHIIAELRKLEG 164
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKT+A+TTNG+ LA+ LP LK++G+ +NISLDTLVPAKFEF+TRRKG KVME I AI
Sbjct: 165 LKTIAVTTNGMNLAKILPDLKKAGVDLLNISLDTLVPAKFEFITRRKGFHKVMEGIERAI 224
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCVVMRG N+DE+ DFV LT +P+++RFIE+MPF+GN WN K +V Y EM
Sbjct: 225 EMGYNPVKVNCVVMRGLNEDELVDFVSLTERKPLDVRFIEYMPFNGNRWNFKMMVSYQEM 284
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
LD + +K+P L+ + T+TAK F+I G G + FITSM++HFC CNRLR+ ADGN K
Sbjct: 285 LDCIKQKWPNLQPLPGEETDTAKAFQIPGFQGQMGFITSMSDHFCGSCNRLRITADGNLK 344
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFG +EVSLRD LR A++ EL IIGAAV RKK HAGM +I+K NRPMI IGG
Sbjct: 345 VCLFGNAEVSLRDFLRSGATEKELLHIIGAAVGRKKKQHAGMLNISKMKNRPMILIGG 402
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A7GU01 | MOAA_BACCN | No assigned EC number | 0.3862 | 0.9530 | 0.8427 | yes | no |
| A6TVF9 | MOAA_ALKMQ | No assigned EC number | 0.3444 | 0.9798 | 0.9125 | yes | no |
| C0Z9B3 | MOAA_BREBN | No assigned EC number | 0.3444 | 0.9765 | 0.8584 | yes | no |
| Q9RJ47 | MOAA_STRCO | No assigned EC number | 0.3940 | 0.9966 | 0.8709 | yes | no |
| A4J6S5 | MOAA_DESRM | No assigned EC number | 0.4186 | 0.9899 | 0.9076 | yes | no |
| Q721B9 | MOAA_LISMF | No assigned EC number | 0.3782 | 0.9697 | 0.8678 | yes | no |
| P45311 | MOAA_HAEIN | No assigned EC number | 0.3771 | 0.9597 | 0.8486 | yes | no |
| Q39055 | CNX2_ARATH | No assigned EC number | 0.8422 | 1.0 | 0.7641 | yes | no |
| A0AHG0 | MOAA_LISW6 | No assigned EC number | 0.3774 | 0.9765 | 0.8738 | yes | no |
| Q31JB9 | MOAA_THICR | No assigned EC number | 0.3377 | 0.9899 | 0.8912 | yes | no |
| Q8ZGW5 | MOAA_YERPE | No assigned EC number | 0.3687 | 0.9127 | 0.8343 | yes | no |
| A5UFB4 | MOAA_HAEIG | No assigned EC number | 0.3771 | 0.9597 | 0.8486 | yes | no |
| A7GEQ5 | MOAA_CLOBL | No assigned EC number | 0.3545 | 0.9765 | 0.9122 | yes | no |
| B5YJ09 | MOAA_THEYD | No assigned EC number | 0.4046 | 0.9865 | 0.9130 | yes | no |
| B0TI16 | MOAA_HELMI | No assigned EC number | 0.3960 | 0.9899 | 0.9021 | yes | no |
| Q2RGL2 | MOAA_MOOTA | No assigned EC number | 0.4214 | 0.9899 | 0.9133 | yes | no |
| Q0TPG6 | MOAA_CLOP1 | No assigned EC number | 0.3597 | 0.9765 | 0.9009 | yes | no |
| Q747W9 | MOAA_GEOSL | No assigned EC number | 0.3737 | 0.9530 | 0.8711 | yes | no |
| Q0AVU6 | MOAA_SYNWW | No assigned EC number | 0.3973 | 0.9899 | 0.9049 | yes | no |
| A8MLW5 | MOAA_ALKOO | No assigned EC number | 0.3913 | 0.9798 | 0.9125 | yes | no |
| Q92CY2 | MOAA_LISIN | No assigned EC number | 0.3782 | 0.9697 | 0.8678 | yes | no |
| A5I365 | MOAA_CLOBH | No assigned EC number | 0.3545 | 0.9765 | 0.9122 | yes | no |
| Q0SS32 | MOAA_CLOPS | No assigned EC number | 0.3663 | 0.9765 | 0.9009 | yes | no |
| C1FPG7 | MOAA_CLOBJ | No assigned EC number | 0.3545 | 0.9765 | 0.9122 | yes | no |
| Q88WY1 | MOAA_LACPL | No assigned EC number | 0.3420 | 0.9832 | 0.8825 | yes | no |
| Q8Y870 | MOAA_LISMO | No assigned EC number | 0.3814 | 0.9697 | 0.8678 | yes | no |
| A7FUZ6 | MOAA_CLOB1 | No assigned EC number | 0.3545 | 0.9765 | 0.9122 | yes | no |
| A5CYZ0 | MOAA_PELTS | No assigned EC number | 0.4066 | 0.9932 | 0.9107 | yes | no |
| A9BF51 | MOAA_PETMO | No assigned EC number | 0.3821 | 0.9295 | 0.8575 | yes | no |
| Q9WX96 | MOAA_CLOPE | No assigned EC number | 0.3663 | 0.9765 | 0.9009 | yes | no |
| C3KXJ8 | MOAA_CLOB6 | No assigned EC number | 0.3511 | 0.9765 | 0.9122 | yes | no |
| B1IN35 | MOAA_CLOBK | No assigned EC number | 0.3545 | 0.9765 | 0.9122 | yes | no |
| C1L1W8 | MOAA_LISMC | No assigned EC number | 0.3782 | 0.9697 | 0.8678 | yes | no |
| B1KU20 | MOAA_CLOBM | No assigned EC number | 0.3511 | 0.9765 | 0.9122 | yes | no |
| Q7UT69 | MOAA_RHOBA | No assigned EC number | 0.3881 | 0.9966 | 0.8272 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003725001 | SubName- Full=Chromosome chr13 scaffold_149, whole genome shotgun sequence; (326 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00017312001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (235 aa) | • | • | • | • | • | • | 0.997 | ||
 | GSVIVG00008624001 | SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (226 aa) | • | • | • | • | • | 0.993 | |||
 | GSVIVG00017321001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (235 aa) | • | • | • | • | • | • | 0.979 | ||
 | GSVIVG00017434001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (649 aa) | • | • | • | 0.973 | |||||
 | GSVIVG00032069001 | SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (134 aa) | • | • | 0.934 | ||||||
 | GSVIVG00027273001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (465 aa) | • | • | 0.922 | ||||||
 | GSVIVG00036941001 | SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (445 aa) | • | 0.899 | |||||||
 | GSVIVG00020457001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (208 aa) | • | • | 0.867 | ||||||
 | GSVIVG00008868001 | SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa) | • | • | 0.835 | ||||||
 | Ndpk | RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (148 aa) | • | • | 0.821 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 298 | |||
| PLN02951 | 373 | PLN02951, PLN02951, Molybderin biosynthesis protei | 0.0 | |
| PRK00164 | 331 | PRK00164, moaA, molybdenum cofactor biosynthesis p | 1e-118 | |
| TIGR02666 | 334 | TIGR02666, moaA, molybdenum cofactor biosynthesis | 1e-113 | |
| COG2896 | 322 | COG2896, MoaA, Molybdenum cofactor biosynthesis en | 1e-104 | |
| PRK13361 | 329 | PRK13361, PRK13361, molybdenum cofactor biosynthes | 1e-77 | |
| TIGR02668 | 302 | TIGR02668, moaA_archaeal, probable molybdenum cofa | 4e-61 | |
| pfam06463 | 127 | pfam06463, Mob_synth_C, Molybdenum Cofactor Synthe | 6e-51 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 2e-24 | |
| COG0535 | 347 | COG0535, COG0535, Predicted Fe-S oxidoreductases [ | 1e-17 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 3e-12 | |
| TIGR02109 | 358 | TIGR02109, PQQ_syn_pqqE, coenzyme PQQ biosynthesis | 4e-12 | |
| PRK05301 | 378 | PRK05301, PRK05301, pyrroloquinoline quinone biosy | 1e-11 | |
| COG1964 | 475 | COG1964, COG1964, Predicted Fe-S oxidoreductases [ | 5e-11 | |
| COG2100 | 414 | COG2100, COG2100, Predicted Fe-S oxidoreductase [G | 7e-11 | |
| TIGR04055 | 325 | TIGR04055, rSAM_NirJ2, putative heme d1 biosynthes | 4e-09 | |
| TIGR04347 | 390 | TIGR04347, pseudo_SAM_Halo, pseudo-rSAM protein/SP | 6e-09 | |
| TIGR04053 | 365 | TIGR04053, sam_11, radical SAM protein, BA_1875 fa | 4e-08 | |
| TIGR04133 | 350 | TIGR04133, rSAM_w_lipo, radical SAM enzyme, rSAM/l | 2e-07 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 3e-07 | |
| TIGR04303 | 325 | TIGR04303, GeoRSP_rSAM, GeoRSP system radical SAM/ | 6e-06 | |
| TIGR04054 | 351 | TIGR04054, rSAM_NirJ1, putative heme d1 biosynthes | 1e-05 | |
| TIGR03470 | 318 | TIGR03470, HpnH, hopanoid biosynthesis associated | 2e-05 | |
| COG1180 | 260 | COG1180, PflA, Pyruvate-formate lyase-activating e | 2e-05 | |
| TIGR04317 | 349 | TIGR04317, W_rSAM_matur, tungsten cofactor oxidore | 3e-05 | |
| TIGR03961 | 332 | TIGR03961, rSAM_PTO1314, archaeal radical SAM prot | 8e-05 | |
| TIGR04251 | 353 | TIGR04251, SCM_rSAM_ScmF, SynChlorMet cassette rad | 3e-04 | |
| TIGR04051 | 354 | TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical | 0.003 | |
| TIGR04103 | 412 | TIGR04103, rSAM_nif11_3, nif11-class peptide radic | 0.004 |
| >gnl|CDD|215513 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Score = 609 bits (1573), Expect = 0.0
Identities = 250/298 (83%), Positives = 278/298 (93%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP EGV+LTPK LLS +EI+RLA LFV +GVDKIRLTGGEPT+RKDIE+ C LS LKG
Sbjct: 76 MPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKG 135
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
LKTLAMTTNG+TL+RKLP+LKE+GLTS+NISLDTLVPAKFEFLTRRKGH++V+ESI+ AI
Sbjct: 136 LKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAI 195
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEM 180
E+GYNPVKVNCVVMRGFNDDEICDFVELTRD+PIN+RFIEFMPFDGNVWNVKKLVPYAEM
Sbjct: 196 ELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEM 255
Query: 181 LDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240
+D + ++FP L+R+QDHPT+TAKNF+IDGH G+VSFITSMTEHFCAGCNRLRLLADGN K
Sbjct: 256 MDRIEQRFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLK 315
Query: 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
VCLFGPSEVSLRD LR A DDELREIIGAAVKRKKAAHAGMFD+AKTANRPMIHIGG
Sbjct: 316 VCLFGPSEVSLRDALRSGADDDELREIIGAAVKRKKAAHAGMFDLAKTANRPMIHIGG 373
|
Length = 373 |
| >gnl|CDD|234672 PRK00164, moaA, molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Score = 342 bits (881), Expect = e-118
Identities = 131/299 (43%), Positives = 177/299 (59%), Gaps = 3/299 (1%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP + PK +LLSL EI RL FV GV K+RLTGGEP +RKD+E+ L+ L G
Sbjct: 35 MPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPG 94
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
++ LA+TTNG LAR+ LK++GL VN+SLD+L P +F+ +T R ++V+ I+AA+
Sbjct: 95 IRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAAL 154
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD-GNVWNVKKLVPYAE 179
G PVKVN V+M+G NDDEI D +E +DR I +RFIE MP GN W K + AE
Sbjct: 155 AAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAE 214
Query: 180 MLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239
+ + ++ L + + A+ F+ + G + I +T FCA CNRLRL ADG
Sbjct: 215 IRARLAERGWTL-QPRARSGGPAQYFRHPDYGGEIGLIAPVTHDFCASCNRLRLTADGKL 273
Query: 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
+CLF V LRD LR A D+EL I A++ K H G+ D R M +IGG
Sbjct: 274 HLCLFAEDGVDLRDLLRSGADDEELAAAIREALQNKPEGH-GLHDGNTGPTRHMSYIGG 331
|
Length = 331 |
| >gnl|CDD|233967 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Score = 328 bits (844), Expect = e-113
Identities = 135/307 (43%), Positives = 180/307 (58%), Gaps = 9/307 (2%)
Query: 1 MPPEGV-DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK 59
MP G D PK +LL+ EI RL FV GV K+RLTGGEP +RKD+ E L+ L
Sbjct: 28 MPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALP 87
Query: 60 GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGH-EKVMESINA 118
G++ +A+TTNGL LAR LKE+GL VN+SLD+L P +F +TRR G E+V+ I+A
Sbjct: 88 GIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDA 147
Query: 119 AIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD-GNVWNVKKLVPY 177
A+ G PVK+N VVMRG NDDEI D E ++R + +RFIE MP GN W KK V
Sbjct: 148 ALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSA 207
Query: 178 AEMLDTVVKKFPGLRRMQDHP---TETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLL 234
E+L+ + + F L + A +++ G G + FI+ +++ FC CNRLRL
Sbjct: 208 DEILERLEQAFGPLEPVPSPRGNGPAPAYRWRLPGGKGRIGFISPVSDPFCGTCNRLRLT 267
Query: 235 ADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIA---KTANR 291
ADG ++CLF V LR LR ASD L II A +++K H+ + + K R
Sbjct: 268 ADGKLRLCLFADDGVDLRPLLRGGASDALLEAIIQAILQKKPEGHSFLRFTSPANKRRKR 327
Query: 292 PMIHIGG 298
M IGG
Sbjct: 328 AMSQIGG 334
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 334 |
| >gnl|CDD|225449 COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = e-104
Identities = 133/299 (44%), Positives = 181/299 (60%), Gaps = 6/299 (2%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
MP + PK +LLSL EI RL F GV+K+RLTGGEP +RKD++E L++L G
Sbjct: 29 MPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARL-G 87
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
++ L++TTNG+ LAR+ LKE+GL VN+SLD+L P KF +T R ++V+E I+AA+
Sbjct: 88 IRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAV 147
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD-GNVWNVKKLVPYAE 179
E G PVK+N V+M+G NDDEI D +E ++R +RFIE MP GN W + K + E
Sbjct: 148 EAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDE 207
Query: 180 MLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239
+L + ++ L ++ AK F I G + FI ++ FCA CNRLRL ADG
Sbjct: 208 ILRKLEERAT-LLPVRKRLHGRAKYF-IHPDGGEIGFIAPVSNPFCATCNRLRLTADGKL 265
Query: 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
K CLF + LRD LR ASD+EL E I A++R+ H T R M +IGG
Sbjct: 266 KPCLFREDGIDLRDLLRSGASDEELVEAIREALRRRPPYH--KLHRGNTGRREMSYIGG 322
|
Length = 322 |
| >gnl|CDD|237364 PRK13361, PRK13361, molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 1e-77
Identities = 109/300 (36%), Positives = 157/300 (52%), Gaps = 9/300 (3%)
Query: 4 EGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKT 63
E P+ Q+LSL E+ LA F GV KIRLTGGEP VR+ ++ L KL GL+
Sbjct: 34 EDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEE 93
Query: 64 LAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123
L++TTNG LAR +L ++GL +NISLDTL P F LTR E+V+ I+AA G
Sbjct: 94 LSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAG 153
Query: 124 YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDG-NVWNVKKLVPYAEMLD 182
+ +K+N V++RG NDDE+ D VE R+R ++I FIE MP + + E+
Sbjct: 154 FERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRA 213
Query: 183 TVVKKFPGLRRMQDHPTET---AKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239
+ ++P + T A+ + + ++ FI+ + +FC CNR+R+ A+G
Sbjct: 214 IIETRYP----LTPSNKRTGGPARYYTMADSPIHIGFISPHSHNFCHECNRVRVTAEGQL 269
Query: 240 KVCLFGPSEVSLRDPLRQNASDDE-LREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298
+CL LR LR+ D E L+ I AA+ K H + R M GG
Sbjct: 270 LLCLGNEHASDLRSILREGPGDIERLKAAILAAINLKPKGHHFDDNGQVQILRFMNATGG 329
|
Length = 329 |
| >gnl|CDD|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 4e-61
Identities = 106/281 (37%), Positives = 152/281 (54%), Gaps = 20/281 (7%)
Query: 4 EGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKT 63
EG D + LS EI R+ + GV K+++TGGEP +RKD+ E + G+K
Sbjct: 30 EGEDRSGGN-ELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDY-GIKD 87
Query: 64 LAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123
++MTTNG+ L + KLKE+GL VN+SLDTL P K++ +T R ++V+E I +A++ G
Sbjct: 88 VSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAG 147
Query: 124 YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDT 183
PVK+N VV++G ND+EI D VE + ++ IE MP K+ Y E +D
Sbjct: 148 LTPVKLNMVVLKGINDNEIPDMVEFAAEGGAILQLIELMPPG---EGEKEFKKYHEDIDP 204
Query: 184 VVKKFPGL------RRMQDHPTETAKNFKIDGHHGNVSFITSM-TEHFCAGCNRLRLLAD 236
+ ++ + RRM + P + I G V + M FCA C RLRL +D
Sbjct: 205 IEEELEKMADRVRTRRMHNRPK-----YFIPG-GVEVEVVKPMDNPVFCAHCTRLRLTSD 258
Query: 237 GNFKVCLF-GPSEVSLRDPLRQNASDDELREIIGAAVKRKK 276
G K CL + V + D LR DDELRE AV R++
Sbjct: 259 GKLKTCLLRDDNLVDILDALRNGE-DDELREAFREAVARRE 298
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 302 |
| >gnl|CDD|115139 pfam06463, Mob_synth_C, Molybdenum Cofactor Synthesis C | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 6e-51
Identities = 61/128 (47%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 154 INIRFIEFMPFD-GNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHG 212
I +RFIE MP GN W KK V YAE+LD + ++FP L + A+ ++I G G
Sbjct: 1 IELRFIELMPVGEGNGWRRKKFVSYAEILDRLEERFP-LLAARKRTGGPARRYRIPGGGG 59
Query: 213 NVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAV 272
+ FI M+ FCA CNRLRL ADG K CLF + LRD LR A D+ELRE I AV
Sbjct: 60 RIGFIAPMSNPFCASCNRLRLTADGKLKTCLFRNDGIDLRDALRSGADDEELREAIREAV 119
Query: 273 KRKKAAHA 280
RK H+
Sbjct: 120 ARKPPRHS 127
|
This region contains two iron-sulphur (3Fe-4S) binding sites. Mutations in this region of human MOCS1 cause MOCOD (Molybdenum Co-Factor Deficiency) type A. Length = 127 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-24
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--GLKTLAM 66
K + LS EIL A GV+ + LTGGEP + D+ E L KL+ + +
Sbjct: 22 RGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLPDLVELLERLLKLREGEGIRITL 81
Query: 67 TTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN 125
TNG L L +LKE+GL V+ISL + + + R E+V+E++ E G
Sbjct: 82 ETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIP 141
Query: 126 PVKVNCVVMRGFNDDEICDFVEL 148
V N V + G ND+++ + +EL
Sbjct: 142 VVVDNIVGLPGENDEDLEETLEL 164
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|223609 COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 1e-17
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 10 PKPQLLSLNEILRLAYLFVTSGVDKIR-LTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT 68
P LS E LR+ G + TGGEP +R D+ E + K G++ +++T
Sbjct: 43 KLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKGGIRV-SLST 101
Query: 69 NGLTLARK-LPKLKESGLTSVNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNP 126
NG L + L KLKE+GL V+ISLD L P + + KG ++ +E+I E G
Sbjct: 102 NGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGI-L 160
Query: 127 VKVNCVVMRGFNDDEICDFVELTRDRPINI-RFIEFMPFDGNVWNVKKL 174
V +N V + N DE+ + +L + ++ +P N++
Sbjct: 161 VVINTTVTK-INYDELPEIADLAAELGVDELNVFPLIPVGRGEENLELD 208
|
Length = 347 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 3e-12
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 10/177 (5%)
Query: 18 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK- 76
EIL + GV+ + LTGGEP + ++ E L K +++ TNG L +
Sbjct: 31 EEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELPGFEISIETNGTLLTEEL 90
Query: 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGH-EKVMESINAAIEVGYNPVKVNCVVMR 135
L +LKE GL V +SLD+ + + ++ +E++ E G + ++ ++
Sbjct: 91 LKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAG---LGLSTTLLV 147
Query: 136 GFNDDEICDFVELTRD-----RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 187
G D++ D +E P + +P +G + V AE L ++
Sbjct: 148 GLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELAAPVVPAEKLLRLIAA 204
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|162708 TIGR02109, PQQ_syn_pqqE, coenzyme PQQ biosynthesis enzyme PqqE | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-12
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 31 GVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSVN 89
GV ++ +GGEP R D+ E H +L GL T +T+ GLT AR L L ++GL V
Sbjct: 53 GVLQLHFSGGEPLARPDLVELVAHARRL-GLYTNLITSGVGLTEAR-LDALADAGLDHVQ 110
Query: 90 ISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148
+S + A + + + E+ + A G P+ +N V+ R N D+I + +EL
Sbjct: 111 LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL-PLTLNFVIHRH-NIDQIPEIIEL 168
Query: 149 TRD 151
+
Sbjct: 169 AIE 171
|
This model describes coenzyme PQQ biosynthesis protein E, a prototypical peptide-cyclizing radical SAM enzyme. It links a Tyr to a Glu as the first step in the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ) from the precursor peptide PqqA. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 358 |
| >gnl|CDD|235397 PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 31 GVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSVN 89
G ++ +GGEP +RKD+EE H +L GL T +T+ GLT AR L LK++GL +
Sbjct: 62 GALQLHFSGGEPLLRKDLEELVAHAREL-GLYTNLITSGVGLTEAR-LAALKDAGLDHIQ 119
Query: 90 ISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148
+S P + L + K + GY P+ +N V+ R N D+I +EL
Sbjct: 120 LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY-PLTLNAVIHR-HNIDQIPRIIEL 177
|
Length = 378 |
| >gnl|CDD|224875 COG1964, COG1964, Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-11
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 35 IRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK---LPKLKESGLTSVNIS 91
++ TGGEPT+R D+ E +++ +G + + TNG+ LA + KL+E+G+ +V +S
Sbjct: 114 VQFTGGEPTLRDDLIE-IIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVNTVYLS 172
Query: 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151
D + P T K H ++ +++ + G V + ++RG ND E+ + +
Sbjct: 173 FDGVTPK-----TNWKNHWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALN 227
Query: 152 RPINIRFIEFMP 163
+R + F P
Sbjct: 228 NIDVVRGVNFQP 239
|
Length = 475 |
| >gnl|CDD|225011 COG2100, COG2100, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 7e-11
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 40 GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKL-PKLKESGLTSVNISLDTLVPA 98
GEP + + + L + KG++ ++M TNG+ L++KL +L+E+GL +N+S+D L P
Sbjct: 169 GEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPK 228
Query: 99 KFEFLTRRKGH--EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151
+ L RK + +KV+E G + V + V + G NDDE+ +E R+
Sbjct: 229 LAKMLAGRKDYDVKKVLEVAEYIANAGID-VLIAPVWLPGVNDDEMPKIIEWARE 282
|
Length = 414 |
| >gnl|CDD|188570 TIGR04055, rSAM_NirJ2, putative heme d1 biosynthesis radical SAM protein NirJ2 | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 37 LTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLP-KLKESGLTSVNISLDTL 95
+GGEP +R DI E + + KGL+ + TNG + ++ KLK++G V ISLD+L
Sbjct: 51 FSGGEPLMRPDIYELIAYATD-KGLRP-VLGTNGTLITPEVARKLKKAGAMRVGISLDSL 108
Query: 96 VPAKFEFLTRRKGH-EKVMESINAAIEVGYNPVKVNCVVMRGFNDDE---ICDF-VEL 148
K + G E + + + G P +++ VM +N DE I DF VEL
Sbjct: 109 DAKKHDAFRGYPGAWEGAVRGMENCRKAGL-PFQIHTTVMD-WNRDEVEAITDFAVEL 164
|
Members of this radical SAM protein subfamily, designated NirJ2, occur in genomic contexts with a paralog NirJ1 and with other nitrite reductase operon genes associated with heme d1 biosynthesis, as in Heliobacillus mobilis and Heliophilum fasciatum. NirJ2 is presumed by bioinformatics analysis (Xiong, et al.) to be a heme d1 biosynthesis protein by context. Length = 325 |
| >gnl|CDD|213960 TIGR04347, pseudo_SAM_Halo, pseudo-rSAM protein/SPASM domain protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-09
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 5 GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTL 64
G D P LS E L GV I +GGEP VR D+EE + + G++ +
Sbjct: 58 GADTEAAPGELSTAEAKALLDDLADYGVPVILFSGGEPLVRDDLEELVAYAADA-GIRPV 116
Query: 65 AMTTNGLTLAR-KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123
++TNG L + L+++GL +S+D L EF + + + I ++VG
Sbjct: 117 -LSTNGTLLTEERAEALRDAGLDYAGVSVDGLPERNDEFRGKDGAFDAAVRGIENCLDVG 175
Query: 124 YNP 126
Sbjct: 176 LKT 178
|
Members of this family all have a C-terminal SPASM domain (see model TIGR04085), a region usually found as a C-terminal second 4Fe-4S domain of radical SAM domain (see pfam04055) proteins. A majority of rSAM/SPASM proteins modify ribosomally produced peptides. In a few members of this family, the key Cys residues of the radical SAM domain have been lost, making this a pseudo-rSAM family. Members of this family are restricted so far to Haloarchaea, always occur next a member of family TIGR04031, and are often accompanied by another rSAM/SPASM domain protein. The function of this two or three gene cassette is unknown. Length = 390 |
| >gnl|CDD|234449 TIGR04053, sam_11, radical SAM protein, BA_1875 family | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 37 LTGGEPTVRKDIEEACFHLSKLKGLKTLAMT---TNGLTLARKLPKLKESGLTSVNISLD 93
LTGG+P +R D+ E + + L GL+ ++++ T LT + LKE+G+++V++SLD
Sbjct: 62 LTGGDPLMRPDLFELVDYATSL-GLR-VSLSPSVTPNLTREA-IAALKEAGVSAVSLSLD 118
Query: 94 TLVPAKFEFLTRRKGH-EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151
+ G ++ + +I AA+E+G PV++N V N E+ D +L +D
Sbjct: 119 GATAETHDAFRGVPGSFDRTVNAIRAALELGI-PVQINTTVTAE-NVHELPDVAKLLKD 175
|
Members of this subfamily of the radical SAM domain superfamily show closer sequence relationships to peptide-modifying proteins of bacteriocin and PQQ biosynthesis than to other characterized radical SAM proteins. Within this subfamily, targets are likely to be diverse [Unknown function, Enzymes of unknown specificity]. Length = 365 |
| >gnl|CDD|200384 TIGR04133, rSAM_w_lipo, radical SAM enzyme, rSAM/lipoprotein system | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 35 IRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLAR-KLPKLKESGLTSVNISLD 93
+ +TGGEP VR D+EE L + +G M TNGL L +L L SGL S+ ISLD
Sbjct: 77 VIITGGEPLVRPDLEEIGRELYR-RGY-PWGMVTNGLALTEERLTSLLNSGLRSITISLD 134
Query: 94 TL 95
Sbjct: 135 GF 136
|
Members of this protein family are radical SAM enzymes with an additional 4Fe4S cluster-binding C-terminal domain (TIGR04085) shared with PqqE and many other peptide and protein-modifying radical SAM enzymes. All members occur in the context of a predicted lipoprotein that usually is encoded by an adjacent gene. Length = 350 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVR-----KDIEEACFHLSKLKG 60
K + L ++R L G + + GG PT+ +++ EA + L
Sbjct: 26 KLRSRYLEALVREIELLAEKGEKEGLVGTVFIGGGTPTLLSPEQLEELLEAIREILGLAK 85
Query: 61 LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAA 119
+ + T TL L LKE+G+ V++ + + + + R E V+E++
Sbjct: 86 DVEITIETRPDTLTEELLEALKEAGVNRVSLGVQSGDDEVLKAINRGHTVEDVLEAVELL 145
Query: 120 IEVGYNPVKVNCVVMRGF---NDDEICDFVELTRD-RPINIRFIEFMPFDG 166
E G P+KV+ ++ G +++ + ++L ++ P + P G
Sbjct: 146 REAG--PIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPG 194
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|213916 TIGR04303, GeoRSP_rSAM, GeoRSP system radical SAM/SPASM protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-06
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 29 TSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLAR-KLPKLKESGLTS 87
+GV + GGEP +R D+ E + G++ ++M +NG + R K LK++G +
Sbjct: 46 AAGVFSVNFGGGEPLLRPDLLEIASCAAG-SGMR-VSMNSNGYLIDRDKAAALKDAGFSK 103
Query: 88 VNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146
V IS+D+ +P + G H + + ++ E G ++ V+ R N I D +
Sbjct: 104 VGISIDSHLPRVHDRFRGVDGSHGRAVNALRHLAEAGIK-TSISTVICR-INHTAIDDLI 161
Query: 147 ELTR 150
R
Sbjct: 162 TFAR 165
|
Members of this family are radical SAM/SPASM domain proteins from a cassette restricted to the genus Geobacter. Genes always found adjacent include a non-radical SAM protein with a closely related SPASM domain and a short stretch of N-terminal homology as well to this family, and also a PqqD-like protein. The three-gene cassette is designated GeoRSP for the genus Geobacter, this radical SAM protein, the SPASM domain protein, and the PqqD family protein. Length = 325 |
| >gnl|CDD|188569 TIGR04054, rSAM_NirJ1, putative heme d1 biosynthesis radical SAM protein NirJ1 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 31 GVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPK-LKESGLTSVN 89
V + +GGEP +R+D+ E + +K +G++ ++TNG + ++ K LK+ G+ V
Sbjct: 46 KVPVLLFSGGEPLMREDLFELAAYATK-RGIRP-TISTNGTLITKETAKELKKIGVGYVG 103
Query: 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123
ISLD + +F + E +E I + VG
Sbjct: 104 ISLDGIGEVNDKFRGVKGAFEAALEGIRNCVAVG 137
|
Members of this radical SAM protein subfamily, designated NirJ1, occur in genomic contexts with a paralog NirJ2 and with other nitrite reductase operon genes associated with heme d1 biosynthesis, as in Heliobacillus mobilis and Heliophilum fasciatum. NirJ1 is presumed by bioinformatics analysis (Xiong, et al.) to be a heme d1 biosynthesis protein by context, perhaps involved in conversions of acetate groups to methyl groups in conversion from uroporphyrinogen III. Length = 351 |
| >gnl|CDD|213816 TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT 72
Q LS+ E LR G + + GGEP + +I+E L K K + + TN L
Sbjct: 57 QRLSVEECLRAV---DECGAPVVSIPGGEPLLHPEIDEIVRGLVARK--KFVYLCTNALL 111
Query: 73 LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 132
L +KL K + S + ++ LD L + R ++ +E+I A G+ V N
Sbjct: 112 LEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFR-VTTNTT 170
Query: 133 VMRGFNDDEICDFVELTRD 151
+ + +E+ +F + +
Sbjct: 171 LFNDTDPEEVAEFFDYLTE 189
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH and running in the same convergent direction is IspH (ZM0875, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase), an essential enzyme of IPP biosynthesis and therefore essential for the biosynthesis of hopanoids. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. Length = 318 |
| >gnl|CDD|224101 COG1180, PflA, Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 31 GVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90
+ +GGEPT++ + +K +GL A+ TNG L +L L +V +
Sbjct: 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHV-ALDTNGFLPPEALEELLPL-LDAVLL 140
Query: 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE-----ICDF 145
L + LT E V+E++ ++G V++ +V+ G+NDDE + +F
Sbjct: 141 DLKAFDDELYRKLTGADN-EPVLENLELLADLG-VHVEIRTLVIPGYNDDEEEIRELAEF 198
Query: 146 V-ELTRDRPINIRFIEFMPF 164
+ +L + P I + F
Sbjct: 199 IADLGPEIP-----IHLLRF 213
|
Length = 260 |
| >gnl|CDD|234539 TIGR04317, W_rSAM_matur, tungsten cofactor oxidoreducase radical SAM maturase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 32 VDKIRLTG-GEPTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 89
+ +I L G GEPTV D + L++ K + ++TNG L +L G+ +
Sbjct: 51 LKEIVLGGIGEPTVHPDFIDM---LTEAKERGFAVGLSTNGYLLEEMAEELVGLGVDKIY 107
Query: 90 ISLDTLVPAKFEFLTRRKGH---EKVMESINAAIE--VGYNPVK----VNCVVMRGFNDD 140
+S+D L R GH KV+E++ E + K + V + N
Sbjct: 108 VSIDALPDKP----YRIIGHGDLAKVLENLKKLYEIKIKKGSDKPHVGIEFVATK-ENYK 162
Query: 141 EICDFVELTRD 151
E+ + VEL R
Sbjct: 163 ELPELVELARK 173
|
Members of this family are radical SAM enzymes involved in the maturation of tungsten (W)-containing cofactors in the enzymes aldehyde ferredoxin oxidoreductase, formaldehyde ferredoxin oxidoreductase, and others, and tend to be encoded by an adjacent gene. Length = 349 |
| >gnl|CDD|188476 TIGR03961, rSAM_PTO1314, archaeal radical SAM protein, PTO1314 family | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 43/200 (21%)
Query: 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEAC------FHLSKLKGLKT 63
+LLSL E +++ +GV + GGEP +R+D+ + FH S
Sbjct: 46 KDEKLLSLEEEIKMMDALERAGVLFMGFEGGEPLLRRDLPQILEESHKRFHTS------- 98
Query: 64 LAMTTNGLTLARKLPKLKESGLTSVNISLDTL---------VPAKFEFLTRRKGHEKVME 114
+ TNG L ++ + E L + +S+D + +P F E+ +E
Sbjct: 99 --LVTNGWLLKDRIKSISEY-LDYLFVSIDGIGEVHDKQRGIPGSF---------ERAVE 146
Query: 115 SINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF-IEFMPFDGNVWNVKK 173
I A Y PV ++ + N D+I D VEL R +++ + + + +K
Sbjct: 147 GIKEAKR--YLPVSISFTITNE-NLDQIFDVVELARKLGVSVSIQVSY-----DYSTAEK 198
Query: 174 LVPYAEMLDTVVKKFPGLRR 193
L P + L V++ L+R
Sbjct: 199 LSPERKKLYDVLEGLKELKR 218
|
Members of this protein family average about 340 residues in length, with a radical SAM domain in the N-terminal 200 residues. The taxonomic distribution is restricted to non-methanogenic archaea, including Picrophilus torridus (locus PTO1314), Sulfolobus sp., Thermoplasma sp., Picrophilus torridus, and Metallosphaera sedula. The gene neighborhood is not conserved, and the function of this family is unknown [Unknown function, Enzymes of unknown specificity]. Length = 332 |
| >gnl|CDD|211974 TIGR04251, SCM_rSAM_ScmF, SynChlorMet cassette radical SAM/SPASM protein ScmF | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 29/250 (11%)
Query: 31 GVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPK-LKESGLTSVN 89
G+ ++LTGGEP + I E L+ L++ TNGL + + L V+
Sbjct: 53 GLTSVKLTGGEPLLHPAIGE-ILECIGENNLQ-LSVETNGLLCTPQTARDLASCETPFVS 110
Query: 90 ISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148
+SLD + A +++ KG +K + I+ +E G +P + V R N ++ V L
Sbjct: 111 VSLDGVDAATHDWMRGVKGAFDKAVRGIHNLVEAGIHPQIIMTVTRR--NVGQMEQIVRL 168
Query: 149 TRDRPINIRFIEF-----------MPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDH 197
+ ++F M +G ++ +LV E ++ + LR H
Sbjct: 169 AES--LGAESVKFNHVQPTSRGSKMHENGETLSIGELVALGEWMERTLIPSTALRIDFGH 226
Query: 198 PTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQ 257
P ++ G + C L +L+DG++ +C G S+ + +
Sbjct: 227 PPAFRPLGRMFGEKPGGCGL-------CGIFGILGVLSDGSYALCGIGE---SIPELVFG 276
Query: 258 NASDDELREI 267
NA D L +
Sbjct: 277 NAGSDRLDSV 286
|
A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Of the two PqqE homologs of the cassette, this family is the more distant in sequence. Length = 353 |
| >gnl|CDD|188566 TIGR04051, rSAM_NirJ, heme d1 biosynthesis radical SAM protein NirJ | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG-LTL 73
LS E+LR+ GV + L+GGEP +R DI E ++ G +A++TNG L
Sbjct: 32 LSTAEVLRVIDDLKAFGVPALILSGGEPLLRPDIFEIAAR-ARQLGF-YVALSTNGTLID 89
Query: 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK 107
+ ++ +G V IS+D L F RR
Sbjct: 90 EGNIARIAAAGFDYVGISIDGLEATHDRF--RRL 121
|
Heme d1 occurs in the cytochrome cd1 subunit of nitrite reductase in species such as Pseudomonas stutzeri. NirJ is a radical SAM protein involved in its bioynthesis. In a number of species, distinct genes NirJ1 and NirJ2 are found in similar genomic regions; this model describe authentic NirJ from genomes with NirJ only [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 354 |
| >gnl|CDD|200354 TIGR04103, rSAM_nif11_3, nif11-class peptide radical SAM maturase 3 | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.004
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 28/280 (10%)
Query: 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69
P+ Q LS E L L G+ ++ L GGE +R D E +++ + MTT
Sbjct: 29 PRTQELSTAEALNLVQQLAEVGIREVTLIGGEAFLRPDWLEIAAAITRAGMI--CGMTTG 86
Query: 70 GLTLARKLPK-LKESGLTSVNISLDTLVPAKFEFLTRRKGHEK-VMESINAAIEVGYNPV 127
G ++ +L + +KE+G+ +V++S+D L + L ++G ++ EVG P
Sbjct: 87 GYGISLQLAQRMKEAGIAAVSVSIDGL-ETTHDRLRGKQGAWHSAFRTMQHLKEVGI-PF 144
Query: 128 KVNCVVMRGFNDDEICDFVELTRDRPINIRFIEF-MPFDGNVWNVKKLVPYAEMLDTVVK 186
N + R + E E RD + I+ +P N + L+ E+LD
Sbjct: 145 GCNTQINR-LSAPEFPRIYEQIRDAGVYAWQIQLTVPMGHAADNWEILLQPCELLDL--- 200
Query: 187 KFPGLRRM-QDHPTETAKNFKID--GHHGNVSFITSMTEH---FCAGC----NRLRLLAD 236
+P L ++ Q E + + + G++G + H F GC + L + AD
Sbjct: 201 -YPMLAQVAQRAAQEGVRVYAGNNIGYYGPYERLLRGGGHPWAFWQGCGAGLSTLGIEAD 259
Query: 237 GNFKVCLFGPSEV----SLRD-PLRQ-NASDDELREIIGA 270
G K C P+ ++RD PLR +ELR + A
Sbjct: 260 GTIKGCPSLPTSAYAGGNIRDQPLRSIMEQSEELRFNLNA 299
|
Members of this protein family are peptide-modifying radical SAM enzymes, with a C-terminal additional 4Fe-4S cluster binding domain like many other peptide-modifying radical SAM enzymes. This form occurs primarily in the genera Cyanothece and Nostoc. Length = 412 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 100.0 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 100.0 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 100.0 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 100.0 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 100.0 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 100.0 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 100.0 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 100.0 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 100.0 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.97 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.97 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.97 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.95 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 99.94 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.86 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.85 | |
| PF06463 | 128 | Mob_synth_C: Molybdenum Cofactor Synthesis C; Inte | 99.85 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.85 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 99.84 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 99.83 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.82 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.81 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.8 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.79 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 99.74 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.72 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.72 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.71 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.71 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.7 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.7 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.69 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.69 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.68 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.66 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.65 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.65 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 99.64 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 99.63 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.63 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.63 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.63 | |
| PRK07094 | 323 | biotin synthase; Provisional | 99.62 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.6 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.59 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.58 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.58 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.57 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 99.56 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.56 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.54 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.52 | |
| PRK15108 | 345 | biotin synthase; Provisional | 99.52 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.51 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 99.5 | |
| PRK06256 | 336 | biotin synthase; Validated | 99.49 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 99.49 | |
| PLN02389 | 379 | biotin synthase | 99.49 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.47 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 99.44 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.43 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 99.41 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.4 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.4 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.36 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 99.34 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.33 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.32 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.31 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 99.29 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 99.29 | |
| PRK08508 | 279 | biotin synthase; Provisional | 99.28 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.28 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 99.27 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 99.27 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 99.26 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 99.24 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.23 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.23 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.17 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.14 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 99.13 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 99.12 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.11 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 99.11 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 99.1 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.05 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.03 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 99.03 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 99.02 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.99 | |
| PLN02428 | 349 | lipoic acid synthase | 98.99 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 98.98 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 98.98 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 98.96 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 98.94 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 98.94 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 98.93 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 98.92 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 98.92 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 98.91 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 98.91 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 98.89 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 98.89 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 98.87 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 98.87 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 98.85 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 98.84 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.81 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 98.8 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 98.79 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 98.77 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 98.77 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.76 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 98.73 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 98.72 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 98.71 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.7 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 98.68 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.68 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.66 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 98.65 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.65 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.64 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.64 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 98.61 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.61 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.6 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 98.57 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.56 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 98.54 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 98.52 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.51 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.49 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.46 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.45 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 98.44 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 98.44 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 98.4 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 98.37 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 98.36 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 98.31 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 98.25 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 98.24 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 98.19 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 98.15 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 98.1 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 98.09 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 98.03 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 98.02 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 98.01 | |
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 98.0 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 97.98 | |
| PF13186 | 64 | SPASM: Iron-sulfur cluster-binding domain | 97.87 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 97.68 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 97.67 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 97.66 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.65 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 97.63 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 97.59 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 97.57 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 97.49 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.34 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 97.31 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.3 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 97.22 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 97.21 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.2 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 97.17 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 97.04 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 97.04 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 97.02 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 97.01 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 97.01 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 96.98 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 96.98 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 96.84 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 96.8 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 96.75 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 96.74 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 96.71 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 96.67 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 96.55 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 96.46 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 96.39 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 96.25 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 96.23 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.15 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 96.13 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 95.67 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 95.3 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 95.22 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 94.95 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 94.89 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 94.64 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 94.5 | |
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 93.23 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 93.05 | |
| PF11946 | 138 | DUF3463: Domain of unknown function (DUF3463); Int | 92.77 | |
| smart00876 | 94 | BATS Biotin and Thiamin Synthesis associated domai | 92.45 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 91.6 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 91.34 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 90.81 | |
| PRK15452 | 443 | putative protease; Provisional | 90.74 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 90.62 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 90.57 | |
| PF06968 | 93 | BATS: Biotin and Thiamin Synthesis associated doma | 89.92 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 89.46 | |
| COG0007 | 244 | CysG Uroporphyrinogen-III methylase [Coenzyme meta | 89.42 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 89.14 | |
| COG2875 | 254 | CobM Precorrin-4 methylase [Coenzyme metabolism] | 88.39 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 88.31 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 88.23 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 88.13 | |
| COG1105 | 310 | FruK Fructose-1-phosphate kinase and related fruct | 87.92 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 87.62 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 87.1 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 86.84 | |
| PRK14057 | 254 | epimerase; Provisional | 86.78 | |
| PRK15447 | 301 | putative protease; Provisional | 86.5 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 86.2 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 85.89 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 85.72 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 85.28 | |
| PF10566 | 273 | Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: | 85.26 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 84.9 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 84.72 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 84.42 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 84.34 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 84.14 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 83.97 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 83.96 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 83.9 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 83.86 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 83.83 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 83.72 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 83.22 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 83.14 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 83.06 | |
| PRK15473 | 257 | cbiF cobalt-precorrin-4 C(11)-methyltransferase; P | 82.87 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 82.71 | |
| TIGR00620 | 199 | sporelyase spore photoproduct lyase. This family i | 82.63 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 82.62 | |
| PLN02645 | 311 | phosphoglycolate phosphatase | 82.51 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 82.22 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 82.1 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 81.97 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 81.69 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 81.39 | |
| TIGR00646 | 218 | MG010 DNA primase-related protein. The DNA primase | 80.5 |
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=361.70 Aligned_cols=298 Identities=84% Similarity=1.345 Sum_probs=264.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||.++.+..++...|+.|++.++++.+.+.|+..|.|+|||||+++++.++++++++..++..+.|+|||+++++.+.+|
T Consensus 76 ~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L 155 (373)
T PLN02951 76 MPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRL 155 (373)
T ss_pred CCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHH
Confidence 45666665555677999999999999999999999999999999999999999999865775589999999998889999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+++|++.|+||||+.+++.|+.+++.+++++++++|+.+++.|+.++.+++|+++|.|++++.++++++.++|+.+++++
T Consensus 156 ~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~ie 235 (373)
T PLN02951 156 KEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRFIE 235 (373)
T ss_pred HhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999988889999999999999997569999999999999999999999999999999999
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEeccccee
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~ 240 (298)
++|+++..|.....++..++++.+.+.|+.+.........++.+|.++++.+.+++|.+.+.+||++|++++|++||.+.
T Consensus 236 ~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s~~FC~~CnRlRltadG~l~ 315 (373)
T PLN02951 236 FMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLK 315 (373)
T ss_pred cccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEEEECCCCeEEEEEcCCcccccccCCeEEEccCCcEE
Confidence 99998877776677899999999999886444443333467889999988899999999999999999999999999999
Q ss_pred ecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 241 pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
||.+.+.+++|+..+++|.+++.+.+.|+.++++||+.|+..........|.|+.+||
T Consensus 316 ~CL~~~~~~dl~~~l~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~m~~iGG 373 (373)
T PLN02951 316 VCLFGPSEVSLRDALRSGADDDELREIIGAAVKRKKAAHAGMFDLAKTANRPMIHIGG 373 (373)
T ss_pred ecCCCCCCcChHHHHhcCCCHHHHHHHHHHHHHhccccccccccccCCCcccccccCC
Confidence 9999999999999999998899999999999999999997432222223599999998
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=347.78 Aligned_cols=293 Identities=44% Similarity=0.725 Sum_probs=268.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||+..+.+.++...||+||+.++++.+.+.|+..|.||||||||++|+.+|++.+++. ++..++++|||++|.+....|
T Consensus 29 m~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~L 107 (322)
T COG2896 29 MPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADL 107 (322)
T ss_pred CCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHH
Confidence 7888799999999999999999999999999999999999999999999999999986 777899999999999999999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+++|++.|+||||+.+++.|.++++.+.+++|+++|+.+.++|+.+|++|+|+++|.|++|+.++++|+.++|+.+++++
T Consensus 108 k~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE 187 (322)
T COG2896 108 KEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIE 187 (322)
T ss_pred HHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEE
Confidence 99999999999999999999999998889999999999999999779999999999999999999999999999999999
Q ss_pred eecCCC-CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccce
Q 022377 161 FMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239 (298)
Q Consensus 161 ~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v 239 (298)
+||.+. ..|.....++..++.+.+.+.+ .+.+.......+..+|..++.. .++++.+.++.||+.|+++++++||.+
T Consensus 188 ~m~~g~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~~~~~~-~ig~I~p~~~~FC~~CnR~Rlt~dGkl 265 (322)
T COG2896 188 LMPLGEGNSWRLDKYLSLDEILRKLEERA-TLLPVRKRLHGRAKYFIHPDGG-EIGFIAPVSNPFCATCNRLRLTADGKL 265 (322)
T ss_pred EeecCcccchhhhccccHHHHHHHHHhhc-cccccccccCCCceEEEeCCCc-EEEEEcCCCchhhhhcceeeeccCCeE
Confidence 999985 5576667899999999999966 4444443555677888887754 899999999999999999999999999
Q ss_pred eecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 240 ~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+||.+.+..+++++.++++...+.+.+.|+.++++|+++|.+...-.. -+.|+.+||
T Consensus 266 ~~CL~~~~~~dlr~~lr~~~~~~~l~~~~~~a~~~r~~~~~~~~~~~~--~~~m~~~gg 322 (322)
T COG2896 266 KPCLFREDGIDLRDLLRSGASDEELVEAIREALRRRPPYHKLHRGNTG--RREMSYIGG 322 (322)
T ss_pred EeccCCCcCcchhhhhcccccHHHHHHHHHHHHHhCCCCccccccccC--ceeeeecCC
Confidence 999999999999999998887789999999999999999998877333 899999998
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=356.73 Aligned_cols=292 Identities=37% Similarity=0.553 Sum_probs=258.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
..+.++...|+.|++.++++++.+.|+..|.|+|||||+++++.++++++++..++..+.|+|||+++++.++.|+++|+
T Consensus 36 ~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl 115 (329)
T PRK13361 36 PCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGL 115 (329)
T ss_pred CCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCC
Confidence 44556677899999999999999999999999999999999999999999886455348999999999889999999999
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD 165 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~ 165 (298)
+.|+||||+.+++.|+++++.++|++++++|+.++++|+.++.+++|++++.|.+++.++++++.++|+++++++++|.+
T Consensus 116 ~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~~ie~mP~g 195 (329)
T PRK13361 116 KRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFIEEMPLG 195 (329)
T ss_pred CeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEEEEecccCC
Confidence 99999999999999999999888999999999999999867999999998899999999999999999999999999998
Q ss_pred CC-CCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceeecCC
Q 022377 166 GN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLF 244 (298)
Q Consensus 166 ~~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~pC~~ 244 (298)
.. .|.....++.+++.+.+.+.++ +.........++.+|.++++.+.+++|++.+.+||+.|++++|++||.++||.+
T Consensus 196 ~~~~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ig~I~~~s~~fC~~Cnr~rlt~~G~l~~Cl~ 274 (329)
T PRK13361 196 EIDERRRARHCSSDEVRAIIETRYP-LTPSNKRTGGPARYYTMADSPIHIGFISPHSHNFCHECNRVRVTAEGQLLLCLG 274 (329)
T ss_pred CccchhhccCcCHHHHHHHHHHhCC-cccCCCCCCCCCeEEEECCCCeEEEEEcCCCccccccCCeEEEccCCcEEecCC
Confidence 64 4656677899999999988874 332222234567889899888999999999999999999999999999999999
Q ss_pred CCCCCCcchHhhcCCCHH-HHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 245 GPSEVSLRDPLRQNASDD-ELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
...+++|+..+++|.+.+ .+.+.|+.++++||+.|++..+......|.|+.+||
T Consensus 275 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~m~~iGG 329 (329)
T PRK13361 275 NEHASDLRSILREGPGDIERLKAAILAAINLKPKGHHFDDNGQVQILRFMNATGG 329 (329)
T ss_pred CCCCcchHHHHhcCCCcHHHHHHHHHHHHHcCccccCcccccCCCCcccccccCC
Confidence 999999999999887774 799999999999999998764333334699999998
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=338.91 Aligned_cols=292 Identities=43% Similarity=0.722 Sum_probs=254.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
.++.++...|+.+++.++++.+.+.|+..|.|+|||||+++++.++++++++..++..+.|+|||+++++.++.|+++|+
T Consensus 34 ~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl 113 (334)
T TIGR02666 34 LDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGL 113 (334)
T ss_pred CCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCC
Confidence 34455678899999999999999999999999999999999999999999885577349999999999889999999999
Q ss_pred CeEEEecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHcCCCC-EEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeec
Q 022377 86 TSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~-v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
+.|+||+|+.+++.|+.+++ .++|++++++|+.++++|+ . +.+++|+++|.|++++.++++++.++|+.+++++++|
T Consensus 114 ~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~-~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~mp 192 (334)
T TIGR02666 114 KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGL-EPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRFIELMP 192 (334)
T ss_pred CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 99999999999999999985 4579999999999999999 6 9999999988999999999999999999999999999
Q ss_pred CCCC-CCcccCCCCHHHHHHHHHHhCCCceecCC-CCCCCcceEE--eCCCCeeEEEEeCCCccccCCCCeEEEecccce
Q 022377 164 FDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQD-HPTETAKNFK--IDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239 (298)
Q Consensus 164 ~~~~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v 239 (298)
.+.. .|.....++.+++++.+.+.++.+..... ....+..+|. +++..+.++++++.+.++|+.|++++|+|||.+
T Consensus 193 ~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~cnr~r~t~dG~l 272 (334)
T TIGR02666 193 LGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPAPAYRWRLPGGKGRIGFISPVSDPFCGTCNRLRLTADGKL 272 (334)
T ss_pred CCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCceeeeeecCCCCeEEEEEccCCcccccccCEEEEccCCCE
Confidence 8765 46666678899999999988754443211 2234566776 777778999999999999999999999999999
Q ss_pred eecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCcccccc---ccccccccccC
Q 022377 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAK---TANRPMIHIGG 298 (298)
Q Consensus 240 ~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 298 (298)
+||.+.+.+++|++.+++|.+++.+.+.|+.++++||+.|++.-..+. ...|.|+.+||
T Consensus 273 ~~Cl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~m~~igg 334 (334)
T TIGR02666 273 RLCLFADDGVDLRPLLRGGASDALLEAIIQAILQKKPEGHSFLRFTSPANKRRKRAMSQIGG 334 (334)
T ss_pred EEccCCCCCCchHHHHhcCCCHHHHHHHHHHHHHcCCcccCcccccccccCCCcccccccCC
Confidence 999999999999999998888999999999999999999987521111 12589999998
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=334.71 Aligned_cols=290 Identities=43% Similarity=0.681 Sum_probs=255.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
.+.++...|+.+++.++++.+.+.|+..|.|+|||||+++++.++++++++..+...+.++|||+++++.++.|.++|++
T Consensus 41 ~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~ 120 (331)
T PRK00164 41 PFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLD 120 (331)
T ss_pred CCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCC
Confidence 34566788999999999999999999999999999999999999999998853443599999999998889999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCCC
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDG 166 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~~ 166 (298)
.|+||||+.+++.|+.+++..++++++++|+.+++.|+.++.+++|+++|.|.+++.++++++.++|+.+++++++|.+.
T Consensus 121 ~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~ 200 (331)
T PRK00164 121 RVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGE 200 (331)
T ss_pred EEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCC
Confidence 99999999999999999998889999999999999987579999999988999999999999999999999999999876
Q ss_pred C-CCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceeecCCC
Q 022377 167 N-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFG 245 (298)
Q Consensus 167 ~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~pC~~~ 245 (298)
. .|......+.+++.+.+.+......... ....+..+|.+++..+.++++.+.+.++|+.|++++|++||.++||.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~l~~Cl~~ 279 (331)
T PRK00164 201 GNEWFRKHHLSGAEIRARLAERGWTLQPRA-RSGGPAQYFRHPDYGGEIGLIAPVTHDFCASCNRLRLTADGKLHLCLFA 279 (331)
T ss_pred CcchhhhcCCCHHHHHHHHHhccCcccccC-CCCCCCEEEEECCCCeEEEEEeCCCCcccccCCeEEEcCCCcEEEcCCC
Confidence 4 5766677889999999988721232222 2246788888888888999999999999989999999999999999999
Q ss_pred CCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 246 PSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+.+++|+..+++|..++.+.+.|+.++.+||+.|++.-. .....|.|+.+||
T Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~-~~~~~~~m~~igg 331 (331)
T PRK00164 280 EDGVDLRDLLRSGADDEELAAAIREALQNKPEGHGLHDG-NTGPTRHMSYIGG 331 (331)
T ss_pred CCCcCHHHHHhcCCCHHHHHHHHHHHHHcCccccCcccc-cCCCcccccccCC
Confidence 999999999998888999999999999999999987532 2334699999998
|
|
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=293.34 Aligned_cols=295 Identities=66% Similarity=1.035 Sum_probs=282.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||++|...+++++.++.+++.++.+.+...++..+.|+||||+.++|+.+++..+.+..+++.+.|+|||..+.+.+-++
T Consensus 29 Mpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~i~~g~~~l~gLks~~ITtng~vl~R~lp~l 108 (323)
T KOG2876|consen 29 MPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVPIVAGLSSLPGLKSIGITTNGLVLARLLPQL 108 (323)
T ss_pred chhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccchhhhhhcccchhhhceeccchhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999988998899999999888899999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
.+++++.+++|+|...++.+..+.++.+|.+++..++...+.|..++.++++++++.|.+++-+++.+-....+++++++
T Consensus 109 hkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfIe 188 (323)
T KOG2876|consen 109 HKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDEVFDFVLLTRMRPLDVRFIE 188 (323)
T ss_pred HhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCcccceeeecCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999889999999999999999999998888889999999
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEeccccee
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~ 240 (298)
|||+.+..|.....+++.+.++.+.+.++...++...+....+-|.+++..+.++++.....++|+.|+++.+++||++-
T Consensus 189 ~mpf~gn~~~t~~lIpy~e~l~l~~~~~d~~~~l~~e~s~T~Ka~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDgnlk 268 (323)
T KOG2876|consen 189 FMPFDGNKWNTKSLIPYKEMLDLIVKPWDFSVRLPDEPSDTAKAYKIDGFQGQVSFITSMSEHFCGTCNRLRITADGNLK 268 (323)
T ss_pred ecccCCCcccccccccHHHHHHHHhccCchhhcCCCCCCccccccccccccceEEeehhhHHHHHhhhhhheEeccCcEE
Confidence 99999999999999999999999999998888888888888899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 241 pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
-|.+++.++++++.++.|.+++.|.+++..|+.+|...|. +....++|||+++||
T Consensus 269 vcl~G~Se~slRd~~r~~~s~e~l~~~i~~av~~kk~~ha---~~~~~~~~p~~~~~~ 323 (323)
T KOG2876|consen 269 VCLFGNSEVSLRDRLRCGASDEQLSEIIGAAVGRKKAQHA---PLSPLANRPMILIGG 323 (323)
T ss_pred EeecCCccchhhhhhhcCCCHHHHHHHHHHHhhhhhhhcc---cccCCCCCCeeccCC
Confidence 9999999999999999999999999999999999999999 778999999999997
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=295.02 Aligned_cols=262 Identities=37% Similarity=0.565 Sum_probs=228.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
...|+.|++.++++.+...|+..|.|+|||||+++++.++++++++. ++..++++|||+++++.+..+.++|++.|+||
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iS 115 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRVNVS 115 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEEEEE
Confidence 46799999999999999999999999999999999999999999885 77459999999999888999999999999999
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCCCC-CCc
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWN 170 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~~~-~~~ 170 (298)
+|+.+++.|+.+++.+++++++++|+.++++|+.++.+++|+++|.|.+++.++++++.++|+.+++++++|.+.. .|.
T Consensus 116 ld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~~~~ie~~p~~~~~~~~ 195 (302)
T TIGR02668 116 LDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAILQLIELMPPGEGEKEF 195 (302)
T ss_pred ecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEEEeECCCCccch
Confidence 9999999999999988899999999999999983499999999999999999999999999999999999998754 344
Q ss_pred ccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCc-cccCCCCeEEEecccceeecCCCCC-C
Q 022377 171 VKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTE-HFCAGCNRLRLLADGNFKVCLFGPS-E 248 (298)
Q Consensus 171 ~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~I~~dG~v~pC~~~~~-~ 248 (298)
.....+..++.+.+.+.+...... .... ..+|.+++. +.++++.+.+. .+|++|++++|++||.++||.+.+. +
T Consensus 196 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~-~~~~~~~~~-~~~g~i~~~~~~~fC~~c~r~r~t~dG~l~~Cl~~~~~~ 271 (302)
T TIGR02668 196 KKYHEDIDPIEEELEKMADRVRTR--RMHN-RPKYFIPGG-VEVEVVKPMDNPVFCAHCTRLRLTSDGKLKTCLLRDDNL 271 (302)
T ss_pred hhceecHHHHHHHHHHhccccccc--CCCC-CcEEEeCCC-eEEEEECccCCCCccccCCeEEEcCCCCEEECCCCCCCC
Confidence 445577888888888765322211 1112 455667764 78999999998 5999999999999999999999984 7
Q ss_pred CCcchHhhcCCCHHHHHHHHHHHHHhhhhhc
Q 022377 249 VSLRDPLRQNASDDELREIIGAAVKRKKAAH 279 (298)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (298)
++|++.+++|.+.+ +.+.++.+++.|+++.
T Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~ 301 (302)
T TIGR02668 272 VDILDALRNGEDDE-LREAFREAVARREPYF 301 (302)
T ss_pred cchHHHHhcCCcHH-HHHHHHHHHHcccccc
Confidence 99999999888777 9999999999999864
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=262.16 Aligned_cols=270 Identities=20% Similarity=0.255 Sum_probs=191.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeE
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSV 88 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v 88 (298)
.+..+|+.+++.++++++.+.|+..|.|+||||||++++.++++++++. ++. +.|+|||+++ ++.++.|.+.+++.|
T Consensus 32 ~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~-g~~-~~l~TNG~ll~~e~~~~L~~~g~~~v 109 (358)
T TIGR02109 32 RRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRL-GLY-TNLITSGVGLTEARLDALADAGLDHV 109 (358)
T ss_pred cccCCCCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHc-CCe-EEEEeCCccCCHHHHHHHHhCCCCEE
Confidence 3467899999999999999999999999999999999999999999984 885 9999999998 568899999999999
Q ss_pred EEecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 89 NISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
+|||||.++++|+++|+. ++|++++++++.++++|+ ++.+++|+++ .|.++++++++++.++|++ +.+....+.+.
T Consensus 110 ~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~-~v~v~~vv~~-~N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~ 187 (358)
T TIGR02109 110 QLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL-PLTLNFVIHR-HNIDQIPEIIELAIELGADRVELATTQYYGW 187 (358)
T ss_pred EEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCC-ceEEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEEeeeccCc
Confidence 999999999999999986 469999999999999999 9999999998 7999999999999999985 33333333333
Q ss_pred CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCCC--eEEEecccceeecC
Q 022377 167 NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGCN--RLRLLADGNFKVCL 243 (298)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~~--~~~I~~dG~v~pC~ 243 (298)
.........+..+.++...+....+... ........+..+.+. ......| +++. .+.|+|||+|+||.
T Consensus 188 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~C~~~~g~~~~~I~~dG~V~pC~ 258 (358)
T TIGR02109 188 ALLNRAALMPTRAQLEEATRIVEEARER--LKGGLVIDYVVPDYY-------AERPKACMGGWGRVFLNVTPAGKVLPCH 258 (358)
T ss_pred hhcchhhcCCCHHHHHHHHHHHHHHHHH--hcCCCceEEeCCcch-------hhchHHHhcccCceEEEECCCCCEecCC
Confidence 2222212222222121111110000000 000001111111110 0112357 4443 58899999999998
Q ss_pred CCCC--CCCcchHhhcCCCHHHHHHHHHHH-HHhhhhhccCccccccccccccccccC
Q 022377 244 FGPS--EVSLRDPLRQNASDDELREIIGAA-VKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 244 ~~~~--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+... ++.+ +|+.+++|.+||.+. ..++-+.... ....|..|.+...|+|
T Consensus 259 ~~~~~~~~~~-----GNi~~~~l~eiw~~~~~~~~~r~~~~-~~~~C~~C~~~~~C~G 310 (358)
T TIGR02109 259 AAEQIPGLSF-----PNVREHSLSEIWYKSPAFNAYRGTDW-MPEPCRSCERKERDFG 310 (358)
T ss_pred ccccCCCccC-----CCccCCCHHHHhcCCHHHHhhcCccc-cCCCCCCcccccccCC
Confidence 7532 2444 556667899999863 4554443332 3458999999999965
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=262.01 Aligned_cols=270 Identities=23% Similarity=0.291 Sum_probs=192.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeE
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSV 88 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v 88 (298)
....+|+.+++.++++++.+.|+..|.|+||||||++++.++++++++. ++. +.|+|||+++ ++.++.|++.+++.|
T Consensus 41 ~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~-g~~-~~i~TNG~ll~~~~~~~L~~~g~~~v 118 (378)
T PRK05301 41 RHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHAREL-GLY-TNLITSGVGLTEARLAALKDAGLDHI 118 (378)
T ss_pred cccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHc-CCc-EEEECCCccCCHHHHHHHHHcCCCEE
Confidence 3467899999999999999999999999999999999999999999984 885 9999999998 468899999999999
Q ss_pred EEecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 89 NISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
+|||||.++++|+.+|+.. +|++++++++.+++.|+ ++.+++|+++ .|.+++.++++++.++|++ +.+..+.+.+.
T Consensus 119 ~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~-~v~i~~vv~~-~N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~ 196 (378)
T PRK05301 119 QLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY-PLTLNAVIHR-HNIDQIPRIIELAVELGADRLELANTQYYGW 196 (378)
T ss_pred EEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCC-ceEEEEEeec-CCHHHHHHHHHHHHHcCCCEEEEecccccCh
Confidence 9999999999999999875 79999999999999999 9999999998 7999999999999999985 33333333332
Q ss_pred CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCC--CeEEEecccceeecC
Q 022377 167 NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGC--NRLRLLADGNFKVCL 243 (298)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~--~~~~I~~dG~v~pC~ 243 (298)
........++..+.++.+.+....+... ........+..+.+. ......| +++ ..+.|+|||+|+||.
T Consensus 197 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~C~~g~g~~~~~I~~dG~V~pC~ 267 (378)
T PRK05301 197 ALLNRAALMPTREQLERAERIVEEARER--LGGRLKIDFVVPDYY-------EERPKACMGGWGRVFLNVTPDGTVLPCH 267 (378)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHHHHH--hcCCCceEEeCcchh-------hcccHhhhcccCceEEEECCCCCEEeCc
Confidence 2222222223222222221111000000 000001112222211 0112356 443 458899999999998
Q ss_pred CCCC--CCCcchHhhcCCCHHHHHHHHHHH-HHhhhhhccCccccccccccccccccC
Q 022377 244 FGPS--EVSLRDPLRQNASDDELREIIGAA-VKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 244 ~~~~--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+... ++.+ +|+.+++|.+||.++ ..++-+.... ....|..|.+...|+|
T Consensus 268 ~~~~~~~~~~-----GNi~~~sl~eIw~~s~~~~~~r~~~~-~~~~C~~C~~~~~C~G 319 (378)
T PRK05301 268 AARTIPGLAF-----PNVRDHSLAEIWYDSEAFNRFRGTDW-MPEPCRSCDEKEKDFG 319 (378)
T ss_pred chhhCCCCcC-----CCcCCCCHHHHhhcCHHHHHhhCccc-ccCCCCCCccccccCC
Confidence 7532 3444 455567899999853 3333332222 3457999999999966
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=234.67 Aligned_cols=253 Identities=19% Similarity=0.251 Sum_probs=184.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
..+|+.|++.+.++ +.|+..|.|+||||||||++.++++++++. ++. +.|+|||+++++.+..+.+++...|+||
T Consensus 56 ~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~-g~~-v~l~TNG~ll~~~~~~l~~~~~~~i~VS 130 (318)
T TIGR03470 56 KQRLSVEECLRAVD---ECGAPVVSIPGGEPLLHPEIDEIVRGLVAR-KKF-VYLCTNALLLEKKLDKFEPSPYLTFSVH 130 (318)
T ss_pred ccCCCHHHHHHHHH---HcCCCEEEEeCccccccccHHHHHHHHHHc-CCe-EEEecCceehHHHHHHHHhCCCcEEEEE
Confidence 45799999877766 457889999999999999999999999985 874 9999999999888899999888999999
Q ss_pred cCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCCC
Q 022377 92 LDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 169 (298)
Q Consensus 92 ldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~~ 169 (298)
|||. ++.|+.+++. +.|++++++|+.++++|+ ++.+++|++.+.|.+++.++++++.++|++ +.+....|++...
T Consensus 131 LDG~-~e~hd~~~~~~g~f~~~l~~I~~l~~~G~-~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~- 207 (318)
T TIGR03470 131 LDGL-REHHDASVCREGVFDRAVEAIREAKARGF-RVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP- 207 (318)
T ss_pred EecC-chhhchhhcCCCcHHHHHHHHHHHHHCCC-cEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccc-
Confidence 9997 5788888754 569999999999999999 999999987668999999999999999984 4444444444322
Q ss_pred cccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceeecCCCCCCC
Q 022377 170 NVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEV 249 (298)
Q Consensus 170 ~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~pC~~~~~~~ 249 (298)
.....++.++..+.+.+.+. ... ...+.+......+.++.......|.++..+.|+|.|++.||.....++
T Consensus 208 ~~~~~l~~~e~~~~~~~~~~-~~~--------~~~~~~~~s~~~l~~l~g~~~~~C~~~~~~~~~~~G~~~pC~~~~~~~ 278 (318)
T TIGR03470 208 DQDHFLGRRQTKKLFREVLS-NGN--------GKRWRFNHSPLFLDFLAGNQQYECTPWGNPTRNVFGWQKPCYLLNDGY 278 (318)
T ss_pred ccccccCHHHHHHHHHHHHh-hcc--------CCCCcccCCHHHHHHHcCCCCccccCCCCcccCccccccCceecCCcc
Confidence 22344566555554444321 111 000111100000111112233579888889999999999999654322
Q ss_pred CcchHhhcCCCHHHHHHHHHHHHHhhhhhccCcccccccccccccccc
Q 022377 250 SLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297 (298)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (298)
...++|++....|++..... |.-|..| |.|||
T Consensus 279 -----------~~~~~~~~~~~~w~~~~~~~---~~~c~~c--~~~~~ 310 (318)
T TIGR03470 279 -----------VPTFRELMEETDWDSYGTGK---DPRCANC--MVHCG 310 (318)
T ss_pred -----------hhhHHHHHhcCChhhcCCCC---CcchHHH--HHhhC
Confidence 25688999999998875444 5566666 77776
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=232.32 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=179.2
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEcCCccCccc-cH-HHHHHHHhccC--CCC-cEEEEeCccchH-hhHHHHHHcC
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIRLTGGEPTVRK-DI-EEACFHLSKLK--GLK-TLAMTTNGLTLA-RKLPKLKESG 84 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~~tGGEPll~~-~~-~~ii~~~~~~~--~~~-~v~i~TNG~ll~-~~~~~l~~~~ 84 (298)
..|+.+.+.++++.+.+. +...|.|+||||||+| ++ .++++++++.. ++. .++|+|||++++ +.++.|.+.+
T Consensus 37 ~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~ 116 (370)
T PRK13758 37 GIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENK 116 (370)
T ss_pred CCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcC
Confidence 479999999999877664 3457899999999996 65 48999988741 221 268999999995 5788888877
Q ss_pred CCeEEEecCCCCHHhhhhhc----CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFI 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~ 159 (298)
+ .|+|||||+ ++.|+..| +.++|++++++|+.|++.|+ ++.+.+|+++ .|.++++++++++.++|+. +.+.
T Consensus 117 ~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~-~~~i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~ 192 (370)
T PRK13758 117 F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKV-EFNILCVVTS-NTARHVNKIYKYFKEKDFKFLQFI 192 (370)
T ss_pred c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCC-CceEEEEecc-ccccCHHHHHHHHHHcCCCeEeee
Confidence 6 799999997 68899998 45679999999999999999 9999999998 7999999999999999984 3343
Q ss_pred e-eecCCCCCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccC--C-CC-eEEEe
Q 022377 160 E-FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCA--G-CN-RLRLL 234 (298)
Q Consensus 160 ~-~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~-~~-~~~I~ 234 (298)
. +.|.+.........++.+++.+.+...+......... . ..+.+......+..+.......|+ + |. .+.|+
T Consensus 193 ~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~I~ 268 (370)
T PRK13758 193 NCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDLWYEDFLN--G--NRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVE 268 (370)
T ss_pred eccCccccccCCCcCccCHHHHHHHHHHHHHHHHHhhcC--C--CcEEeehHHHHHHHHhCCCCCCCccccccCccEEEe
Confidence 2 3455433222223355555444333322100000000 0 001110000000000000112352 2 22 58999
Q ss_pred cccceeecCCCC-CCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 235 ADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 235 ~dG~v~pC~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
|||+|+||.... .++.+ +++.++++.++|......+...-.......|..|.+...|||
T Consensus 269 ~dG~V~pC~~~~~~~~~~-----GNI~~~~l~~i~~~~~~~~~~~~~~~~~~~C~~C~~~~~C~G 328 (370)
T PRK13758 269 SDGSVYPCDFYVLDKWRL-----GNIQDMTMKELFETNKNHEFIKSSFKVHEECKKCKWFPLCKG 328 (370)
T ss_pred cCCCEEeCCccccCCccc-----cCcCCCCHHHHHhCHHHHHHHHhhcccccccCCCCCcCccCC
Confidence 999999998654 34444 455567899999755332222212334568999999999965
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=232.02 Aligned_cols=271 Identities=16% Similarity=0.140 Sum_probs=179.1
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCE--EEEcCCccCcccc--HHHHHHHHhc---cCCCCcEEEEeCccchH-hhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDK--IRLTGGEPTVRKD--IEEACFHLSK---LKGLKTLAMTTNGLTLA-RKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~--v~~tGGEPll~~~--~~~ii~~~~~---~~~~~~v~i~TNG~ll~-~~~~~l~~ 82 (298)
...|+.+++.++|+++.+. +... +.|+||||||+++ +.++++.+++ ..++ .++|+|||++++ +.++.|.+
T Consensus 45 ~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i-~~~i~TNG~ll~~e~~~~l~~ 123 (412)
T PRK13745 45 KHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQI-DNCIQTNGTLLTDEWCEFFRE 123 (412)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCce-EEEEeecCEeCCHHHHHHHHH
Confidence 3469999999999998764 4444 5668999999997 3355554432 2466 488999999995 57888888
Q ss_pred cCCCeEEEecCCCCHHhhhhhc----CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IR 157 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~ 157 (298)
.++ .|+|||||+ ++.||..| |.++|++++++|+.|+++|+ .+.+.+|+++ .|.+++.++++++.++|++ +.
T Consensus 124 ~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi-~~~i~~vv~~-~n~~~~~e~~~~~~~lg~~~~~ 199 (412)
T PRK13745 124 NNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGV-EWNAMAVVND-FNADYPLDFYHFFKELDCHYIQ 199 (412)
T ss_pred cCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCC-CEEEEEEEcC-CccccHHHHHHHHHHcCCCeEE
Confidence 886 799999997 68899888 34679999999999999999 9999999998 8999999999999999984 55
Q ss_pred EEeeecC------CCC--------CC-cccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCc
Q 022377 158 FIEFMPF------DGN--------VW-NVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTE 222 (298)
Q Consensus 158 ~~~~~p~------~~~--------~~-~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (298)
+..+.|. +.. .. ..+..++.+++.+++.+.+....... .. ..+..+.. ..+........
T Consensus 200 ~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~fl~~lf~~w~~~~--~~--~~~i~~f~--~~~~~~~g~~~ 273 (412)
T PRK13745 200 FAPIVERIVSHQDGRHLASLAQQEGGELAPFSVTPEQWGNFLCTIFDEWVKED--VG--KYYIQLFD--STLANWVGEQP 273 (412)
T ss_pred EEeccCccccccccccccCcccccccccCCCccCHHHHHHHHHHHHHHHHHcc--CC--CeEEecHH--HHHHHHhCCCC
Confidence 5555552 110 00 01223566666666554442111100 00 00111100 00000001112
Q ss_pred ccc---CCCCe-EEEecccceeecCCCC-CCCCcchHhhcCCCHHHHHHHHHHHHHhh-hhhccCccccccccccccccc
Q 022377 223 HFC---AGCNR-LRLLADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRK-KAAHAGMFDIAKTANRPMIHI 296 (298)
Q Consensus 223 ~~C---~~~~~-~~I~~dG~v~pC~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 296 (298)
..| ..|+. ..|++||+||||.+.. .++.+ +|+.+++|.++|.....+. ...+.-....+|..|.+...|
T Consensus 274 ~~C~~~~~cg~~~~i~~nGdVypCd~~~~~e~~l-----GNI~~~sl~~i~~s~~~~~f~~~~~~~~~~~C~~C~~~~~C 348 (412)
T PRK13745 274 GVCSMAKHCGHAGVMEFNGDVYSCDHFVFPEYKL-----GNIYQQTLVEMMYSERQTAFGTMKYKSLPTQCKECEYLFAC 348 (412)
T ss_pred CcceecCCCCcceEEecCCcEEeccccccccccc-----CCcCCCCHHHHHhCHHHHHHHHhhhccCchhcCCCCccccc
Confidence 245 23443 4699999999998764 34555 4455678999997654322 111223567789999999999
Q ss_pred cC
Q 022377 297 GG 298 (298)
Q Consensus 297 ~~ 298 (298)
+|
T Consensus 349 ~G 350 (412)
T PRK13745 349 HG 350 (412)
T ss_pred CC
Confidence 43
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=202.04 Aligned_cols=269 Identities=26% Similarity=0.331 Sum_probs=191.4
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEE
Q 022377 12 PQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVN 89 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~ 89 (298)
..+++.++..++++++.+.+ ...+.|+||||++++++.++++++++..++ .+++.|||+++ .+.++++.+++++.|+
T Consensus 45 ~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d~~ei~~~~~~~~~~-~~~~~TnG~~~~~~~~~~l~~~g~~~v~ 123 (347)
T COG0535 45 PGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKGGI-RVSLSTNGTLLTEEVLEKLKEAGLDYVS 123 (347)
T ss_pred ccccCHHHHHHHHHHHHHcCCeeEEEEeCCCccccccHHHHHHHHhhcCCe-EEEEeCCCccCCHHHHHHHHhcCCcEEE
Confidence 68999999999999999999 899999999999999999999999964577 49999999766 4688999999999999
Q ss_pred EecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
||+|+.+++.|+.+||. +.|++++++++.+.+.|+ .+.+++++++ .|.++++++.+++.++|+ .+....++|.+..
T Consensus 124 iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~-~~~~~~~v~~-~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~ 201 (347)
T COG0535 124 ISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGI-LVVINTTVTK-INYDELPEIADLAAELGVDELNVFPLIPVGRG 201 (347)
T ss_pred EEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCC-eeeEEEEEec-CcHHHHHHHHHHHHHcCCCEEEEEEEeecccc
Confidence 99999999999999995 459999999999999999 6899999998 899999999999999997 4666788888766
Q ss_pred CCcccCCCCHHH--HHHHHHHhCCC-ceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCCCeEEEecccceeecC
Q 022377 168 VWNVKKLVPYAE--MLDTVVKKFPG-LRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGCNRLRLLADGNFKVCL 243 (298)
Q Consensus 168 ~~~~~~~~~~~e--~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~~~~~I~~dG~v~pC~ 243 (298)
.......++.++ ........... .... .. .....+..+.... .........| ++...+.|++||+|+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~i~~~G~v~pc~ 275 (347)
T COG0535 202 EENLELDLTPEEEELLLVLLLRSAKYLLRG--LP-VEAPLFYGPLLLD---FLFNGDPYECLAGRVSLAIDPDGEVYPCP 275 (347)
T ss_pred cccccccCCHHHHHHHHHHHHHHHhhcccc--ce-eccccccchhcch---hhccCccccccCCeEEEEECCCCCEecCc
Confidence 553222233322 11111111101 0000 00 0000010000000 0000111224 566678999999999999
Q ss_pred CCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 244 FGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+... + + +.++.+.++|+..++++.+.-.......|..|.+--.|||
T Consensus 276 ~~~~---~-----G-v~~~~~~~iw~~~~~~~~~~~~~~~~~~c~~c~~~~~c~g 321 (347)
T COG0535 276 FLPE---L-----G-VREESFKEIWEESLLNKLRERDELLEGSCGKCEYREYCGG 321 (347)
T ss_pred cccc---C-----c-cccCCHHHHHHHHHHHHhcCchhccCCcCCCCCCcccccc
Confidence 8876 3 3 4457899999988444333222222214888888777775
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=201.96 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=170.6
Q ss_pred CCCHHHHHHHHHHHHhCC-CCE--EEEcCCccCccc-cHHHHHHHHhc----cCCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSG-VDK--IRLTGGEPTVRK-DIEEACFHLSK----LKGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~-~~~--v~~tGGEPll~~-~~~~ii~~~~~----~~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
.||.|.++++++.+.+.. ... |+|+||||||.+ ++.+.+..+.+ ...+ ..+|+|||+++ ++.++.|++.+
T Consensus 36 ~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~~~~i-~~siqTNg~LL~~e~~e~l~~~~ 114 (378)
T COG0641 36 IMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQKYANGKTI-SNALQTNGTLLNDEWAEFLAEHD 114 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHHHHHHHHHHHHHHhcCCee-EEEEEEcccccCHHHHHHHHhcC
Confidence 699999999999988854 355 777899999995 46554444322 1234 36699999999 56788899988
Q ss_pred CCeEEEecCCCCHHhhhhhc----CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 85 LTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+ .|.|||||+ ++.||+.| |.++|++++++|+.|++.++ .+.+.+|+++ +|.+.+.++++++.+.|. +.+.
T Consensus 115 ~-~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v-~~~~~~vv~~-~n~~~~~ei~~~l~~~g~--~~i~ 188 (378)
T COG0641 115 F-LIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLELLQAHGV-DFNTLTVVNR-QNVLHPEEIYHFLKSEGS--KFIQ 188 (378)
T ss_pred c-eEEEeccCc-hHhccccccCCCCCccHHHHHHHHHHHHHcCC-cEEEEEEEch-hHhhCHHHHHHHHHHccc--ceEE
Confidence 8 799999997 89999999 77889999999999999999 9999999998 899999999999999884 3444
Q ss_pred eecCC---CCC-CcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEE-EEeCCC-----ccccCCCCe
Q 022377 161 FMPFD---GNV-WNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVS-FITSMT-----EHFCAGCNR 230 (298)
Q Consensus 161 ~~p~~---~~~-~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~C~~~~~ 230 (298)
|.|.- ... .......+.++..+++...+....+... ..+.+......+. ...+.. ...| |.+.
T Consensus 189 fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~------~~i~i~~f~~~~~~~~~~~~~~c~~~~~c-g~~~ 261 (378)
T COG0641 189 FIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDV------GRIFIQNFDQLLKAWLGPPGSLCIFSETC-GDEL 261 (378)
T ss_pred EEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcC------CeeeehhHHHHHHHhhCCCCcceeeeccc-Ccce
Confidence 45532 221 0112345555555555544422222110 0011110000000 000000 1123 3345
Q ss_pred EEEecccceeecCC-CCCCCCcchHhhcCCCHHHHHHHHHHHHHhh--hhhccCccccccccccccccccC
Q 022377 231 LRLLADGNFKVCLF-GPSEVSLRDPLRQNASDDELREIIGAAVKRK--KAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 231 ~~I~~dG~v~pC~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+ |+|+|++|||.+ ...++-++++.. +++..+..+..+.+ ...+.+... +|..|-+...|+|
T Consensus 262 ~-v~~nGdiy~C~~~~~~~~~~Gnl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~C~~C~~~~~C~G 325 (378)
T COG0641 262 V-VEPNGDIYSCDHFVYPEYKLGNIHE-----TSLAQMLASPQQQQFGADKQKGLSA-KCQRCEWLFLCHG 325 (378)
T ss_pred E-EcCCCCeecCcccccccceeccccc-----cchhhhhhhHHHHHHHHHhhhhhhh-hccCCCchhhhcC
Confidence 6 999999999954 234566655544 34544444442222 122333333 7888888888876
|
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=159.73 Aligned_cols=153 Identities=16% Similarity=0.289 Sum_probs=126.6
Q ss_pred CCCCCHHHHHHHHHHHHhCC---CCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~---~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~ 85 (298)
..+++++++.+.++++.... ...|.|+|||||+++++. ++++++++. ++. +.++|||++. ++.+.++.+ .+
T Consensus 43 ~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~-g~~-~~i~TNG~~~~~~~~~~~ll~-~~ 119 (235)
T TIGR02493 43 GTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKEL-GIH-TCLDTSGFLGGCTEAADELLE-YT 119 (235)
T ss_pred CEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHC-CCC-EEEEcCCCCCccHHHHHHHHH-hC
Confidence 46799999998888776532 247999999999999965 999999984 885 9999999764 677777777 57
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCC--CHhHHHHHHHHHhhCCC--eeEEEee
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF--NDDEICDFVELTRDRPI--NIRFIEF 161 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~--n~~~i~~i~~~~~~~g~--~~~~~~~ 161 (298)
+.|.||+|+.+++.|+++++. +|++++++++.+++.|+ ++.++++++++. |.++++++++++.++|. .+.+..|
T Consensus 120 d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~-~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~ 197 (235)
T TIGR02493 120 DLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNK-PIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY 197 (235)
T ss_pred CEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCC-cEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCC
Confidence 899999999999999999986 89999999999999999 899999998864 56899999999999884 3445555
Q ss_pred ecCCCCCC
Q 022377 162 MPFDGNVW 169 (298)
Q Consensus 162 ~p~~~~~~ 169 (298)
.|.+...|
T Consensus 198 ~~~g~~~~ 205 (235)
T TIGR02493 198 HQLGVYKW 205 (235)
T ss_pred CcccHHHH
Confidence 55554434
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=161.23 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=135.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-----C-C--------------CCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEeC
Q 022377 11 KPQLLSLNEILRLAYLFVT-----S-G--------------VDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-----~-~--------------~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TN 69 (298)
.....++|++.+-+..... + | +..+.|+ +|||||+|++.++++++++. |+. +.|+||
T Consensus 89 ~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~-Gi~-~~L~TN 166 (322)
T PRK13762 89 EPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLYPYLPELIEEFHKR-GFT-TFLVTN 166 (322)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccchhhHHHHHHHHHHc-CCC-EEEECC
Confidence 3557888887665543311 1 2 4568898 69999999999999999995 995 999999
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
|++ .+.++.| ..+++.+.||||++++++|+++++. ++|++++++|+.+.+.+. ++.+++++.+|.|+++.++++
T Consensus 167 G~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~-~~~ir~tlv~g~Nd~e~~~~a 243 (322)
T PRK13762 167 GTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPSKKT-RTVIRITLVKGYNMHDPEGFA 243 (322)
T ss_pred CCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCC-CEEEEEEEECCcCccHHHHHH
Confidence 976 6778888 6689999999999999999999873 469999999999999999 999999999999999999999
Q ss_pred HHHhhCCCe-eEEEeeecCCCCCC--cccCCCCHHHHHHHHH
Q 022377 147 ELTRDRPIN-IRFIEFMPFDGNVW--NVKKLVPYAEMLDTVV 185 (298)
Q Consensus 147 ~~~~~~g~~-~~~~~~~p~~~~~~--~~~~~~~~~e~~~~i~ 185 (298)
+++.+.+++ +.+..|++.|...+ .....++.+++.+...
T Consensus 244 ~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~ 285 (322)
T PRK13762 244 KLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAK 285 (322)
T ss_pred HHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHH
Confidence 999998874 56667888776644 2234456655554433
|
|
| >PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=146.78 Aligned_cols=126 Identities=40% Similarity=0.785 Sum_probs=89.2
Q ss_pred CeeEEEeeecCCC-CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEE
Q 022377 154 INIRFIEFMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLR 232 (298)
Q Consensus 154 ~~~~~~~~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (298)
+.++|+++||.+. ..|.....++.+++++.+.+.+. ..........++.+|.+++..+.+++|++.+++||+.|++++
T Consensus 1 i~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~-~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~s~~FC~~CNRiR 79 (128)
T PF06463_consen 1 IDVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYE-LLPSEKRPNGPARYYRIPGGKGRVGFISPVSNPFCSSCNRIR 79 (128)
T ss_dssp -EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS--EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEE
T ss_pred CeEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCC-ccccccccCCcceEEEECCCCcEEEEEeCCCCCCCCcCCEEE
Confidence 3689999999984 56877788999999999999984 443334457889999999998899999999999999999999
Q ss_pred EecccceeecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhcc
Q 022377 233 LLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHA 280 (298)
Q Consensus 233 I~~dG~v~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (298)
|++||.+.||.+.+.+++|++.++++.+.+.|++.++.++++||++|+
T Consensus 80 lTsdG~l~~CL~~~~~idl~~~lr~~~~~~~l~~~i~~ai~~Kp~~h~ 127 (128)
T PF06463_consen 80 LTSDGKLKPCLFSNDGIDLRPLLRSGASDEELKEAIREAIARKPPRHH 127 (128)
T ss_dssp E-TTSEEESSSS-SS-EEHHHHHHTT--HHHHHHHHHHHHHT----HH
T ss_pred EccCccEEEcccCCCCcChhHHhhCCCCHHHHHHHHHHHHHChhhhcC
Confidence 999999999999999999999999998889999999999999999996
|
MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A. |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=167.70 Aligned_cols=151 Identities=24% Similarity=0.390 Sum_probs=127.8
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCEEEEcC-CccCcccc-HHHHHHHHhcc-CCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 12 PQLLSLNEILRLAYLFVTS--GVDKIRLTG-GEPTVRKD-IEEACFHLSKL-KGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~--~~~~v~~tG-GEPll~~~-~~~ii~~~~~~-~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
...||++++.+.++++... ++..|.|+| ||||++++ ..+.+..+++. .++. +.|+|||+++.+.+++|.+.|++
T Consensus 57 ~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~-i~lsTNG~~l~e~i~~L~~~gvd 135 (442)
T TIGR01290 57 SELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVK-LCLSTNGLMLPEHVDRLVDLGVG 135 (442)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCe-EEEECCCCCCHHHHHHHHHCCCC
Confidence 4679999999999888764 467899999 99999987 45777777764 4785 99999998888899999999999
Q ss_pred eEEEecCCCCHHhhhhh-----------cCCCc----HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 87 SVNISLDTLVPAKFEFL-----------TRRKG----HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~i-----------r~~~~----~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
.|.||||+.+++.|+++ +|... |++++++|+.+.+.|+ .+.+++++.+|.|++++.++++++++
T Consensus 136 ~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~-~v~v~~vlIpGiND~~i~~l~~~~~~ 214 (442)
T TIGR01290 136 HVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGI-LVKVNSVLIPGINDEHLVEVSKQVKE 214 (442)
T ss_pred eEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCC-eEEEEEEeeCCcCHHHHHHHHHHHHh
Confidence 99999999999999875 33222 7889999999999999 99999999999999999999999999
Q ss_pred CCCe-eEEEeeecC
Q 022377 152 RPIN-IRFIEFMPF 164 (298)
Q Consensus 152 ~g~~-~~~~~~~p~ 164 (298)
+|+. +.++.+.|.
T Consensus 215 lg~~~~nl~p~~~~ 228 (442)
T TIGR01290 215 LGAFLHNVMPLISA 228 (442)
T ss_pred CCCcEEEeecCCCc
Confidence 9874 344455543
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=162.55 Aligned_cols=153 Identities=18% Similarity=0.316 Sum_probs=127.4
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVT---SGVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~---~~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
..+++.+++.+.+.+... .....|.|+|||||+++++. ++++++++. |+. +.+.|||+++++.++++.+ .++.
T Consensus 103 g~~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~l~~l~~~~k~~-g~~-~~i~TnG~~~~~~~~~ll~-~~d~ 179 (295)
T TIGR02494 103 GEEMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLQACHER-GIH-TAVETSGFTPWETIEKVLP-YVDL 179 (295)
T ss_pred ccCCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchHHHHHHHHHHHHHc-CCc-EeeeCCCCCCHHHHHHHHh-hCCE
Confidence 456888888887765443 23468999999999999975 999999985 885 9999999987777888776 5788
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCC--C-eeEEEeee
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRP--I-NIRFIEFM 162 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g--~-~~~~~~~~ 162 (298)
+.||+|+.+++.|++++|. +++.++++|+.|.+.+. ++.++++++++.| .++++++++++.+++ + .+.+..+.
T Consensus 180 ~~isl~~~~~~~~~~~~g~-~~~~vl~~i~~l~~~~~-~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 180 FLFDIKHLDDERHKEVTGV-DNEPILENLEALAAAGK-NVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEeeccCChHHHHHHhCC-ChHHHHHHHHHHHhCCC-cEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 9999999999999999984 68999999999999999 9999999888765 468999999999987 4 55666666
Q ss_pred cCCCCCC
Q 022377 163 PFDGNVW 169 (298)
Q Consensus 163 p~~~~~~ 169 (298)
|.+..+|
T Consensus 258 ~~g~~~~ 264 (295)
T TIGR02494 258 RLGENKY 264 (295)
T ss_pred chhHHHH
Confidence 7665554
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=149.56 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHhC---CCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 11 KPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~---~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
...++|+|++.+.+.+-..+ +-..|+||||||+++++|. ++++.+++. |+. +.+.|||+.-.+.++.+.+ .+|
T Consensus 15 ~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~-gi~-~~leTnG~~~~~~~~~l~~-~~D 91 (213)
T PRK10076 15 IGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLW-GVS-CAIETAGDAPASKLLPLAK-LCD 91 (213)
T ss_pred cCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHc-CCC-EEEECCCCCCHHHHHHHHH-hcC
Confidence 35669999998877654332 3369999999999999975 999999994 996 9999999877778888887 599
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCC-eeEEEeeec
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPI-NIRFIEFMP 163 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~-~~~~~~~~p 163 (298)
.+.+++.+.+++.|.+++| .+.+.+++|++.+.+.|+ ++.+++++.||.|+ ++++++++++.++++ .+.+..|.|
T Consensus 92 ~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~-~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpyh~ 169 (213)
T PRK10076 92 EVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGV-NVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPFHQ 169 (213)
T ss_pred EEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecCCc
Confidence 9999999999999999998 568999999999999999 99999999999875 679999999998876 455566666
Q ss_pred CCCCC
Q 022377 164 FDGNV 168 (298)
Q Consensus 164 ~~~~~ 168 (298)
.+..+
T Consensus 170 ~g~~K 174 (213)
T PRK10076 170 YGEPK 174 (213)
T ss_pred cchhH
Confidence 65443
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=153.92 Aligned_cols=154 Identities=16% Similarity=0.263 Sum_probs=124.3
Q ss_pred CCCCCCHHHHHHHHHHHHhC---CCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcC
Q 022377 11 KPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESG 84 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~---~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~ 84 (298)
...++|.+++.+.+.+.... ....|.|+|||||+++++. ++++.+++ .|+. +.++|||++. ++.++.+.+ .
T Consensus 47 ~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~~~~l~~~~k~-~g~~-i~l~TNG~~~~~~~~~~~ll~-~ 123 (246)
T PRK11145 47 GGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKK-EGIH-TCLDTNGFVRRYDPVIDELLD-V 123 (246)
T ss_pred CCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcCHHHHHHHHHHHHH-cCCC-EEEECCCCCCcchHHHHHHHH-h
Confidence 35679999988777665432 2358999999999999975 99999998 5995 9999999875 467777776 4
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCC-C-eeEEEe
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRP-I-NIRFIE 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g-~-~~~~~~ 160 (298)
++.|.||+|+.+++.|+.++|. +.++++++++.+.+.|+ ++.+++++.+|.|++ +++++++|+.+++ + .+.++.
T Consensus 124 ~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~-~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~ 201 (246)
T PRK11145 124 TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQ-KTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLP 201 (246)
T ss_pred CCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEec
Confidence 8899999999999999999985 46899999999999999 999999999998874 6999999998875 2 344445
Q ss_pred eecCCCCCC
Q 022377 161 FMPFDGNVW 169 (298)
Q Consensus 161 ~~p~~~~~~ 169 (298)
|.|.+..+|
T Consensus 202 ~~~~~~~~~ 210 (246)
T PRK11145 202 YHELGKHKW 210 (246)
T ss_pred CCccchhHH
Confidence 555444433
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=143.46 Aligned_cols=138 Identities=22% Similarity=0.399 Sum_probs=116.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC-CCeE
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSV 88 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~-~~~v 88 (298)
.....|+.+++.+.+++... .+..|.|+|||||+++++.++++++++. ++. +.+.|||+ ..+.++++.++| ++.|
T Consensus 42 ~~~~~~~~~~i~~~i~~~~~-~~~~i~~sGGEPll~~~l~~li~~~~~~-g~~-v~i~TNg~-~~~~l~~l~~~g~~~~v 117 (191)
T TIGR02495 42 EGSGEIEVEFLLEFLRSRQG-LIDGVVITGGEPTLQAGLPDFLRKVREL-GFE-VKLDTNGS-NPRVLEELLEEGLVDYV 117 (191)
T ss_pred CCCCcCCHHHHHHHHHHhcC-CCCeEEEECCcccCcHhHHHHHHHHHHC-CCe-EEEEeCCC-CHHHHHHHHhcCCCcEE
Confidence 34467999999998887532 3679999999999999998999999994 885 99999997 467788888888 6899
Q ss_pred EEecCCCCHHhhhhhcCCC-cHH-HHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCC
Q 022377 89 NISLDTLVPAKFEFLTRRK-GHE-KVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRP 153 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~-~~~-~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g 153 (298)
++|+++. ++.|..+++.+ .+. +++++++.+.+.|+ .+.++++++++.+. ++++++++++.+.+
T Consensus 118 ~isl~~~-~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi-~~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 118 AMDVKAP-PEKYPELYGLEKNGSNNILKSLEILLRSGI-PFELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred EEeccCC-hHHHHHHHCCCCchHHHHHHHHHHHHHcCC-CEEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 9999995 67788887654 465 99999999999999 99999999987554 47999999998877
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-18 Score=151.41 Aligned_cols=157 Identities=22% Similarity=0.361 Sum_probs=128.7
Q ss_pred CCCCCHHHHHHHHHHH--------HhCCCCEEEEcC-CccCcccc-HHHHHHHHhcc-CC----CCcEEEEeCccchHhh
Q 022377 12 PQLLSLNEILRLAYLF--------VTSGVDKIRLTG-GEPTVRKD-IEEACFHLSKL-KG----LKTLAMTTNGLTLARK 76 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~--------~~~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~-~~----~~~v~i~TNG~ll~~~ 76 (298)
...|+.+|+...+-.+ ...++..|.|+| ||||++++ +.++++++++. .+ ...++++||| +.+.
T Consensus 146 ~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~G--l~~~ 223 (368)
T PRK14456 146 RRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVG--ITPE 223 (368)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCC--ChHH
Confidence 4468999987665322 124678999999 99999996 88999999874 11 2358899999 4456
Q ss_pred HHHHHHcCCC-eEEEecCCCCHHhhhhhcC----CCcHHHHHHHHHH-HHHcCCCCEEEEEEEecCCCHh--HHHHHHHH
Q 022377 77 LPKLKESGLT-SVNISLDTLVPAKFEFLTR----RKGHEKVMESINA-AIEVGYNPVKVNCVVMRGFNDD--EICDFVEL 148 (298)
Q Consensus 77 ~~~l~~~~~~-~v~iSldg~~~~~~~~ir~----~~~~~~v~~~i~~-l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~ 148 (298)
+++|.++|++ .++||||+++++.++++.+ ..+++.++++++. +.+.|. ++.+++++.+|.|++ ++.+++++
T Consensus 224 i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~-~V~ieyvLI~GvNDs~eda~~L~~~ 302 (368)
T PRK14456 224 IDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGE-PVTLVYMLLEGINDSPEDARKLIRF 302 (368)
T ss_pred HHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCC-eEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999986 8999999999999999962 3469999999985 556777 899999999999976 59999999
Q ss_pred HhhCCCeeEEEeeecCCCCCCcc
Q 022377 149 TRDRPINIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 149 ~~~~g~~~~~~~~~p~~~~~~~~ 171 (298)
+..+++.+++++|+|.+..+|..
T Consensus 303 l~~~~~~VnlIpyn~~~~~~~~~ 325 (368)
T PRK14456 303 ASRFFCKINLIDYNSIVNIKFEP 325 (368)
T ss_pred HhcCCCeeEEeeeccCCCCCCCC
Confidence 99988899999999988877754
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=141.52 Aligned_cols=172 Identities=25% Similarity=0.399 Sum_probs=141.2
Q ss_pred CCCCHHHHHHHHHHHHhCCC--CEEEEcC-CccCccccHHHHHHHHhccCCCCcEEEEeCccchH-hhHHHHHHcCCCeE
Q 022377 13 QLLSLNEILRLAYLFVTSGV--DKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSV 88 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~--~~v~~tG-GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l~~~~~~~v 88 (298)
-..++|.+...++...++.- -...+-| |||+++|.+.++++.++++++...++|.|||++|+ +.++.|.++|++++
T Consensus 139 y~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRi 218 (414)
T COG2100 139 YVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRI 218 (414)
T ss_pred eEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceE
Confidence 34677877777777666432 3567777 99999999999999999998888899999999994 68999999999999
Q ss_pred EEecCCCCHHhhhhhcCCC--cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-----eEEEee
Q 022377 89 NISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-----IRFIEF 161 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-----~~~~~~ 161 (298)
++|+|+.||+.-..+.|.. +.+++++.++.+.++++ .+-|.-+..||.|++|+..+++|+.+.|.+ .-+..|
T Consensus 219 NlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~i-dvlIaPv~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQky 297 (414)
T COG2100 219 NLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGI-DVLIAPVWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKY 297 (414)
T ss_pred EeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCC-CEEEeeeecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEe
Confidence 9999999999988888865 48999999999999999 999999999999999999999999998763 345567
Q ss_pred ecC--CCCCCcccCCCCHHHHHHHHHH
Q 022377 162 MPF--DGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 162 ~p~--~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
.|+ |+.. ......+..++..++.+
T Consensus 298 ipyk~GRkp-~~~k~~~fkeFYrwLre 323 (414)
T COG2100 298 IPYKFGRKP-VIAKVWPFKEFYRWLRE 323 (414)
T ss_pred eeecccCCc-cccccCcHHHHHHHHHH
Confidence 775 3333 22345667776655543
|
|
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=144.88 Aligned_cols=223 Identities=19% Similarity=0.280 Sum_probs=161.0
Q ss_pred CCCCHHHHHHHHHHHHhCC---CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH---hhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA---RKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~---~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~---~~~~~l~~~~~~ 86 (298)
-+.|.|++..+++.+.... ...|.|+||||+++.|+.++++.+++. |..+|.+.|||..+. +.+++|.++|+.
T Consensus 89 YEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~-g~~hVqinTnGirlA~~~~~~~~l~~ag~~ 167 (475)
T COG1964 89 YEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREE-GYDHVQLNTNGIRLAFDPEYVKKLREAGVN 167 (475)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhc-CccEEEEccCceeeccCHHHHHHHHhcCCc
Confidence 3689999999999998863 479999999999999999999999995 887899999999873 578999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC-
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD- 165 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~- 165 (298)
.|-+|+||.+++.|.+. +-.+-.+++.++++|...+.+--++.+|.|++++.++++|+..+---++-++|+|+.
T Consensus 168 tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n~dvVrgVnfQPVsl 242 (475)
T COG1964 168 TVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNNIDVVRGVNFQPVSL 242 (475)
T ss_pred EEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhccccccccceEEEEE
Confidence 99999999999987665 444555999999999845777778888999999999999998743235666777754
Q ss_pred --CCC-Ccc-cCCCCHHHHHHHHHHhCCCceecCC-CCCC-C--cceEE--eCCCCeeEEEEeCCCccccCCCCeEEEec
Q 022377 166 --GNV-WNV-KKLVPYAEMLDTVVKKFPGLRRMQD-HPTE-T--AKNFK--IDGHHGNVSFITSMTEHFCAGCNRLRLLA 235 (298)
Q Consensus 166 --~~~-~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~-~--~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~~I~~ 235 (298)
+.. ..+ ...++..+.++.+.++.++...... .+.+ . ...+. +.+. ....+ ..+..|+..+.+....
T Consensus 243 tGr~~~~~r~~~RITIPd~iK~ieeQT~g~i~~~d~yPvp~~~~isr~v~al~~~-~~~~~---s~h~~cg~atYvf~~~ 318 (475)
T COG1964 243 TGRMPQKERERFRITIPDAIKKIEEQTDGEISKDDWYPVPIAVPISRFVEALTGD-PKYEL---TSHPACGAATYVFYDE 318 (475)
T ss_pred ecccchhhhhheEeechhHHHhHHHhcCCeeeccccccCcchhhHHHHHHHHcCC-Cceee---eccCCCCceEEEEecC
Confidence 221 111 3456777888888888866544321 1111 0 00000 0000 00000 1234576666777777
Q ss_pred ccceeecCCC
Q 022377 236 DGNFKVCLFG 245 (298)
Q Consensus 236 dG~v~pC~~~ 245 (298)
++++.|=...
T Consensus 319 ~~r~iPit~f 328 (475)
T COG1964 319 EKKVIPITRF 328 (475)
T ss_pred CCcEEeeeee
Confidence 7899997543
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=127.91 Aligned_cols=139 Identities=33% Similarity=0.499 Sum_probs=124.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 9 TPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~-~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
......++.+++.+.++.+ ...+...+.++||||++++++.+++..+.+. .++ .+.+.|||+.+ .+.++.+.+.+
T Consensus 22 ~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~-~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 22 KNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGI-RISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp TCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTE-EEEEEEESTTHCHHHHHHHHHTT
T ss_pred CcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhcccc-ceeeeccccchhHHHHHHHHhcC
Confidence 4566779999999999999 5777788999999999999999888888774 377 59999999999 78999999999
Q ss_pred CCeEEEecCCCCHH-hhhhhcCCCcHHHHHHHHHHHHHcCCCC-EEEEEEEecCCCHhHHHHHHHHH
Q 022377 85 LTSVNISLDTLVPA-KFEFLTRRKGHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 85 ~~~v~iSldg~~~~-~~~~ir~~~~~~~v~~~i~~l~~~g~~~-v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
++.+.+|+++.+++ .++.+++..++++++++++.+.++|+ + +...+++.++.|.++++++++|+
T Consensus 101 ~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~-~~~~~~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 101 VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGI-PRVIIFIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTS-ETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCC-CcEEEEEEEeCCCCHHHHHHHhCcC
Confidence 99999999999998 77777766789999999999999999 5 88888999999999999999875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-16 Score=139.38 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-C--CCCEEEEcC-CccCccccHHHHHHHHhccCCCCcEEEE-eCccch--HhhHHHHHHc
Q 022377 11 KPQLLSLNEILRLAYLFVT-S--GVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMT-TNGLTL--ARKLPKLKES 83 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-~--~~~~v~~tG-GEPll~~~~~~ii~~~~~~~~~~~v~i~-TNG~ll--~~~~~~l~~~ 83 (298)
.+..+|.+++.+.+.+... + ....|+|+| |||++++++.++++++++. ++. +.+. |||+.+ .+.++++++.
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~-gi~-taI~~TnG~~l~~~e~~~~L~~~ 127 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDL-GLP-IHLGYTSGKGFDDPEIAEFLIDN 127 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhC-CCC-EEEeCCCCcccCCHHHHHHHHHc
Confidence 5678999999988877554 2 346899986 5788899999999999995 896 8886 998744 5689999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCCC-eeEEEee
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRPI-NIRFIEF 161 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g~-~~~~~~~ 161 (298)
+++.|.+|+|+.+++.|++++|.++.++++++++.+.+ ++ .+.+++++.||.|+ +++.++++++.++++ .+.+..|
T Consensus 128 gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~-~v~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~L~~y 205 (404)
T TIGR03278 128 GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SC-EVHAASVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404)
T ss_pred CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cC-CEEEEEEEeCCccCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 99999999999999999999998777999999999999 57 89999999999998 678899999999988 4555566
Q ss_pred ecCC
Q 022377 162 MPFD 165 (298)
Q Consensus 162 ~p~~ 165 (298)
.+.+
T Consensus 206 ~~~g 209 (404)
T TIGR03278 206 ANTE 209 (404)
T ss_pred cccc
Confidence 5443
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-16 Score=132.77 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=119.3
Q ss_pred CCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcH
Q 022377 31 GVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGH 109 (298)
Q Consensus 31 ~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~ 109 (298)
+...|++|||||+++.++. ++.+.+++. |+. +.+.|||+...+..+.+.+. +|.+.+.|++++++.|..+++...
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~-Gl~-~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~- 158 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKER-GLH-VALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN- 158 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHC-CCc-EEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc-
Confidence 5689999999999999966 999999995 996 99999998888888888885 999999999999998999998766
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEecCC--CHhHHHHHHHHHhhCCC--eeEEEeeecCCCCCCcc
Q 022377 110 EKVMESINAAIEVGYNPVKVNCVVMRGF--NDDEICDFVELTRDRPI--NIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 110 ~~v~~~i~~l~~~g~~~v~i~~vi~~~~--n~~~i~~i~~~~~~~g~--~~~~~~~~p~~~~~~~~ 171 (298)
+.++++++.+.+.|+ ++.+++++.||. +.+++.++++|+.+++. .+.+..|.|.+...|.+
T Consensus 159 ~~vl~~~~~l~~~g~-~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p 223 (260)
T COG1180 159 EPVLENLELLADLGV-HVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLP 223 (260)
T ss_pred HHHHHHHHHHHcCCC-eEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccC
Confidence 999999999999999 999999999987 45789999999998554 57777888877766643
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=137.17 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCEEEEcC-CccCcccc-HHHHHHHHhcc----CCCCcEEEEeCccchHhhHHHHHHc
Q 022377 13 QLLSLNEILRLAYLFVT---SGVDKIRLTG-GEPTVRKD-IEEACFHLSKL----KGLKTLAMTTNGLTLARKLPKLKES 83 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~---~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~----~~~~~v~i~TNG~ll~~~~~~l~~~ 83 (298)
..|+.+|+..-+-.+.. .++..|.|+| ||||++++ +.++++++.+. .+...++++|||. .+.+++|.+.
T Consensus 127 r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~--~~~i~~L~~~ 204 (343)
T PRK14469 127 RNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGI--PEKIIQLAEE 204 (343)
T ss_pred ccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCC--hHHHHHHHhh
Confidence 45888887665433322 3578999999 99999987 66999998642 2333599999995 6788999998
Q ss_pred CCC-eEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCee
Q 022377 84 GLT-SVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND--DEICDFVELTRDRPINI 156 (298)
Q Consensus 84 ~~~-~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~ 156 (298)
+++ .+.||||+++++.++.+++ ..+++.++++++.+.+. +. ++.+++++.+|.|+ +++.++++++...++.+
T Consensus 205 ~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~-~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~V 283 (343)
T PRK14469 205 GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGN-RVTIEYILIKGFNDEIEDAKKLAELLKGLKVFV 283 (343)
T ss_pred CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCC-eEEEEEEEECCCCCCHHHHHHHHHHHhccCcEE
Confidence 988 6999999999999998763 34699999999987765 66 89999999998887 47999999999888877
Q ss_pred EEEeeecCCC
Q 022377 157 RFIEFMPFDG 166 (298)
Q Consensus 157 ~~~~~~p~~~ 166 (298)
.+++|.|...
T Consensus 284 nLIpynp~~~ 293 (343)
T PRK14469 284 NLIPVNPTVP 293 (343)
T ss_pred EEEecCCCCc
Confidence 7777777543
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=136.02 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=122.8
Q ss_pred CCCCCHHHHHHHHHHHHh------CCCCEEEEcC-CccCcccc-HHHHHHHHhccCC--C--CcEEEEeCccchHhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVT------SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKG--L--KTLAMTTNGLTLARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~------~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~--~--~~v~i~TNG~ll~~~~~~ 79 (298)
...++.+|+..-+..+.. .++..|.|.| ||||++++ +.++++.+.+..+ + ..++++|||.. ..+.+
T Consensus 130 ~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~--~~i~~ 207 (355)
T TIGR00048 130 NRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVV--PKIDI 207 (355)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCch--HHHHH
Confidence 456899998775443322 2366799998 99999976 6699998875333 4 25999999965 56788
Q ss_pred HHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHH-HHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhC
Q 022377 80 LKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAA-IEVGYNPVKVNCVVMRGFND--DEICDFVELTRDR 152 (298)
Q Consensus 80 l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l-~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~ 152 (298)
|.+.+++ .+.||||+++++.|+++.+. .+++.++++++.+ .+.|. ++.+++++.+|.|+ +++.+++++++.+
T Consensus 208 l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~-~VtieyvLI~GvNDs~e~a~~La~llk~l 286 (355)
T TIGR00048 208 LADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGR-RVTFEYVLLDGVNDQVEHAEELAELLKGT 286 (355)
T ss_pred HHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8887776 57899999999999998764 3589999999865 45787 99999999999997 7899999999998
Q ss_pred CCeeEEEeeecCCCCCCc
Q 022377 153 PINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 153 g~~~~~~~~~p~~~~~~~ 170 (298)
++.+.+++|.|.+...|.
T Consensus 287 ~~~VnLIPynp~~~~~~~ 304 (355)
T TIGR00048 287 KCKVNLIPWNPFPEADYE 304 (355)
T ss_pred CCceEEEecccCCCCCCC
Confidence 888888888887665553
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=135.91 Aligned_cols=154 Identities=19% Similarity=0.333 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHHHHHHHHhC------CCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhHH
Q 022377 11 KPQLLSLNEILRLAYLFVTS------GVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLP 78 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~------~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~ 78 (298)
....||.+|+...+..+... .+..|.|+| ||||++++ +.+.++.+.+..++ ..++++|||. .+.++
T Consensus 117 ~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~--~~~i~ 194 (343)
T PRK14468 117 FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGI--PKGIR 194 (343)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCC--hHHHH
Confidence 35779999997766544332 256899998 99999986 55888877442343 2489999993 45778
Q ss_pred HHHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCHh--HHHHHHHHHhh
Q 022377 79 KLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDD--EICDFVELTRD 151 (298)
Q Consensus 79 ~l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~ 151 (298)
++.+.++. .+.||||+++++.++++++. .++++++++++.+.+ .+. ++.+++++.+|.|++ ++.++++++..
T Consensus 195 ~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~-~V~ieyvLI~GvNDs~e~~~~L~~ll~~ 273 (343)
T PRK14468 195 RLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGR-RVTLEYTMLKGVNDHLWQAELLADLLRG 273 (343)
T ss_pred HHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCC-eEEEEEEEeCCCcCCHHHHHHHHHHHhc
Confidence 88887766 69999999999999999843 358999999986655 455 899999999999875 58999999999
Q ss_pred CCCeeEEEeeecCCCC
Q 022377 152 RPINIRFIEFMPFDGN 167 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~ 167 (298)
+.+.+.+++|.|....
T Consensus 274 ~~~~VnLIPynp~~~~ 289 (343)
T PRK14468 274 LVSHVNLIPFNPWEGS 289 (343)
T ss_pred CCcEEEEEcCCCCCCC
Confidence 8888888877776543
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=134.93 Aligned_cols=159 Identities=23% Similarity=0.308 Sum_probs=124.8
Q ss_pred CCCCCCCHHHHHHHHHHHHh------CCCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhH
Q 022377 10 PKPQLLSLNEILRLAYLFVT------SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKL 77 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~------~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~ 77 (298)
.....|+.+|+..-+..... .++..|.|+| ||||++++ +.++++.+++..|+ ..++|+|||.. ..+
T Consensus 132 ~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~--~~i 209 (356)
T PRK14455 132 GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIA--PKI 209 (356)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCch--HhH
Confidence 34667999999875543221 2467899997 99999865 67999999873355 14899999964 345
Q ss_pred HHHHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH--hHHHHHHHHHh
Q 022377 78 PKLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND--DEICDFVELTR 150 (298)
Q Consensus 78 ~~l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~--~~i~~i~~~~~ 150 (298)
..+.+.++. .+.+|||+++++.++++.+. .+++.++++++.+.+. +. ++.+++++.+|.|+ +++.++++++.
T Consensus 210 ~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~-~v~iey~lI~gvNDs~ed~~~La~ll~ 288 (356)
T PRK14455 210 YDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNR-RVTFEYILLGGVNDQVEHAEELADLLK 288 (356)
T ss_pred HHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCC-eEEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 566665543 46799999999999987763 4589999999988774 55 89999999999998 68999999999
Q ss_pred hCCCeeEEEeeecCCCCCCcc
Q 022377 151 DRPINIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~~~ 171 (298)
.++..+.+++|.|.+..+|..
T Consensus 289 ~l~~~VnLIPynp~~~~ky~~ 309 (356)
T PRK14455 289 GIKCHVNLIPVNPVPERDYVR 309 (356)
T ss_pred cCCCcEEEEecCcCCCCCCcC
Confidence 988888889999987776654
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=135.75 Aligned_cols=155 Identities=21% Similarity=0.357 Sum_probs=124.2
Q ss_pred CCCCCHHHHHHHHHHHH----hC--C---CCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhh
Q 022377 12 PQLLSLNEILRLAYLFV----TS--G---VDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARK 76 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~----~~--~---~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~ 76 (298)
...||.+|+...+.... .. | +..|.|+| ||||++++ +.+.++.+++..|+ ..++|+|||. .+.
T Consensus 127 ~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~--~~~ 204 (354)
T PRK14460 127 ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI--EKG 204 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCC--hHH
Confidence 45799999887663222 11 2 57899998 99999987 56999988764354 1599999996 567
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCHh--HHHHHHHHHh
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAI-EVGYNPVKVNCVVMRGFNDD--EICDFVELTR 150 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~ 150 (298)
++.|.+.++..+.||||+++++.++++.+.. +++.++++++... +.+. ++.+++++.+|.|++ ++.++++++.
T Consensus 205 i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~-~v~iey~LI~GvNDs~ed~~~l~~~l~ 283 (354)
T PRK14460 205 LRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRE-RVTFEYLLLGGVNDSLEHARELVRLLS 283 (354)
T ss_pred HHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCC-eEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 8899998988999999999999999997653 5899999888654 4566 899999999999985 7999999999
Q ss_pred hCCCeeEEEeeecCCCCCC
Q 022377 151 DRPINIRFIEFMPFDGNVW 169 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~ 169 (298)
.++..+.+++|.|..+..|
T Consensus 284 ~~~~~VnLIpyn~~~g~~y 302 (354)
T PRK14460 284 RTKCKLNLIVYNPAEGLPY 302 (354)
T ss_pred cCCCcEEEEcCCCCCCCCC
Confidence 9888888888888755555
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=126.28 Aligned_cols=157 Identities=20% Similarity=0.324 Sum_probs=131.8
Q ss_pred CCCCCHHHHHHHHHHHHhCC-----CCEEEEcCCccCccc--cHHHHHHHHhccC----CCCcEEEEeCccch-HhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSG-----VDKIRLTGGEPTVRK--DIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~-----~~~v~~tGGEPll~~--~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~~ 79 (298)
...++.+++.+.++.+.+.+ +..+.|+||||++++ .+.++++++++.. +. .+.+.|||.++ ++.++.
T Consensus 27 ~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tn~~~~~~~~~~~ 105 (216)
T smart00729 27 LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDV-EITIETRPGTLTEELLEA 105 (216)
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCcccCCHHHHHH
Confidence 56678888888888875543 467899999999998 5789999998853 34 48899998877 568999
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC-CCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG-YNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g-~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|.+++++.+.+|+++.+++.++.+++..++++++++++.++++| + .+.+.+++. ++.+.+++.++++++.+.|++ +
T Consensus 106 l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 184 (216)
T smart00729 106 LKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPI-KVSTDLIVGLPGETEEDFEETLKLLKELGPDRV 184 (216)
T ss_pred HHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCc-ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999888888999999999999999 7 777766554 347899999999999999985 7
Q ss_pred EEEeeecCCCCCCc
Q 022377 157 RFIEFMPFDGNVWN 170 (298)
Q Consensus 157 ~~~~~~p~~~~~~~ 170 (298)
.+..++|..++.+.
T Consensus 185 ~~~~~~p~~~t~~~ 198 (216)
T smart00729 185 SIFPLSPRPGTPLA 198 (216)
T ss_pred EeeeeeeCCCChHH
Confidence 88889988776554
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-15 Score=131.41 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=126.3
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCccCcc--ccHHHHHHHHhccCCCCcEEEEe-----Cccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVR--KDIEEACFHLSKLKGLKTLAMTT-----NGLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGEPll~--~~~~~ii~~~~~~~~~~~v~i~T-----NG~ll-~~~~~~l~~ 82 (298)
...++.+++.++++.+.+. ++..|.|||||||++ +++.++++.+++...+..+.+.| |+.++ ++.++.|.+
T Consensus 116 ~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~ 195 (321)
T TIGR03822 116 LGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT 195 (321)
T ss_pred cCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH
Confidence 3578999999999999864 789999999999996 46889999999853343456766 56666 567899999
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCe-eEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPIN-IRFI 159 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~-~~~~ 159 (298)
+|.. +.||+|+.++. .+ ++.++++++.|+++|+ .+.+++|+++|.|+ +++.++.+++.+.|+. +.+.
T Consensus 196 ~g~~-v~i~l~~~h~~---el-----~~~~~~ai~~L~~~Gi-~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~ 265 (321)
T TIGR03822 196 SGKT-VYVALHANHAR---EL-----TAEARAACARLIDAGI-PMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLH 265 (321)
T ss_pred cCCc-EEEEecCCChh---hc-----CHHHHHHHHHHHHcCC-EEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEE
Confidence 8854 89999996542 11 5899999999999999 99999999987665 4799999999999994 5566
Q ss_pred eeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 160 EFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.|.++............++++.+.+..+
T Consensus 266 ~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~ 295 (321)
T TIGR03822 266 HLDLAPGTAHFRVTIEEGQALVRALRGRIS 295 (321)
T ss_pred ecCCCCCcccccCcHHHHHHHHHHHHHhCC
Confidence 777886654332222223344455544443
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=130.29 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=131.6
Q ss_pred CCCCCHHHHHHHHHHHHh---C--------CCCEEEEcC-CccCcccc-HHHHHHHHhcc----CCCC--cEEEEeCccc
Q 022377 12 PQLLSLNEILRLAYLFVT---S--------GVDKIRLTG-GEPTVRKD-IEEACFHLSKL----KGLK--TLAMTTNGLT 72 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~---~--------~~~~v~~tG-GEPll~~~-~~~ii~~~~~~----~~~~--~v~i~TNG~l 72 (298)
...|+.+|+...+..+.+ . .+..|.|.| ||||++.+ +.++++.+++. .++. .++++|.|
T Consensus 146 ~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~G-- 223 (373)
T PRK14459 146 TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVG-- 223 (373)
T ss_pred CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcC--
Confidence 466999999877665543 1 156799999 99999766 66999998761 2442 47788888
Q ss_pred hHhhHHHHHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCHh--HHHHH
Q 022377 73 LARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAI-EVGYNPVKVNCVVMRGFNDD--EICDF 145 (298)
Q Consensus 73 l~~~~~~l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~~--~i~~i 145 (298)
+...+++|.+.++. .+.|||++++++.++++.+. .+++.++++++.+. +.|. ++.+++++.+|.|++ +..++
T Consensus 224 l~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~gr-rv~ieyvLi~GvNDs~e~a~~L 302 (373)
T PRK14459 224 LVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGR-RVSIEYALIRDINDQPWRADLL 302 (373)
T ss_pred chhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEeCCCCCCHHHHHHH
Confidence 33567788887765 79999999999999999984 45999999977776 5688 999999999999975 48889
Q ss_pred HHHHhhC---CCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 022377 146 VELTRDR---PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 146 ~~~~~~~---g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
+++++.+ .+.+.+++|.|.++..|.........++.+.+.+
T Consensus 303 ~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 303 GKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRA 346 (373)
T ss_pred HHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999887 5788899999988777765433334444444443
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=128.06 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=116.4
Q ss_pred CCCHHHHH-HHHHHHHh--CCCCEEEEcC-CccCcccc-HHHHHHHHhcc-----CCCCcEEEEeCccchHhhHHHHHHc
Q 022377 14 LLSLNEIL-RLAYLFVT--SGVDKIRLTG-GEPTVRKD-IEEACFHLSKL-----KGLKTLAMTTNGLTLARKLPKLKES 83 (298)
Q Consensus 14 ~l~~e~~~-~~i~~~~~--~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~-----~~~~~v~i~TNG~ll~~~~~~l~~~ 83 (298)
.++.+|+. +++..... ..+..|.|+| ||||++.+ +.++++.+++. .+. .++|+|||.. ..+.++.+.
T Consensus 124 ~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~-~ItVsTnG~~--p~i~~l~~~ 200 (336)
T PRK14470 124 SLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGR-RISISTAGVV--PMIRRYTAE 200 (336)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccCHHHHHHHHHHHhCccccccCCC-ceEEEecCCh--HHHHHHHhc
Confidence 34555544 44443332 2468999999 99999866 67888888752 244 5999999974 356666666
Q ss_pred CC-CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCeeE
Q 022377 84 GL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIR 157 (298)
Q Consensus 84 ~~-~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~~~ 157 (298)
+. +.+.||||+++++.++++.+. .+++.++++++.+.+.+. ++.+.+++.+|.|++ ++.++.+++..+.+.+.
T Consensus 201 ~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~r-ri~ieyvLI~GvNDseeda~~La~llk~l~~~vn 279 (336)
T PRK14470 201 GHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRG-RVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLN 279 (336)
T ss_pred CCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCC-CeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEE
Confidence 65 779999999999999999764 359999999999999877 899999999998864 59999999998888888
Q ss_pred EEeeecCCC
Q 022377 158 FIEFMPFDG 166 (298)
Q Consensus 158 ~~~~~p~~~ 166 (298)
.+.|.|..+
T Consensus 280 lI~~N~~~~ 288 (336)
T PRK14470 280 PIAVNDATG 288 (336)
T ss_pred EeccCCCCC
Confidence 888888544
|
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=123.13 Aligned_cols=139 Identities=24% Similarity=0.335 Sum_probs=119.0
Q ss_pred CCCCCCHHHHHHHHHHHHhC------CCCEEEEcC-CccCccccHHHHHHHHhccCC-CCcEEEEeCccchHhhHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTS------GVDKIRLTG-GEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~------~~~~v~~tG-GEPll~~~~~~ii~~~~~~~~-~~~v~i~TNG~ll~~~~~~l~~ 82 (298)
++.....+.+..-++.+... .+..|+|+| |||+|+|++-++++.+++. + +. +.+.|||++ ++..+.|.
T Consensus 53 ~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~-g~~~-tflvTNgsl-pdv~~~L~- 128 (296)
T COG0731 53 RPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNLGELIEEIKKR-GKKT-TFLVTNGSL-PDVLEELK- 128 (296)
T ss_pred CCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccccCHHHHHHHHHhc-CCce-EEEEeCCCh-HHHHHHhc-
Confidence 45567778887777777665 578999997 9999999999999999996 6 64 999999987 77777777
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhH--HHHHHHHHhhCCCe
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDE--ICDFVELTRDRPIN 155 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~--i~~i~~~~~~~g~~ 155 (298)
..+.+.+|||++++++|+++.+.. +|+++++++..+++. .- +..+++++.+|.|.++ ++++++++.....+
T Consensus 129 -~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~-~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd 205 (296)
T COG0731 129 -LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKG-RTVIRTTLVKGINDDEEELEEYAELLERINPD 205 (296)
T ss_pred -cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCC-cEEEEEEEeccccCChHHHHHHHHHHHhcCCC
Confidence 489999999999999999998763 499999999999997 55 7999999999999876 99999999986654
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=128.40 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=119.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC--CCEEEEcC-CccCccccHHHHHHHHhccC--C--CCcEEEEeCccch-HhhHHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSG--VDKIRLTG-GEPTVRKDIEEACFHLSKLK--G--LKTLAMTTNGLTL-ARKLPKLK 81 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~--~~~v~~tG-GEPll~~~~~~ii~~~~~~~--~--~~~v~i~TNG~ll-~~~~~~l~ 81 (298)
+....|+.+|+...+..+...+ +..|+|+| ||||+++++.++++.+.+.. + ..+++|+|+|..- -+.+....
T Consensus 123 g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~ 202 (347)
T PRK14453 123 GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANPELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEF 202 (347)
T ss_pred CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCHHHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhc
Confidence 3456799999988777665554 78999999 99999999889998887732 2 2258999999653 23333332
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCHh--HHHHHHHHHhhC---
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDD--EICDFVELTRDR--- 152 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~--- 152 (298)
. .++ +.+||++++++.++++.+.. .++.++++++...+ .|. ++.+++++.+|.|++ ++.+++++++.+
T Consensus 203 ~-~v~-LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~-~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~ 279 (347)
T PRK14453 203 P-QVN-LTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGR-KVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSW 279 (347)
T ss_pred c-CcC-EEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCC-cEEEEEEeECCCCCCHHHHHHHHHHHhhcccc
Confidence 2 345 88899999999998988754 37888887777665 677 999999999999987 899999999987
Q ss_pred --CCeeEEEeeecCCCC
Q 022377 153 --PINIRFIEFMPFDGN 167 (298)
Q Consensus 153 --g~~~~~~~~~p~~~~ 167 (298)
...+.+++|.|.+..
T Consensus 280 ~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 280 EHLYHVNLIPYNSTDKT 296 (347)
T ss_pred CCcceEEEecCCCCCCC
Confidence 346777888877653
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=126.99 Aligned_cols=154 Identities=23% Similarity=0.355 Sum_probs=118.6
Q ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVT-SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
...++.+|+...+..+.+ .++..|.|+| ||||++.+ +.+.++.+.+..++ ..+.++|||. ++ .+.++....
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl-~~-~i~~l~~~~ 205 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGL-VP-EMEELGREV 205 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCc-hH-HHHHHhhcc
Confidence 466999999876655443 4688999998 99999874 66888888653354 2489999994 44 444555543
Q ss_pred CCeEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCeeEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~~~~ 159 (298)
...+.||||+++++.++++.+ ..++++++++++.....+..++.+++++.+|.|+ +++.++++++.++++.+.++
T Consensus 206 ~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlI 285 (349)
T PRK14463 206 TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLI 285 (349)
T ss_pred CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEE
Confidence 335779999999999999854 3458999998888776543389999999999998 78999999999988888888
Q ss_pred eeecCCCC
Q 022377 160 EFMPFDGN 167 (298)
Q Consensus 160 ~~~p~~~~ 167 (298)
+|.|.++.
T Consensus 286 Pyn~~~~~ 293 (349)
T PRK14463 286 PFNEHEGC 293 (349)
T ss_pred ecCCCCCC
Confidence 88777654
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=125.87 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=120.1
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
...||.+|+...+..+.+. ++..|.|+| ||||++.+ +.+.++.+.+..++ ..++|+|||.. ..++++.+..
T Consensus 128 ~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~--~~i~~l~~~~ 205 (345)
T PRK14466 128 TGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLK--KGLKRFLEES 205 (345)
T ss_pred CCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCc--hHHHHHhhcc
Confidence 3459999998777666432 478999999 99998755 66777777654344 25999999943 2233433323
Q ss_pred CCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCeeEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIRFI 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~~~~~ 159 (298)
-..+.+||++++++..+++.+. .+++.++++++...+....++.+.+++.+|.|+. ++.+++++++..++.+.++
T Consensus 206 ~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLI 285 (345)
T PRK14466 206 ECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLI 285 (345)
T ss_pred CcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 3468999999999999999875 3489999999998765433899999999999975 5999999999988899999
Q ss_pred eeecCCCCCCc
Q 022377 160 EFMPFDGNVWN 170 (298)
Q Consensus 160 ~~~p~~~~~~~ 170 (298)
.|.|..+..+.
T Consensus 286 p~Np~~~~~~~ 296 (345)
T PRK14466 286 RFHAIPGVDLE 296 (345)
T ss_pred ecCCCCCCCCc
Confidence 99987665443
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=126.55 Aligned_cols=156 Identities=22% Similarity=0.348 Sum_probs=120.7
Q ss_pred CCCCCHHHHHHHHHHHHhC---CCCEEEEcC-CccCcccc-HHHHHHHHhccCCC--CcEEEEeCccchHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTS---GVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL--KTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~---~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~--~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
...++.+|+..-+..+... ++..|+|+| ||||++++ +.+.++.+.+..++ ..++++|+| +.+.+++|.+..
T Consensus 126 ~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G--~~~~i~~L~~~~ 203 (345)
T PRK14457 126 KRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVG--VPKTIPQLAELA 203 (345)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCC--chhhHHHHHhhh
Confidence 3468999987766655442 468999999 99999987 55999988663355 248999999 434577776655
Q ss_pred ------C-CeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHH-HHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhh
Q 022377 85 ------L-TSVNISLDTLVPAKFEFLTRRK---GHEKVMESINA-AIEVGYNPVKVNCVVMRGFND--DEICDFVELTRD 151 (298)
Q Consensus 85 ------~-~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~-l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~ 151 (298)
. ..+.+||++++++.++++.+.. +++.++++++. +.+.|. ++.+++++.+|.|+ +++.++++++..
T Consensus 204 ~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr-~I~iey~LIpGvNDs~e~a~~La~~l~~ 282 (345)
T PRK14457 204 FQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGR-RVSFEYILLGGVNDLPEHAEELANLLRG 282 (345)
T ss_pred hhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 2 3599999999999999997643 38888877755 556777 89999999999997 679999999999
Q ss_pred CCCeeEEEeeecCCCCCCc
Q 022377 152 RPINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~ 170 (298)
+++.+..++|.|.+...+.
T Consensus 283 l~~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 283 FQSHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred CCCeEEEecCCCCCCCCCC
Confidence 8877777777777665553
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-14 Score=124.95 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
..++.+++.+.++.+.+.|+..|.|+||+ |++. ..+.++++.+++..++. +.+ +.|....+.++.|+++|++.+.+
T Consensus 68 ~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~-i~~-~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 68 YRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVA-ITL-SLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCce-EEE-ecCCCCHHHHHHHHHcCCCEEEe
Confidence 35799999999999999999999999997 5554 45779999998844663 554 44655678999999999999999
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCC
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNV 168 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~ 168 (298)
++++.+++.++.+++..+++..+++++.++++|+ .+...+++. ||++.+++.+.++++.+++++ +.+..|+|..+++
T Consensus 146 glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi-~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTp 224 (323)
T PRK07094 146 RHETADKELYAKLHPGMSFENRIACLKDLKELGY-EVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTP 224 (323)
T ss_pred ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCC
Confidence 9999999999999987889999999999999999 887777665 689999999999999999984 6777888988877
Q ss_pred CcccCCCCHHHHHHHHHH
Q 022377 169 WNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 169 ~~~~~~~~~~e~~~~i~~ 186 (298)
.......+.++.++.++.
T Consensus 225 l~~~~~~~~~~~~~~~a~ 242 (323)
T PRK07094 225 LKDEKGGSLELTLKVLAL 242 (323)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 665555667776665543
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-14 Score=124.96 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeC---c--cch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTN---G--LTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TN---G--~ll-~~~~~~l~~ 82 (298)
++.++.+++.++++.+.+. ++..|.|||||||++++ +.++++.+.....+..+.+.|. . .++ ++.++.|.+
T Consensus 122 ~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~ 201 (321)
T TIGR03821 122 ENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLAN 201 (321)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHh
Confidence 4578899999999988864 78999999999999998 7788877766433334455442 1 244 567888888
Q ss_pred cCCCeE-EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCCC-eeEE
Q 022377 83 SGLTSV-NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRPI-NIRF 158 (298)
Q Consensus 83 ~~~~~v-~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g~-~~~~ 158 (298)
++...+ .+|+|++ +|.+ +.+.++++.|+++|+ .+.+++|+++|.| .+++.++.+.+.++|+ .+.+
T Consensus 202 ~~~~~~~~~h~dh~-~Ei~---------d~~~~ai~~L~~~Gi-~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl 270 (321)
T TIGR03821 202 SRLQTVLVVHINHA-NEID---------AEVADALAKLRNAGI-TLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYL 270 (321)
T ss_pred cCCcEEEEeeCCCh-HhCc---------HHHHHHHHHHHHcCC-EEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcc
Confidence 887766 4699997 4765 347779999999999 9999999999754 5789999999999999 5566
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 159 IEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..+.|.++... ..++.++..+.+.
T Consensus 271 ~~~~p~gg~~~---f~v~~~~~~~i~~ 294 (321)
T TIGR03821 271 HLLDKVQGAAH---FDVDDERARALMA 294 (321)
T ss_pred cccCCCCCccc---ccCCHHHHHHHHH
Confidence 67778876442 3355544444433
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-13 Score=125.84 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=128.7
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeC-----ccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTN-----GLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TN-----G~ll-~~~~~~l~~ 82 (298)
...++.+++.++++.+.+. +++.|.|||||||+.++ +..+++.+++...+..+.+-|+ ++.+ ++.++.|.+
T Consensus 135 ~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~ 214 (417)
T TIGR03820 135 DSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKK 214 (417)
T ss_pred cccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHh
Confidence 4678999999999999884 78999999999999988 5577899988767766889999 7777 567888989
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCe-eEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPIN-IRFI 159 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~-~~~~ 159 (298)
.+..+|++|++++ +|. ++.+++++++|+++|+ ++..++|+.+|.|++ -+.++.+-+.+.|+. .-..
T Consensus 215 ~~~~~v~~h~nhp-~Ei---------t~~a~~Al~~L~~aGI-~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~ 283 (417)
T TIGR03820 215 HHPVWLNTHFNHP-REI---------TASSKKALAKLADAGI-PLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLY 283 (417)
T ss_pred cCCeEEEEeCCCh-HhC---------hHHHHHHHHHHHHcCC-EEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceee
Confidence 8888999999997 443 5899999999999999 999999999998874 477788877788883 2233
Q ss_pred eeecCCCCCCcccCCCCHHHHHHHHHHhCCCc
Q 022377 160 EFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGL 191 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~ 191 (298)
..-++.+..-...+.....++++.+....+++
T Consensus 284 ~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG~ 315 (417)
T TIGR03820 284 QCDLSEGLSHFRTPVGKGIEIIESLIGHTSGF 315 (417)
T ss_pred eccCCCCcccccCcHHHHHHHHHHHHHhCCCC
Confidence 33445444322222222345566666555443
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=123.39 Aligned_cols=156 Identities=23% Similarity=0.265 Sum_probs=123.0
Q ss_pred CCCCCHHHHHHHHHHHHhC------CCCEEEEc-CCccCccccHH-HHHHHHhccCCCC----cEEEEeCccchHhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS------GVDKIRLT-GGEPTVRKDIE-EACFHLSKLKGLK----TLAMTTNGLTLARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~------~~~~v~~t-GGEPll~~~~~-~ii~~~~~~~~~~----~v~i~TNG~ll~~~~~~ 79 (298)
...|+.+|+..-+..+... ....|+|. |||||+++++. ++++.+++..|+. +++|.|+|.. +.+++
T Consensus 135 ~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~--~~i~~ 212 (356)
T PRK14462 135 VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLA--SKIKK 212 (356)
T ss_pred cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCCh--HHHHH
Confidence 3679999987665533331 24588888 89999999965 9999998843663 3699999954 46777
Q ss_pred HHHcCC-CeEEEecCCCCHHhhhhhcCCCc---HHHHHHHHHHHH-HcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhC
Q 022377 80 LKESGL-TSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAI-EVGYNPVKVNCVVMRGFND--DEICDFVELTRDR 152 (298)
Q Consensus 80 l~~~~~-~~v~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~ 152 (298)
|.+..+ ..+.|||++++++.++++.+... .+.++++++.+. +.+. ++.+++++.+|.|+ +++.+++++++.+
T Consensus 213 L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~-~i~ieyvLI~GvNDs~e~a~~La~llk~l 291 (356)
T PRK14462 213 LGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRK-RVMFEYLVIKDVNDDLKSAKKLVKLLNGI 291 (356)
T ss_pred HHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCC-eEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 777654 45888999999999999998543 689999998555 6677 99999999999987 5699999999998
Q ss_pred CCeeEEEeeecCCCCCCc
Q 022377 153 PINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 153 g~~~~~~~~~p~~~~~~~ 170 (298)
++.+..++|.|++...|.
T Consensus 292 ~~~VnLIPyn~~~~~~~~ 309 (356)
T PRK14462 292 KAKVNLILFNPHEGSKFE 309 (356)
T ss_pred CcEEEEEeCCCCCCCCCC
Confidence 888888888887766664
|
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=113.58 Aligned_cols=151 Identities=26% Similarity=0.376 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCC
Q 022377 18 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTL 95 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~ 95 (298)
+++..++......+...+.++||||++++++.++++.+++. .++. +.+.|||..+ .+.++.|.++|+..+.+|+++.
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~-~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~ 109 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELPGFE-ISIETNGTLLTEELLKELKELGLDGVGVSLDSG 109 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCCCce-EEEEcCcccCCHHHHHHHHhCCCceEEEEcccC
Confidence 46777777777778889999999999999888999999884 3674 9999999886 6789999999999999999999
Q ss_pred CHHhhhhhc-CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCC-C-eeEEEeeecCCCCCCc
Q 022377 96 VPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRP-I-NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 96 ~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g-~-~~~~~~~~p~~~~~~~ 170 (298)
+++.+..+. +..++++++++++.+.+.++ .+.+.+++..+.+. +++.+.++++.+.+ + .+.+..+.|.+++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 110 DEEVADKIRGSGESFKERLEALKELREAGL-GLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred CHHHHHHHhcCCcCHHHHHHHHHHHHHcCC-CceEEEEEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 999888887 66679999999999999999 89999888875443 67888888887766 5 4677788888777543
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=122.38 Aligned_cols=153 Identities=18% Similarity=0.314 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHHHHHHh----CCCCEEEEcC-CccCccccHH-HHHHHHhccCCC----CcEEEEeCccchHhhHHHHHH
Q 022377 13 QLLSLNEILRLAYLFVT----SGVDKIRLTG-GEPTVRKDIE-EACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~----~~~~~v~~tG-GEPll~~~~~-~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~~l~~ 82 (298)
..|+.+|+..-+..+.. .++..|+|+| ||||++.+.. ++++.+++..|+ .+++|+|+|.. ..+.++..
T Consensus 125 rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~--~~i~~l~~ 202 (348)
T PRK14467 125 RNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGII--HQIKRMAE 202 (348)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCCh--hHHHHHHh
Confidence 57999998765544433 2468999999 9999999855 999999763466 14999999955 22333332
Q ss_pred ----cCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhC
Q 022377 83 ----SGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAI-EVGYNPVKVNCVVMRGFND--DEICDFVELTRDR 152 (298)
Q Consensus 83 ----~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~ 152 (298)
..++ +.+||++++++.++++++.. .++.+++.++... +.|. ++.+++++.+|.|+ +++.++++++..+
T Consensus 203 ~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~-~V~ieyvLIpGvNDs~e~a~~La~~l~~l 280 (348)
T PRK14467 203 DPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR-RIMLEYVLIKGVNDSPEDALRLAQLIGKN 280 (348)
T ss_pred hccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC-eEEEEEEEECCccCCHHHHHHHHHHHhcC
Confidence 2354 77999999999999999864 4788888887665 4677 99999999999985 5799999999886
Q ss_pred C--CeeEEEeeecCCCCCC
Q 022377 153 P--INIRFIEFMPFDGNVW 169 (298)
Q Consensus 153 g--~~~~~~~~~p~~~~~~ 169 (298)
+ ..+.+++|.|+....+
T Consensus 281 ~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 281 KKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred CCceEEEEecCCCCCCCCC
Confidence 4 3455566666554444
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-14 Score=119.08 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSld 93 (298)
+|+.+++.+.++++...++..|.||||||||++++.++++++++. |+. +.|.|||+++.+. +. .++.+++|++
T Consensus 55 ~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~-g~~-v~leTNGtl~~~~---l~--~~d~v~vs~K 127 (238)
T TIGR03365 55 PMTAEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAK-GYR-FALETQGSVWQDW---FR--DLDDLTLSPK 127 (238)
T ss_pred cCCHHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHC-CCC-EEEECCCCCcHHH---Hh--hCCEEEEeCC
Confidence 599999999998877667889999999999999999999999985 995 9999999988652 22 3678999999
Q ss_pred CCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 022377 94 TLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR 135 (298)
Q Consensus 94 g~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~ 135 (298)
++++.. ...|+...++++.+.+ +. .+.+.+|+..
T Consensus 128 ~~~sg~------~~~~~~~~~~ik~l~~-~~-~~~vK~Vv~~ 161 (238)
T TIGR03365 128 PPSSGM------ETDWQALDDCIERLDD-GP-QTSLKVVVFD 161 (238)
T ss_pred CCCCCC------CCcHHHHHHHHHHhhh-cC-ceEEEEEECC
Confidence 976421 1348888889998887 66 8999999996
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-13 Score=120.74 Aligned_cols=158 Identities=14% Similarity=0.185 Sum_probs=127.3
Q ss_pred CCCCCHHH-HHHHHHHHHh-------CCCCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-Hhh
Q 022377 12 PQLLSLNE-ILRLAYLFVT-------SGVDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARK 76 (298)
Q Consensus 12 ~~~l~~e~-~~~~i~~~~~-------~~~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~ 76 (298)
..+.+.++ +.++++++.. .++..|.|.||+|++. .++.++++.+++.. +. .+++.||+..+ .+.
T Consensus 31 ~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~-eit~e~np~~l~~e~ 109 (378)
T PRK05660 31 KGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDA-EITMEANPGTVEADR 109 (378)
T ss_pred CCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCc-EEEEEeCcCcCCHHH
Confidence 34556666 6667777764 3577999999999995 45889999998742 34 59999997777 678
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI- 154 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~- 154 (298)
++.|+++|+++|+|++++.+++..+.+++..+++.++++++.++++|+..+.+... -.|+++.+++.+.++++.++++
T Consensus 110 l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 110 FVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999889999999999999999943455443 3378899999999999999998
Q ss_pred eeEEEeeecCCCCCCc
Q 022377 155 NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~~ 170 (298)
.+.+..+.+..++.+.
T Consensus 190 ~is~y~l~~~~gT~l~ 205 (378)
T PRK05660 190 HLSWYQLTIEPNTLFG 205 (378)
T ss_pred eEEeeccEeccCCccc
Confidence 5677777776555443
|
|
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-13 Score=118.77 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=116.8
Q ss_pred CCCCCHHHHHHHHHHHHh-C--CCCE-EEEcCCccCccccH-HHHHHHHhccCCCC----cEEEEeCccchHhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVT-S--GVDK-IRLTGGEPTVRKDI-EEACFHLSKLKGLK----TLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-~--~~~~-v~~tGGEPll~~~~-~~ii~~~~~~~~~~----~v~i~TNG~ll~~~~~~l~~ 82 (298)
...||.+|+...+..... + .+.. |.++|||||+++++ .++++.+++..|+. +++|.|+|.. + .+.++.+
T Consensus 126 ~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~-p-~i~~l~~ 203 (342)
T PRK14454 126 VRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIV-P-KIYELAD 203 (342)
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCCh-h-HHHHHHh
Confidence 456999999877765544 2 2445 55789999999985 59999998733661 3899999953 3 3566766
Q ss_pred cC-CCeEEEecCCCCHHhhhhhcCCCc---HHHHHHHHHH-HHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCe
Q 022377 83 SG-LTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINA-AIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPIN 155 (298)
Q Consensus 83 ~~-~~~v~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~-l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~ 155 (298)
.+ ...+.+||++++++.++++.+... ++.+++.++. +.+.+. ++.+++++.+|.|+ +++++++++++.+.+.
T Consensus 204 ~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~-rv~iey~LI~gvNDs~eda~~La~llk~l~~~ 282 (342)
T PRK14454 204 ENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNR-RITFEYALVKGVNDSKEDAKELGKLLKGMLCH 282 (342)
T ss_pred hcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCC-EEEEEEEeECCCCCCHHHHHHHHHHHhcCCce
Confidence 43 234899999999999999998543 6777776655 456677 89999999999986 5699999999987677
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+++|.|.+...+
T Consensus 283 VnLiPyn~~~~~~~ 296 (342)
T PRK14454 283 VNLIPVNEVKENGF 296 (342)
T ss_pred EEEEecCCCCCCCC
Confidence 77777777665544
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=115.93 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCEEEEcC-CccCcccc-HHHHHHHHhccC----CCCcEEEEeCccchHhhHHHHHH-
Q 022377 13 QLLSLNEILRLAYLFVT---SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLK----GLKTLAMTTNGLTLARKLPKLKE- 82 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~---~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~----~~~~v~i~TNG~ll~~~~~~l~~- 82 (298)
..++..|+..-+-.+.+ ..+..|.|.| ||||++.+ +.+.++++++.. +-.+++|+|||.. ..+.+|.+
T Consensus 131 rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~--~~i~~l~~~ 208 (342)
T PRK14465 131 GNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVV--NGIRRFIEN 208 (342)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCch--HHHHHHHhh
Confidence 45677776654444443 2478999999 99999965 779999887731 1226999999955 44555554
Q ss_pred cCCCeEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCee
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAI-EVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPINI 156 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~ 156 (298)
..-..+.||||+++.+.++.+.. ..+++.++++++.+. +.+. ++.+..++.+|.|+ ++++++.+++..+++.+
T Consensus 209 ~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r-~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kV 287 (342)
T PRK14465 209 KEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKR-RITFEYVMIPGVNMGRENANKLVKIARSLDCKI 287 (342)
T ss_pred ccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCC-EEEEEEEEECCccCCHHHHHHHHHHHhhCCCcE
Confidence 32346999999999999999864 346899999999776 5576 89999999999987 57999999999998888
Q ss_pred EEEeeecC
Q 022377 157 RFIEFMPF 164 (298)
Q Consensus 157 ~~~~~~p~ 164 (298)
..++|.|.
T Consensus 288 nLIPyN~~ 295 (342)
T PRK14465 288 NVIPLNTE 295 (342)
T ss_pred EEEccCCC
Confidence 88888774
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-12 Score=115.92 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc-CC-ccCcc--ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT-GG-EPTVR--KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t-GG-EPll~--~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
...|+.|++.+.+..+.+.|+..+++. || +|... ..+.++++.+++ .++. + +.|||.+..+.+++|+++|++.
T Consensus 73 ~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~-~~i~-v-~~s~G~ls~e~l~~LkeAGld~ 149 (345)
T PRK15108 73 ERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA-MGLE-T-CMTLGTLSESQAQRLANAGLDY 149 (345)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh-CCCE-E-EEeCCcCCHHHHHHHHHcCCCE
Confidence 445999999999999999999999885 44 67544 346699999987 4774 6 4789987788999999999999
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC--Ce-eEEEeeecC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP--IN-IRFIEFMPF 164 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g--~~-~~~~~~~p~ 164 (298)
++++||+ .++.|..++...+|+..++.++.+++.|+ ++...+++.-|++.+++.+.+..+++++ .+ +.+..+.|.
T Consensus 150 ~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~-~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~ 227 (345)
T PRK15108 150 YNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKV 227 (345)
T ss_pred Eeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCC-ceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCC
Confidence 9999999 79999999887899999999999999999 8888887777889999999999998884 32 333455676
Q ss_pred CCCCCcccCCCCHHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i~ 185 (298)
.+++......++..+.++.+.
T Consensus 228 ~gTpl~~~~~~~~~e~lr~iA 248 (345)
T PRK15108 228 KGTPLADNDDVDAFDFIRTIA 248 (345)
T ss_pred CCCCCCCCCCCCHHHHHHHHH
Confidence 666665545567777776654
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=117.66 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEcCCccCcccc--HHHHHHHHhccCCCC--cEEEEeCcc---ch-HhhHHHHHHcCCCe
Q 022377 17 LNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLK--TLAMTTNGL---TL-ARKLPKLKESGLTS 87 (298)
Q Consensus 17 ~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~--~v~i~TNG~---ll-~~~~~~l~~~~~~~ 87 (298)
.+++.++++.+.. .++..|.|||||||+.++ +.++++.+++...+. +++..|+++ .+ ++.++.|.+.++..
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~ 223 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQL 223 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcE
Confidence 7899999999876 468999999999999987 779999988753332 244445554 35 56788888889998
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCC-eeEEEeeecC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPI-NIRFIEFMPF 164 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~-~~~~~~~~p~ 164 (298)
+.+|.++..++.+ +.+.++++.|+++|+ .+.+++|+++|.|++ .+.++.+.+.+.|+ .+....+.|+
T Consensus 224 ~~vsh~nh~~Ei~---------~~~~~ai~~L~~aGi-~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~ 293 (331)
T TIGR00238 224 MLVTHINHCNEIT---------EEFAEAMKKLRTVNV-TLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKV 293 (331)
T ss_pred EEEccCCChHhCC---------HHHHHHHHHHHHcCC-EEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCC
Confidence 9999777545543 678899999999999 999999999986653 48889999998898 4556667777
Q ss_pred CCCCCcccCCCCHHHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
++... ..++.++..+.+.+
T Consensus 294 ~g~~~---f~~~~~~~~~i~~~ 312 (331)
T TIGR00238 294 QGAKH---FLVPDAEAAQIVKE 312 (331)
T ss_pred CCccc---ccCCHHHHHHHHHH
Confidence 76522 33555555544444
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-12 Score=111.41 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=132.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEE-c-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRL-T-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~-t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
...++++++.+.++++.+.|+..+.+ + |++|.... .+.++.+.+++ .++. +. .++|.+.++.++.|+++|++
T Consensus 59 ~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~-~~i~-~~-~~~g~~~~e~l~~Lk~aG~~ 135 (296)
T TIGR00433 59 ERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEE-MGLK-TC-ATLGLLDPEQAKRLKDAGLD 135 (296)
T ss_pred ccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHh-CCCe-EE-ecCCCCCHHHHHHHHHcCCC
Confidence 35688999988888888889888765 3 66666433 23355555555 4774 64 46675557899999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCC
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFD 165 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~ 165 (298)
.+.++++ .+++.|+.+++..+++..+++++.++++|+ ++...+++..+.+.+++.+.++++.+++++ +.+..+.|..
T Consensus 136 ~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi-~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~ 213 (296)
T TIGR00433 136 YYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGL-KVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIK 213 (296)
T ss_pred EEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCC-EEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcC
Confidence 9999999 589999999987889999999999999999 888887775568889999999999999885 6677888988
Q ss_pred CCCCcccCCCCHHHHHHHHHH
Q 022377 166 GNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 166 ~~~~~~~~~~~~~e~~~~i~~ 186 (298)
++........+.++..+.+..
T Consensus 214 gT~l~~~~~~s~~~~~~~ia~ 234 (296)
T TIGR00433 214 GTPLADNKELSADDALKTIAL 234 (296)
T ss_pred CCccCCCCCCCHHHHHHHHHH
Confidence 776655555677777666554
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-12 Score=113.70 Aligned_cols=169 Identities=16% Similarity=0.216 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEE-cC-CccCcc--ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRL-TG-GEPTVR--KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~-tG-GEPll~--~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v 88 (298)
..+++|++.+.++.+.+.|...+.+ +| ++|... .++.++++.+++..++. + ..++|.+..+.++.|+++|++.+
T Consensus 89 ~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~-~-~~~~g~l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 89 AWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLE-I-CACLGLLTEEQAERLKEAGVDRY 166 (336)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCc-E-EecCCcCCHHHHHHHHHhCCCEE
Confidence 4689999999999999999877776 34 446544 25778888888744443 4 34567655789999999999999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 167 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~ 167 (298)
.+++++ +++.++++++..+++..+++++.++++|+ .+...+++..|++.+++.+.++++.+++++ +.+..+.|..++
T Consensus 167 ~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi-~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT 244 (336)
T PRK06256 167 NHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI-EPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGT 244 (336)
T ss_pred ecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC-eeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCC
Confidence 999999 89999999988889999999999999999 888887775578999999999999999885 556677888777
Q ss_pred CCcccCCCCHHHHHHHHH
Q 022377 168 VWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 168 ~~~~~~~~~~~e~~~~i~ 185 (298)
+......++..+.++.+.
T Consensus 245 ~l~~~~~~~~~e~l~~ia 262 (336)
T PRK06256 245 PLENHPELTPLECLKTIA 262 (336)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 766556677777776654
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=117.13 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=130.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc---HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD---IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~---~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
+...|+.|++.+.++.+.+.|+..|.|+||||....+ +.++++.+++. +..+++.++. +..+.++.|+++|++.
T Consensus 100 ~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~--~p~i~i~~g~-lt~e~l~~Lk~aGv~r 176 (371)
T PRK09240 100 KRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREY--FSSVSIEVQP-LSEEEYAELVELGLDG 176 (371)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHh--CCCceeccCC-CCHHHHHHHHHcCCCE
Confidence 3478999999999999999999999999999887655 44666666652 2235665554 4567899999999999
Q ss_pred EEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCCC-------e
Q 022377 88 VNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRPI-------N 155 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g~-------~ 155 (298)
+++++++.+++.|..++. ..+|+.++++++.++++|+ . .+++.++.|.+ .++..+++..+..+++ .
T Consensus 177 ~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~-~-~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~s 254 (371)
T PRK09240 177 VTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI-R-KIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYS 254 (371)
T ss_pred EEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC-C-eeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999999973 3469999999999999999 5 44554444444 4556666665555443 5
Q ss_pred eEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 022377 156 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
++++.++|..+ +|.....++..++++.+.-
T Consensus 255 v~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 255 ISFPRLRPCTG-GIEPASIVSDKQLVQLICA 284 (371)
T ss_pred eecCccccCCC-CCCCCCCCCHHHHHHHHHH
Confidence 77888999976 7877778898888877764
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-12 Score=115.30 Aligned_cols=168 Identities=21% Similarity=0.278 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEE------cCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRL------TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~------tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
..|+.|++.+.++++.+.|+..+++ ++|||.....+.++++.+++ .++. + ..|+|.+..+.+++|+++|++
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-~~l~-i-~~s~G~l~~E~l~~LkeAGld 190 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-MGME-V-CCTLGMLEKEQAAQLKEAGLT 190 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-CCcE-E-EECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999999998877 35777776778899999987 4774 5 468997778899999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC--C-eeEEEeeec
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP--I-NIRFIEFMP 163 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g--~-~~~~~~~~p 163 (298)
.+.+++|+ .++.|+.++...+|+..+++++.+++.|+ ++...+++.-|++.+++.+.+.++.++. . .+.+..+.|
T Consensus 191 ~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi-~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P 268 (379)
T PLN02389 191 AYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGI-SVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVA 268 (379)
T ss_pred EEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCC-eEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEeccccee
Confidence 99999999 57899999887899999999999999999 8888887777788888889999998874 3 355667788
Q ss_pred CCCCCCcccCCCCHHHHHHHHH
Q 022377 164 FDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 164 ~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..++++.....++..+.++.+.
T Consensus 269 ~~GTpL~~~~~~s~~e~lr~iA 290 (379)
T PLN02389 269 VKGTPLEDQKPVEIWEMVRMIA 290 (379)
T ss_pred cCCCcCCCCCCCCHHHHHHHHH
Confidence 8887776556677877776654
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=116.27 Aligned_cols=138 Identities=14% Similarity=0.272 Sum_probs=115.0
Q ss_pred CCEEEEcCCccCcc--ccHHHHHHHHhcc----CCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 32 VDKIRLTGGEPTVR--KDIEEACFHLSKL----KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 32 ~~~v~~tGGEPll~--~~~~~ii~~~~~~----~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
+..|.|.||+|++. +++.++++.+++. .+. .+++.||+..+ .+.++.|+++|+..|+|++++.++++.+.+.
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~-eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg 130 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDC-EITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG 130 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC
Confidence 67999999999874 4577888777643 245 49999999888 5689999999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCCCc
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~~~ 170 (298)
+..++++++++++.++++|+..+.+..++ .|++|.+++.+.++++.++++ .+.+..+.|..++.+.
T Consensus 131 R~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~ 198 (360)
T TIGR00539 131 RQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFE 198 (360)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhh
Confidence 66789999999999999999336665544 478999999999999999998 5777788887766543
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-12 Score=112.43 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHHHh----------CCCCEEEEcC-CccCccccHH-HHHHHHhccCC--C--CcEEEEeCccchHh
Q 022377 12 PQLLSLNEILRLAYLFVT----------SGVDKIRLTG-GEPTVRKDIE-EACFHLSKLKG--L--KTLAMTTNGLTLAR 75 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~----------~~~~~v~~tG-GEPll~~~~~-~ii~~~~~~~~--~--~~v~i~TNG~ll~~ 75 (298)
...|+.+|+..-+..+.. .++..|.|.| ||||++.+.. +.++.+.+..| + .+++|.|+|.. .
T Consensus 128 ~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~--~ 205 (372)
T PRK11194 128 NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVV--P 205 (372)
T ss_pred CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCc--h
Confidence 456999998765543332 1256777765 9999999854 88888875333 2 14999999943 3
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHH-cC---CCCEEEEEEEecCCCH--hHHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VG---YNPVKVNCVVMRGFND--DEICDFV 146 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g---~~~v~i~~vi~~~~n~--~~i~~i~ 146 (298)
.++++.+..--.+.+||++++++.++++.+.. ..+.++++++...+ .+ . ++.+++++.+|.|+ +++.+++
T Consensus 206 ~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r-rI~irypLIpGvNDs~e~a~~La 284 (372)
T PRK11194 206 ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG-RVTVEYVMLDHVNDGTEHAHQLA 284 (372)
T ss_pred HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC-eEEEEEEeECCCCCCHHHHHHHH
Confidence 46666664333688899999999999999854 35777777666654 33 4 89999999999997 5699999
Q ss_pred HHHhhCCCeeEEEeeecCCCCCC
Q 022377 147 ELTRDRPINIRFIEFMPFDGNVW 169 (298)
Q Consensus 147 ~~~~~~g~~~~~~~~~p~~~~~~ 169 (298)
++++.+++.+..++|.|+++..+
T Consensus 285 ~ll~~l~~~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 285 ELLKDTPCKINLIPWNPFPGAPY 307 (372)
T ss_pred HHHhcCCceEEEecCCCCCCCCC
Confidence 99998877777777777765555
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.9e-12 Score=112.49 Aligned_cols=157 Identities=15% Similarity=0.252 Sum_probs=125.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-------CCCEEEEcCCccCc-ccc-HHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-------GVDKIRLTGGEPTV-RKD-IEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-------~~~~v~~tGGEPll-~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~ 79 (298)
...+..+-+.++++++... ++..|.|.||+|++ .++ +.++++.+++. .+. .+++.+|+..+ .+.++.
T Consensus 25 ~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~-eitiE~nP~~~~~e~l~~ 103 (350)
T PRK08446 25 KHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDC-EITTEANPNSATKAWLKG 103 (350)
T ss_pred CcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCc-eEEEEeCCCCCCHHHHHH
Confidence 3455566777788777642 56789999999975 444 55777777652 345 49999999877 678999
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeE
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIR 157 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~ 157 (298)
++++|+++|+|++++.+++..+.+.+..+++.++++++.++++|+..+.+..++. ||++.+++.+.++++.++++ .+.
T Consensus 104 l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is 183 (350)
T PRK08446 104 MKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLS 183 (350)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999998887777899999999999999994466666554 78999999999999999998 466
Q ss_pred EEeeecCCCCCC
Q 022377 158 FIEFMPFDGNVW 169 (298)
Q Consensus 158 ~~~~~p~~~~~~ 169 (298)
+..+.+..++.+
T Consensus 184 ~y~L~~~~gT~l 195 (350)
T PRK08446 184 AYSLTIEENTPF 195 (350)
T ss_pred eccceecCCChh
Confidence 767777665544
|
|
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=96.61 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=105.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-HhCCCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccch--Hh-hHHHH
Q 022377 6 VDLTPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTL--AR-KLPKL 80 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~-~~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll--~~-~~~~l 80 (298)
...+.....|++++...-+.++ ++.|...|.++||||+|-++ +.++|+.+.+. .+.+.|||+++ +. .++.|
T Consensus 65 ~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~----tFvlETNG~~~g~drslv~el 140 (228)
T COG5014 65 LRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNN----TFVLETNGLMFGFDRSLVDEL 140 (228)
T ss_pred CCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCc----eEEEEeCCeEEecCHHHHHHH
Confidence 4455667789998876655444 55788999999999999886 66898887553 47899999988 55 56666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCc--HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g 153 (298)
...-...|.||++|.+++.+.+|++... |..-+++++.|.+.|+ .+....+..- ...+-..++..-+.+.+
T Consensus 141 ~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~-rf~pA~~~~f-~~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 141 VNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGH-RFWPAVVYDF-FREDGLKELAKRLGEHP 213 (228)
T ss_pred hcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCc-eeeehhhhcc-chhhhHHHHHHHhccCC
Confidence 6644456999999999999999998654 9999999999999998 6555444332 23344445666555544
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=115.03 Aligned_cols=149 Identities=13% Similarity=0.208 Sum_probs=121.4
Q ss_pred CCCCHHHHHHHHHHHHh--------CCCCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-HhhH
Q 022377 13 QLLSLNEILRLAYLFVT--------SGVDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKL 77 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~--------~~~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~ 77 (298)
.....+.+.++++++.. .++..|.|.||+|++. +++.++++.+++.. +. .+++.||+..+ ++.+
T Consensus 76 ~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~-e~tie~np~~lt~e~l 154 (453)
T PRK09249 76 HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDA-EISIEIDPRELDLEML 154 (453)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEecCCcCCHHHH
Confidence 34455566777777662 3467999999999984 45889999988743 34 48999999877 5789
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-e
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
+.|+++|+..|+|++++.+++..+.+++..+++.++++++.++++|+..+.+...+ .|++|.+++.+.++++.++++ .
T Consensus 155 ~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 155 DALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDR 234 (453)
T ss_pred HHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999998889999999999999998556666544 478999999999999999988 4
Q ss_pred eEEEeee
Q 022377 156 IRFIEFM 162 (298)
Q Consensus 156 ~~~~~~~ 162 (298)
+.+..+.
T Consensus 235 i~~y~l~ 241 (453)
T PRK09249 235 LAVFNYA 241 (453)
T ss_pred EEEccCc
Confidence 5555554
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-11 Score=113.12 Aligned_cols=147 Identities=12% Similarity=0.203 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHhC--------CCCEEEEcCCccCc--cccHHHHHHHHhcc----CCCCcEEEEeCccch-HhhHH
Q 022377 14 LLSLNEILRLAYLFVTS--------GVDKIRLTGGEPTV--RKDIEEACFHLSKL----KGLKTLAMTTNGLTL-ARKLP 78 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~--------~~~~v~~tGGEPll--~~~~~~ii~~~~~~----~~~~~v~i~TNG~ll-~~~~~ 78 (298)
+...+.+.++++++... ++..|.|.||+|++ ..++.++++.+++. .+. .+++.||+..+ ++.++
T Consensus 77 ~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~-eitie~np~~l~~e~l~ 155 (455)
T TIGR00538 77 HKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADA-EISIEIDPRYITKDVID 155 (455)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCC-eEEEEeccCcCCHHHHH
Confidence 44444567777776642 56789999999995 34577999999874 234 48999999887 57899
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-ee
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-NI 156 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~~ 156 (298)
.|+++|+..|+|++++.+++..+.+++..+++.++++++.++++|+..+.+..+ -.||+|.+++.+.++++.++++ .+
T Consensus 156 ~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~i 235 (455)
T TIGR00538 156 ALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRL 235 (455)
T ss_pred HHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999998888999999999999999933666543 3478999999999999999988 45
Q ss_pred EEEee
Q 022377 157 RFIEF 161 (298)
Q Consensus 157 ~~~~~ 161 (298)
.+..+
T Consensus 236 s~y~L 240 (455)
T TIGR00538 236 AVFNY 240 (455)
T ss_pred EEecC
Confidence 55555
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-11 Score=112.12 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHh--------CCCCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-HhhHH
Q 022377 14 LLSLNEILRLAYLFVT--------SGVDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLP 78 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~--------~~~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~ 78 (298)
....+.+.++++++.. .++..|.|.||+|++. +++.++++.+++.. +. .+++.||+..+ ++.++
T Consensus 78 ~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~tie~~p~~lt~e~l~ 156 (453)
T PRK13347 78 APVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEA-EIAVEIDPRTVTAEMLQ 156 (453)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCc-eEEEEeccccCCHHHHH
Confidence 4444556677777662 2467899999999973 45889999998742 34 48999999877 67899
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-ee
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NI 156 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~ 156 (298)
.|+++|+..|+|++++.+++..+.+++..+++.++++++.++++|+..+.+..++ .|+++.+++.+.++++.++++ .+
T Consensus 157 ~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i 236 (453)
T PRK13347 157 ALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRI 236 (453)
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999998899999999999999999446666543 488999999999999999988 45
Q ss_pred EEEeee
Q 022377 157 RFIEFM 162 (298)
Q Consensus 157 ~~~~~~ 162 (298)
.+..+.
T Consensus 237 ~~y~l~ 242 (453)
T PRK13347 237 AVFGYA 242 (453)
T ss_pred EEeccc
Confidence 555443
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=108.61 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=124.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc--c-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK--D-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~--~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
+...|+.|++.+.++.+.+.|+..|.++|||+.... + +.++++.+++... .+.+..+ .+..+.++.|+++|++.
T Consensus 99 ~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p--~i~Iei~-~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 99 KRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFS--SLAIEVQ-PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred ccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC--ccccccc-cCCHHHHHHHHHcCCCE
Confidence 346799999999999999999999999998855433 3 5688888876321 1333333 24467899999999999
Q ss_pred EEEecCCCCHHhhhhhc---CCCcHHHHHHHHHHHHHcCCCC-EEEEEEEecCCCHhHHHHHHHHHhhC-------CCee
Q 022377 88 VNISLDTLVPAKFEFLT---RRKGHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELTRDR-------PINI 156 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir---~~~~~~~v~~~i~~l~~~g~~~-v~i~~vi~~~~n~~~i~~i~~~~~~~-------g~~~ 156 (298)
+++++++.+++.|..+. ...+|+..+++++.++++|+ . +.+...+.-+....+..+++..+..+ ++.+
T Consensus 176 ~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~-~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv 254 (366)
T TIGR02351 176 VTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM-RKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISI 254 (366)
T ss_pred EEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC-CeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999987 23469999999999999999 5 66544443322333333333333332 2457
Q ss_pred EEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 022377 157 RFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 157 ~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
.++.++|..+ .|.....++..++++.+..
T Consensus 255 ~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~ 283 (366)
T TIGR02351 255 SVPRLRPCTN-GLKPKVIVTDRELVQIICA 283 (366)
T ss_pred cccccccCCC-CCCCCCcCCHHHHHHHHHH
Confidence 7888999866 7777777888888777654
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=106.86 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHhC----CCCEEEEcCCccCc-cccHH-HHHHHHhcc---CCCCcEEEEeCccch-HhhHHHHHHc
Q 022377 14 LLSLNEILRLAYLFVTS----GVDKIRLTGGEPTV-RKDIE-EACFHLSKL---KGLKTLAMTTNGLTL-ARKLPKLKES 83 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~----~~~~v~~tGGEPll-~~~~~-~ii~~~~~~---~~~~~v~i~TNG~ll-~~~~~~l~~~ 83 (298)
.+..+.+.++++++... ++..|.|.||+|++ .++.. .+++.+++. .++ .+++.||+..+ ++.++.|+++
T Consensus 30 ~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~-eitie~~p~~~t~e~l~~l~~~ 108 (374)
T PRK05799 30 DLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDL-EFTVEGNPGTFTEEKLKILKSM 108 (374)
T ss_pred chHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCcCCHHHHHHHHHc
Confidence 44455678888887642 35689999999996 55544 666666542 235 48999998777 6789999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEee
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEF 161 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~ 161 (298)
|+..|+|++++.+++..+.+.+..+++.++++++.++++|+..+.+...+. ||++.+++.+.++++.++++ .+....+
T Consensus 109 G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l 188 (374)
T PRK05799 109 GVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSL 188 (374)
T ss_pred CCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 999999999999999998887777899999999999999984476665444 78999999999999999987 4666677
Q ss_pred ecCCCCC
Q 022377 162 MPFDGNV 168 (298)
Q Consensus 162 ~p~~~~~ 168 (298)
.|..++.
T Consensus 189 ~~~pgT~ 195 (374)
T PRK05799 189 IIEEGTP 195 (374)
T ss_pred EecCCCH
Confidence 7765554
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=108.45 Aligned_cols=137 Identities=18% Similarity=0.298 Sum_probs=112.4
Q ss_pred CCCEEEEcCCccCc--cccHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 31 GVDKIRLTGGEPTV--RKDIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 31 ~~~~v~~tGGEPll--~~~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
++..|.|.||+|++ ..++.++++.+++..++. .+++.+|...+ .+.++.|+++|+..|+|++++.+++..+.++
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~ 130 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG 130 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 35678899999996 345779999988753331 48899998777 6789999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+..+++.+.++++.++++|+..+.+.+++ .||++.+++.+.++++.++++ .+.+..+.|..++
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT 195 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKT 195 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCC
Confidence 88889999999999999998336666544 478999999999999999988 4556666665443
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=105.95 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHhC-------CCCEEEEcCCccCccc-c-HHHHHHHHhccCCC----CcEEEEeCccch-HhhHHHH
Q 022377 15 LSLNEILRLAYLFVTS-------GVDKIRLTGGEPTVRK-D-IEEACFHLSKLKGL----KTLAMTTNGLTL-ARKLPKL 80 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~-------~~~~v~~tGGEPll~~-~-~~~ii~~~~~~~~~----~~v~i~TNG~ll-~~~~~~l 80 (298)
...+-+.++++++... .+..|.|.||+|++.+ + +.++++.+++..++ ..+++.||+..+ ++.++.|
T Consensus 68 ~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l 147 (430)
T PRK08208 68 FIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALL 147 (430)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHH
Confidence 3344456666666532 2568889999999864 3 56777777653222 148899999877 6789999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRF 158 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~ 158 (298)
+++|+..|+|++++.+++..+.+.+..+++.++++++.++++|+..+.+.+++. |+++.+++.+.++++.++++ .+.+
T Consensus 148 ~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~ 227 (430)
T PRK08208 148 AARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFL 227 (430)
T ss_pred HHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999988888887777899999999999999993355665444 88899999999999999988 5666
Q ss_pred EeeecCCCCCCc
Q 022377 159 IEFMPFDGNVWN 170 (298)
Q Consensus 159 ~~~~p~~~~~~~ 170 (298)
..+.+..++...
T Consensus 228 y~L~~~~~T~l~ 239 (430)
T PRK08208 228 YPLYVRPLTGLG 239 (430)
T ss_pred ccccccCCCccc
Confidence 666665555443
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=103.68 Aligned_cols=171 Identities=22% Similarity=0.311 Sum_probs=127.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCC-ccCccccH-HHHHHHHhccC-CCCcE----------EEEeCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKDI-EEACFHLSKLK-GLKTL----------AMTTNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGG-EPll~~~~-~~ii~~~~~~~-~~~~v----------~i~TNG~ll~~~~~~ 79 (298)
..++.|++.+.++.+.+.|+..+.|+|| +|.+..+. .++++.+++.. ++. + ...|||.+.++.++.
T Consensus 70 ~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~-~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 70 YVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIH-IHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcC-CCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 3699999999999999999999999987 67777774 48999998742 232 2 133788777889999
Q ss_pred HHHcCCCeEE-EecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVN-ISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~-iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+. ...+..++++.+.+.+. .+++..++.++.++++|+ ++...+++..|++.+++.+.+.++++++.. .
T Consensus 149 Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi-~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~ 227 (340)
T TIGR03699 149 LKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGL-PTTATMMFGHVETLEDRIEHLERIRELQDKTG 227 (340)
T ss_pred HHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 9999999765 23444566777666543 469999999999999999 888888888789999999999999998763 2
Q ss_pred EEEeeecC----CCCCCcccCCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~~~~~~~~~~~e~~~~i~ 185 (298)
.+..|+|. .+++.......+.++.++.++
T Consensus 228 ~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA 260 (340)
T TIGR03699 228 GFTAFIPWTFQPGNTELGKKRPATSTEYLKVLA 260 (340)
T ss_pred CeeEEEeecccCCCCcccCCCCCCHHHHHHHHH
Confidence 34344442 234433334466777766654
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=103.62 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=129.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCC-ccCccccH-HHHHHHHhcc-CCCCcEEE----------EeCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKDI-EEACFHLSKL-KGLKTLAM----------TTNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGG-EPll~~~~-~~ii~~~~~~-~~~~~v~i----------~TNG~ll~~~~~~ 79 (298)
..+|.|++.+.++++.+.|+..|.|+|| +|.+..+. .++++.+++. .++. +.. +|+|.+..+.+++
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~-~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMH-IHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCce-EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 4599999999999999999999999988 57777764 6999999885 2453 544 2578777889999
Q ss_pred HHHcCCCeEE-EecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+. .+.+..+++.+..++..+ +++..+++++.++++|+ ++...+++..+++.+++.+.+.++++++.+ .
T Consensus 147 LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi-~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~ 225 (343)
T TIGR03551 147 LKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGI-PTTATIMYGHVETPEHWVDHLLILREIQEETG 225 (343)
T ss_pred HHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-cccceEEEecCCCHHHHHHHHHHHHHhhHHhC
Confidence 9999999887 355666677777887655 79999999999999999 887777666568889999999999998763 2
Q ss_pred EEEeeecCC----CCCCc----ccCCCCHHHHHHHHH
Q 022377 157 RFIEFMPFD----GNVWN----VKKLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~~----~~~~~----~~~~~~~~e~~~~i~ 185 (298)
.+..+.|.. +++.. ....++..+.++.++
T Consensus 226 ~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iA 262 (343)
T TIGR03551 226 GFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHA 262 (343)
T ss_pred CeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHH
Confidence 333444422 33332 123467777776654
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-10 Score=98.58 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc-CCccCcccc---HHHHHHHHhccCCCCcEEE-EeCccchHhhHHHHHHcCCCeE
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKD---IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~~---~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~~l~~~~~~~v 88 (298)
.+++|++.+.++++.+.|+..+++. +|+-+-.+. +.++++.+++. ... +.+ .++|.+..+.+++|+++|++.+
T Consensus 39 ~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~-~p~-l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKE-VPG-LHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhh-CCC-cEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4899999999999988999999985 555222232 45788888874 332 443 5889887899999999999999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 167 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~ 167 (298)
.+.+++ .++.|..+....+|+.+++.++.+++.|+ ++...+++.-|++.+++.+.+.++++++.+ +-...+.|..+.
T Consensus 117 ~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t 194 (279)
T PRK08508 117 NHNLET-SKEFFPKICTTHTWEERFQTCENAKEAGL-GLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPAL 194 (279)
T ss_pred cccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCC-eecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCC
Confidence 999999 47888888877889999999999999999 887777777788889999999999999886 444445566555
Q ss_pred CCcccCCCCHHHHHHHHH
Q 022377 168 VWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 168 ~~~~~~~~~~~e~~~~i~ 185 (298)
+... ...+..+.++.++
T Consensus 195 ~~~~-~~~~~~~~lr~iA 211 (279)
T PRK08508 195 PLKA-PTLSADEALEIVR 211 (279)
T ss_pred CCCC-CCCCHHHHHHHHH
Confidence 5432 3467777766654
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-10 Score=100.59 Aligned_cols=138 Identities=13% Similarity=0.226 Sum_probs=114.1
Q ss_pred CCCEEEEcCCccCcc-cc-HHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 31 GVDKIRLTGGEPTVR-KD-IEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 31 ~~~~v~~tGGEPll~-~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
.+..|.|.||-|++- ++ +.++++.+++. ... .+++.+|...+ ++.++.++++|+..|+|++++.+++..+.+++
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~-eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R 134 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNC-EFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNR 134 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHHHHHHHHhcCCCC-eEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 357899999999885 44 56888888763 233 59999999888 67899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCCC
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVW 169 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~~ 169 (298)
..+.+.++++++.++++|+..+.+..++. ||++.+++.+.++++.+++. .+.+..+.+..++..
T Consensus 135 ~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l 200 (353)
T PRK05904 135 THTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSIL 200 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChH
Confidence 88899999999999999983477765444 88999999999999999887 566677777655543
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.2e-10 Score=99.85 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=132.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
..++.|++.+-++.+.+.|++.+.++||+++...++.++++.+++..+.. +.+. -|.+..+.+..+. +..|..++
T Consensus 61 ~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~~~~el~~i~e~I~~~~~~~-~~~s-~G~~d~~~~~~~~---l~Gv~g~~ 135 (350)
T PRK06267 61 ARRRVESILAEAILMKRIGWKLEFISGGYGYTTEEINDIAEMIAYIQGCK-QYLN-VGIIDFLNINLNE---IEGVVGAV 135 (350)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHhhCCc-eEee-cccCCHHHHhhcc---ccCceeee
Confidence 46899999999999999998888899999977777889999987754442 4443 3323223333333 33345789
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCCCcc
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 171 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~~~~ 171 (298)
++.+++.+..++...+++..++.++.++++|+ .+...+++..|.+.+++.++++++.+++++ +.+..+.|..+++...
T Consensus 136 ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi-~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~ 214 (350)
T PRK06267 136 ETVNPKLHREICPGKPLDKIKEMLLKAKDLGL-KTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFEN 214 (350)
T ss_pred ecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCC-eeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCC
Confidence 99989999999988899999999999999999 888888885578999999999999999985 6778889988877666
Q ss_pred cCCCCHHHHHHHHHH
Q 022377 172 KKLVPYAEMLDTVVK 186 (298)
Q Consensus 172 ~~~~~~~e~~~~i~~ 186 (298)
.+..+.++.++.++-
T Consensus 215 ~~~~s~~e~lr~ia~ 229 (350)
T PRK06267 215 KPSVTTLEYMNWVSS 229 (350)
T ss_pred CCCCCHHHHHHHHHH
Confidence 566788888777654
|
|
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-10 Score=99.60 Aligned_cols=158 Identities=22% Similarity=0.284 Sum_probs=119.0
Q ss_pred CCCCCHHHHHHHHHHHHh-----------------CCCCEEEEcC-CccCcccc-HHHHHHHHhccCC----CCcEEEEe
Q 022377 12 PQLLSLNEILRLAYLFVT-----------------SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKG----LKTLAMTT 68 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-----------------~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~----~~~v~i~T 68 (298)
.+.|+..||..-+..+.+ ..+..|.|-| ||||++.+ +.+.++.+.+..+ -.+++|+|
T Consensus 132 ~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST 211 (371)
T PRK14461 132 LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVST 211 (371)
T ss_pred ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEe
Confidence 467898887755443322 1267899987 99999976 7788888866323 22689999
Q ss_pred CccchHhhHHHHHHcCC-CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHH
Q 022377 69 NGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEI 142 (298)
Q Consensus 69 NG~ll~~~~~~l~~~~~-~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i 142 (298)
-| +...+++|.+.++ ..+.|||++++.+.-+.+... .+.+.++++++...+..-.++.+..++.+|.|+ ++.
T Consensus 212 ~G--ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A 289 (371)
T PRK14461 212 VG--LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQA 289 (371)
T ss_pred ec--chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHH
Confidence 99 4455677766543 459999999999998888763 358999999988876533389999999999997 569
Q ss_pred HHHHHHHhhC------CCeeEEEeeecCCCCCCcc
Q 022377 143 CDFVELTRDR------PINIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 143 ~~i~~~~~~~------g~~~~~~~~~p~~~~~~~~ 171 (298)
.+++++++.. .+.+..+.|-|..+..+.+
T Consensus 290 ~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ 324 (371)
T PRK14461 290 AALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGR 324 (371)
T ss_pred HHHHHHHcCCccccCCceEEEEecCCCCCCCCCCC
Confidence 9999999987 6677788777766555554
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=102.43 Aligned_cols=157 Identities=26% Similarity=0.368 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcC-CccCcccc-HHHHHHHHhccC--CCCcEEEEeCccchHhhHHHHHHcCC-
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTG-GEPTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTLARKLPKLKESGL- 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~--~~~~v~i~TNG~ll~~~~~~l~~~~~- 85 (298)
...++.+|+..-+..+.+. .+..|.|+| ||||++.+ +.+.++.+.+.. +...+.++|-| +.+.+.+|....+
T Consensus 121 ~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N~d~vl~ai~~l~~~~~i~~r~itiST~G--~~~~i~rL~~~~v~ 198 (344)
T PRK14464 121 LRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIGHKNLVFSTVG--DPRVFERLPQQRVK 198 (344)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCCHHHHHHHHHHhhchhcCCCceEEEeccc--CchHHHHHHHhcCC
Confidence 3468999988766665553 478999999 99999875 667666664422 33357788888 3334566655333
Q ss_pred CeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCeeEEE
Q 022377 86 TSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VGYNPVKVNCVVMRGFND--DEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~~~~ 159 (298)
..+.+||++++++..+.+.... +.+.++++++.+.+ .|. ++.+.+++.+|.|+ +++.++.+++..+.+.+..+
T Consensus 199 ~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~gr-ri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLI 277 (344)
T PRK14464 199 PALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGY-PIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLI 277 (344)
T ss_pred hHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCC-EEEEEEEEeCCCCCCHHHHHHHHHHHhcccccccee
Confidence 3467899999999888887643 48889998888765 466 89999999999987 56999999998887888888
Q ss_pred eeecCCCCCCcc
Q 022377 160 EFMPFDGNVWNV 171 (298)
Q Consensus 160 ~~~p~~~~~~~~ 171 (298)
.|-|+.+..+.+
T Consensus 278 PyN~v~g~~~~r 289 (344)
T PRK14464 278 PYNSVDGDAYRR 289 (344)
T ss_pred cCCccCCCCccC
Confidence 777766655544
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-10 Score=98.53 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=141.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-CCEEEEcCCc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 10 PKPQLLSLNEILRLAYLFVTSG-VDKIRLTGGE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~-~~~v~~tGGE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
.+...|+.|++......+++.| .+.+..++|+ +---+.+.++++.+++..++. + +.|-|.+..+.+++|+++|++
T Consensus 79 ~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le-~-c~slG~l~~eq~~~L~~aGvd 156 (335)
T COG0502 79 KARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLE-V-CASLGMLTEEQAEKLADAGVD 156 (335)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcH-H-hhccCCCCHHHHHHHHHcChh
Confidence 3456799999999999999999 4556667877 533345778888888545885 5 458887778999999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC-C-eeEEEeeecC
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP-I-NIRFIEFMPF 164 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g-~-~~~~~~~~p~ 164 (298)
.++.-||+ +++.|+++....+|+..+++++.++++|+ .+.....+.-|...++..+++..+.++. . .+-+..|.|.
T Consensus 157 ~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~Gi-~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~ 234 (335)
T COG0502 157 RYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAGI-EVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPI 234 (335)
T ss_pred heeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcCC-ccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCC
Confidence 99999999 89999999999999999999999999999 8888877777788888777777777777 5 4667788899
Q ss_pred CCCCCcccCCCCHHHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
.+++....+.++..+.++.++-
T Consensus 235 ~GTPle~~~~~~~~e~lk~IA~ 256 (335)
T COG0502 235 PGTPLENAKPLDPFEFLKTIAV 256 (335)
T ss_pred CCCccccCCCCCHHHHHHHHHH
Confidence 8888876677888887777654
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-10 Score=102.19 Aligned_cols=137 Identities=16% Similarity=0.308 Sum_probs=113.3
Q ss_pred CCEEEEcCCccCcc--ccHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 32 VDKIRLTGGEPTVR--KDIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 32 ~~~v~~tGGEPll~--~~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
+..|.|.||.|++- .++.++++.+++..++. .+++.+|...+ ++.++.|+++|+..|++++++.+++..+.+.+
T Consensus 60 i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 139 (375)
T PRK05628 60 VSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDR 139 (375)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 56889999999974 35779998887743321 48888998777 57899999999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCC
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNV 168 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~ 168 (298)
..+.+.++++++.++++|+..+.+.+++ .||++.+++.+.++++.+++. .+.+..+.+..++.
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 8899999999999999999338888766 488999999999999999998 45566666554443
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=102.84 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=117.8
Q ss_pred CCCHHHHHHHHHHHHhC---------CCCEEEEcCCccCc--cccHHHHHHHHhccC----CCCcEEEEe-Cccch-Hhh
Q 022377 14 LLSLNEILRLAYLFVTS---------GVDKIRLTGGEPTV--RKDIEEACFHLSKLK----GLKTLAMTT-NGLTL-ARK 76 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~---------~~~~v~~tGGEPll--~~~~~~ii~~~~~~~----~~~~v~i~T-NG~ll-~~~ 76 (298)
.+..+.+.++++++... .+..|.|.||+|++ ..++.++++.+.+.. ++..+++.. +.-.+ ++.
T Consensus 192 ~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~ 271 (488)
T PRK08207 192 GLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK 271 (488)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHH
Confidence 34444566666665542 35689999999997 445889999887642 232344543 43344 679
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI- 154 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~- 154 (298)
++.|+++|+..|+|++++.++++.+.+.+..+++.++++++.++++|+..+.+...+ .||++.+++.+.++++.+++.
T Consensus 272 L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 272 LEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred HHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999777889999999999999998445555433 378999999999999999988
Q ss_pred eeEEEeeecCCCCCC
Q 022377 155 NIRFIEFMPFDGNVW 169 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~ 169 (298)
.+.+..+.+..++.+
T Consensus 352 ~isv~~L~i~~gT~l 366 (488)
T PRK08207 352 SLTVHTLAIKRASRL 366 (488)
T ss_pred EEEEEeceEcCCChH
Confidence 566667776655543
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=99.10 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=115.0
Q ss_pred CCEEEEcCCccCccc--cHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc
Q 022377 32 VDKIRLTGGEPTVRK--DIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG 108 (298)
Q Consensus 32 ~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~ 108 (298)
+..|.|.||.|++.+ ++.++++.+++.... .+++.+|...+ .+.++.++++|+.+|+|.+++.+++..+.+.+..+
T Consensus 59 i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~-eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 59 IDTVFFGGGTPSLVPPALIQDILKTLEAPHAT-EITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHhCCCC-eEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 568999999999976 477999998764355 59999999877 67899999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCC
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNV 168 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~ 168 (298)
.+.++++++.+++.|+..+.+..++. ||++.+++.+.++++.++++ .+.+..+.|..++.
T Consensus 138 ~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 138 SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 99999999999999994477765554 88899999999999999988 57777777765543
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-09 Score=92.56 Aligned_cols=169 Identities=13% Similarity=0.113 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHH---HHcCC-CeEE
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKL---KESGL-TSVN 89 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l---~~~~~-~~v~ 89 (298)
.+++...++.....+...+.|.||.|+..+. +.++++.+.+...+..+++.|+...+ ++.++.| .++|+ ..|.
T Consensus 63 ~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~ 142 (302)
T TIGR01212 63 KEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVE 142 (302)
T ss_pred HHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEE
Confidence 3456666665554443458889999997664 67999998875444357888887766 4444444 45688 5799
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+.+++.++++.+.+.+..+++.++++++.++++|+ .+.+.+.+. ||++.+++.+.++++.++++ .+.+..+.|..++
T Consensus 143 lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi-~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT 221 (302)
T TIGR01212 143 LGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGI-KVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGT 221 (302)
T ss_pred EccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCC-EEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCC
Confidence 99999999999999888889999999999999999 777766544 78899999999999999988 4677778887665
Q ss_pred CCccc------CCCCHHHHHHHHHH
Q 022377 168 VWNVK------KLVPYAEMLDTVVK 186 (298)
Q Consensus 168 ~~~~~------~~~~~~e~~~~i~~ 186 (298)
..... ..++.+++++.+..
T Consensus 222 ~L~~~~~~g~~~~~~~~e~~~~~~~ 246 (302)
T TIGR01212 222 KMAKMYEKGELKTLSLEEYISLACD 246 (302)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 43221 23455565555544
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=93.25 Aligned_cols=172 Identities=23% Similarity=0.355 Sum_probs=123.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-CC------CCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhH
Q 022377 11 KPQLLSLNEILRLAYLFVT-SG------VDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKL 77 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-~~------~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~ 77 (298)
-...|+..||..-+..+.+ ++ +..|.|-| ||||++.+ +...++.+.+..|+ .+++++|+| +...+
T Consensus 125 ~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsG--i~~~I 202 (349)
T COG0820 125 LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSG--IVPRI 202 (349)
T ss_pred ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCC--CchhH
Confidence 3457999998766555442 22 45788987 99999987 44777777654343 257899999 55567
Q ss_pred HHHHHcCC-CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH--hHHHHHHHHHh
Q 022377 78 PKLKESGL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND--DEICDFVELTR 150 (298)
Q Consensus 78 ~~l~~~~~-~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~--~~i~~i~~~~~ 150 (298)
.++.+..+ ..++|||++++.+.-+.+... .+.+..+++++...+. +. +|.+..++.++.|+ ++..++++++.
T Consensus 203 ~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~-rVt~EY~Ll~~VND~~e~A~~L~~ll~ 281 (349)
T COG0820 203 RKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR-RVTFEYVLLDGVNDSLEHAKELAKLLK 281 (349)
T ss_pred HHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc-eEEEEeeecccccCCHHHHHHHHHHhc
Confidence 77764333 359999999998887777643 3489999999998875 54 89999999999997 45788899998
Q ss_pred hCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 151 DRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
.....+..++|-|..+..+...+........+.+.
T Consensus 282 ~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 282 GIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred CCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 87778888888887766665433233333333443
|
|
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-11 Score=93.57 Aligned_cols=88 Identities=27% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCc---cccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV---RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll---~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
......++.+.+.++++.+.+.++..|.|+|||||+ .+.+.++++++++. +...+.+.|||+.+++...++....+
T Consensus 30 ~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~-~~~~~~~~tng~~~~~~~~~~~~~~~ 108 (139)
T PF13353_consen 30 FKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEK-FPKKIIILTNGYTLDELLDELIEELL 108 (139)
T ss_dssp TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHT-T-SEEEEEETT--HHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHh-CCCCeEEEECCCchhHHHhHHHHhcc
Confidence 345667899999999999988899999999999999 56688999999996 44348899999998765443333334
Q ss_pred CeEEEecCCCCH
Q 022377 86 TSVNISLDTLVP 97 (298)
Q Consensus 86 ~~v~iSldg~~~ 97 (298)
+.+.||+|+..+
T Consensus 109 ~~~~vsvd~~~~ 120 (139)
T PF13353_consen 109 DEIDVSVDGPFD 120 (139)
T ss_dssp HTESEEEE---S
T ss_pred CccEEEEEEech
Confidence 445566666443
|
|
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-08 Score=95.63 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=124.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------CccCc-cccHHHHHHHHhccCCCCcEEE-EeCccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTV-RKDIEEACFHLSKLKGLKTLAM-TTNGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------GEPll-~~~~~~ii~~~~~~~~~~~v~i-~TNG~ll-~~~~~~l~ 81 (298)
+....+.+++.+-++.+.+.|++.|.|+| |+|+. ++++.++++.+.+..++..+.+ ++|+..+ ++.++.+.
T Consensus 180 ~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~ 259 (459)
T PRK14338 180 RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVA 259 (459)
T ss_pred CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHh
Confidence 44678999999999999999999999998 78764 4568899999987545533554 4577666 45677777
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+. ++..+.+++++.++++.+.+++..+.+.+++.++.+++. |+ .+...+ +-.||++.+++.+.++++.+++++
T Consensus 260 ~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~ 338 (459)
T PRK14338 260 RLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDV-SLTTDIIVGHPGETEEQFQRTYDLLEEIRFDK 338 (459)
T ss_pred cccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 74 478899999999999999999888899999999999998 44 343333 345889999999999999999884
Q ss_pred eEEEeeecCCCCC
Q 022377 156 IRFIEFMPFDGNV 168 (298)
Q Consensus 156 ~~~~~~~p~~~~~ 168 (298)
+.+..|.|..++.
T Consensus 339 v~i~~ysp~pGT~ 351 (459)
T PRK14338 339 VHIAAYSPRPGTL 351 (459)
T ss_pred eEEEecCCCCCCh
Confidence 5677788876654
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=88.31 Aligned_cols=173 Identities=21% Similarity=0.221 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC----ccccHHHHHHHHhccC-CCCcE-EEEeCccchHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT----VRKDIEEACFHLSKLK-GLKTL-AMTTNGLTLAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl----l~~~~~~ii~~~~~~~-~~~~v-~i~TNG~ll~~ 75 (298)
+|+|.|.. ...++.++..++++.+.+.|+..|.+++|+|. +..+..++++++++.. +.. + .+.+|+ .+
T Consensus 5 lRDG~q~~--~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~-~~~l~~~~---~~ 78 (265)
T cd03174 5 LRDGLQSE--GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVK-LQALVRNR---EK 78 (265)
T ss_pred CCCcccCC--CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcE-EEEEccCc---hh
Confidence 46766665 56779999999999999999999999999998 7788899999998853 354 5 677777 66
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhc---CC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecC--CCHhHHHHHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLT---RR-KGHEKVMESINAAIEVGYNPVKVNCVVMRG--FNDDEICDFVELT 149 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir---~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~--~n~~~i~~i~~~~ 149 (298)
.++.+.+++++.|.+++++. + .|+... +. ..++.+++.++.+++.|+ .+.+++...-+ .|.+++.++++.+
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s-~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 79 GIERALEAGVDEVRIFDSAS-E-THSRKNLNKSREEDLENAEEAIEAAKEAGL-EVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hHHHHHhCCcCEEEEEEecC-H-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 79999999999999999885 3 555552 21 249999999999999999 89888843334 7999999999999
Q ss_pred hhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 150 RDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 150 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.|++ .+.+.+..+. . .+....+++..+.+.++
T Consensus 156 ~~~g~~--~i~l~Dt~G~-~---~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 156 EEAGAD--EISLKDTVGL-A---TPEEVAELVKALREALP 189 (265)
T ss_pred HHcCCC--EEEechhcCC-c---CHHHHHHHHHHHHHhCC
Confidence 999975 3334443222 1 11234455556665553
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=90.60 Aligned_cols=171 Identities=22% Similarity=0.285 Sum_probs=125.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccC-CCCcEEEE----------eCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-GLKTLAMT----------TNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~-~~~~v~i~----------TNG~ll~~~~~~ 79 (298)
..++.|++.+.++++.+.|+..|.|+||+ |.+..+ +.++++.+++.. ++. +... ++|....+.++.
T Consensus 34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~-~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVH-IHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCce-EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 46999999999999999999999999885 666666 569999998852 342 3322 456556788999
Q ss_pred HHHcCCCeEE-EecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+. ++.+..+++..+.+...+ +.++.++.++.+++.|+ ++...+++.-+++.++..+.+.++++++.+ .
T Consensus 113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi-~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~ 191 (309)
T TIGR00423 113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGI-PTTATMMFGHVENPEHRVEHLLRIRKIQEKTG 191 (309)
T ss_pred HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CceeeEEecCCCCHHHHHHHHHHHHhhchhhC
Confidence 9999999885 688888888887886544 68999999999999999 887777666557888998999999987763 2
Q ss_pred EEEeeecC----CCCC-Cccc--CCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNV-WNVK--KLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~-~~~~--~~~~~~e~~~~i~ 185 (298)
.+..|.|. .+++ .... ...+..+.++.++
T Consensus 192 ~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA 227 (309)
T TIGR00423 192 GFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIA 227 (309)
T ss_pred CeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHH
Confidence 33333442 1222 2211 3466677666554
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=93.50 Aligned_cols=149 Identities=10% Similarity=0.180 Sum_probs=118.2
Q ss_pred HHHHHHHHHh-----CCCCEEEEcCCccCccc--cHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeE
Q 022377 20 ILRLAYLFVT-----SGVDKIRLTGGEPTVRK--DIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSV 88 (298)
Q Consensus 20 ~~~~i~~~~~-----~~~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v 88 (298)
+..+++++.. .++..|.|.||.|++-+ .+.++++.+++..++. .+++.+|...+ .+.++.|+++|+.+|
T Consensus 50 ~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnri 129 (400)
T PRK07379 50 VEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRV 129 (400)
T ss_pred HHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEE
Confidence 3345555543 23678999999999753 3679999887743332 58899997666 678999999999999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
+|.+++.+++..+.+.+..+.+.+.++++.++++|+..+.+..++. ||++.+++.+.++++.+++. .+.+..+.+..+
T Consensus 130 slGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pg 209 (400)
T PRK07379 130 SLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPG 209 (400)
T ss_pred EEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCC
Confidence 9999999999999998888999999999999999993377766544 88899999999999999887 566667776655
Q ss_pred CC
Q 022377 167 NV 168 (298)
Q Consensus 167 ~~ 168 (298)
+.
T Consensus 210 T~ 211 (400)
T PRK07379 210 TA 211 (400)
T ss_pred ch
Confidence 43
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=92.82 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=108.8
Q ss_pred CCCEEEEcCCccCc-ccc-HHHHHHHHhccCCC---CcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 31 GVDKIRLTGGEPTV-RKD-IEEACFHLSKLKGL---KTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 31 ~~~~v~~tGGEPll-~~~-~~~ii~~~~~~~~~---~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
.+..|.|.||.|++ .++ +.++++.+++...+ ..+++.+|...+ .+.++.|+++|+.+|+|.+++.+++..+.+.
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg 141 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG 141 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC
Confidence 36789999999965 555 55788888774222 259999999877 6799999999999999999999999998988
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+..+.+.++++++.+++.+. .+.+..++ .||++.+++.+-++.+.+++. ++++..+.+..++
T Consensus 142 R~h~~~~~~~ai~~~~~~~~-~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT 205 (390)
T PRK06582 142 RTHDCMQAIKTIEAANTIFP-RVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGT 205 (390)
T ss_pred CCCCHHHHHHHHHHHHHhCC-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCC
Confidence 88889999999999998855 67766543 477888889888888888887 5666666655444
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=91.48 Aligned_cols=168 Identities=23% Similarity=0.251 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-Ccc-------------ccHHHHHHHHhcc---CCCCcEEEEeCccch-H
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVR-------------KDIEEACFHLSKL---KGLKTLAMTTNGLTL-A 74 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-ll~-------------~~~~~ii~~~~~~---~~~~~v~i~TNG~ll-~ 74 (298)
..+|.|++.+.++++.+.|+..|.|+|||+ .+. +++.++++.+.+. .++. ..+|...+ +
T Consensus 39 ~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~---~~~~~~~lt~ 115 (336)
T PRK06245 39 SLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLL---PHTNAGILTR 115 (336)
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCC---ccccCCCCCH
Confidence 489999999999999999999999999997 444 2233444332221 2332 34665555 6
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhc---CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLT---RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir---~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+.++.|++++.. +.+++++.++..++.+. ....++..++.++.+++.|+ ++...+.+.-+++.+++.+.+.++.+
T Consensus 116 e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi-~~~~~~i~G~gEt~ed~~~~l~~l~~ 193 (336)
T PRK06245 116 EEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKI-PFTTGILIGIGETWEDRAESLEAIAE 193 (336)
T ss_pred HHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCC-ceeeeeeeECCCCHHHHHHHHHHHHH
Confidence 789999998765 68888998888876552 23458899999999999999 77655555556788887776666665
Q ss_pred CC-----C-eeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 152 RP-----I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 152 ~g-----~-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
+. + .+....|.|..++........+.++.++.++
T Consensus 194 l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia 233 (336)
T PRK06245 194 LHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVA 233 (336)
T ss_pred HHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHH
Confidence 43 3 3556677777666553334456666666544
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-10 Score=87.40 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCC--CEEEEcCCccCcc---ccHHHHHHHHhccCC--CCcEEEEeCccchHh-hHHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGV--DKIRLTGGEPTVR---KDIEEACFHLSKLKG--LKTLAMTTNGLTLAR-KLPKLK 81 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~--~~v~~tGGEPll~---~~~~~ii~~~~~~~~--~~~v~i~TNG~ll~~-~~~~l~ 81 (298)
.....++.+++.++++.+...+. ..|.|+||||||+ +++.++++++++. + + .+.+.|||++..+ ......
T Consensus 24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~-~~~~-~i~i~TNg~~~~~~~~~~~~ 101 (119)
T PF13394_consen 24 KKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKER-GPEI-KIRIETNGTLPTEEKIEDWK 101 (119)
T ss_dssp -GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTTHHHHHHHHCTSTT-------EEEEEE-STTHHHHHH----
T ss_pred ccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccCHHHHHHHHHHHHhh-CCCc-eEEEEeCCeeccccchhhcc
Confidence 34577899999999998888765 5799999999976 3477888888885 5 7 4999999998833 321111
Q ss_pred H--cCC--CeEEEecCC
Q 022377 82 E--SGL--TSVNISLDT 94 (298)
Q Consensus 82 ~--~~~--~~v~iSldg 94 (298)
+ .-+ ..+.||+||
T Consensus 102 ~~~~~ls~k~~~~s~~g 118 (119)
T PF13394_consen 102 NLEECLSIKYIDVSVDG 118 (119)
T ss_dssp -----------------
T ss_pred ccccccccccccccccC
Confidence 1 112 256688887
|
|
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-08 Score=89.51 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=122.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC-------CccCccccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG-------GEPTVRKDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG-------GEPll~~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+....+.+++.+-++.+.+.|++.|.|+| |++...+++.++++.+.+. ++..+.+.+ |...+ ++.++.|+
T Consensus 163 ~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~-~i~~ir~~~~~p~~i~~ell~~l~ 241 (440)
T PRK14334 163 PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS-GIPRVKFTTSHPMNFTDDVIAAMA 241 (440)
T ss_pred CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc-CCcEEEEccCCcccCCHHHHHHHH
Confidence 33467899999888888888988888864 5554456788888888764 653466654 66666 56788888
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+. ++..+.|++++.++++.+.+++..+.+.+++.++.+++++. .+.+++ +-.||++.+++++.++++.+++.+
T Consensus 242 ~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~-~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~ 320 (440)
T PRK14334 242 ETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALP-DVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDS 320 (440)
T ss_pred hcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 74 48999999999999999998888889999999999999987 554443 334889999999999999999884
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+..|.|..++..
T Consensus 321 i~~f~ysp~pGT~~ 334 (440)
T PRK14334 321 AYMFIYSPRPGTPS 334 (440)
T ss_pred eeeeEeeCCCCChh
Confidence 56667888776654
|
|
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-08 Score=85.53 Aligned_cols=166 Identities=18% Similarity=0.207 Sum_probs=126.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc-----cHHHHHHHHhcc-CCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK-----DIEEACFHLSKL-KGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-----~~~~ii~~~~~~-~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
....+.+++.++++.+.+.|+..|.|++|.=..++ .+.++++.+++. .++ .+.+.|-+.+. .+.++.|+++|
T Consensus 127 p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i-~Ie~L~pdf~~d~elL~~L~eAG 205 (349)
T PLN02428 127 PPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEI-LVEALVPDFRGDLGAVETVATSG 205 (349)
T ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCc-EEEEeCccccCCHHHHHHHHHcC
Confidence 45677888889999999999999999988522223 477899998874 345 36665555443 56899999999
Q ss_pred CCeEEEecCCCCHHhhhhhc-CCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE-e
Q 022377 85 LTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI-E 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~-~ 160 (298)
++.++..+++ .+..++.++ ...++++.++.++.+++. |+ .+...+++.-|++.+++.++++++.++|+++..+ +
T Consensus 206 ~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi-~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigq 283 (349)
T PLN02428 206 LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGL-LTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQ 283 (349)
T ss_pred CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecc
Confidence 9999999998 578899998 556899999999999998 88 7766666666899999999999999999975444 5
Q ss_pred eecCCCCCCcccCCCCHHHH
Q 022377 161 FMPFDGNVWNVKKLVPYAEM 180 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~ 180 (298)
|+......+.-..+.+.+++
T Consensus 284 yL~Ps~~h~~v~~~v~p~~f 303 (349)
T PLN02428 284 YLRPTKRHLPVKEYVTPEKF 303 (349)
T ss_pred ccCCCcceeeeecccCHHHH
Confidence 54333333443455566554
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-08 Score=88.51 Aligned_cols=170 Identities=21% Similarity=0.185 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccC-ccc-cHHHHHHHHhcc-CCCCcEEEE----------eCccchHhhHHHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPT-VRK-DIEEACFHLSKL-KGLKTLAMT----------TNGLTLARKLPKL 80 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl-l~~-~~~~ii~~~~~~-~~~~~v~i~----------TNG~ll~~~~~~l 80 (298)
.|+.|++.+.+.++.+.|+..|.++||+.. +.. .+.++++.+++. .++. +... +.|....+.+++|
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~-i~~~~~~ei~~~~~~~g~~~~e~l~~L 156 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLH-VKAFTAVEIHHFSKISGLPTEEVLDEL 156 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCce-EEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 489999999999999999999999999854 332 366999999875 2343 4332 2454556789999
Q ss_pred HHcCCCeEE-EecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eE
Q 022377 81 KESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IR 157 (298)
Q Consensus 81 ~~~~~~~v~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~ 157 (298)
+++|++.+. ..+...+++.+..+...+ ++++.++.++.++++|+ ++...+++..|++.++..+.+..+++++.. .-
T Consensus 157 keAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi-~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~ 235 (351)
T TIGR03700 157 KEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGL-KTNATMLYGHIETPAHRVDHMLRLRELQDETGG 235 (351)
T ss_pred HHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-CcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCC
Confidence 999999886 577777778888887654 58999999999999999 888887777788888888888888887763 23
Q ss_pred EEeeecC----CCCCCccc--CCCCHHHHHHHHH
Q 022377 158 FIEFMPF----DGNVWNVK--KLVPYAEMLDTVV 185 (298)
Q Consensus 158 ~~~~~p~----~~~~~~~~--~~~~~~e~~~~i~ 185 (298)
+..|+|. .+++.... ...+..+.++.++
T Consensus 236 f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA 269 (351)
T TIGR03700 236 FQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLA 269 (351)
T ss_pred ceEEEeecccCCCCcccCCCCCCCCHHHHHHHHH
Confidence 3445554 23333322 3466677666554
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-08 Score=90.59 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=111.7
Q ss_pred CCCEEEEcCCccCccc--cHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 31 GVDKIRLTGGEPTVRK--DIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 31 ~~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
.+..|.|.||.|++-+ .+.++++.+++...+. .+++.+|...+ .+.++.|+++|+.+|++.+.+.++++.+.+.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~ 134 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG 134 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 4679999999999875 3779999888743321 48999998777 5799999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+..+.+.+.++++.+++++. .+.+..++. ||++.+++.+-++.+.+++. .+.+..+.+..++
T Consensus 135 R~~~~~~~~~ai~~~~~~~~-~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT 198 (380)
T PRK09057 135 RLHSVAEALAAIDLAREIFP-RVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGT 198 (380)
T ss_pred CCCCHHHHHHHHHHHHHhCc-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCC
Confidence 88889999999999999876 777776555 88888888888888888887 4666666665443
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.3e-08 Score=88.02 Aligned_cols=137 Identities=17% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCEEEEcCCccCccc--cHHHHHHHHhccCCC---CcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 32 VDKIRLTGGEPTVRK--DIEEACFHLSKLKGL---KTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 32 ~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~---~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
+..|.|.||.|++-+ ++.++++.+++...+ ..+++.+|...+ .+.++.|+++|++.|+|.+++.+++..+.+.+
T Consensus 74 i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R 153 (394)
T PRK08898 74 VHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGR 153 (394)
T ss_pred eeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCC
Confidence 568999999999854 377999988875332 259999997666 67899999999999999999999999998887
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCCC
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVW 169 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~~ 169 (298)
..+.+.+.+.++.+++.+. .+.+..++. ||++.+++.+.++.+.+++. .+.+..+.+..++.+
T Consensus 154 ~~~~~~~~~~i~~~~~~~~-~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l 218 (394)
T PRK08898 154 IHDGAEARAAIEIAAKHFD-NFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLF 218 (394)
T ss_pred CCCHHHHHHHHHHHHHhCC-ceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChh
Confidence 7788999999999998765 677766544 78899999999999999887 577777777655543
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-07 Score=82.96 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=117.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc----ccHHHHHHHHhcc-CCCCcEEEEeCccc-hHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR----KDIEEACFHLSKL-KGLKTLAMTTNGLT-LARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~----~~~~~ii~~~~~~-~~~~~v~i~TNG~l-l~~~~~~l~~~~ 84 (298)
....+.+++.+.++.+.+.|+..|.|+||+ +-+. .++.++++.+++. .++. +.+.|.-.. ..+.++.++++|
T Consensus 88 ~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~-Ievl~~d~~g~~e~l~~l~~aG 166 (302)
T TIGR00510 88 PLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIK-IETLVPDFRGNIAALDILLDAP 166 (302)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCE-EEEeCCcccCCHHHHHHHHHcC
Confidence 344689999999999999999999999876 3231 2477999999874 4563 777664322 356789999999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee-EEEee
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI-RFIEF 161 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~-~~~~~ 161 (298)
.+.++.-+.+. +..+..+|...++++.++.++.+++. |+ .+...+++.-|++.+++.+.++++.+.|++. .+.+|
T Consensus 167 ~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi-~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqY 244 (302)
T TIGR00510 167 PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNL-PTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQY 244 (302)
T ss_pred chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecc
Confidence 99999999986 78999999888899999999999998 67 6766665555899999999999999999853 34455
Q ss_pred e
Q 022377 162 M 162 (298)
Q Consensus 162 ~ 162 (298)
+
T Consensus 245 l 245 (302)
T TIGR00510 245 L 245 (302)
T ss_pred c
Confidence 4
|
The family shows strong sequence conservation. |
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-07 Score=86.94 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=119.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc------CCccCcc-ccHHHHHHHHhccCCCCcEEE-EeCccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT------GGEPTVR-KDIEEACFHLSKLKGLKTLAM-TTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t------GGEPll~-~~~~~ii~~~~~~~~~~~v~i-~TNG~ll-~~~~~~l~~ 82 (298)
-...+++++.+-++.+.+.|.+.|.|+ +|+|+.+ +.+.++++.+.+..++..+.+ .++...+ ++.++.+++
T Consensus 161 ~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~ 240 (430)
T TIGR01125 161 LRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAE 240 (430)
T ss_pred ceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhh
Confidence 455678888887777777888888876 4777765 468899999987533532332 2444445 567888888
Q ss_pred cC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE---ecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 83 SG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV---MRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 83 ~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi---~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
++ +..+.+++++.+++..+.+++..+.+.+.++++.+++++. .+.+.+.+ .||++.+++.+.++++.+.+++ +
T Consensus 241 ~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~-~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~ 319 (430)
T TIGR01125 241 GPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCP-DAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRL 319 (430)
T ss_pred CCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCC-CCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 74 6889999999999999999887889999999999999854 44444332 3788999999999999998884 5
Q ss_pred EEEeeecCCCCCC
Q 022377 157 RFIEFMPFDGNVW 169 (298)
Q Consensus 157 ~~~~~~p~~~~~~ 169 (298)
.+..|.|..++..
T Consensus 320 ~~~~~sp~pGT~~ 332 (430)
T TIGR01125 320 GAFTYSPEEGTDA 332 (430)
T ss_pred eeeeccCCCCCcc
Confidence 6677888876654
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-08 Score=89.23 Aligned_cols=163 Identities=18% Similarity=0.356 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------------------CccCccccHHHHHHHHhccCCCCcEEEE---eC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------------------GEPTVRKDIEEACFHLSKLKGLKTLAMT---TN 69 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------------------GEPll~~~~~~ii~~~~~~~~~~~v~i~---TN 69 (298)
+-...++|++.+-++.+.+.|++.|.|+| |+|+ +..+.++++.+.+. ++. +.+. ++
T Consensus 164 ~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-~~~~~~Ll~~l~~~-~~~-~r~~~~~p~ 240 (440)
T PRK14862 164 DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV-KTRMTDLCEALGEL-GAW-VRLHYVYPY 240 (440)
T ss_pred CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccch-hhHHHHHHHHHHhc-CCE-EEEecCCCC
Confidence 34567888888888888778888888763 4455 56788999999885 663 4433 33
Q ss_pred ccchHhhHHHHHHcCCC--eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE---ecCCCHhHHHH
Q 022377 70 GLTLARKLPKLKESGLT--SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV---MRGFNDDEICD 144 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~--~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi---~~~~n~~~i~~ 144 (298)
+ ..++.++.+++ +.. .+.|++++.+++..+.+++..+++.+++.++.+++.+. .+.+.+.+ .||++.+++++
T Consensus 241 ~-~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~-~i~i~t~~IvGfPgET~edf~~ 317 (440)
T PRK14862 241 P-HVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICP-DLTIRSTFIVGFPGETEEDFQM 317 (440)
T ss_pred c-CCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCC-CceecccEEEECCCCCHHHHHH
Confidence 3 34667788877 533 78999999999999999887789999999999999743 34444432 38899999999
Q ss_pred HHHHHhhCCCe-eEEEeeecCCCCCCc-ccCCCCHHH
Q 022377 145 FVELTRDRPIN-IRFIEFMPFDGNVWN-VKKLVPYAE 179 (298)
Q Consensus 145 i~~~~~~~g~~-~~~~~~~p~~~~~~~-~~~~~~~~e 179 (298)
.++|+.+++++ +.+..|.|..++... ....++.++
T Consensus 318 tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~ 354 (440)
T PRK14862 318 LLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEV 354 (440)
T ss_pred HHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHH
Confidence 99999999984 567788898876543 223455433
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=90.39 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHH-hCCCCEEEEcCCccCcccc-HHHHHHHHhccCC-CC-cEEEEeCccch---HhhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFV-TSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKG-LK-TLAMTTNGLTL---ARKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~-~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~-~~-~v~i~TNG~ll---~~~~~~l~~~~~ 85 (298)
..-+++.+.+=|+.+. +.|+..+.|...+|++++. +.++++.+.+. + +. .+.+.|....+ ++.++.++++|+
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~-~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIAR-NPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhc-CCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 3456777666666554 4788999999999999875 66999988774 3 32 24555655433 357899999999
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-eEEEeeec
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMP 163 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p 163 (298)
..|.+.+++.+++..+.+++..+.+.+.++++.++++|+ .+.+.+++. |+++.+++.+.++++.+++.+ +.+..+.|
T Consensus 299 ~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi-~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP 377 (497)
T TIGR02026 299 VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNI-LSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTP 377 (497)
T ss_pred cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-cEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecC
Confidence 999999999999999999888889999999999999999 788776555 788999999999999998874 45556667
Q ss_pred CCCC
Q 022377 164 FDGN 167 (298)
Q Consensus 164 ~~~~ 167 (298)
..++
T Consensus 378 ~PGT 381 (497)
T TIGR02026 378 WPFT 381 (497)
T ss_pred CCCc
Confidence 6554
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=87.65 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccCcccc-HHHHHHHHhccC--CCCcEEEEeCccch-HhhHHHHHHcCCCeEEEe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTL-ARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~--~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iS 91 (298)
+......++.++..++...+.+|||||++.-+ ..++++.+++.. ++ ++++-|+|.+. .+.++.|.++|+|.|.+.
T Consensus 63 pV~~~eDii~ea~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~efG~~f-HiHLYT~g~~~~~e~l~~L~eAGLDEIRfH 141 (353)
T COG2108 63 PVKSVEDIIEEAKLMDALGASITGGDPLLEIERTVEYIRLLKDEFGEDF-HIHLYTTGILATEEALKALAEAGLDEIRFH 141 (353)
T ss_pred ccCcHHHHHHHHHHhccccccccCCChHHHHHHHHHHHHHHHHhhccce-eEEEeeccccCCHHHHHHHHhCCCCeEEec
Confidence 33344556777777777889999999999876 778888888853 36 49999999988 568999999999999999
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
.+.++ ....++.+++++.++++|. .+++.+-..|| -.+.+.++++++.+.+.++
T Consensus 142 p~~~~---------~~~~e~~i~~l~~A~~~g~-dvG~EiPaipg-~e~~i~e~~~~~~~~~~~F 195 (353)
T COG2108 142 PPRPG---------SKSSEKYIENLKIAKKYGM-DVGVEIPAIPG-EEEAILEFAKALDENGLDF 195 (353)
T ss_pred CCCcc---------ccccHHHHHHHHHHHHhCc-cceeecCCCcc-hHHHHHHHHHHHHhcccce
Confidence 86321 2346899999999999999 99999999995 5677889999999888653
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=86.46 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-cc-HHHHHHHHhcc-CCCCcEEEE----------eCccchHhhHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KD-IEEACFHLSKL-KGLKTLAMT----------TNGLTLARKLP 78 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~-~~~ii~~~~~~-~~~~~v~i~----------TNG~ll~~~~~ 78 (298)
..|+.|++.+.++++.+.|+..+.++||+ |... .+ +.++++.+++. .++. +... +.|.+..+.++
T Consensus 89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~-i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIH-LHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcc-eeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 35999999999999999999999999985 7665 44 55899999874 2343 3322 46766678899
Q ss_pred HHHHcCCCeEE-EecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 79 KLKESGLTSVN-ISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 79 ~l~~~~~~~v~-iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+|+++|++.+. .+-...+++....+... .+++..++.++.++++|+ ++...+++.-|++.++..+.+.++++++.+
T Consensus 168 ~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl-~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~ 246 (371)
T PRK07360 168 ALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGL-PTTSTMMYGHVETPEHRIDHLLILREIQQET 246 (371)
T ss_pred HHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CceeeEEeeCCCCHHHHHHHHHHHHHhchhh
Confidence 99999999874 11111223333334443 368888999999999999 888887777788999999999999988763
Q ss_pred eEEEeeec
Q 022377 156 IRFIEFMP 163 (298)
Q Consensus 156 ~~~~~~~p 163 (298)
..+..|+|
T Consensus 247 ~g~~~fIp 254 (371)
T PRK07360 247 GGITEFVP 254 (371)
T ss_pred CCeeEEEe
Confidence 34445555
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-08 Score=86.16 Aligned_cols=169 Identities=22% Similarity=0.232 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-----------------ccHHHHHHHHhccCCCCcEEEEeCccchH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-----------------KDIEEACFHLSKLKGLKTLAMTTNGLTLA 74 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-----------------~~~~~ii~~~~~~~~~~~v~i~TNG~ll~ 74 (298)
..++.|++.+.++++.+.|+..+.++||+ |-.. ..+.++++.+++..++. .. .+-|.+.+
T Consensus 33 ~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~-~~-~~~g~lt~ 110 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLL-PH-TNPGVMSR 110 (322)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCc-cc-cCCCCCCH
Confidence 37999999999999999999999999988 5442 22457777776533542 33 34455557
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcC----CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTR----RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~----~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
+.++.|+++|.+ +.+++++.++..+..++. ...++..++.++.+++.|+ ++...+.+..|++.+++.+.+..++
T Consensus 111 e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi-~~~s~~i~G~gEt~ed~~~~l~~lr 188 (322)
T TIGR03550 111 DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKI-PFTTGILIGIGETREERAESLLAIR 188 (322)
T ss_pred HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCC-CccceeeEeCCCCHHHHHHHHHHHH
Confidence 889999999976 688888876665544442 2357888999999999999 8888877777889999999988888
Q ss_pred hCC-----C-eeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 151 DRP-----I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 151 ~~g-----~-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
++. + .+..+.|.|..+++.......+..+.++.++
T Consensus 189 ~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iA 229 (322)
T TIGR03550 189 ELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVA 229 (322)
T ss_pred HHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHH
Confidence 765 4 3444567777555544444567777766543
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-07 Score=81.45 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCC--ccCcccc---HHHHHHHHhcc-CCCCcEEEEeCccc--hHhhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGG--EPTVRKD---IEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGG--EPll~~~---~~~ii~~~~~~-~~~~~v~i~TNG~l--l~~~~~~l~~~ 83 (298)
...++.+|+.++.+...+.|+..+.+|-| ..+-..+ +.+.++.+++. .++. +.+.+ |-+ ..+.++.|+++
T Consensus 174 p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~-Ievli-gDf~g~~e~l~~L~eA 251 (398)
T PTZ00413 174 PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELL-LEALV-GDFHGDLKSVEKLANS 251 (398)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCe-EEEcC-CccccCHHHHHHHHhc
Confidence 47799999999999999999988888754 3344443 56778888773 2443 44433 323 25689999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHc---CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 84 GLTSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEV---GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~---g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
|++.++-.|++ .+..|..+|. ..+|++.++.|+.+++. |+ .+....++..|++.+|+.++++.+.++|+++..+
T Consensus 252 G~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi-~tcSGiIVGLGET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 252 PLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAM-LTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred CCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCc-eEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEee
Confidence 99999999999 5899999995 56899999999999987 77 7777888888999999999999999999976554
Q ss_pred -eeecCCCCCCcccCCCCHHHH
Q 022377 160 -EFMPFDGNVWNVKKLVPYAEM 180 (298)
Q Consensus 160 -~~~p~~~~~~~~~~~~~~~e~ 180 (298)
+|+......+.-....+.+++
T Consensus 330 GQYL~Ps~~h~~V~~yv~P~~F 351 (398)
T PTZ00413 330 GQYLQPTKTRLKVSRYAHPKEF 351 (398)
T ss_pred ccccCCCcccCCceeccCHHHH
Confidence 665433333333344555554
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=88.73 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
...+.|.+.+=|+.+.+. ++..+.|.++.++..++ +.++++.+++. ++. +.+.+...+..+.++.++++|+..|.
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~-~i~-~~~~~~~~~~~e~l~~l~~aG~~~v~ 302 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPL-GVT-WSCNARANVDYETLKVMKENGLRLLL 302 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhc-Cce-EEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 346788777766666553 67889888877777665 66999998874 774 77776655446789999999999999
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~ 167 (298)
+.+++.+++..+.++++.+.+.+.+.++.++++|+ .+...+++. ||++.+++.+.++++.+++.+ +.+..+.|..++
T Consensus 303 iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi-~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGI-KVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred EcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-eEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 99999999999999887789999999999999999 888777555 889999999999999998874 444455666555
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-07 Score=80.56 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=124.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc----cCcc-ccHHHHHHHHhcc-CCCCcEEEEeCccc--hHhhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTVR-KDIEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE----Pll~-~~~~~ii~~~~~~-~~~~~v~i~TNG~l--l~~~~~~l~~~ 83 (298)
...++.+++.+.++.+.+.|++.|.++||. |-.. ..+.++++.+++. ..+ .+.+.|-..+ ..+.+..++++
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHc
Confidence 456999999999999999999999999875 2221 2477999999885 345 3666555433 35678999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEe
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIE 160 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~ 160 (298)
|.+.+..-+.+. ++.++.+++..++++.++.++.+++.| + .+...+++.-|++.+++.+.++++.+++++ +...+
T Consensus 163 g~~i~~hnlEt~-~~vl~~m~r~~t~e~~le~l~~ak~~gp~i-~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETV-PRLQKAVRRGADYQRSLDLLARAKELAPDI-PTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCc-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCc-eecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 987777667764 789999998888999999999999998 7 666666555688999999999999999985 34446
Q ss_pred eecCCCCCCcccCCCCHHHH
Q 022377 161 FMPFDGNVWNVKKLVPYAEM 180 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~ 180 (298)
|++.....+.-....+.++.
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f 260 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEF 260 (290)
T ss_pred CCCCCccCCceeeccCHHHH
Confidence 65544444433444555544
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-07 Score=83.60 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhcc-CCCCcEEEE----------eCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKL-KGLKTLAMT----------TNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~-~~~~~v~i~----------TNG~ll~~~~~~ 79 (298)
..|+.|++.+.+.++.+.|+..|.+.||+ |.+..+ +.++++.+++. .++. +... +.|....+.+..
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~-i~a~s~~Ei~~~a~~~g~~~~e~l~~ 156 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLH-VKAMTAAEVDFLSRKFGKSYEEVLED 156 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCce-EeeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45999999999999999999999998765 666444 55999999874 2453 4432 455566789999
Q ss_pred HHHcCCCeEEE-ecCCCCHHhhhhhcCCCc-HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVNI-SLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~i-Sldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+.- +..-.+++.+..+...+. .++.++.++.++++|+ ++...+++.-+++.++..+.+..++++..+ .
T Consensus 157 LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi-~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~ 235 (353)
T PRK08444 157 MLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGK-MSNATMLFGHIENREHRIDHMLRLRDLQDKTG 235 (353)
T ss_pred HHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEEecCCCHHHHHHHHHHHHHhccccC
Confidence 99999995543 223334455577766554 6888888899999999 887777776678888888888888887663 3
Q ss_pred EEEeeecC----CCCCCcccCCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~~~~~~~~~~~e~~~~i~ 185 (298)
-+..|.|. .+++.......+..+.++.++
T Consensus 236 gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iA 268 (353)
T PRK08444 236 GFNAFIPLVYQRENNYLKVEKFPSSQEILKTIA 268 (353)
T ss_pred CceEEEecccCCCCCcCCCCCCCCHHHHHHHHH
Confidence 44555554 334443334577777766554
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-07 Score=86.72 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=111.6
Q ss_pred CCEEEEcCCccCcc-c-cHHHHHHHHhccC----CCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 32 VDKIRLTGGEPTVR-K-DIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 32 ~~~v~~tGGEPll~-~-~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
+..|.|.||.|++- + ++.++++.+++.. +. .+++.+|...+ ++.++.++++|+.+|+|.+++.+++..+.+.
T Consensus 115 i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~-eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg 193 (449)
T PRK09058 115 IHAVYFGGGTPTALSAEDLARLITALREYLPLAPDC-EITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAG 193 (449)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC
Confidence 56889999999975 3 4778888887743 34 48999997766 6789999999999999999999999999988
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNV 168 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~ 168 (298)
+..+.+.+++.++.+++.|+..+.+..++. ||++.+.+.+.++++.+++. .+.+..+.+..++.
T Consensus 194 R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~ 259 (449)
T PRK09058 194 RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTP 259 (449)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCH
Confidence 888899999999999999953677766544 88899999999999999888 46666666655443
|
|
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=80.51 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-CCEEEEcCCccCccc--c-HHHHHHHHhccCCCCcEEEEeCccchHhhHH-----HHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRK--D-IEEACFHLSKLKGLKTLAMTTNGLTLARKLP-----KLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~--~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~-----~l~ 81 (298)
...+|+.+++.++++.+.+.+ +..|.|+|||||+++ + +.++++++++..++. ..+.|||+...+.++ .+.
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~-~~~~~tG~~~~~~~~~~~~~~~l 120 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEK-DIWLWTGYTWEEILEDEKHLEVL 120 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCC-CEEEeeCccHHHHhcchhHHHHH
Confidence 356899999999999888775 678999999999987 4 569999998744664 667799998866543 454
Q ss_pred HcCCCeEEEecCCCCHHh--hhhhcCC
Q 022377 82 ESGLTSVNISLDTLVPAK--FEFLTRR 106 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~--~~~ir~~ 106 (298)
+ .+| +-|.....+++. +..++|.
T Consensus 121 ~-~~D-~liDgk~~~~~~~~~~~~~gs 145 (154)
T TIGR02491 121 K-YID-VLVDGKFELSKKDLKLKFRGS 145 (154)
T ss_pred h-hCC-EEEechhhhhcccCCCCCCCC
Confidence 4 467 544444443332 4345553
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-07 Score=82.93 Aligned_cols=158 Identities=15% Similarity=0.233 Sum_probs=121.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~~ 82 (298)
+....+++++.+=++.+.+.|++.|.|+|...+.+ ..+.++++.+.+..++..+.+.+ +...+ ++.++.+.+
T Consensus 171 ~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~ 250 (437)
T PRK14331 171 KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMAD 250 (437)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHc
Confidence 34567889988888888888999999999887764 34778888877654543355544 22234 567888887
Q ss_pred c--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 83 S--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 83 ~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
+ ++..+.+++++.+++.-+.+++..+.+.+.+.++.++++ |+ .+...+ +-.||++.+++.+.++++.+++.+ +
T Consensus 251 ~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi-~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i 329 (437)
T PRK14331 251 IPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDI-TFSTDIIVGFPTETEEDFEETLDVLKKVEFEQV 329 (437)
T ss_pred CCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEecCEEEECCCCCHHHHHHHHHHHHhcCccee
Confidence 7 488999999999999999988877899999999999998 77 555544 444899999999999999998874 3
Q ss_pred EEEeeecCCCCCC
Q 022377 157 RFIEFMPFDGNVW 169 (298)
Q Consensus 157 ~~~~~~p~~~~~~ 169 (298)
....|.|..++..
T Consensus 330 ~~f~~sp~pGT~~ 342 (437)
T PRK14331 330 FSFKYSPRPGTPA 342 (437)
T ss_pred eeeEecCCCCcch
Confidence 5557788766543
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-07 Score=83.39 Aligned_cols=131 Identities=18% Similarity=0.330 Sum_probs=110.1
Q ss_pred CCEEEEcCCccCccc-c-HHHHHHHHhccCC-----CCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhh
Q 022377 32 VDKIRLTGGEPTVRK-D-IEEACFHLSKLKG-----LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFL 103 (298)
Q Consensus 32 ~~~v~~tGGEPll~~-~-~~~ii~~~~~~~~-----~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~i 103 (298)
+..|.|.||.|.+-. + +..+++.+++..+ . .++|..|...+ .+.+..++++|+.+|++-+.+++++.-..+
T Consensus 88 v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~-EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~l 166 (416)
T COG0635 88 VKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDA-EITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKAL 166 (416)
T ss_pred EEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCc-eEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHh
Confidence 568889999999864 3 6688888876432 5 59999998877 679999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeec
Q 022377 104 TRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMP 163 (298)
Q Consensus 104 r~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p 163 (298)
.+..+.+.+.+++..+++.|+..+.+-..+ .|+++.+++.+.++.+.+++. ++....+.-
T Consensus 167 gR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~ 228 (416)
T COG0635 167 GRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAI 228 (416)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeec
Confidence 999999999999999999999667666544 378899999999999999988 466655543
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.3e-07 Score=82.74 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=123.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-cc-HHHHHHHHhccC---C-CCcEEEEeCccch-HhhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KD-IEEACFHLSKLK---G-LKTLAMTTNGLTL-ARKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~-~~~ii~~~~~~~---~-~~~v~i~TNG~ll-~~~~~~l~~~ 83 (298)
+..|+.|++.+-+..+.+.|+..+.+.+|| |.-. .+ +.++++.+++.. + +. .+..|.-.+ .+.+++|+++
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~--~v~inig~lt~eey~~Lkea 189 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIR--RVNVNIAPTTVENYKKLKEA 189 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcce--eeEEEeecCCHHHHHHHHHc
Confidence 356999999999999999999999998777 4322 23 457777777621 2 22 344454344 6799999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhC----CC--
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDR----PI-- 154 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~----g~-- 154 (298)
|++.+.+-..+.++++|..+... .+|+..+++++.+.++|+..|.+...+.-+....|..+++..+..+ |+
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp 269 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGP 269 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999988643 3599999999999999993388877666555555655555555444 43
Q ss_pred e-eEEEeeecCCCCCCccc-CCCCHHHHHHHHH
Q 022377 155 N-IRFIEFMPFDGNVWNVK-KLVPYAEMLDTVV 185 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~~~~~-~~~~~~e~~~~i~ 185 (298)
+ +++..+.|..++++... ..++.++++..+.
T Consensus 270 ~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA 302 (469)
T PRK09613 270 HTISVPRLRPADGSDLENFPYLVSDEDFKKIVA 302 (469)
T ss_pred ccccccceecCCCCCcccCCCCCCHHHHHHHHH
Confidence 2 56667888877666332 3467666655543
|
|
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-06 Score=80.67 Aligned_cols=159 Identities=11% Similarity=0.255 Sum_probs=122.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+-...+++++.+-++.+.+.|++.|.|+|.+...+ ..+.++++.+.+..++..+.+.+ +...+ ++.++.++
T Consensus 163 ~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~ 242 (414)
T TIGR01579 163 RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIA 242 (414)
T ss_pred CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHH
Confidence 44668899998888888888999999988665544 24778988887754553355532 33334 56778887
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH--cCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE--VGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~--~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ ...+.+.+++.+++..+.+++..+.+.+.+.++.+++ .|+ .+...++ -.||++.+++.+.++++.+++.+
T Consensus 243 ~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi-~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 321 (414)
T TIGR01579 243 SEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDY-AFGTDIIVGFPGESEEDFQETLRMVKEIEFSH 321 (414)
T ss_pred hcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eeeeeEEEECCCCCHHHHHHHHHHHHhCCCCE
Confidence 766 6789999999999999999887889999999999999 777 6666553 44889999999999999998874
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 322 ~~~~~~sp~pGT~~~ 336 (414)
T TIGR01579 322 LHIFPYSARPGTPAS 336 (414)
T ss_pred EEeeecCCCCCCchh
Confidence 566778887766543
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=83.38 Aligned_cols=135 Identities=18% Similarity=0.267 Sum_probs=110.4
Q ss_pred EEEEc-CCccCccccHHHHHHHHhccC---CCCcEE-EEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc
Q 022377 34 KIRLT-GGEPTVRKDIEEACFHLSKLK---GLKTLA-MTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG 108 (298)
Q Consensus 34 ~v~~t-GGEPll~~~~~~ii~~~~~~~---~~~~v~-i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~ 108 (298)
.+..+ ||+++.+|++.+.+++++... .+. ++ +..||..++...+.+.++|++.|+||+++.+++.-.++.+...
T Consensus 81 ~~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~r-L~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~ 159 (414)
T COG1625 81 GAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIR-LSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPN 159 (414)
T ss_pred ceeecCCCCcccCcchhhhhhHHHhhcCCccce-eeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCc
Confidence 45555 799999999999999998852 142 44 4456655677888899999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEecCCC-HhHHHHHHHHHhhCCCe-eEEEeeecCCCCCCc
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVMRGFN-DDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 170 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~~~ 170 (298)
-...++.++.+.+.++ .+..++|+.||.| -++++++++-+.++|.+ +..+.+.|+|-+..+
T Consensus 160 A~~~le~L~~f~~~~~-~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n 222 (414)
T COG1625 160 AEQLLELLRRFAERCI-EVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYN 222 (414)
T ss_pred HHHHHHHHHHHHHhhh-heeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecC
Confidence 7779999999999999 8999999999999 68899999999999884 344446688755443
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-07 Score=75.78 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccH-HHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~-~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
++..+.+.++++|++.++++.+.+.|...|.|-||||+-+..+ .+.++++.+ .+. +.-+||++...+.++.|.. -
T Consensus 140 ISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~Ile~l~~~~~--~iP-vvwNSnmY~s~E~l~lL~g-v 215 (335)
T COG1313 140 ISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHLPFILEALRYASE--NIP-VVWNSNMYMSEETLKLLDG-V 215 (335)
T ss_pred ccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCchHHHHHHHHHHhc--CCC-EEEecCCccCHHHHHHhhc-c
Confidence 3445578899999999999999999999999999999998764 599999877 475 8899999877666665543 3
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCc-HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhH-HHHHHHHHhhC-CCeeEEE--
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE-ICDFVELTRDR-PINIRFI-- 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~-i~~i~~~~~~~-g~~~~~~-- 159 (298)
+|..-=.+.-.+++--.+..+.++ |+-+.+|+..+.+..- .+-|+..++|| +.+. -..+++|+.++ |-++..+
T Consensus 216 VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPg-hlecCTkpI~~wiae~~g~~~~vNiM 293 (335)
T COG1313 216 VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPG-HLECCTKPILRWIAENLGNDVRVNIM 293 (335)
T ss_pred ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCC-chhhccHHHHHHHHHhCCCCeeEEeh
Confidence 553334455556665555556555 8999999999988754 57899999997 5554 78899998874 4333221
Q ss_pred -eeecCCCCCCcc--cCCCCHHHHHHHH
Q 022377 160 -EFMPFDGNVWNV--KKLVPYAEMLDTV 184 (298)
Q Consensus 160 -~~~p~~~~~~~~--~~~~~~~e~~~~i 184 (298)
+|.|.......+ ...++.+|+.+.+
T Consensus 294 ~QY~P~ykA~eypeI~R~lt~eE~e~a~ 321 (335)
T COG1313 294 FQYRPEYKAEEYPEINRRLTREEYEKAL 321 (335)
T ss_pred hhccchhhhhhchhhcccCCHHHHHHHH
Confidence 445544321111 2345666665544
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-06 Score=80.48 Aligned_cols=159 Identities=13% Similarity=0.223 Sum_probs=120.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------CccCcc-ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTVR-KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------GEPll~-~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+-...+.+++.+-++.+.+.|++.|.|+| |+++-. ..+.++++.+.+..++..+.+.+ +...+ ++.++.+.
T Consensus 164 ~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~ 243 (429)
T TIGR00089 164 RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIA 243 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHH
Confidence 44567889988888888888999999987 444332 35778988887754554455544 44444 56788888
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC--CCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-e
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
+++ +..+.+++++.+++..+.+++..+.+.+.+.++.+++.+ + .+...++ -.||++.+++.+.++++.++++ .
T Consensus 244 ~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i-~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 322 (429)
T TIGR00089 244 ENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDA-AITTDIIVGFPGETEEDFEETLDLVEEVKFDK 322 (429)
T ss_pred hCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEEeeEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 874 889999999999999998888778999999999999988 5 4544443 3488999999999999999887 4
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 323 ~~~~~~sp~pgT~~~ 337 (429)
T TIGR00089 323 LHSFIYSPRPGTPAA 337 (429)
T ss_pred eeccccCCCCCCchh
Confidence 566677787665543
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=76.73 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc----cCcc-ccHHHHHHHHhcc-CCCCcEEEEeC-ccchHhhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTVR-KDIEEACFHLSKL-KGLKTLAMTTN-GLTLARKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE----Pll~-~~~~~ii~~~~~~-~~~~~v~i~TN-G~ll~~~~~~l~~~~~ 85 (298)
..++.+++.+.++++...|++.|.|+||+ |-.. ..+.++++.+++. .++. +.+.|. .....+.+..++++|.
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~ir-I~~l~~~~~~~~e~L~~l~~ag~ 156 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTT-IEVLIPDFRGRMDALLTVLDARP 156 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcE-EEEEccCCCCCHHHHHHHHhcCc
Confidence 56999999999999999999999999987 3222 2477999988873 4563 666554 3223578888999998
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeee
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFM 162 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~ 162 (298)
..+..-+.+ .++.++.+++..+++..++.++.+++. |+ .+...+++.-|++.+++.+.++++.+++++ +....|.
T Consensus 157 ~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi-~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys 234 (289)
T PRK05481 157 DVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGI-PTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYL 234 (289)
T ss_pred ceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 877766666 477888888877899999999999999 88 777666655588999999999999999985 4444666
Q ss_pred c
Q 022377 163 P 163 (298)
Q Consensus 163 p 163 (298)
|
T Consensus 235 ~ 235 (289)
T PRK05481 235 Q 235 (289)
T ss_pred C
Confidence 6
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-06 Score=78.02 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=109.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCc-ccc-HHHHHHHHhccC-CCCcEEEEeCc----------cchHhhHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV-RKD-IEEACFHLSKLK-GLKTLAMTTNG----------LTLARKLP 78 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll-~~~-~~~ii~~~~~~~-~~~~v~i~TNG----------~ll~~~~~ 78 (298)
...|+.|++.+.++++.+.|...|.++||++.- ..+ +.++++.+++.. .+. +.-.|-+ ...++.++
T Consensus 70 ~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~-~~a~s~~ei~~~a~~~~~~~~e~L~ 148 (348)
T PRK08445 70 AYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTIT-IHGFSAVEIDYIAKISKISIKEVLE 148 (348)
T ss_pred CeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcE-EEEccHHHHHHHHHHhCCCHHHHHH
Confidence 346899999999999999999999999887654 444 569999998842 242 3212222 12368899
Q ss_pred HHHHcCCCeEE-EecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 79 KLKESGLTSVN-ISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 79 ~l~~~~~~~v~-iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+|+++|++.+. +.+...++++.+.+.+ ..+.+.-++.++.++++|+ ++...+++..+++.++..+.+..++++..
T Consensus 149 ~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi-~~~sg~i~G~~Et~edr~~~l~~lreLq~ 225 (348)
T PRK08445 149 RLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGM-KSTATMMFGTVENDEEIIEHWERIRDLQD 225 (348)
T ss_pred HHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-eeeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999885 8899888888888854 4457777999999999999 88877777777888888888888888765
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-06 Score=78.17 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=121.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc----cHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHHHc
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK----DIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLKES 83 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~----~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~~~ 83 (298)
++-...++|++.+-++.+.+.|++.|.|+|..-..+. ++.++++.+.+..++..+.+.+ +...+ ++.++.++++
T Consensus 178 G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 257 (449)
T PRK14332 178 GRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKN 257 (449)
T ss_pred CCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhC
Confidence 3456788999999899888899999999987776653 3677877776543443355543 43334 5567888887
Q ss_pred C--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCCCe-eE
Q 022377 84 G--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRPIN-IR 157 (298)
Q Consensus 84 ~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g~~-~~ 157 (298)
+ +..+.+.+++.+++..+.+++..+.+...+.++.++++.- .+.+.+ +-.||++.+++.+.++++.+++++ +.
T Consensus 258 ~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p-~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~ 336 (449)
T PRK14332 258 PRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP-DVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAF 336 (449)
T ss_pred CCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 7 7899999999999999999887889999999999999732 334333 333889999999999999999985 46
Q ss_pred EEeeecCCCCCC
Q 022377 158 FIEFMPFDGNVW 169 (298)
Q Consensus 158 ~~~~~p~~~~~~ 169 (298)
...|.|..++..
T Consensus 337 ~f~ys~~~GT~a 348 (449)
T PRK14332 337 MFKYSEREGTMA 348 (449)
T ss_pred EEEecCCCCChh
Confidence 667888776644
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-06 Score=78.39 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=120.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc---------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPK 79 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~---------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~ 79 (298)
+....+.+++.+-++.+.+.|++.|.|+|.....+ ..+.++++.+.+..++..+.+. .+...+ ++.++.
T Consensus 170 ~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~ 249 (438)
T TIGR01574 170 DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEV 249 (438)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHH
Confidence 34578899999888888889999999988655544 2477888888754455434443 244444 567888
Q ss_pred HHHcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC
Q 022377 80 LKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 80 l~~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+.+++ +..+.+++++.+++.-+.+++..+.+..++.++.+++. ++ .+...+ +-.||++.+++.+.++++.+.+.
T Consensus 250 l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i-~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~ 328 (438)
T TIGR01574 250 FANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNV-SISTDIIVGFPGETEEDFEETLDLLREVEF 328 (438)
T ss_pred HHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEeeCEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 88887 88999999999999998888877899999999999987 44 444333 34488999999999999999887
Q ss_pred -eeEEEeeecCCCCCCc
Q 022377 155 -NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 155 -~~~~~~~~p~~~~~~~ 170 (298)
.+....|.|..++...
T Consensus 329 ~~~~~~~~sp~pGT~~~ 345 (438)
T TIGR01574 329 DSAFSFIYSPRPGTPAA 345 (438)
T ss_pred CeeeeEEecCCCCCchh
Confidence 4555677787666543
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.7e-06 Score=77.43 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=117.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc----------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR----------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~----------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~ 79 (298)
....++|++.+-++.+.+.|++.|.|+|..-..+ ..+.++++.+.+..++..+.+. ++...+ ++.++.
T Consensus 153 ~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~ 232 (420)
T PRK14339 153 EISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEE 232 (420)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHH
Confidence 3456889988888888888999999988664432 2477888888764455335553 454445 567788
Q ss_pred HHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC
Q 022377 80 LKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 80 l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+.++ +...+.|.+++.+++.-+.++++.+.+..++.++.+++. ++ .+...+ +-.||++.+++++.++|+.+.+.
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i-~i~~d~IvGfPgETeedf~~Tl~fl~~l~~ 311 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEV-SISTDIIVGFPGESDKDFEDTMDVLEKVRF 311 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 8776 478999999999999999998888899999999999997 44 444443 33488999999999999999887
Q ss_pred e-eEEEeeecCCCCC
Q 022377 155 N-IRFIEFMPFDGNV 168 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~ 168 (298)
+ +....|.|..+++
T Consensus 312 ~~~~~f~~sp~pGT~ 326 (420)
T PRK14339 312 EQIFSFKYSPRPLTE 326 (420)
T ss_pred CEEeeEecCCCCCCc
Confidence 5 5556788877665
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.2e-06 Score=77.08 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=121.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+....++|++.+=++.+.+.|++.|.|+|..-..+ +.+.++++.+.+..++..+.+.+ +...+ ++.++.+.
T Consensus 149 ~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~ 228 (418)
T PRK14336 149 REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMA 228 (418)
T ss_pred CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHH
Confidence 44678899988888888888999999998776542 24778888887654543355543 34334 56777777
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVV-MRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+. ++..+.+.+++.+++..+.+++..+.+..++.++.++++ |+ .+...+++ .||++.+++.+.++++.+.+.+
T Consensus 229 ~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi-~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~ 307 (418)
T PRK14336 229 HLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDI-SLQTDLIVGFPSETEEQFNQSYKLMADIGYDA 307 (418)
T ss_pred hcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 74 478999999999999999998877899999999999998 77 66655544 4889999999999999998874
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+....|.|..++..
T Consensus 308 ~~v~~ysp~pGT~a 321 (418)
T PRK14336 308 IHVAAYSPRPQTVA 321 (418)
T ss_pred EEeeecCCCCCChh
Confidence 45667778766544
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=78.93 Aligned_cols=171 Identities=19% Similarity=0.272 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccC-CCCcE----------EEEeCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-GLKTL----------AMTTNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~-~~~~v----------~i~TNG~ll~~~~~~ 79 (298)
..|+.|++.+.++++.+.|+..+.|+||+ |-.-.+ +.++++.+++.. ++. + ...+.|.+..+.+++
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~-~~~~s~~ei~~~~~~~G~~~~e~l~~ 152 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLH-PHFFSAVEIAHAAQVSGISTEQALER 152 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCc-ccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 47999999999999999999999999999 444444 448888888742 342 2 133578788899999
Q ss_pred HHHcCCCeEEE-ecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVNI-SLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~i-Sldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+.= .+...++...+.+...+ +.+.-++.++.+++.|+ ++...+++.-|++.++..+.+..++++.-. -
T Consensus 153 Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi-~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~ 231 (350)
T PRK05927 153 LWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGF-RSTATMMFGHVESPEDILLHLQTLRDAQDENP 231 (350)
T ss_pred HHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCC-CcCceeEEeeCCCHHHHHHHHHHHHHhhHhhC
Confidence 99999984442 44444555555555544 46999999999999999 887777776688988877777777775531 1
Q ss_pred EEEeeecC----CCCCCccc--CCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNVWNVK--KLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~~~~~--~~~~~~e~~~~i~ 185 (298)
.|..|+|. ..+..... ...+..+.++.++
T Consensus 232 gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iA 266 (350)
T PRK05927 232 GFYSFIPWSYKPGNTALGRRVPHQASPELYYRILA 266 (350)
T ss_pred CeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHH
Confidence 34455553 22222211 1467777766554
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-06 Score=76.76 Aligned_cols=158 Identities=12% Similarity=0.196 Sum_probs=120.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc---------cHHHHHHHHhc----cCCCCcEE-EEeCccch-Hhh
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK---------DIEEACFHLSK----LKGLKTLA-MTTNGLTL-ARK 76 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~---------~~~~ii~~~~~----~~~~~~v~-i~TNG~ll-~~~ 76 (298)
....+++++.+-++.+.+.|++.|.|+|.....+. .+.++++.+.+ ..++..+. .+++...+ ++.
T Consensus 178 ~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~el 257 (455)
T PRK14335 178 EISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDL 257 (455)
T ss_pred CccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHH
Confidence 34678999888888888889999999887665431 36677777631 12443344 34566555 567
Q ss_pred HHHHHH--cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEE-ecCCCHhHHHHHHHHHhh
Q 022377 77 LPKLKE--SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVV-MRGFNDDEICDFVELTRD 151 (298)
Q Consensus 77 ~~~l~~--~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~ 151 (298)
++.+.+ .++..+.+.+.+.+++.-+.+++..+.+.+.+.++.+++. |+ .+...+++ .||++.+++++.++++.+
T Consensus 258 l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~d~IvGfPgET~edf~~Tl~~i~~ 336 (455)
T PRK14335 258 IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNV-ALSTDILIGFPGETEEDFEQTLDLMRE 336 (455)
T ss_pred HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 787877 4789999999999999998888877899999999999998 77 66655544 488999999999999999
Q ss_pred CCC-eeEEEeeecCCCCCCc
Q 022377 152 RPI-NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g~-~~~~~~~~p~~~~~~~ 170 (298)
++. .+.+..|.|..++...
T Consensus 337 l~~~~~~~~~~sp~pGT~~~ 356 (455)
T PRK14335 337 VEFDSAFMYHYNPREGTPAY 356 (455)
T ss_pred cCCCeEEEEEecCCCCCchh
Confidence 887 4566778888776543
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-06 Score=77.11 Aligned_cols=159 Identities=10% Similarity=0.174 Sum_probs=119.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~l~ 81 (298)
+....+++++.+-++.+.+.|++.|.|+|..-+.+ .++.++++.+.+..++..+.+. ++...+ ++.++.+.
T Consensus 172 ~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~ 251 (439)
T PRK14328 172 RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIA 251 (439)
T ss_pred CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHH
Confidence 44667899998888888888999999998775542 3477888888764454335543 355444 56788888
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ +..+.+.+++.+++.-+.+++..+.+.+++.++.+++. ++ .+...+ +-.||++.+++.+.++++.+++.+
T Consensus 252 ~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~ 330 (439)
T PRK14328 252 DCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDV-AITTDIIVGFPGETEEDFEETLDLVKEVRYDS 330 (439)
T ss_pred hCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCc
Confidence 775 78999999999999998888877899999999999987 44 344444 334889999999999999998874
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 331 ~~~~~~sp~pGT~~~ 345 (439)
T PRK14328 331 AFTFIYSKRKGTPAA 345 (439)
T ss_pred ccceEecCCCCChhh
Confidence 556677787665543
|
|
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-06 Score=77.58 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=117.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc---------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~---------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
...+++++.+=++.+.+.|++.|.|+|-.-..+ ..+.++++.+.+..++..+.+.+ +...+ ++.++.+.
T Consensus 174 ~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~ 253 (444)
T PRK14325 174 VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYA 253 (444)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHH
Confidence 467889988888888888999998876543332 14678888877654543355543 44445 56778887
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ +..+.+++++.+++.-+.+++..+.+.+.+.++.++++ |+ .+...+ +-.||++.+++.+.++++.+++.+
T Consensus 254 ~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi-~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 332 (444)
T PRK14325 254 DLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDI-AISSDFIVGFPGETDEDFEATMKLIEDVGFDQ 332 (444)
T ss_pred cCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEEeeEEEECCCCCHHHHHHHHHHHHhcCCCe
Confidence 764 78999999999999998888877899999999999998 55 454444 344889999999999999998874
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 333 ~~~~~~sp~pGT~~~ 347 (444)
T PRK14325 333 SFSFIYSPRPGTPAA 347 (444)
T ss_pred eeeeeccCCCCCchh
Confidence 455677787766543
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-06 Score=77.78 Aligned_cols=173 Identities=15% Similarity=0.126 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCEE--EEcCCccCcccc--HHHHHHHHhccC--------------------------C
Q 022377 13 QLLSLNEILRLAYLFVTSG--VDKI--RLTGGEPTVRKD--IEEACFHLSKLK--------------------------G 60 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~--~~~v--~~tGGEPll~~~--~~~ii~~~~~~~--------------------------~ 60 (298)
..-+.+++..-++++...| +..| .|.||.++..|. ...+++.+.+.. .
T Consensus 113 ~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~ 192 (522)
T TIGR01211 113 DYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRC 192 (522)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCe
Confidence 3467788888888888866 4344 788999999875 334554443311 1
Q ss_pred CCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCC
Q 022377 61 LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFN 138 (298)
Q Consensus 61 ~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n 138 (298)
+ .+++.|+.-.+ ++.++.|+++|+..|.+.+++.++++.+.+.++.+.+.++++++.++++|+ .+.+.+++. ||++
T Consensus 193 v-gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~-~v~~~LM~GLPgqt 270 (522)
T TIGR01211 193 V-GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGL-KVVYHIMPGLPGSS 270 (522)
T ss_pred E-EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eEEEEeecCCCCCC
Confidence 3 36788888777 678999999999999999999999999999988899999999999999999 777766544 6677
Q ss_pred HhHHHHHHHHHhh---CCC-eeEEEeeecCCCCC----Cccc--CCCCHHHHHHHHHHh
Q 022377 139 DDEICDFVELTRD---RPI-NIRFIEFMPFDGNV----WNVK--KLVPYAEMLDTVVKK 187 (298)
Q Consensus 139 ~~~i~~i~~~~~~---~g~-~~~~~~~~p~~~~~----~~~~--~~~~~~e~~~~i~~~ 187 (298)
.+...+.++.+.+ ++. .+++..+.+..++. |... ...+.++.++.+...
T Consensus 271 ~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~ 329 (522)
T TIGR01211 271 FERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEI 329 (522)
T ss_pred HHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7776666666653 555 35555555444332 2111 234566665555443
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.8e-06 Score=75.78 Aligned_cols=157 Identities=11% Similarity=0.138 Sum_probs=119.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc------ccHHHHHHHHhccC-CCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------KDIEEACFHLSKLK-GLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~------~~~~~ii~~~~~~~-~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+-...+.|++.+=++.+.+.|++.|.|+|.....+ .++.++++.+.+.. +. ++.+.+ +...+ ++.++.+.
T Consensus 174 ~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~~-rir~~~~~p~~l~~ell~~~~ 252 (445)
T PRK14340 174 RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPEM-RIRFTTSHPKDISESLVRTIA 252 (445)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCCc-EEEEccCChhhcCHHHHHHHH
Confidence 44667888888888888888999999988665543 34678888776532 33 355543 33334 56778887
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
++ ++..+.+.+.+.+++.-+.+++..+.+.+.+.++.+++. |+ .+...+ +-.||++.+++++.++++.+.+.+
T Consensus 253 ~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi-~i~td~IvGfPgET~edf~~tl~~~~~~~~~~ 331 (445)
T PRK14340 253 ARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGV-TLSTDLIAGFCGETEEDHRATLSLMEEVRFDS 331 (445)
T ss_pred hCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEeccEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 75 689999999999999998888877899999999999998 77 665554 444899999999999999998874
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+..|.|..++..
T Consensus 332 ~~~f~~sp~pGT~~ 345 (445)
T PRK14340 332 AFMFYYSVRPGTLA 345 (445)
T ss_pred EeeEEecCCCCChh
Confidence 45567888776653
|
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=75.86 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHhCC-CCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccc-----hHh-hHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLT-----LAR-KLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~l-----l~~-~~~~l~~~~ 84 (298)
.++.+++.+.++-+.+.. +..|.||||+||+-.+ +..|++.+++...++.+.|-|-.-. +++ .++.|.+.+
T Consensus 140 ~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~ 219 (369)
T COG1509 140 GFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSR 219 (369)
T ss_pred cCCHHHHHHHHHHHHcCchhheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccC
Confidence 379999999999998864 7899999999999876 7799999998755555555555443 323 344444423
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCe
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPIN 155 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~ 155 (298)
..|.+..+-..+. .++ ..+.+++++|+++|+ .+.-++|+.+|.|++ -+.++.+-+...|+.
T Consensus 220 -~~v~~~tH~NHp~---Eit-----~e~~~A~~~L~~aGv-~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~ 282 (369)
T COG1509 220 -KPVWLVTHFNHPN---EIT-----PEAREACAKLRDAGV-PLLNQSVLLRGVNDDPEVLKELSRALFDAGVK 282 (369)
T ss_pred -ceEEEEcccCChh---hcC-----HHHHHHHHHHHHcCc-eeecchheecccCCCHHHHHHHHHHHHHcCCc
Confidence 3355555443332 222 367889999999999 888899999999974 367777777777874
|
|
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=74.35 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=117.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-----ccHHHHHHHHhccCCCCcEEEEe-Ccc----chHhhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----KDIEEACFHLSKLKGLKTLAMTT-NGL----TLARKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-----~~~~~ii~~~~~~~~~~~v~i~T-NG~----ll~~~~~~l 80 (298)
+-...++|++.+-++.+.+.|++.|.|+|.+-..+ ..+.++++.+.+..+...+.+.+ +.. ..++.++.+
T Consensus 158 ~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~ 237 (420)
T TIGR01578 158 KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVY 237 (420)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHH
Confidence 34567889988888888888999999998654432 24677887776543322244432 221 123445555
Q ss_pred HHcC-CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-e
Q 022377 81 KESG-LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 81 ~~~~-~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
...+ ...+.+++++.+++..+.+++..+.+...+.++.+++. |+ .+...++ -.||++.+++.+.++++.+++. .
T Consensus 238 ~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i-~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~ 316 (420)
T TIGR01578 238 QHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDL-TLSTDIIVGFPTETDDDFEETMELLRKYRPEK 316 (420)
T ss_pred hcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCE
Confidence 4434 57899999999999998888877889999999999998 66 5555544 4488999999999999999887 4
Q ss_pred eEEEeeecCCCCCCcccCCCC
Q 022377 156 IRFIEFMPFDGNVWNVKKLVP 176 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~ 176 (298)
+.+..|.|..++........+
T Consensus 317 i~~~~~~p~pGT~~~~~~~v~ 337 (420)
T TIGR01578 317 INITKFSPRPGTPAAKMKRIP 337 (420)
T ss_pred EEEEEeeCCCCCcccCCCCCC
Confidence 677788888776544333344
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=75.12 Aligned_cols=157 Identities=14% Similarity=0.203 Sum_probs=118.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc--------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~--------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l 80 (298)
+....++|++.+-++.+.+.|++.|.|+|..-..+ ..+.++++.+.+. ++..+.++| +...+ ++.++.+
T Consensus 237 ~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~-~i~~ir~~s~~P~~i~deli~~m 315 (509)
T PRK14327 237 KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKI-DIPRVRFTTSHPRDFDDHLIEVL 315 (509)
T ss_pred CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhC-CCceEEEeecCcccCCHHHHHHH
Confidence 44678899999888888888999999987443221 2467888888774 554466554 44344 5678888
Q ss_pred HHcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--E-EEecCCCHhHHHHHHHHHhhCCCe
Q 022377 81 KESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--C-VVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 81 ~~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~-vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+++ +..+.+.+++.+++.-+.+++..+.+..++.++.++++.. .+.+. + +-.||++.+++.+.++++.+.+.+
T Consensus 316 ~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p-~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d 394 (509)
T PRK14327 316 AKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP-NVALTTDIIVGFPNETDEQFEETLSLYREVGFD 394 (509)
T ss_pred HhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 8887 5689999999999999888887889999999999999843 44443 3 345889999999999999998874
Q ss_pred -eEEEeeecCCCCCC
Q 022377 156 -IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 -~~~~~~~p~~~~~~ 169 (298)
+....|.|..++..
T Consensus 395 ~~~~f~ysprpGT~a 409 (509)
T PRK14327 395 HAYTFIYSPREGTPA 409 (509)
T ss_pred eEEEeeeeCCCCCch
Confidence 44556778766654
|
|
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-05 Score=74.68 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=105.4
Q ss_pred HHHHHHHHHh---C--CCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEec
Q 022377 20 ILRLAYLFVT---S--GVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 20 ~~~~i~~~~~---~--~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSl 92 (298)
+..+++++.. . .+..|.|.||-|++.++ +.++++.+++..++..+++.+|...+ ++.++.+.+. +++++|.+
T Consensus 85 ~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l~~~L~~ll~~i~~~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGV 163 (433)
T PRK08629 85 FISLRKEMEMVKELGYDFESMYVGGGTTTILEDELAKTLELAKKLFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGV 163 (433)
T ss_pred HHHHHHHHHHHHhcCCceEEEEECCCccccCHHHHHHHHHHHHHhCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEec
Confidence 4445554432 2 35688899999998765 66888888876566569999998877 5688999888 99999999
Q ss_pred CCCCHHhhhhhcCCCcHHHH---HHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 93 DTLVPAKFEFLTRRKGHEKV---MESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v---~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
.+.++++-+.+.+..++..+ ++.++.+++... .+.+..+ -.||++.+++.+.++++.+++. .+.+..+++...
T Consensus 164 QS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~ 241 (433)
T PRK08629 164 QSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFP-IINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQ 241 (433)
T ss_pred CcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCC-eEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccC
Confidence 99999998888776665444 555555444423 4555543 3388899999999999999887 466665554433
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=76.95 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=112.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-Ccccc-HHHHHHHHhcc-CCCCcEEEEeC----------ccchHhhHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVRKD-IEEACFHLSKL-KGLKTLAMTTN----------GLTLARKLP 78 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-ll~~~-~~~ii~~~~~~-~~~~~v~i~TN----------G~ll~~~~~ 78 (298)
...|+.|++.+.++++ +.|+..+.+.||+. -+..+ +.++++.+++. .++. +.-.|- +....+.++
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~-i~a~s~~Ei~~~~~~~~~~~~e~l~ 173 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLH-IKALTAIEYAYLSKLDNLPVKEVLQ 173 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCee-EEECCHHHHHHHHhhcCCCHHHHHH
Confidence 3469999999999988 68999999999884 33333 55888888874 2453 433332 223467799
Q ss_pred HHHHcCCCeEEE-ecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 79 KLKESGLTSVNI-SLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 79 ~l~~~~~~~v~i-Sldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
.|+++|++.+.. ..+..+++..+.+... .+.+.-++.++.++++|+ ++...+++..|++.++..+.+..+++++.+
T Consensus 174 ~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi-~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t 252 (370)
T PRK05926 174 TLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGI-PSNATMLCYHRETPEDIVTHMSKLRALQDKT 252 (370)
T ss_pred HHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-cccCceEEeCCCCHHHHHHHHHHHHhcCCcc
Confidence 999999997664 3555566666666543 358889999999999999 888888887889999999999999998873
Q ss_pred eEEEeeec
Q 022377 156 IRFIEFMP 163 (298)
Q Consensus 156 ~~~~~~~p 163 (298)
.-|..|+|
T Consensus 253 ~gf~~fIp 260 (370)
T PRK05926 253 SGFKNFIL 260 (370)
T ss_pred CCeeeeEe
Confidence 45666666
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-05 Score=73.24 Aligned_cols=158 Identities=13% Similarity=0.208 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc------Ccc-ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP------TVR-KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP------ll~-~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~l~~ 82 (298)
....+++++.+=++.+.+.|++.|.|+|..- +-. ..+.++++.+.+..++..+.+. ++...+ ++.++.+.+
T Consensus 166 ~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~ 245 (434)
T PRK14330 166 EKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIAN 245 (434)
T ss_pred CccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhc
Confidence 4567888888888888888999999976432 222 3477888877654455433332 343344 567777777
Q ss_pred cC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 83 SG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 83 ~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
++ ...+.|.+++.+++.-+.+++..+.+...+.++.+++. ++ .+...+ +-.||++.+++.+.++++.+.+++ +
T Consensus 246 ~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~ 324 (434)
T PRK14330 246 SPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDA-SISSDIIVGFPTETEEDFMETVDLVEKAQFERL 324 (434)
T ss_pred CCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 76 67899999999999998888877899999999999997 44 454444 334889999999999999999884 5
Q ss_pred EEEeeecCCCCCCc
Q 022377 157 RFIEFMPFDGNVWN 170 (298)
Q Consensus 157 ~~~~~~p~~~~~~~ 170 (298)
.+..|.|..+++..
T Consensus 325 ~~~~~sp~pGT~~~ 338 (434)
T PRK14330 325 NLAIYSPREGTVAW 338 (434)
T ss_pred eeeeccCCCCChhh
Confidence 66778887776543
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-05 Score=73.83 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=116.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------------CccCc--cccHHHHHHHHhccCCCCcEEEE-eCccch-H
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------------GEPTV--RKDIEEACFHLSKLKGLKTLAMT-TNGLTL-A 74 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------------GEPll--~~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~ 74 (298)
+....+++++.+=++.+.+.|++.|.|+| +.|.. ...+.++++.+.+..++.++.+. ++...+ +
T Consensus 173 ~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~ 252 (448)
T PRK14333 173 KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTE 252 (448)
T ss_pred CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhH
Confidence 34467888888777777778888888865 22332 12578888888775565445553 344445 4
Q ss_pred hhHHHHHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEE-EecCCCHhHHHHHHHHH
Q 022377 75 RKLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCV-VMRGFNDDEICDFVELT 149 (298)
Q Consensus 75 ~~~~~l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~v-i~~~~n~~~i~~i~~~~ 149 (298)
+.++.+.+. ++..+.|.+++.+++.-+.+++..+.+...+.++.++++ ++ .+...++ -.||++.+++++.++++
T Consensus 253 eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i-~i~~d~IvGfPgET~edf~~tl~~l 331 (448)
T PRK14333 253 RLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDA-SISADAIVGFPGETEAQFENTLKLV 331 (448)
T ss_pred HHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCc-EEEeeEEEECCCCCHHHHHHHHHHH
Confidence 566777664 478899999999999999988888899999999999998 44 4444443 33889999999999999
Q ss_pred hhCCCe-eEEEeeecCCCCCC
Q 022377 150 RDRPIN-IRFIEFMPFDGNVW 169 (298)
Q Consensus 150 ~~~g~~-~~~~~~~p~~~~~~ 169 (298)
.+++.+ +.+..|.|..++..
T Consensus 332 ~~~~~~~~~~~~~sp~pGT~~ 352 (448)
T PRK14333 332 EEIGFDQLNTAAYSPRPGTPA 352 (448)
T ss_pred HHcCCCEEeeeeeecCCCCch
Confidence 999884 66677888766653
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.1e-05 Score=72.70 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=117.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------cc-ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VR-KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~-~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+....++|++.+=++.+.+.|+..|.|+|-.=. -. ..+.++++.+.+..++..+.+++ +...+ ++.++.+.
T Consensus 182 ~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~ 261 (502)
T PRK14326 182 KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMA 261 (502)
T ss_pred CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHH
Confidence 446788899888888888889999988764332 22 24667777776544543355543 33334 56788888
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVV-MRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ ...+.+.+++.+++.-+.++++.+.+.+.+.++.+++. ++ .+...+++ .||++.+++.+.++++.+++++
T Consensus 262 ~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i-~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~ 340 (502)
T PRK14326 262 ETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDA-AITTDIIVGFPGETEEDFQATLDVVREARFSS 340 (502)
T ss_pred hcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEEEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 876 78899999999999999998888899999999999996 45 45554433 3889999999999999998875
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.++.|.|..++...
T Consensus 341 ~~~f~~sp~pGT~~~ 355 (502)
T PRK14326 341 AFTFQYSKRPGTPAA 355 (502)
T ss_pred EEEEeecCCCCChHH
Confidence 455567887766543
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-05 Score=71.01 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=116.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc--------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPK 79 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~--------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~ 79 (298)
++-...+++++.+=++.+.+.|++.|.|+|..-..+ ..+.++++.+.+..++..+.+. .+...+ ++.++.
T Consensus 172 G~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~ 251 (446)
T PRK14337 172 GRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEA 251 (446)
T ss_pred CCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHH
Confidence 344678899988888888888999999988543221 2477888877764454335553 344334 567777
Q ss_pred HHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC
Q 022377 80 LKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 80 l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+.+. ++..+.+.+++.+++.-+.+++..+.+...+.++.+++. ++ .+...+ +-.||++.+++.+.++++.++++
T Consensus 252 l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i-~i~~d~IvG~PgET~ed~~~tl~~l~~~~~ 330 (446)
T PRK14337 252 FGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDI-ALTTDLIVGFPGETEEDFEQTLEAMRTVGF 330 (446)
T ss_pred HHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 8773 478999999999999998888877899999999999998 34 444443 33388999999999999999988
Q ss_pred e-eEEEeeecCCCCC
Q 022377 155 N-IRFIEFMPFDGNV 168 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~ 168 (298)
+ +..+.|.|..++.
T Consensus 331 ~~~~~f~ysp~pgT~ 345 (446)
T PRK14337 331 ASSFSFCYSDRPGTR 345 (446)
T ss_pred CeeEEEecCCCCCCc
Confidence 5 3445677776554
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-05 Score=71.82 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=107.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCccccHH-HHHHHHhc-cCCCCcEEEEeCc--------c--chHhhH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKDIE-EACFHLSK-LKGLKTLAMTTNG--------L--TLARKL 77 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~~~-~ii~~~~~-~~~~~~v~i~TNG--------~--ll~~~~ 77 (298)
+...||.|++.+.++++.+.|+..|.|+||| |-+..++. ++++.+++ ..++. +.-.|++ . ...|.+
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~-i~a~s~~ei~~~~~~~~~s~~E~l 164 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLH-IHALSAGEILFLAREGGLSYEEVL 164 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchh-hcccCHHHhHHHHhccCCCHHHHH
Confidence 4458999999999999999999999999999 88887754 88898887 23332 3333433 2 224679
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhh-cC-CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH----hh
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFL-TR-RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT----RD 151 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~i-r~-~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~----~~ 151 (298)
++|+++|++.+...---.-.+.++++ .+ +.+++.-++.++.+.+.|+ +....+++.-+.+.++..+-+..+ .+
T Consensus 165 ~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI-~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~ 243 (370)
T COG1060 165 KRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGI-PTTATMLLGHVETREDRIDHLEHIRDLQDE 243 (370)
T ss_pred HHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999955444333223333232 22 2359999999999999999 554444444345665543333333 33
Q ss_pred CCC--eeEEEeeecCCCC-CCcccCCCCHHHHHHHHH
Q 022377 152 RPI--NIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 152 ~g~--~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~ 185 (298)
.|. .+....|.|.... .-......+..+.+..++
T Consensus 244 ~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iA 280 (370)
T COG1060 244 TGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIA 280 (370)
T ss_pred hCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHH
Confidence 443 2333455554333 111222345566655543
|
|
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-07 Score=71.83 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCC--CEEEEcCCccCcccc---HHHHHHHHhccC-CCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGV--DKIRLTGGEPTVRKD---IEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~--~~v~~tGGEPll~~~---~~~ii~~~~~~~-~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
+..++.+.+.++++.+...+. ..|+|+|||||++.+ +.++++++++.. +.. + +.+||+.+++.... ....+
T Consensus 44 g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~-i-~~~tGy~~eel~~~-~~~~l 120 (154)
T PRK11121 44 GHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPLHPQNVPDILKLVQRVKAECPGKD-I-WVWTGYKLDELNAA-QRQVV 120 (154)
T ss_pred CcccCHHHHHHHHHHHHHhCCCCCcEEEECCCccchhhHHHHHHHHHHHHHHCCCCC-E-EEecCCCHHHHHHH-HHHHH
Confidence 345787888888888776654 689999999999663 447777776632 443 5 56899998764322 22235
Q ss_pred CeEEEecCCC
Q 022377 86 TSVNISLDTL 95 (298)
Q Consensus 86 ~~v~iSldg~ 95 (298)
+.+.|-+||.
T Consensus 121 ~~~DvlvDG~ 130 (154)
T PRK11121 121 DLIDVLVDGK 130 (154)
T ss_pred hhCCEEEech
Confidence 5667888884
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=79.92 Aligned_cols=171 Identities=19% Similarity=0.191 Sum_probs=121.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc----------------cc-HHHHHHHHhccCCCCcEEEEeCccc
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR----------------KD-IEEACFHLSKLKGLKTLAMTTNGLT 72 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~----------------~~-~~~ii~~~~~~~~~~~v~i~TNG~l 72 (298)
+...|+.||+.+.++++.+.|+..+.|+||+ |-+. .+ +.++++.+++..++. ..+ +=|.+
T Consensus 98 ~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~-p~i-~~G~l 175 (843)
T PRK09234 98 EAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLL-PHL-NPGVM 175 (843)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCC-cee-eeCCC
Confidence 3456999999999999999999999999998 6543 13 447777777644653 433 33555
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhh------hcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEF------LTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~------ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
..+.+..|++.+++ ..+++....+..|.. +...+.+..-++.++.+.+.|+ ++...+.+--|++.++..+.+
T Consensus 176 s~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi-~~tsG~L~GiGEt~edRve~L 253 (843)
T PRK09234 176 SWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSV-PFTTGILIGIGETLAERAESL 253 (843)
T ss_pred CHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCC-CccceEEEECCCCHHHHHHHH
Confidence 57889999999887 677777755555532 1223347777999999999999 888777777788888877777
Q ss_pred HHHhhC-----CC-eeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 147 ELTRDR-----PI-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 147 ~~~~~~-----g~-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..++++ |+ .+-.+.|+|..++........+.++.++.++
T Consensus 254 ~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iA 298 (843)
T PRK09234 254 FAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIA 298 (843)
T ss_pred HHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHH
Confidence 777765 34 3445577777666554445577777766543
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=69.37 Aligned_cols=159 Identities=9% Similarity=0.118 Sum_probs=114.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------------ccccHHHHHHHHhccC-CCCcEEEEe-Cccch-Hh
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------------VRKDIEEACFHLSKLK-GLKTLAMTT-NGLTL-AR 75 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------------l~~~~~~ii~~~~~~~-~~~~v~i~T-NG~ll-~~ 75 (298)
+-...+++++.+-++.+.+.|++.|.|+|..-. ....+.++++.+.+.. +. .+.+.+ +...+ ++
T Consensus 193 ~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~-~ir~~~~~p~~l~~e 271 (467)
T PRK14329 193 RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDM-RIRFSTSHPKDMTDD 271 (467)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCc-EEEEecCCcccCCHH
Confidence 346678899888888888889888988763211 0124778888776532 33 355543 34344 56
Q ss_pred hHHHHHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCC-CEEEEEE-EecCCCHhHHHHHHHHHhh
Q 022377 76 KLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN-PVKVNCV-VMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 76 ~~~~l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i~~v-i~~~~n~~~i~~i~~~~~~ 151 (298)
.++.+.++ ++..+.+.+.+.+++.-+.+++..+.+..++.++.+++.+.. .+...++ -.||++.+++.+.++++.+
T Consensus 272 ll~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~ 351 (467)
T PRK14329 272 VLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEE 351 (467)
T ss_pred HHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHh
Confidence 78888776 689999999999999998988877888899999999987430 3333333 3388999999999999999
Q ss_pred CCCe-eEEEeeecCCCCCCc
Q 022377 152 RPIN-IRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g~~-~~~~~~~p~~~~~~~ 170 (298)
++.+ +.+..|.|..++...
T Consensus 352 l~~~~~~v~~~sp~pGT~~~ 371 (467)
T PRK14329 352 VGYDFAFMFKYSERPGTYAA 371 (467)
T ss_pred hCCCeEeeeEecCCCCChhh
Confidence 8874 455677887766543
|
|
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.1e-05 Score=66.40 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHh-CCCC----EE-EEcCC---ccCccc-c-HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHH
Q 022377 14 LLSLNEILRLAYLFVT-SGVD----KI-RLTGG---EPTVRK-D-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLK 81 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~-~~~~----~v-~~tGG---EPll~~-~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~ 81 (298)
..+.+.+.+-++.+.+ .+.. .+ .|++| .|..-+ + +.++++.+++...+..+++.|+.-.+ ++.++.++
T Consensus 45 ~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~ 124 (313)
T TIGR01210 45 EVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELR 124 (313)
T ss_pred CCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHH
Confidence 4588887776666554 2322 22 36666 666544 3 55888888774325458888988766 67899999
Q ss_pred HcCCC-eEEEecCCCCHHhhh-hhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cC----CCHhHHHHHHHHHhhCCC
Q 022377 82 ESGLT-SVNISLDTLVPAKFE-FLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RG----FNDDEICDFVELTRDRPI 154 (298)
Q Consensus 82 ~~~~~-~v~iSldg~~~~~~~-~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~----~n~~~i~~i~~~~~~~g~ 154 (298)
++|+. .|.+.+++.+++.-+ .++++.+.+.++++++.++++|+ .+...+++- |+ ++.+++.+.++++..++-
T Consensus 125 ~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi-~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~ 203 (313)
T TIGR01210 125 KIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGA-GVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTD 203 (313)
T ss_pred HcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCC-cEEEEEEecCCCCChhhhHHHHHHHHHHHHhcCC
Confidence 99998 799999999999884 67777789999999999999999 787777665 32 234556667788877764
Q ss_pred eeEEEeeecCCCC
Q 022377 155 NIRFIEFMPFDGN 167 (298)
Q Consensus 155 ~~~~~~~~p~~~~ 167 (298)
.+++..+.+..++
T Consensus 204 ~vs~~~l~v~~gT 216 (313)
T TIGR01210 204 TVSINPTNVQKGT 216 (313)
T ss_pred cEEEECCEEeCCC
Confidence 4566666655443
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=67.65 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=124.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC------CccCc--cccHHHHHHHHhccCCCCcEEEEeC-ccch-HhhHH
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTV--RKDIEEACFHLSKLKGLKTLAMTTN-GLTL-ARKLP 78 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------GEPll--~~~~~~ii~~~~~~~~~~~v~i~TN-G~ll-~~~~~ 78 (298)
+++....+++++.+=++.+.+.|++.|.|+| |--+- .+.|.++++.+.+..|+.++.++|- ..-+ ++.++
T Consensus 167 RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~ 246 (437)
T COG0621 167 RGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIE 246 (437)
T ss_pred CCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHH
Confidence 4456678999999999999999999999987 55555 4678899999988767666776543 4334 45666
Q ss_pred HHHHc-C-CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCC
Q 022377 79 KLKES-G-LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 79 ~l~~~-~-~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g 153 (298)
.+.+. . +.++.+++++.++..-..+++..+-+..++-++.+++.-- .+.+.+ |-.||++++++++.++++.+.+
T Consensus 247 ~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~P-d~~i~tDiIVGFPgETeedFe~tl~lv~e~~ 325 (437)
T COG0621 247 AIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARP-DIAISTDIIVGFPGETEEDFEETLDLVEEVR 325 (437)
T ss_pred HHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCC-CceEeccEEEECCCCCHHHHHHHHHHHHHhC
Confidence 66663 2 5679999999999999999998888999999999998744 666765 5568999999999999999988
Q ss_pred Ce-eEEEeeecCCCCC
Q 022377 154 IN-IRFIEFMPFDGNV 168 (298)
Q Consensus 154 ~~-~~~~~~~p~~~~~ 168 (298)
.+ +..+.|.|-.+++
T Consensus 326 fd~~~~F~YSpRpGTp 341 (437)
T COG0621 326 FDRLHVFKYSPRPGTP 341 (437)
T ss_pred CCEEeeeecCCCCCCc
Confidence 74 4556777765543
|
|
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-06 Score=71.73 Aligned_cols=69 Identities=28% Similarity=0.355 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh---HHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK---LPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~---~~~l~~ 82 (298)
....++.+++.+.+.... .+...|+||||||++++++..+++.+++. |++ +.+.|||++-... ++.+..
T Consensus 52 ~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~-g~~-~~lETngti~~~~~~~~d~l~~ 123 (212)
T COG0602 52 PGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQPNLLELLELLKRL-GFR-IALETNGTIPVWTGYTIDELTV 123 (212)
T ss_pred CCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCcccHHHHHHHHHhC-Cce-EEecCCCCcccccccchHhHhc
Confidence 456788888766655432 34469999999999899999999999995 995 9999999876432 455444
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00012 Score=62.27 Aligned_cols=169 Identities=19% Similarity=0.250 Sum_probs=129.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCccc---cHHHHHHHHhccC-CCCcEEEEeCccch-HhhHHHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRK---DIEEACFHLSKLK-GLKTLAMTTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~~---~~~~ii~~~~~~~-~~~~v~i~TNG~ll-~~~~~~l~~ 82 (298)
++...++++|=.++.+..+.+|...|.+|+ -+-|-.. +|.+.++.+++.. +. .+.+.|--+.= ...++.+.+
T Consensus 92 g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t-~iEvL~PDF~G~~~al~~v~~ 170 (306)
T COG0320 92 GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQT-TIEVLTPDFRGNDDALEIVAD 170 (306)
T ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCc-eEEEeCccccCCHHHHHHHHh
Confidence 447889999999999999999999999986 4445443 4889999998852 45 36666654433 567999999
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE-
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI- 159 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~- 159 (298)
++.+.++-.+.+. +..|..+|.+.+|++-++-++.+++.+ + ..+...++.-|++.+|+.+.++=+.+.|+++--+
T Consensus 171 ~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i-~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiG 248 (306)
T COG0320 171 AGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDI-PTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIG 248 (306)
T ss_pred cCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCc-ccccceeeecCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 9999999999996 788999998888999999999999987 5 5666777777899999999999999999986444
Q ss_pred eeecCCCCCCcccCCCCHHHHH
Q 022377 160 EFMPFDGNVWNVKKLVPYAEML 181 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~ 181 (298)
+|+-.......-+...+.+|+.
T Consensus 249 QYlqPS~~HlpV~ryv~PeeF~ 270 (306)
T COG0320 249 QYLQPSRKHLPVQRYVTPEEFD 270 (306)
T ss_pred cccCCccccCCceeccCHHHHH
Confidence 4543333323233445555543
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-05 Score=69.99 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=85.3
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhh
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRD 151 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~ 151 (298)
.++.++++.+.+++-++||+++.+|+.-.++.+...-.++++.++.|.++|+ .+..+.|+.||.|+ +++++.++.+.+
T Consensus 127 ~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I-~~h~qiVlcPGiNDg~~L~~Ti~dL~~ 205 (433)
T TIGR03279 127 PPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRL-QLHAQVVVCPGINDGKHLERTLRDLAQ 205 (433)
T ss_pred CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCC-eEEEEEEEcCCcCCHHHHHHHHHHHHh
Confidence 3678999999999999999999999998888887788999999999999999 99999999999998 579999998888
Q ss_pred CC----CeeEEEeeecCCCCCCc
Q 022377 152 RP----INIRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g----~~~~~~~~~p~~~~~~~ 170 (298)
++ -.+..+...|+|-+++.
T Consensus 206 ~~~~~~P~v~S~avVPVGlTk~R 228 (433)
T TIGR03279 206 FHDGDWPTVLSVAVVPVGLTRFR 228 (433)
T ss_pred hcccCCCceeEEEEEccccccCC
Confidence 73 35778889999866553
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=63.31 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
..+|+.+++.+.|++... .+..|+||||| +.++++.++++++++. |+. +.+.||++. ++..+.+.+ .+|.+.
T Consensus 43 g~~lt~eel~~~I~~~~~-~~~gVt~SGGE-l~~~~l~~ll~~lk~~-Gl~-i~l~Tg~~~-~~~~~~il~-~iD~l~ 114 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRS-LISCVLFLGGE-WNREALLSLLKIFKEK-GLK-TCLYTGLEP-KDIPLELVQ-HLDYLK 114 (147)
T ss_pred CcCCCHHHHHHHHHHhCC-CCCEEEEechh-cCHHHHHHHHHHHHHC-CCC-EEEECCCCC-HHHHHHHHH-hCCEEE
Confidence 457999999999887653 35799999999 7777799999999995 995 999999764 333344443 355443
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00019 Score=71.83 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=104.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccC-CCCcEEEE----------eCccchHhhHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-GLKTLAMT----------TNGLTLARKLP 78 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~-~~~~v~i~----------TNG~ll~~~~~ 78 (298)
...|+.|++.+.+.++.+.|+..|++.||+ |-+..+ +.++++.+++.. ++. +... +.|....+.+.
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~-i~afsp~Ei~~~a~~~Gl~~~e~l~ 632 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMH-VHAFSPMEIVNGAARLGLSIREWLT 632 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCee-EEecChHHHHHHHHHcCCCHHHHHH
Confidence 446999999999999999999999999997 544443 558889888742 453 4322 35766688999
Q ss_pred HHHHcCCCeEEEecCCCCHHhhh-----hhcC-CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhC
Q 022377 79 KLKESGLTSVNISLDTLVPAKFE-----FLTR-RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDR 152 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~-----~ir~-~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~ 152 (298)
+|+++|++.+. +..++.++ .+.. .-+.+.-++.++.+++.|+ ++...+++.-+++.++..+.+.+++++
T Consensus 633 ~LkeAGLds~p----gt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi-~~~stmm~G~~Et~edrv~hl~~LreL 707 (843)
T PRK09234 633 ALREAGLDTIP----GTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGL-RSSSTMMYGHVDTPRHWVAHLRVLRDI 707 (843)
T ss_pred HHHHhCcCccC----CCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-CcccceEEcCCCCHHHHHHHHHHHHhc
Confidence 99999999664 43455444 3333 2346677899999999999 887777777778889999999999998
Q ss_pred CC
Q 022377 153 PI 154 (298)
Q Consensus 153 g~ 154 (298)
..
T Consensus 708 q~ 709 (843)
T PRK09234 708 QD 709 (843)
T ss_pred Cc
Confidence 76
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00032 Score=64.32 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+ |-|-+.++-.+.++.+.+. +.. ..+.+-+....+.++...
T Consensus 12 LRDG~Q~~--~~~~s~e~k~~ia~~L~~~GV~~IE~--G~p~~~~~~~e~i~~i~~~-~~~-~~i~~~~r~~~~di~~a~ 85 (378)
T PRK11858 12 LRDGEQTP--GVVFTNEEKLAIARMLDEIGVDQIEA--GFPAVSEDEKEAIKAIAKL-GLN-ASILALNRAVKSDIDASI 85 (378)
T ss_pred CCccCcCC--CCCCCHHHHHHHHHHHHHhCCCEEEE--eCCCcChHHHHHHHHHHhc-CCC-eEEEEEcccCHHHHHHHH
Confidence 56766665 56899999999999999999998886 5788888777888888773 664 666666655566788999
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+++...+.....+++.. ..++.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 86 ~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 86 DCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL-YVSFSAEDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred hCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999999999877443333344432 237888889999999999 887776433336778899999999988875
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00087 Score=58.24 Aligned_cols=174 Identities=18% Similarity=0.174 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+. =|-+.+.-.+.++.+.+. ... ..+..=.....+.++...
T Consensus 6 lRDG~Q~~--~~~~~~~~k~~i~~~L~~~Gv~~iE~g--~p~~~~~~~e~~~~l~~~-~~~-~~~~~~~r~~~~~v~~a~ 79 (259)
T cd07939 6 LRDGEQAP--GVAFSREEKLAIARALDEAGVDEIEVG--IPAMGEEEREAIRAIVAL-GLP-ARLIVWCRAVKEDIEAAL 79 (259)
T ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--cCCCCHHHHHHHHHHHhc-CCC-CEEEEeccCCHHHHHHHH
Confidence 67887776 568999999999999999999988884 355555445677777662 221 223221212355688888
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
+.|++.|.+++..-+......++.. ..++.+.+.++.+++.|+ .+.+++......+.+.+.++++.+.+.|++ .+
T Consensus 80 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~i 156 (259)
T cd07939 80 RCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEAGAD--RL 156 (259)
T ss_pred hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHCCCC--EE
Confidence 9999999998865322222333322 237788889999999999 888887666546778899999988888874 23
Q ss_pred eeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 160 EFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.+....+. . .+....++...+.+.+
T Consensus 157 ~l~DT~G~-~---~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 157 RFADTVGI-L---DPFTTYELIRRLRAAT 181 (259)
T ss_pred EeCCCCCC-C---CHHHHHHHHHHHHHhc
Confidence 33332222 1 1123455566666655
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0021 Score=53.16 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc---ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR---KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~---~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.|.+++.+-+.++.+.|...+.++||- |-.. .++.+.++++++..++. +.. --|..-++.++++++++++.+.+
T Consensus 39 vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~-ina-HvGfvdE~~~eklk~~~vdvvsL 116 (275)
T COG1856 39 VTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLL-INA-HVGFVDESDLEKLKEELVDVVSL 116 (275)
T ss_pred cchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeE-EEE-EeeeccHHHHHHHHHhcCcEEEE
Confidence 345667777778888999999999885 3333 23667778887754553 322 33544466899999999999988
Q ss_pred ecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEe--cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 91 SLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVM--RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~--~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
.+=| +.++-..+.+- .+-+..++.++.|.+.|+ ++.-.+++. .|.-..|+.++ +.+.+... .+....++|..+
T Consensus 117 Dfvg-Dn~vIk~vy~l~ksv~dyl~~l~~L~e~~i-rvvpHitiGL~~gki~~e~kaI-diL~~~~~DalVl~vliPtpG 193 (275)
T COG1856 117 DFVG-DNDVIKRVYKLPKSVEDYLRSLLLLKENGI-RVVPHITIGLDFGKIHGEFKAI-DILVNYEPDALVLVVLIPTPG 193 (275)
T ss_pred eecC-ChHHHHHHHcCCccHHHHHHHHHHHHHcCc-eeceeEEEEeccCcccchHHHH-HHHhcCCCCeEEEEEEecCCc
Confidence 8888 45555566554 358899999999999999 765555443 33233455444 44444344 356778999988
Q ss_pred CCCcccCCCCHHHHHHHHHHh
Q 022377 167 NVWNVKKLVPYAEMLDTVVKK 187 (298)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~~ 187 (298)
+.+......+.+|....+...
T Consensus 194 tkm~~~~pp~~eE~i~v~~~A 214 (275)
T COG1856 194 TKMGNSPPPPVEEAIKVVKYA 214 (275)
T ss_pred hhccCCCCcCHHHHHHHHHHH
Confidence 888777777888877666543
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00054 Score=59.49 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
||+|.|.. +..+|.++..++++.+.+.|+..|-+.. |-..++..+.++.+.+. +.. ..+.+=+....+.++...
T Consensus 8 LRDG~Q~~--~~~~s~~~k~~i~~~L~~~Gv~~IEvG~--P~~~~~~~~~~~~l~~~-~~~-~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 8 LREGEQFA--NAFFDTEDKIEIAKALDAFGVDYIELTS--PAASPQSRADCEAIAKL-GLK-AKILTHIRCHMDDARIAV 81 (262)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEEC--CCCCHHHHHHHHHHHhC-CCC-CcEEEEecCCHHHHHHHH
Confidence 67877766 4789999999999999999999888865 88888877777777653 432 333332222356788889
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 158 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~ 158 (298)
+.|++.|.+.+-. ++.....-.+. ...+.+.+.++.+++.|+ .+.+...-.-+.+.+.+.++++.+.+.|++ .
T Consensus 82 ~~g~~~i~i~~~~-S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~g~~--~ 157 (262)
T cd07948 82 ETGVDGVDLVFGT-SPFLREASHGKSITEIIESAVEVIEFVKSKGI-EVRFSSEDSFRSDLVDLLRVYRAVDKLGVN--R 157 (262)
T ss_pred HcCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeeCCCCHHHHHHHHHHHHHcCCC--E
Confidence 9999999998866 33322222221 237778888899999999 888776433336778899999999988875 2
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 159 IEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.+....+. . .+....++...+++.+
T Consensus 158 i~l~Dt~G~-~---~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 158 VGIADTVGI-A---TPRQVYELVRTLRGVV 183 (262)
T ss_pred EEECCcCCC-C---CHHHHHHHHHHHHHhc
Confidence 333333221 1 1123455666666655
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.7e-05 Score=63.81 Aligned_cols=219 Identities=17% Similarity=0.246 Sum_probs=137.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc------CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT------GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t------GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
..+.|..+++.+-.+++++.|-...+.. -|--.....+.++++.++. .|+. + +.|=|.+-.+...+|+++|
T Consensus 113 A~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~-MgmE-v-CvTLGMv~~qQAkeLKdAG 189 (380)
T KOG2900|consen 113 AEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRD-MGME-V-CVTLGMVDQQQAKELKDAG 189 (380)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHc-CCce-e-eeeeccccHHHHHHHHhcc
Confidence 3456888888888888888774444332 1333333445566666666 3774 4 5588866677899999999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC---CeeEEEee
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP---INIRFIEF 161 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g---~~~~~~~~ 161 (298)
+...+-.||. ..|.|.++--..+|+..++.|+.++++|+ .+...-++.-|+..++-.-++.-+..+. -.+-++.+
T Consensus 190 LTAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~aGi-kvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~L 267 (380)
T KOG2900|consen 190 LTAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREAGI-KVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRL 267 (380)
T ss_pred ceecccCccc-hhhhhcccceecchHHHHHHHHHHHHhcc-eecccccccccccccceeeeeeeeccCCCCCcccccceE
Confidence 9999999999 57888887777789999999999999999 7776666665666555434444333322 23455566
Q ss_pred ecCCCCCCcc--cCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc--CCCCeEEEeccc
Q 022377 162 MPFDGNVWNV--KKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC--AGCNRLRLLADG 237 (298)
Q Consensus 162 ~p~~~~~~~~--~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~~~~~~I~~dG 237 (298)
.+..+++... ...+...++++.|.... +.- +....++.. ++..+ +......| +||+++.-...-
T Consensus 268 vaikGTP~~d~~~k~l~i~e~lR~IaTAR--IvM-------PKaiiRlaA--GR~t~-sesEQalcFmAGaNsiFTGeKm 335 (380)
T KOG2900|consen 268 VAIKGTPMADEKSKKLQIDEILRTIATAR--IVM-------PKAIIRLAA--GRYTM-SESEQALCFMAGANSIFTGEKM 335 (380)
T ss_pred EecCCcccchhhcccccHHHHHHHHhhhh--eec-------hHHHHHHhc--ccccc-chhHHHHHHHhCCccceechhh
Confidence 6766554333 55677888887776543 000 000000000 11111 01112346 899988766665
Q ss_pred ceeecCCCC
Q 022377 238 NFKVCLFGP 246 (298)
Q Consensus 238 ~v~pC~~~~ 246 (298)
--.||-.++
T Consensus 336 LTTp~n~wD 344 (380)
T KOG2900|consen 336 LTTPCNGWD 344 (380)
T ss_pred hcCCCCCcc
Confidence 667887554
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00073 Score=61.61 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+ |-|...++-.+.++.+.+. +.. ..+.+-+....+.++...
T Consensus 8 LRDG~Q~~--~~~~s~~~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~e~i~~i~~~-~~~-~~v~~~~r~~~~di~~a~ 81 (363)
T TIGR02090 8 LRDGEQTP--GVSLTVEQKVEIARKLDELGVDVIEA--GFPIASEGEFEAIKKISQE-GLN-AEICSLARALKKDIDKAI 81 (363)
T ss_pred CCCcCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCChHHHHHHHHHHhc-CCC-cEEEEEcccCHHHHHHHH
Confidence 57777774 57899999999999999999998886 5677777767788887764 443 445444433467789999
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+++...+......++.. ..++.+.+.++.+++.|. .+.+.. ..++ .+.+.+.++++.+.+.|++
T Consensus 82 ~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 82 DCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL-IVEFSAEDATR-TDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEeecCC-CCHHHHHHHHHHHHhCCCC
Confidence 9999999999876432222233332 238889999999999999 887776 3344 6788899999999888875
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PF13186 SPASM: Iron-sulfur cluster-binding domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=1e-05 Score=54.14 Aligned_cols=46 Identities=30% Similarity=0.464 Sum_probs=32.0
Q ss_pred c-CCCCeEEEecccceeecCC-CCCCCCcchHhhcCCCHHHHHHHHHHHHHhhh
Q 022377 225 C-AGCNRLRLLADGNFKVCLF-GPSEVSLRDPLRQNASDDELREIIGAAVKRKK 276 (298)
Q Consensus 225 C-~~~~~~~I~~dG~v~pC~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (298)
| ++...+.|++||+|+||.. ....+.+++ + +++|.+||.....++-
T Consensus 1 C~~~~~~~~I~~dG~v~pC~~~~~~~~~~Gn-----i-~~~l~eiw~s~~~~~~ 48 (64)
T PF13186_consen 1 CGAGWNSLYIDPDGDVYPCCHDYDPEFKIGN-----I-EDSLEEIWNSPKFREF 48 (64)
T ss_pred CCCcCeEEEEeeCccEEeCCCCCCCCeEEee-----c-CCCHHHHHCCHHHHHH
Confidence 5 5667899999999999953 344566644 4 4579999965444433
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0051 Score=54.28 Aligned_cols=145 Identities=22% Similarity=0.313 Sum_probs=101.1
Q ss_pred CCHHH-HHHHHH-HHHhCCC--CEEEEc-CCccCcccc----HH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHH---
Q 022377 15 LSLNE-ILRLAY-LFVTSGV--DKIRLT-GGEPTVRKD----IE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLK--- 81 (298)
Q Consensus 15 l~~e~-~~~~i~-~~~~~~~--~~v~~t-GGEPll~~~----~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~--- 81 (298)
+..++ +..+++ ++.+.+. ..|.++ -=+|....+ +. .+++.+.+ .+.. +.|.|-..+..+.++.|.
T Consensus 62 v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~-~~~~-v~I~TKS~lv~RDld~l~~~~ 139 (297)
T COG1533 62 VNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLK-YGFP-VSIVTKSALVLRDLDLLLELA 139 (297)
T ss_pred eeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHH-cCCc-EEEEECCcchhhhHHHHHhhh
Confidence 34444 555444 3332222 345554 378998854 33 55555555 4885 999999988765555554
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
..+...|.+|+-+.+++....+-.. ++.+.-+++++.|.++|+ ++.+.+ -+.|+.|+++++++++-+.+.|+.....
T Consensus 140 ~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi-~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 140 ERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGI-PVGLFVAPIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred hccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCC-eEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 5555669999999876666666543 459999999999999999 888876 7778889999999999999888754333
Q ss_pred eee
Q 022377 160 EFM 162 (298)
Q Consensus 160 ~~~ 162 (298)
.+.
T Consensus 219 ~~l 221 (297)
T COG1533 219 GTL 221 (297)
T ss_pred eee
Confidence 333
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0096 Score=51.82 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=108.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCc-----cCccccHHHHHHHHhc-cCCCCcEE-EEeC
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGE-----PTVRKDIEEACFHLSK-LKGLKTLA-MTTN 69 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGE-----Pll~~~~~~ii~~~~~-~~~~~~v~-i~TN 69 (298)
+|+|.|. .+..++.++..++++.+.+.|+..|-+. ||. |.... -.+.++.+++ ..+.+ +. +..+
T Consensus 8 lRDG~Q~--~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~-~~e~i~~~~~~~~~~~-~~~~~~~ 83 (263)
T cd07943 8 LRDGMHA--VRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT-DEEYLEAAAEALKQAK-LGVLLLP 83 (263)
T ss_pred CCcCccc--CCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCC-hHHHHHHHHHhccCCE-EEEEecC
Confidence 5788876 5778999999999999999999988876 221 33332 2344455533 23443 43 4445
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
+....+.++...+.+++.|.+.+.. ++ .+.+.+.++.+++.|+ .+.++..-....+.+.+.++++.+
T Consensus 84 ~~~~~~~i~~a~~~g~~~iri~~~~-s~-----------~~~~~~~i~~ak~~G~-~v~~~~~~~~~~~~~~~~~~~~~~ 150 (263)
T cd07943 84 GIGTVDDLKMAADLGVDVVRVATHC-TE-----------ADVSEQHIGAARKLGM-DVVGFLMMSHMASPEELAEQAKLM 150 (263)
T ss_pred CccCHHHHHHHHHcCCCEEEEEech-hh-----------HHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHH
Confidence 5444567888889999999987644 21 2467889999999999 787776333226788899999999
Q ss_pred hhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 150 RDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 150 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.|++. +.+....+. . .+....++.+.+++.++
T Consensus 151 ~~~G~d~--i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 151 ESYGADC--VYVTDSAGA-M---LPDDVRERVRALREALD 184 (263)
T ss_pred HHcCCCE--EEEcCCCCC-c---CHHHHHHHHHHHHHhCC
Confidence 9888853 333332221 1 12235566667776663
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.011 Score=51.78 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=110.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccC--CCCcEEEEe----Cccch--
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--GLKTLAMTT----NGLTL-- 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~--~~~~v~i~T----NG~ll-- 73 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+ |=|..++.-.+.++.+.+.. +.. +.... .+...
T Consensus 6 LRDG~Q~~--~~~~s~e~k~~i~~~L~~~Gv~~IE~--G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 80 (273)
T cd07941 6 LRDGTQGE--GISFSVEDKLRIARKLDELGVDYIEG--GWPGSNPKDTEFFARAKKLKLKHAK-LAAFGSTRRAGVKAEE 80 (273)
T ss_pred CCCcCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEe--cCCcCCHHHHHHHHHHHHcCCCCcE-EEEEecccccCCCccc
Confidence 57877776 67899999999999999999999988 44567777666677766531 221 22211 12111
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe----cCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM----RGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~----~~~n~~~i~~i~~ 147 (298)
+..++...+.|++.|.+.+-..+......+... ..++.+.+.++.+++.|+ .+.++.+.. + .+.+.+.++++
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~~~~~d~~~-~~~~~~~~~~~ 158 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGR-EVIFDAEHFFDGYK-ANPEYALATLK 158 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEeEEeccccCC-CCHHHHHHHHH
Confidence 235778889999999998766322222222221 248888899999999999 887754321 3 45666778888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+.|++ .+.+....+.. .+....++.+.+++.++
T Consensus 159 ~~~~~g~~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 159 AAAEAGAD--WLVLCDTNGGT----LPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHhCCCC--EEEEecCCCCC----CHHHHHHHHHHHHHhCC
Confidence 77887875 23333332221 12234556666666554
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.013 Score=52.91 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKL 77 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~ 77 (298)
||+|.|.. +..++.|+-.++++.+.+.|+..|-.+ ..-|=.-| +..++++.+++..+.. +.... ...+.+
T Consensus 54 lRDG~Q~~--g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~-~~~l~---~n~~di 127 (347)
T PLN02746 54 PRDGLQNE--KNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGAR-FPVLT---PNLKGF 127 (347)
T ss_pred CCccCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCc-eeEEc---CCHHHH
Confidence 67777765 468999999999999999999988775 22322222 4556677776543443 32221 235678
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEE--EE-----ecCCCHhHHHHHHH
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNC--VV-----MRGFNDDEICDFVE 147 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~--vi-----~~~~n~~~i~~i~~ 147 (298)
+...+++.+.|.+.+-. ++.+..+-.+. ..++.+.+.++.+++.|. .+...+ .+ .+ .+.+.+.++++
T Consensus 128 e~A~~~g~~~v~i~~s~-Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r-~~~~~l~~~~~ 204 (347)
T PLN02746 128 EAAIAAGAKEVAVFASA-SESFSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGP-VPPSKVAYVAK 204 (347)
T ss_pred HHHHHcCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCC-CCHHHHHHHHH
Confidence 88889999999999855 44433322222 126777778888889998 776443 22 22 35567888888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
-+.+.|++ .+.+...-+.. .+....++.+.+.+.++
T Consensus 205 ~~~~~Gad--~I~l~DT~G~a----~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 205 ELYDMGCY--EISLGDTIGVG----TPGTVVPMLEAVMAVVP 240 (347)
T ss_pred HHHHcCCC--EEEecCCcCCc----CHHHHHHHHHHHHHhCC
Confidence 88888875 34444332221 12335566666666553
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.011 Score=51.60 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhc-cCCCCcEEEEeCccchHhhHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-LKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~-~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||+|.|.. +..++.++..++++.+.+.|+..|-+.. |-.+++-.+.++.+.+ ..+.. +...+.+ ..+.++..
T Consensus 6 lRDG~Q~~--~~~~~~~~k~~i~~~L~~~Gv~~iEvg~--~~~~~~~~~~~~~l~~~~~~~~-~~~l~r~--~~~~v~~a 78 (268)
T cd07940 6 LRDGEQTP--GVSLTPEEKLEIARQLDELGVDVIEAGF--PAASPGDFEAVKRIAREVLNAE-ICGLARA--VKKDIDAA 78 (268)
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHHHHHHhCCCCE-EEEEccC--CHhhHHHH
Confidence 67888777 4589999999999999999999888742 3344443466666665 23442 4443333 14456777
Q ss_pred HHcC----CCeEEEecCCCCHHhh-hhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC
Q 022377 81 KESG----LTSVNISLDTLVPAKF-EFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 81 ~~~~----~~~v~iSldg~~~~~~-~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g 153 (298)
.+++ ++.|.+.+-. ++... ..++.. ..++.+.+.++.+++.|+ .+.+++......+.+.+.++++.+.+.|
T Consensus 79 ~~~~~~~~~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G 156 (268)
T cd07940 79 AEALKPAKVDRIHTFIAT-SDIHLKYKLKKTREEVLERAVEAVEYAKSHGL-DVEFSAEDATRTDLDFLIEVVEAAIEAG 156 (268)
T ss_pred HHhCCCCCCCEEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEeeecCCCCCHHHHHHHHHHHHHcC
Confidence 7777 8988887643 33322 222221 237888899999999998 8887776555456778899999888888
Q ss_pred CeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 154 INIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
++ .+.+....+.. .+....++++.+++.++
T Consensus 157 ~~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 157 AT--TINIPDTVGYL----TPEEFGELIKKLKENVP 186 (268)
T ss_pred CC--EEEECCCCCCC----CHHHHHHHHHHHHHhCC
Confidence 74 33333332221 12235566667776664
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.014 Score=51.04 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKL 77 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~ 77 (298)
+|+|.|.. ...++.|+-.++++.+.+.|++.|-+. +.-|-.-| +..++++.+....+.+ +.... ...+.+
T Consensus 6 lRDG~Q~~--~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~-~~~~~---~~~~dv 79 (274)
T cd07938 6 PRDGLQNE--KTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVR-YSALV---PNLRGA 79 (274)
T ss_pred CCCCCcCC--CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCE-EEEEC---CCHHHH
Confidence 67777665 578999999999999999999999886 44444323 3446666665533442 33322 234568
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe-------cCCCHhHHHHHHHH
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM-------RGFNDDEICDFVEL 148 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~-------~~~n~~~i~~i~~~ 148 (298)
+...+.+++.|.+.+..-+.-....++.. ..++++.+.++.+++.|. .+.++.... + .+.+.+.++++.
T Consensus 80 ~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~-~v~~~i~~~f~~~~~~~-~~~~~~~~~~~~ 157 (274)
T cd07938 80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL-RVRGYVSTAFGCPYEGE-VPPERVAEVAER 157 (274)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeEecCCCCCC-CCHHHHHHHHHH
Confidence 88889999999998777432222233322 237888889999999998 776554432 3 356778888888
Q ss_pred HhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 149 TRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 149 ~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+.+.|++ .+.+....+. . .+....++...+.+.++
T Consensus 158 ~~~~Ga~--~i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 192 (274)
T cd07938 158 LLDLGCD--EISLGDTIGV-A---TPAQVRRLLEAVLERFP 192 (274)
T ss_pred HHHcCCC--EEEECCCCCc-c---CHHHHHHHHHHHHHHCC
Confidence 8888875 3333333222 1 12234556666666553
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0058 Score=55.82 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. ...++.++..++++.+.+.|+..|-+ |=|-+.+.-.+.++.+.+. ... ..+.+=+....+.++...
T Consensus 9 LRDG~Q~~--~~~~s~~~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~e~i~~i~~~-~~~-~~i~~~~r~~~~di~~a~ 82 (365)
T TIGR02660 9 LRDGEQAP--GVAFTAAEKLAIARALDEAGVDELEV--GIPAMGEEERAVIRAIVAL-GLP-ARLMAWCRARDADIEAAA 82 (365)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHc-CCC-cEEEEEcCCCHHHHHHHH
Confidence 56777665 46799999999999999999998887 4566666555777777663 332 334332323356788889
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCC--cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+.+..-+.....+++... ..+.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 83 ~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 157 (365)
T TIGR02660 83 RCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL-FVSVGGEDASRADPDFLVELAEVAAEAGAD 157 (365)
T ss_pred cCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-EEEEeecCCCCCCHHHHHHHHHHHHHcCcC
Confidence 99999999998663322333333322 26777788999999998 777776444335677888898888888875
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0043 Score=54.20 Aligned_cols=150 Identities=18% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEE--eCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--
Q 022377 32 VDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMT--TNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR-- 106 (298)
Q Consensus 32 ~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~--TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~-- 106 (298)
...++++ =-+|=..+++..+++.++-..+.. ++|. -+...+.+.+...++.|.+.+.|-+|.++++.+..++..
T Consensus 87 ~~rici~~i~~p~~~~d~~~i~~~~~~~~~~~-itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~ 165 (339)
T COG2516 87 FKRICIQQIAYPRALNDLKLILERLHIRLGDP-ITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSG 165 (339)
T ss_pred cccccceeeccccccchhhhhhhhhhhccCCc-eehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccC
Confidence 3567775 477888888998898887324664 6665 455555677888889999999999999999999999533
Q ss_pred --CcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHH
Q 022377 107 --KGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLD 182 (298)
Q Consensus 107 --~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~ 182 (298)
.+|++-.+.+..+.++ |..++.+...+.-|..+.++-+.+..+...|..++...|-|..++...+....+.+.+.+
T Consensus 166 s~~S~e~~~~~l~~~~~~~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk 244 (339)
T COG2516 166 SPHSWERYWEFLEKVAEAFGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRK 244 (339)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCcceeEEeccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHHH
Confidence 2499999999988875 533677777666778999999999999999998889999998777665555555554433
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.03 Score=50.57 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC----------ccCccccHHHHHHHHhc-cCCCCcEE-EEeC
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG----------EPTVRKDIEEACFHLSK-LKGLKTLA-MTTN 69 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGG----------EPll~~~~~~ii~~~~~-~~~~~~v~-i~TN 69 (298)
+|+|.+. .+..++.++..++++.+.+.|+..|-++-| -|...++ .+.++.+.+ ..+.+ +. +...
T Consensus 11 LRDG~q~--~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~-~e~i~~~~~~~~~~~-~~~ll~p 86 (337)
T PRK08195 11 LRDGMHA--VRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTD-EEYIEAAAEVVKQAK-IAALLLP 86 (337)
T ss_pred CCCcCcC--CCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCH-HHHHHHHHHhCCCCE-EEEEecc
Confidence 5777755 477899999999999999999998888521 1222233 234444432 22332 33 3344
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
|.-..+.++...+.|++.|.|..... + .+.+.+.++.+++.|. .+.++.......+.+++.++++.+
T Consensus 87 g~~~~~dl~~a~~~gvd~iri~~~~~-e-----------~~~~~~~i~~ak~~G~-~v~~~l~~a~~~~~e~l~~~a~~~ 153 (337)
T PRK08195 87 GIGTVDDLKMAYDAGVRVVRVATHCT-E-----------ADVSEQHIGLARELGM-DTVGFLMMSHMAPPEKLAEQAKLM 153 (337)
T ss_pred CcccHHHHHHHHHcCCCEEEEEEecc-h-----------HHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHH
Confidence 44344678888899999999886442 1 2468899999999999 888877666546788899999999
Q ss_pred hhCCCe
Q 022377 150 RDRPIN 155 (298)
Q Consensus 150 ~~~g~~ 155 (298)
.+.|++
T Consensus 154 ~~~Ga~ 159 (337)
T PRK08195 154 ESYGAQ 159 (337)
T ss_pred HhCCCC
Confidence 998875
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.027 Score=51.70 Aligned_cols=172 Identities=17% Similarity=0.291 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHhCCC--C--EEEEcCCccCccc-c----HHH-HHHHHh----------------ccCCCCcEEEEe
Q 022377 15 LSLNEILRLAYLFVTSGV--D--KIRLTGGEPTVRK-D----IEE-ACFHLS----------------KLKGLKTLAMTT 68 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~--~--~v~~tGGEPll~~-~----~~~-ii~~~~----------------~~~~~~~v~i~T 68 (298)
=+..+...-|+++...|- . .+.|.||-=+..+ + |+. +.+++. ..+-+ -+.+.|
T Consensus 113 dpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~v-gitiET 191 (515)
T COG1243 113 DPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCV-GITIET 191 (515)
T ss_pred CcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhccccccee-EEEEec
Confidence 345667777888888763 2 5667788844333 3 332 222222 11112 367788
Q ss_pred Cccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCH-hHHHHH
Q 022377 69 NGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFND-DEICDF 145 (298)
Q Consensus 69 NG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~-~~i~~i 145 (298)
-.-.. ++.++.+++.|...|-+.+++..+++..+..++.+.+.+.++-+.++++|+ .+...++. .||.+. .+++.+
T Consensus 192 RPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~Gf-Kv~~HiMpGLPgs~~erDl~~f 270 (515)
T COG1243 192 RPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGF-KVGYHIMPGLPGSDFERDLESF 270 (515)
T ss_pred CccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCc-EEEEEecCCCCCCChHHHHHHH
Confidence 87777 568999999999999999999988888888888889999999999999999 77665532 344443 468888
Q ss_pred HHHHhhCCCeeEEEeeec---CCCCC----Cccc--CCCCHHHHHHHHHHhC
Q 022377 146 VELTRDRPINIRFIEFMP---FDGNV----WNVK--KLVPYAEMLDTVVKKF 188 (298)
Q Consensus 146 ~~~~~~~g~~~~~~~~~p---~~~~~----~~~~--~~~~~~e~~~~i~~~~ 188 (298)
.+.+.+-.+.-....+.| ..++. |... .+++.++..+.+...+
T Consensus 271 ~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 271 REIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred HHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888776544222333334 23332 4332 3466777777766655
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.035 Score=49.98 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CC-----ccCccccHHHHHHHHhccCCCCcEE-EEeCc
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-----GG-----EPTVRKDIEEACFHLSKLKGLKTLA-MTTNG 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GG-----EPll~~~~~~ii~~~~~~~~~~~v~-i~TNG 70 (298)
+|+|.+. .+..++.++..++++.+.+.|+..|-++ || -|...+++..+-+.+....+.+ +. +..-|
T Consensus 10 LRDG~q~--~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~-~~~ll~pg 86 (333)
T TIGR03217 10 LRDGMHA--IRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAK-VAVLLLPG 86 (333)
T ss_pred CCCCCcC--CCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCE-EEEEeccC
Confidence 5777755 4778999999999999999999988886 21 1333444432222222222332 44 43344
Q ss_pred cchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 71 LTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 71 ~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
.-..+.++...+.|++.|.|...-. + .+.+.+.++.+++.|. .+.++.......+.+++.++++.+.
T Consensus 87 ~~~~~dl~~a~~~gvd~iri~~~~~-e-----------~d~~~~~i~~ak~~G~-~v~~~l~~s~~~~~e~l~~~a~~~~ 153 (333)
T TIGR03217 87 IGTVHDLKAAYDAGARTVRVATHCT-E-----------ADVSEQHIGMARELGM-DTVGFLMMSHMTPPEKLAEQAKLME 153 (333)
T ss_pred ccCHHHHHHHHHCCCCEEEEEeccc-h-----------HHHHHHHHHHHHHcCC-eEEEEEEcccCCCHHHHHHHHHHHH
Confidence 4345678888899999999987542 1 2467899999999999 8877765554467788999999999
Q ss_pred hCCCe
Q 022377 151 DRPIN 155 (298)
Q Consensus 151 ~~g~~ 155 (298)
+.|++
T Consensus 154 ~~Ga~ 158 (333)
T TIGR03217 154 SYGAD 158 (333)
T ss_pred hcCCC
Confidence 88875
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.035 Score=52.11 Aligned_cols=166 Identities=19% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhcc-CCCCcEEEEeCccc--
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLT-- 72 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-- 72 (298)
+|+|.|-.. ...|+.++...+++.+.+.|+..|-..||.-+ ++++-.+.++.+++. .+.. +.+...|..
T Consensus 10 lRDG~Qs~~-~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~-l~~l~r~~N~~ 87 (467)
T PRK14041 10 LRDGHQSLI-ATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTK-IQMLLRGQNLV 87 (467)
T ss_pred CCccccCcC-CccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCE-EEEEecccccc
Confidence 466655432 45799999999999999999999999888653 677777888877663 3443 554334421
Q ss_pred ---------hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhH
Q 022377 73 ---------LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDE 141 (298)
Q Consensus 73 ---------l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~ 141 (298)
+...++...++|++.|.|..-. ++ .+.+...++.+++.|. .+.... +..+..+.+.
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDAL-ND-----------IRNLEKSIEVAKKHGA-HVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeC-CH-----------HHHHHHHHHHHHHCCC-EEEEEEEeccCCCCCHHH
Confidence 1224677788899998888543 33 3567778899999998 776443 3445456777
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++.+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 155 ~~~~a~~l~~~Gad--~I~i~Dt~G~l----~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 155 YLEFARELVDMGVD--SICIKDMAGLL----TPKRAYELVKALKKKF 195 (467)
T ss_pred HHHHHHHHHHcCCC--EEEECCccCCc----CHHHHHHHHHHHHHhc
Confidence 88888888888875 33344332221 1223456666666655
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.036 Score=52.58 Aligned_cols=147 Identities=17% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..|+.++-.++++.+.+.|+..|-. |=|-..++=.+.++.+.+. +.. ..+..=+....+.++...
T Consensus 10 LRDG~Q~~--g~~~s~e~K~~ia~~L~~~Gv~~IE~--G~p~~~~~d~e~v~~i~~~-~~~-~~i~a~~r~~~~di~~a~ 83 (488)
T PRK09389 10 LRDGEQTP--GVSLTPEEKLEIARKLDELGVDVIEA--GSAITSEGEREAIKAVTDE-GLN-AEICSFARAVKVDIDAAL 83 (488)
T ss_pred CCCcCCCC--CCCcCHHHHHHHHHHHHHcCCCEEEE--eCCcCCHHHHHHHHHHHhc-CCC-cEEEeecccCHHHHHHHH
Confidence 56776664 67899999999999999999988876 3466666556677777663 443 444443333456688889
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
+++.+.|.+.+...+......++.. ..++.+.+.++.+++.|. .+.+...-....+.+.+.++++.+.+.|++
T Consensus 84 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 158 (488)
T PRK09389 84 ECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL-IVELSGEDASRADLDFLKELYKAGIEAGAD 158 (488)
T ss_pred hCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEeeCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999999999876432222233322 237888888899999998 777766433325667788888888888875
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.091 Score=46.32 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=107.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKL 77 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~ 77 (298)
||+|.|.. +..++.++-.++++.+.+.|+..|-+. --.|=..| +-.+.++.+.+..+.. +.... ...+.+
T Consensus 12 lRDG~Q~~--~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~-~~~l~---~~~~~i 85 (287)
T PRK05692 12 PRDGLQNE--KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVT-YAALT---PNLKGL 85 (287)
T ss_pred CCccccCc--CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCe-EEEEe---cCHHHH
Confidence 67877765 678999999999999999999988775 22232222 2356666665533442 33221 124567
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCCCc----HHHHHHHHHHHHHcCCCCEEEEEE--Ee-c---CCCHhHHHHHHH
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNCV--VM-R---GFNDDEICDFVE 147 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~v--i~-~---~~n~~~i~~i~~ 147 (298)
+...+.|++.|.+.+.. ++. |....-+.+ .+.+.+.++.+++.|. .+..... +. + ..+.+.+.++++
T Consensus 86 e~A~~~g~~~v~i~~~~-s~~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 86 EAALAAGADEVAVFASA-SEA-FSQKNINCSIAESLERFEPVAEAAKQAGV-RVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHHHcCCCEEEEEEec-CHH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 88888999999999765 443 332221222 5667778888888898 6654433 22 1 135677888888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
-+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 163 ~~~~~G~d--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 163 RLFALGCY--EISLGDTIGVG----TPGQVRAVLEAVLAEFP 198 (287)
T ss_pred HHHHcCCc--EEEeccccCcc----CHHHHHHHHHHHHHhCC
Confidence 88888885 33333332221 12235566666666653
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.048 Score=51.03 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc------cCccccHHHHHHHHhcc-CCCCcEEEEeCcc---
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGL--- 71 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE------Pll~~~~~~ii~~~~~~-~~~~~v~i~TNG~--- 71 (298)
+|+|.|-.. ...++.++...+++.+.+.|+..|-..||. -+++++=.+.++.+++. .+.. +.+...|.
T Consensus 11 lRDG~Qs~~-~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~-l~~l~r~~N~~ 88 (448)
T PRK12331 11 LRDGQQSLI-ATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTK-LQMLLRGQNLL 88 (448)
T ss_pred CCccccCcC-CcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCE-EEEEecccccc
Confidence 466555432 457999999999999999999999999887 55788767777877663 3443 55444332
Q ss_pred --------chHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--EEEecCCCHhH
Q 022377 72 --------TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDE 141 (298)
Q Consensus 72 --------ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~vi~~~~n~~~ 141 (298)
...+.++...++|++.|.|.... ++. +.+.+.++.+++.|. .+.+. ++..+-.+.+.
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~l-nd~-----------~n~~~~v~~ak~~G~-~v~~~i~~t~~p~~~~~~ 155 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDAL-NDV-----------RNLETAVKATKKAGG-HAQVAISYTTSPVHTIDY 155 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEec-CcH-----------HHHHHHHHHHHHcCC-eEEEEEEeecCCCCCHHH
Confidence 22456788889999999988544 322 136668889999998 76544 44444356677
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++-+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 156 ~~~~a~~l~~~Gad--~I~i~Dt~G~l----~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 156 FVKLAKEMQEMGAD--SICIKDMAGIL----TPYVAYELVKRIKEAV 196 (448)
T ss_pred HHHHHHHHHHcCCC--EEEEcCCCCCC----CHHHHHHHHHHHHHhc
Confidence 88888888888875 33333332221 1223456666666655
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.12 Score=45.44 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH-HhCCCCEEEEcCCccCccccHHHHHHHHhccC-------CCCcEEEEeCccch
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK-------GLKTLAMTTNGLTL 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~-~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~-------~~~~v~i~TNG~ll 73 (298)
||+|.|.. +..+|.++-.++++.+ .+.|+..|-++- |-.+++-.+.+..+.+.. +...+.+. ..
T Consensus 5 lRDG~Q~~--~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~----~~ 76 (280)
T cd07945 5 LRDGEQTS--GVSFSPSEKLNIAKILLQELKVDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFV----DG 76 (280)
T ss_pred CCCcCcCC--CCccCHHHHHHHHHHHHHHhCCCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEEEec----Cc
Confidence 68877755 5789999999999996 677999888753 667775444444443311 12111121 11
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe----cCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM----RGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~----~~~n~~~i~~i~~ 147 (298)
...++...++|.+.|.+.+-.-+......++.. ..++++.+.++.+++.|. .+.+...-. + .+.+.+.++++
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r-~~~~~~~~~~~ 154 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMR-DSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCc-CCHHHHHHHHH
Confidence 345788888899999999866322222222322 237888888999999998 766655321 3 46778888898
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 155 ~~~~~G~~--~i~l~DT~G~~----~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 155 FLSDLPIK--RIMLPDTLGIL----SPFETYTYISDMVKRYP 190 (280)
T ss_pred HHHHcCCC--EEEecCCCCCC----CHHHHHHHHHHHHhhCC
Confidence 88888875 33333332221 11234555666665553
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.11 Score=44.90 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhC---CCCEEEEcCCccCccc-c-HHHHHHHHhccCCCCcEEEEeCccchH-hhHHHH---HHcCCCeEE
Q 022377 19 EILRLAYLFVTS---GVDKIRLTGGEPTVRK-D-IEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKL---KESGLTSVN 89 (298)
Q Consensus 19 ~~~~~i~~~~~~---~~~~v~~tGGEPll~~-~-~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l---~~~~~~~v~ 89 (298)
++...++.+.+. +-.-+.|.-.--+-.| + +.++.+.+.+..++.-++|-|-.--++ +.++-| .+..--+|.
T Consensus 68 Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvE 147 (312)
T COG1242 68 QFKEQAERMHKKWKRGKYIAYFQAYTNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVE 147 (312)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEE
Confidence 466666655441 2245666666666655 4 558888877766764455666665564 444444 333334688
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+.|.+.+.++-+.++++.+|+...++++.+++.|+ +|...+ .-.||++.++..+.++.+..+|+ .+.+..+.-+.++
T Consensus 148 LGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgI-kvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT 226 (312)
T COG1242 148 LGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGI-KVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGT 226 (312)
T ss_pred eccchhhHHHHHHHhcccchHHHHHHHHHHHHcCC-eEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCC
Confidence 89999999999999999999999999999999999 887765 44588888999999999999988 4555544444443
Q ss_pred C----Cc--ccCCCCHHHHHHHHHHhC
Q 022377 168 V----WN--VKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 168 ~----~~--~~~~~~~~e~~~~i~~~~ 188 (298)
. |. .-..++.+|..+.+.++.
T Consensus 227 ~m~k~Y~~G~l~~ls~eeYv~~~~d~l 253 (312)
T COG1242 227 PMEKMYEKGRLKFLSLEEYVELVCDQL 253 (312)
T ss_pred hHHHHHHcCCceeccHHHHHHHHHHHH
Confidence 2 21 123567777777666543
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.07 Score=51.66 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=112.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc------cCccccHHHHHHHHhc-cCCCCcEEEEeCcc---
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSK-LKGLKTLAMTTNGL--- 71 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE------Pll~~~~~~ii~~~~~-~~~~~~v~i~TNG~--- 71 (298)
+|+|.|-.. ...|+.++..++++.+.+.|+..|-+.||- ++++++-.+.++.+++ ..+.. +.+...|.
T Consensus 6 lRDG~Qs~~-~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~-l~~L~Rg~N~~ 83 (582)
T TIGR01108 6 LRDAHQSLF-ATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTP-LQMLLRGQNLL 83 (582)
T ss_pred CCccccccC-CccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCE-EEEEEcccccc
Confidence 466544432 457999999999999999999999998874 6788887788888876 33553 65554432
Q ss_pred --------chHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhH
Q 022377 72 --------TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDE 141 (298)
Q Consensus 72 --------ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~ 141 (298)
.+.+.++...++|++.+.|.... ++ .+.+...++.+++.|. .+.... +..+-.+.+.
T Consensus 84 G~~~ypddvv~~~v~~a~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~~~~~ 150 (582)
T TIGR01108 84 GYRHYADDVVERFVKKAVENGMDVFRIFDAL-ND-----------PRNLQAAIQAAKKHGA-HAQGTISYTTSPVHTLET 150 (582)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEec-Cc-----------HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHH
Confidence 12346788888999998888433 32 1467888899999998 776543 3444346778
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++.+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 151 ~~~~~~~~~~~Gad--~I~i~Dt~G~~----~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 151 YLDLAEELLEMGVD--SICIKDMAGIL----TPKAAYELVSALKKRF 191 (582)
T ss_pred HHHHHHHHHHcCCC--EEEECCCCCCc----CHHHHHHHHHHHHHhC
Confidence 88888888888875 33344332221 1123456666666655
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0064 Score=51.97 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCccc--hHhhHHHHHHcCCCeE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKESGLTSV 88 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~l--l~~~~~~l~~~~~~~v 88 (298)
...++.++..++++.+.+.|+..|.+. =|+..++-.+.++.+.+. ... .+...+-... +...++.+.+.+++.+
T Consensus 8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 8 GVAFSTEEKLEIAKALDEAGVDYIEVG--FPFASEDDFEQVRRLREALPNA-RLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp STT--HHHHHHHHHHHHHHTTSEEEEE--HCTSSHHHHHHHHHHHHHHHSS-EEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEc--ccccCHHHHHHhhhhhhhhccc-ccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 344999999999999999999988876 677777644444444332 122 2333222211 2334666777999999
Q ss_pred EEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC
Q 022377 89 NISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD 165 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~ 165 (298)
.+.+.. ++.......+.. ..+.+.+.++.+++.|. .+.+++.-....+.+++.++++.+.+.|++. +.+....
T Consensus 85 ~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--i~l~Dt~ 160 (237)
T PF00682_consen 85 RIFISV-SDLHIRKNLNKSREEALERIEEAVKYAKELGY-EVAFGCEDASRTDPEELLELAEALAEAGADI--IYLADTV 160 (237)
T ss_dssp EEEEET-SHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EEEEEETTTGGSSHHHHHHHHHHHHHHT-SE--EEEEETT
T ss_pred EecCcc-cHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ceEeCccccccccHHHHHHHHHHHHHcCCeE--EEeeCcc
Confidence 999776 443322222321 27788888899999999 8877775543367888999999999888853 3333332
Q ss_pred CCCCcccCCCCHHHHHHHHHHhCCC
Q 022377 166 GNVWNVKKLVPYAEMLDTVVKKFPG 190 (298)
Q Consensus 166 ~~~~~~~~~~~~~e~~~~i~~~~~~ 190 (298)
+. . .+....++.+.+.+.++.
T Consensus 161 G~-~---~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 161 GI-M---TPEDVAELVRALREALPD 181 (237)
T ss_dssp S--S----HHHHHHHHHHHHHHSTT
T ss_pred CC-c---CHHHHHHHHHHHHHhccC
Confidence 22 1 123356778888888754
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.2 Score=43.64 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc---CCccC-----ccccHHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT---GGEPT-----VRKDIEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPKL 80 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t---GGEPl-----l~~~~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~l 80 (298)
+-.++.++..+++..+.+.|+..|-+. +++-. .+.+ .+.++.+.+. .+.+ +......... .+.++..
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSKGNTK-IAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhccCCE-EEEEECCCCCCHHHHHHH
Confidence 667999999999999999999988764 33311 1111 1223333221 1443 5555554433 4567777
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
.+.+++.|.+++.. ..++.+.+.++.+++.|+ .+.++..-..+.+.+.+.++++.+.+.|++ .+.
T Consensus 92 ~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~--~i~ 156 (266)
T cd07944 92 SGSVVDMIRVAFHK------------HEFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEIKPD--VFY 156 (266)
T ss_pred hcCCcCEEEEeccc------------ccHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhCCCC--EEE
Confidence 88899999998632 258899999999999999 888887655557889999999999888874 333
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+....+.. .+....++...+.+.+
T Consensus 157 l~DT~G~~----~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 157 IVDSFGSM----YPEDIKRIISLLRSNL 180 (266)
T ss_pred EecCCCCC----CHHHHHHHHHHHHHhc
Confidence 34332221 1123445555555544
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0078 Score=54.67 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=87.8
Q ss_pred EEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc---H
Q 022377 34 KIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG---H 109 (298)
Q Consensus 34 ~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~---~ 109 (298)
.-.++ =|||.++|.+-.+++.+.+ +.+. --+.||+. ..+.+..+.. +..+-+|+|..++..-..+-+.-. |
T Consensus 356 hcalslVgepi~yp~in~f~k~lH~-k~is-sflvtnaq-~pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFw 430 (601)
T KOG1160|consen 356 HCALSLVGEPIMYPEINPFAKLLHQ-KLIS-SFLVTNAQ-FPEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFW 430 (601)
T ss_pred hheeeeecccccchhhhHHHHHHHh-ccch-HHhccccc-ChHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHH
Confidence 34444 5999999999999999988 4885 66889994 4555666665 677999999988776555544322 7
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 110 EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 110 ~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
++.++.++.+++... ...++.++..+.|.+++.+..+++..
T Consensus 431 Er~~d~l~~lk~K~q-rtvyRlTlVkg~n~dd~~Ayfnlv~r 471 (601)
T KOG1160|consen 431 ERFLDSLKALKKKQQ-RTVYRLTLVKGWNSDDLPAYFNLVSR 471 (601)
T ss_pred HHHHHHHHHHHHhhc-ceEEEEEEeccccccccHHHHHHHhc
Confidence 888889988887655 78899999999999999999998875
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.07 Score=51.80 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc------CccccHHHHHHHHhcc-CCCCcEEEEeCccc--
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP------TVRKDIEEACFHLSKL-KGLKTLAMTTNGLT-- 72 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP------ll~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-- 72 (298)
+|+|.|-.. ...|+.++...++..+.+.|+..+-..||.- +++++-.+.++.+++. .+.. +.+...|..
T Consensus 11 lRDG~Qs~~-atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~-l~~l~Rg~N~~ 88 (592)
T PRK09282 11 LRDAHQSLL-ATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTP-LQMLLRGQNLV 88 (592)
T ss_pred CCccccccC-CccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCE-EEEEecccccc
Confidence 466654432 4579999999999999999999999998864 6788877777877664 3553 666554421
Q ss_pred ---------hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE--ecCCCHhH
Q 022377 73 ---------LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MRGFNDDE 141 (298)
Q Consensus 73 ---------l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi--~~~~n~~~ 141 (298)
..+.++...++|++.+.|..-. ++ .+.+...++.+++.|. .+.....+ .+-++.+.
T Consensus 89 gy~~ypd~vv~~~v~~A~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~~~ 155 (592)
T PRK09282 89 GYRHYPDDVVEKFVEKAAENGIDIFRIFDAL-ND-----------VRNMEVAIKAAKKAGA-HVQGTISYTTSPVHTIEK 155 (592)
T ss_pred ccccccchhhHHHHHHHHHCCCCEEEEEEec-Ch-----------HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHH
Confidence 2346788888999988887433 32 2467788899999998 77755544 44346677
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++-+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 156 ~~~~a~~l~~~Gad--~I~i~Dt~G~~----~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 156 YVELAKELEEMGCD--SICIKDMAGLL----TPYAAYELVKALKEEV 196 (592)
T ss_pred HHHHHHHHHHcCCC--EEEECCcCCCc----CHHHHHHHHHHHHHhC
Confidence 78888878788875 33444332221 1223456666776665
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.12 Score=50.07 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=108.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCC------ccCccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------ch
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGG------EPTVRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TL 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGG------EPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll 73 (298)
...|+.++...+...+.+.|+..+-..|| =|++..+=.+.++.+++. .+. .+.+...|. .+
T Consensus 21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~-~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNT-PQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCC-eEEEEecCcceeccccCcHHHH
Confidence 45799999999999999999999999877 677877766677766663 345 366666764 22
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEE--EEEEEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVK--VNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~--i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
.+.++...++|++.+.|. |+.+. .+.+...++.+++.|. .+. +.++..+..+.+.+.++++.+.+
T Consensus 100 ~~~v~~a~~~Gid~~rif-d~lnd-----------~~~~~~ai~~ak~~G~-~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVF-DAMND-----------PRNLETALKAVRKVGA-HAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHHHhcCCCEEEEe-eeCCc-----------HHHHHHHHHHHHHcCC-eEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 345777888899999998 44332 3578889999999998 654 44555665677888888888888
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++ .+.+....+.. .+....++...+++.+
T Consensus 167 ~Gad--~i~i~Dt~G~l----~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 167 MGVD--SLCIKDMAGLL----KPYAAYELVSRIKKRV 197 (593)
T ss_pred cCCC--EEEECCCCCCc----CHHHHHHHHHHHHHhc
Confidence 8875 33333332221 1123455666666655
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.1 Score=49.88 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCc--cchHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNG--LTLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG--~ll~~~~~ 78 (298)
+|+|.|.. +..||.++-.++++.+.+.|+..|-+ |=|..++.=.+.++.+.+. .+.. +...+-+ .-++..++
T Consensus 12 LRDG~Q~~--g~~~s~e~K~~ia~~L~~~Gv~~IE~--G~p~~s~~d~~~v~~i~~~~~~~~-i~a~~r~~~~did~a~~ 86 (513)
T PRK00915 12 LRDGEQSP--GASLTVEEKLQIAKQLERLGVDVIEA--GFPASSPGDFEAVKRIARTVKNST-VCGLARAVKKDIDAAAE 86 (513)
T ss_pred CCcCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCChHHHHHHHHHHhhCCCCE-EEEEccCCHHHHHHHHH
Confidence 46666655 35799999999999999999998877 5577777644555666442 2332 4433322 12233455
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+.+++.+.|.+.+...+......++.. ..++.+.+.++.+++.|. .|.+...-....+.+.+.++++.+.+.|++
T Consensus 87 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~ 164 (513)
T PRK00915 87 ALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD-DVEFSAEDATRTDLDFLCRVVEAAIDAGAT 164 (513)
T ss_pred HhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 5557888989999877433222333332 237778889999999998 776665333225667788888888888874
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.11 Score=45.57 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-----CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSG-----VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~-----~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
||+|.|..+. . +.++=.++++.+.+.| ++.|-+. ++.+.+...+.+.+.. +.....++.......+.
T Consensus 8 lRDG~Q~~~~--~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~---s~~~~d~~~v~~~~~~--~~~~~~v~~~~r~~~~d 79 (279)
T cd07947 8 FRDGQQARPP--Y-TVEQIVKIYDYLHELGGGSGVIRQTEFF---LYTEKDREAVEACLDR--GYKFPEVTGWIRANKED 79 (279)
T ss_pred CCCcCCCCCC--C-CHHHHHHHHHHHHHcCCCCCccceEEec---CcChHHHHHHHHHHHc--CCCCCEEEEEecCCHHH
Confidence 7899997533 4 9999999999999999 9999882 5666666666665543 32112344444334567
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhh-hhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCH-----hHHHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKF-EFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFND-----DEICDFVE 147 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~-~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~-----~~i~~i~~ 147 (298)
++...++|++.|.+.+-. ++.+. ..++.. ..++++.+.++.+++.|. .+.+..- .++ ... +-+.++++
T Consensus 80 ie~A~~~g~~~v~i~~s~-S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~-~v~~~~ed~~r-~d~~~~v~~~~~~~~~ 156 (279)
T cd07947 80 LKLVKEMGLKETGILMSV-SDYHIFKKLKMTREEAMEKYLEIVEEALDHGI-KPRCHLEDITR-ADIYGFVLPFVNKLMK 156 (279)
T ss_pred HHHHHHcCcCEEEEEEcC-CHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC-eEEEEEEcccC-CCcccchHHHHHHHHH
Confidence 888889999999998865 44322 233332 237778888888888888 6655442 222 222 24667777
Q ss_pred HHhhCCCe
Q 022377 148 LTRDRPIN 155 (298)
Q Consensus 148 ~~~~~g~~ 155 (298)
.+.+.|++
T Consensus 157 ~~~~~G~~ 164 (279)
T cd07947 157 LSKESGIP 164 (279)
T ss_pred HHHHCCCC
Confidence 77667875
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.2 Score=48.07 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=112.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccc--------h
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT--------L 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l--------l 73 (298)
+|+|.|.. +..|+.++-.++++.+.++|+..|-. |=|...|.-.+.++.+.+. ++....+..-+.. .
T Consensus 9 LRDG~Q~~--g~~~s~eeKl~Ia~~L~~~GVd~IE~--G~p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~ 83 (526)
T TIGR00977 9 LRDGAQRE--GVSFSLEDKIRIAERLDDLGIHYIEG--GWPGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEE 83 (526)
T ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCch
Confidence 46666654 57899999999999999999988776 6788888766677766542 3311233222211 1
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-E---ecCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-V---MRGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i---~~~~n~~~i~~i~~ 147 (298)
+..++.+.+++.+.|.+.+-+.+......++.. ..++.+.+.++.+++.|. .|.+... + ++ .+.+.+.++++
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~-~V~~~~e~f~D~~r-~~~~~l~~~~~ 161 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD-EVIYDAEHFFDGYK-ANPEYALATLA 161 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeeccc-CCHHHHHHHHH
Confidence 345788899999999998877433332333332 237788888999999998 7765443 1 24 56788899999
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
-+.+.|++. +.+...-+. ..+....++.+.+.+.++
T Consensus 162 ~a~~aGad~--i~i~DTvG~----~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 162 TAQQAGADW--LVLCDTNGG----TLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHhCCCCe--EEEecCCCC----cCHHHHHHHHHHHHHhCC
Confidence 988888752 333322211 112234566666666553
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.19 Score=48.80 Aligned_cols=118 Identities=15% Similarity=0.261 Sum_probs=80.9
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCcc----ch----HhhHHHHHHcCCC-eEEEecCCCCHHhhhhhcCCCc--HHHHHHH
Q 022377 47 DIEEACFHLSKLKGLKTLAMTTNGL----TL----ARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRRKG--HEKVMES 115 (298)
Q Consensus 47 ~~~~ii~~~~~~~~~~~v~i~TNG~----ll----~~~~~~l~~~~~~-~v~iSldg~~~~~~~~ir~~~~--~~~v~~~ 115 (298)
.+.++++.+++..+++.+.+ +.|. ++ ++.++.|.+..+. .+.|.+.+.+++.-+.+++... +++.++.
T Consensus 388 ~l~~LLr~l~~l~gvkrv~i-sSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~ 466 (620)
T PRK00955 388 EYLELLRKVRKLPGVKKVFI-RSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKK 466 (620)
T ss_pred HHHHHHHHHhccCCceEEEe-ecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHH
Confidence 47899999988777754545 4442 22 2357777775444 6999999999988888876532 5555555
Q ss_pred HHHHH-HcCCCC--EEEEE-EEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 116 INAAI-EVGYNP--VKVNC-VVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 116 i~~l~-~~g~~~--v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
++.+. +.|+ . +...+ +-.||.+.+++.++++|+.++++. ..+..|.|..+
T Consensus 467 ~~~i~~~~G~-~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PG 521 (620)
T PRK00955 467 FDRINKKLGK-KQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPG 521 (620)
T ss_pred HHHhhhhcCC-CccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCC
Confidence 44444 5676 4 33333 344889999999999999999874 46667778654
|
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.14 Score=49.79 Aligned_cols=152 Identities=13% Similarity=0.186 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEE--EcC------C----c------------------cCc---cccHHHHHHHHhc
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIR--LTG------G----E------------------PTV---RKDIEEACFHLSK 57 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~--~tG------G----E------------------Pll---~~~~~~ii~~~~~ 57 (298)
..-|.|.+.+=++.+.+. |++.+. +.| | . +-+ +..+.++++.+++
T Consensus 400 rSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~ 479 (707)
T PRK01254 400 QSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARD 479 (707)
T ss_pred eeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHh
Confidence 456777777777777642 666655 333 2 2 222 2347899999988
Q ss_pred cCCCCcEEEEeC-cc--ch--HhhHHHHHHcCCC-eEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHc-CCCCEE
Q 022377 58 LKGLKTLAMTTN-GL--TL--ARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEV-GYNPVK 128 (298)
Q Consensus 58 ~~~~~~v~i~TN-G~--ll--~~~~~~l~~~~~~-~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~-g~~~v~ 128 (298)
..|++.+-+.+. -+ .+ ++.++.+.+..+. ++.|-+...++++-+.+++. ..+++..+.++.+++. |. .+.
T Consensus 480 IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk-~q~ 558 (707)
T PRK01254 480 LKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGK-EQY 558 (707)
T ss_pred CCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCC-CeE
Confidence 778764555433 11 11 4568888776665 78888999999888888775 3588888888888764 54 444
Q ss_pred EEE---EEecCCCHhHHHHHHHHHhhCCCee-EEEeeecCC
Q 022377 129 VNC---VVMRGFNDDEICDFVELTRDRPINI-RFIEFMPFD 165 (298)
Q Consensus 129 i~~---vi~~~~n~~~i~~i~~~~~~~g~~~-~~~~~~p~~ 165 (298)
+.+ +-+||.+.+++.++++|++++++.. .+.-|.|..
T Consensus 559 LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP 599 (707)
T PRK01254 559 LIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSP 599 (707)
T ss_pred EEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCC
Confidence 432 3448889999999999999998854 334566654
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.088 Score=49.67 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=76.8
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHH-HHHHHHHcCCCCEEEEE-EEecCCCHhHHHHH---HHHHh
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVME-SINAAIEVGYNPVKVNC-VVMRGFNDDEICDF---VELTR 150 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~-~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i---~~~~~ 150 (298)
.+..+..+|...+.+.+.+.+++.-+.+....+.+.+++ +++.+.+.+. .+.+.+ +-.+|++.+++... ++++.
T Consensus 302 ~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~-~~~~~~i~G~pget~ed~~~t~~~~~~~~ 380 (490)
T COG1032 302 LLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGL-RVKLYFIVGLPGETEEDVKETIELAKFIK 380 (490)
T ss_pred HHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCc-eeeEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 567777788999999999999999989888888999995 9999999998 776665 55577888887776 78888
Q ss_pred hCCCe--eEEEeeecCCCCCCc
Q 022377 151 DRPIN--IRFIEFMPFDGNVWN 170 (298)
Q Consensus 151 ~~g~~--~~~~~~~p~~~~~~~ 170 (298)
+.|.. +....++|..++.+.
T Consensus 381 ~~~~~~~~~~~~~~p~p~t~~~ 402 (490)
T COG1032 381 KLGPKLYVSPSPFVPLPGTPLQ 402 (490)
T ss_pred HhCccceEEEeeeeCCCCCchh
Confidence 88886 677788888776543
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.21 Score=47.85 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCCcEEEEe---C-ccc--h
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTT---N-GLT--L 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~~v~i~T---N-G~l--l 73 (298)
+|+|.|.. ...|+.++-.++++.+.+.|+..|-. |=|...++-.+.++.+.+. .+.. +...+ . +.. .
T Consensus 13 LRDG~Q~~--g~~~s~e~Kl~ia~~L~~~Gvd~IEv--G~p~as~~d~~~~~~i~~~~l~~~~-i~~~~~~~~~~i~~~~ 87 (524)
T PRK12344 13 LRDGAQGE--GISFSVEDKLRIARKLDELGVDYIEG--GWPGSNPKDTEFFKRAKELKLKHAK-LAAFGSTRRAGVSAEE 87 (524)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--cCCcCChhHHHHHHHHHHhCCCCcE-EEEEeeccccCCCccc
Confidence 46666655 47899999999999999999998887 3466667656667766652 1222 32222 1 111 1
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-E---ecCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-V---MRGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i---~~~~n~~~i~~i~~ 147 (298)
+..++.+.+++.+.|.+.+-.-+......++.. ..++.+.+.++.+++.|. .+.+.+. + ++ .+.+.+.++++
T Consensus 88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~-~v~~~~e~~~Da~r-~d~~~l~~~~~ 165 (524)
T PRK12344 88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR-EVIFDAEHFFDGYK-ANPEYALATLK 165 (524)
T ss_pred HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEcccccccccc-CCHHHHHHHHH
Confidence 345788889999999998876322222333322 237888888999999998 7766543 1 23 45566778888
Q ss_pred HHhhCCCe
Q 022377 148 LTRDRPIN 155 (298)
Q Consensus 148 ~~~~~g~~ 155 (298)
.+.+.|++
T Consensus 166 ~~~~~Gad 173 (524)
T PRK12344 166 AAAEAGAD 173 (524)
T ss_pred HHHhCCCC
Confidence 88888875
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.64 Score=41.09 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CC---CC-EEEE-cCCccCcccc------HHHHHHHHhccCCCCcEEEEeCccch
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVT-SG---VD-KIRL-TGGEPTVRKD------IEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~-~~---~~-~v~~-tGGEPll~~~------~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
+-+.......+.|++...++.+.. +. .. .|.+ |-| -||.+. -..|++.+.+...+..+.+.|-.-.+
T Consensus 70 Y~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSG-SFLD~~EVP~e~R~~Il~~is~~~~v~~vvvESRpE~I 148 (358)
T COG1244 70 YPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSG-SFLDPEEVPREARRYILERISENDNVKEVVVESRPEFI 148 (358)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEccc-ccCChhhCCHHHHHHHHHHHhhccceeEEEeecCchhc
Confidence 333333677888887766655443 22 23 4665 444 355432 33777777775456779999998888
Q ss_pred -HhhHHHHHHc--C-CCeEEEecCCCCHHhh-hhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhH---HHHH
Q 022377 74 -ARKLPKLKES--G-LTSVNISLDTLVPAKF-EFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE---ICDF 145 (298)
Q Consensus 74 -~~~~~~l~~~--~-~~~v~iSldg~~~~~~-~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~---i~~i 145 (298)
++.++.+.+. | ...|.|.|.+.++++- +.|..+-+|+..+++++.++++|+ .+....++-| .-..+ |+++
T Consensus 149 ~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~-~vktYlllKP-~FlSE~eAI~D~ 226 (358)
T COG1244 149 REERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGA-KVKTYLLLKP-PFLSEKEAIEDV 226 (358)
T ss_pred CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCC-ceeEEEEecc-cccChHHHHHHH
Confidence 5688888764 3 4569999999877644 566676779999999999999999 7777766665 33333 5555
Q ss_pred HHHHh
Q 022377 146 VELTR 150 (298)
Q Consensus 146 ~~~~~ 150 (298)
+.-+.
T Consensus 227 i~Si~ 231 (358)
T COG1244 227 ISSIV 231 (358)
T ss_pred HHHHH
Confidence 55444
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.74 Score=40.50 Aligned_cols=178 Identities=12% Similarity=0.073 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCC--CcEEEEeCccchHhhHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKLPK 79 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~--~~v~i~TNG~ll~~~~~~ 79 (298)
||+|.|.. +..+|.++-.++++.+.+.|+..|-+. =|-+.+.-.++++.+.+. +. ..+.+..=.......++.
T Consensus 9 lRDG~Q~~--g~~~s~~~Ki~ia~~L~~~Gv~~IE~g--fP~~~~~e~e~~~~i~~~-~~~~~~~~~~al~r~~~~die~ 83 (284)
T cd07942 9 LRDGNQAL--AEPMSVEQKLRFFKLLVKIGFKEIEVG--FPSASQTDFDFVRELIEE-DLIPDDVTIQVLTQAREDLIER 83 (284)
T ss_pred CCCcCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHc-cCCCCCCEEEEEcCCChhhHHH
Confidence 68887766 568999999999999999999988765 399988877888888553 22 012232111112333556
Q ss_pred HHHc--CCC--eEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCC---EEEEEEEec----CCCHhHHHHHH
Q 022377 80 LKES--GLT--SVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNP---VKVNCVVMR----GFNDDEICDFV 146 (298)
Q Consensus 80 l~~~--~~~--~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~---v~i~~vi~~----~~n~~~i~~i~ 146 (298)
..++ +++ .|.+.+-.-+.-...+++.. ...+.+.+.++.+++.|. + ..+.+.+.. ..+.+.+.+++
T Consensus 84 a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~-~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 84 TFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAA-KYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred HHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc-cccCceEEEEECCccCCCCCHHHHHHHH
Confidence 6555 554 58777766322222233322 126777778888888876 3 123333332 14556688888
Q ss_pred HHHhhC---CCe-eEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 147 ELTRDR---PIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 147 ~~~~~~---g~~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+.+.+. |++ +..+.+...-+.. .+....+++..+.+.++
T Consensus 163 ~~~~~~~~~g~~~~~~i~laDTvG~a----~P~~v~~~~~~l~~~~~ 205 (284)
T cd07942 163 EAVIDVWQPTPENKIILNLPATVEVA----TPNVYADQIEWFCRNLS 205 (284)
T ss_pred HHHHHhhcCCCCcceEEEcccccccc----CHHHHHHHHHHHHHhcC
Confidence 877665 332 2234443322211 11234555566665553
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.54 Score=44.59 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc--cC----ccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------ch
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE--PT----VRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TL 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE--Pl----l~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll 73 (298)
...|+.++...++..+.+.|+..|-..||- +- ++.+=.+.++.+++. .+. .+.+...|. .+
T Consensus 21 atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt-~lqmL~Rg~N~vGy~~y~ddvv 99 (499)
T PRK12330 21 ATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNS-RLQMLLRGQNLLGYRHYEDEVV 99 (499)
T ss_pred CccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-eEEEEEcccccCCccCcchhHH
Confidence 467999999999999999999999998876 42 444545666666552 345 377777765 22
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--EEEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~vi~~~~n~~~i~~i~~~~~~ 151 (298)
...++...++|++.+.|. |+.+. .+.+...++.+++.|. .+... +++.+-.+.+.+.++++-+.+
T Consensus 100 ~~fv~~a~~~Gidi~RIf-d~lnd-----------v~nl~~ai~~vk~ag~-~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVF-DALND-----------PRNLEHAMKAVKKVGK-HAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEE-ecCCh-----------HHHHHHHHHHHHHhCC-eEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 346778888899998888 44332 2566667788888887 66444 355665677888888888888
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++ .+.+...-+-. .+....++...+++.+
T Consensus 167 ~Gad--~I~IkDtaGll----~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 167 MGAD--SICIKDMAALL----KPQPAYDIVKGIKEAC 197 (499)
T ss_pred cCCC--EEEeCCCccCC----CHHHHHHHHHHHHHhC
Confidence 8885 33333322210 1123456666777665
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.46 Score=41.65 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-----C-ccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------ch
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-----T-VRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TL 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-----l-l~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll 73 (298)
+..++.++..+++..+.+.|+..|-+.+|-- . +..+-.+.++.+.+. .+.+ +...+.+. ..
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~-l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTP-LQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCc-eehhcccccccCccCCCcHHH
Confidence 5579999999999999999999988875431 1 233334555555542 2232 44444431 13
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE--ecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi--~~~~n~~~i~~i~~~~~~ 151 (298)
.+.++...+.+++.|.|+... ++ ++.+.+.++.+++.|. .+.+.... ....+.+.+.++++.+.+
T Consensus 94 ~~di~~~~~~g~~~iri~~~~-~~-----------~~~~~~~i~~ak~~G~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDAL-ND-----------VRNLEVAIKAVKKAGK-HVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecC-Ch-----------HHHHHHHHHHHHHCCC-eEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 457888888899999997644 21 6789999999999998 77654432 223677889999999999
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++. +.+....+.. .+....++...+.+.+
T Consensus 161 ~Ga~~--i~l~DT~G~~----~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 161 MGADS--ICIKDMAGLL----TPYAAYELVKALKKEV 191 (275)
T ss_pred cCCCE--EEEcCCCCCC----CHHHHHHHHHHHHHhC
Confidence 88752 3333322221 1223455666666655
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.62 Score=43.17 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCC-cEEEEeCccchHhhHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l 80 (298)
+|+|.|.. +..||.|+-.+++..+.++|+..|- .|=|-..+.-.+.++.+....++. ...+.+--...++.++.+
T Consensus 10 LRDG~Q~~--g~~~s~e~Ki~Ia~~Ld~lGv~~IE--~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~ 85 (409)
T COG0119 10 LRDGEQAP--GVSFSVEEKIRIAKALDDLGVDYIE--AGFPVASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEAL 85 (409)
T ss_pred CCcCCcCC--CCcCCHHHHHHHHHHHHHcCCCEEE--EeCCcCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHH
Confidence 45655544 6789999999999999999977655 466777777777777766322330 011111111224578999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
+.++.+.|.+-+.+.+--...+++.. ..++++.+.++.+++.|+ .+.... ..++ .+.+.+.++++.+...|+.
T Consensus 86 ~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~-~~~~~~Ed~~r-t~~~~l~~~~~~~~~~ga~-- 161 (409)
T COG0119 86 LEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGL-EVRFSAEDATR-TDPEFLAEVVKAAIEAGAD-- 161 (409)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeecccc-CCHHHHHHHHHHHHHcCCc--
Confidence 99999999998887433222233322 238888999999999998 776544 3344 6788899999988877764
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 158 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+...-+. ..+..+.++.+.+.+..+
T Consensus 162 ~i~l~DTvG~----~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 162 RINLPDTVGV----ATPNEVADIIEALKANVP 189 (409)
T ss_pred EEEECCCcCc----cCHHHHHHHHHHHHHhCC
Confidence 2333322111 122345677777777664
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.98 Score=43.00 Aligned_cols=175 Identities=16% Similarity=0.116 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccC--------CCCcEEEEeCccch
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--------GLKTLAMTTNGLTL 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~--------~~~~v~i~TNG~ll 73 (298)
+|+|.|.. +..++.++-.++++.+.+.|+..|-. |=|-..++-.+.++.+.+.. ++. ..+.+=+...
T Consensus 92 LRDGeQ~~--gv~fs~eeKi~Ia~~L~~~GVd~IEv--G~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~-~~i~a~~R~~ 166 (503)
T PLN03228 92 LRDGEQSP--GGSLTPPQKLEIARQLAKLRVDIMEV--GFPGSSEEEFEAVKTIAKTVGNEVDEETGYV-PVICGIARCK 166 (503)
T ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHhcccccccccccc-eEEeeecccC
Confidence 45655554 56799999999999999999987766 44888887666677665421 111 2222112122
Q ss_pred HhhHHHHHHc----CCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCC-EEEEE-EEecCCCHhHHHHH
Q 022377 74 ARKLPKLKES----GLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNP-VKVNC-VVMRGFNDDEICDF 145 (298)
Q Consensus 74 ~~~~~~l~~~----~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~-v~i~~-vi~~~~n~~~i~~i 145 (298)
.+.++...++ +.+.|.+.+-.-+.....+++.. ..++.+.+.++.+++.|. . +.+.+ -.++ .+.+.+.++
T Consensus 167 ~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~-~~v~f~~EDa~R-td~efl~~~ 244 (503)
T PLN03228 167 KRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGF-HDIQFGCEDGGR-SDKEFLCKI 244 (503)
T ss_pred HhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-ceEEeccccccc-cCHHHHHHH
Confidence 2334444443 67788888777422222333332 237888889999999987 5 44444 2223 445667888
Q ss_pred HHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 146 VELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 146 ~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
++.+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 245 ~~~a~~~Gad--~I~l~DTvG~~----tP~~v~~lV~~l~~~~~ 282 (503)
T PLN03228 245 LGEAIKAGAT--SVGIADTVGIN----MPHEFGELVTYVKANTP 282 (503)
T ss_pred HHHHHhcCCC--EEEEecCCCCC----CHHHHHHHHHHHHHHhc
Confidence 8888888875 23333322211 11234556666665553
|
|
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.6 Score=37.15 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccchH---------hhHHHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTLA---------RKLPKLK 81 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll~---------~~~~~l~ 81 (298)
+-+++..+..+++.+..+ +..+.|.||--.+.|. +.+.++.++++ ++ .+.|-|++++ +.++..+
T Consensus 7 kgl~~~~~~d~Le~~g~y-ID~lKfg~Gt~~l~~~~~l~eki~la~~~-~V---~v~~GGtl~E~~~~q~~~~~Yl~~~k 81 (237)
T TIGR03849 7 KGLPPKFVEDYLKVCGDY-ITFVKFGWGTSALIDRDIVKEKIEMYKDY-GI---KVYPGGTLFEIAHSKGKFDEYLNECD 81 (237)
T ss_pred CCCCHHHHHHHHHHhhhh-eeeEEecCceEeeccHHHHHHHHHHHHHc-CC---eEeCCccHHHHHHHhhhHHHHHHHHH
Confidence 346888888888877665 6789999999999986 66999999886 65 4677787653 3456888
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecC-----CCHhHHHHHHHHHhhCCCee
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG-----FNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~-----~n~~~i~~i~~~~~~~g~~~ 156 (298)
+.|++.|-|| ||.-+ -+.+.-++.|+.+++.|+ .+...+=.... ...++..+.++...+.|+..
T Consensus 82 ~lGf~~IEiS-~G~~~---------i~~~~~~rlI~~~~~~g~-~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ 150 (237)
T TIGR03849 82 ELGFEAVEIS-DGSME---------ISLEERCNLIERAKDNGF-MVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADY 150 (237)
T ss_pred HcCCCEEEEc-CCccC---------CCHHHHHHHHHHHHhCCC-eEeccccccCCcccccCCHHHHHHHHHHHHHCCCcE
Confidence 8999999999 55321 246778889999999888 44333211110 12233333334446678865
Q ss_pred EEEeeecC
Q 022377 157 RFIEFMPF 164 (298)
Q Consensus 157 ~~~~~~p~ 164 (298)
..++-.-.
T Consensus 151 ViiEarEs 158 (237)
T TIGR03849 151 VIIEGRES 158 (237)
T ss_pred EEEeehhc
Confidence 55544333
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=95.22 E-value=1 Score=44.09 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCC---c-EEEEeCccchHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLK---T-LAMTTNGLTLAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~---~-v~i~TNG~ll~~ 75 (298)
+|+|.|.. ...|+.|+-.++++.+.+.|+..|-. |=|...|+=.+.++.+.+. .++. . ..|..=+....+
T Consensus 94 LRDGeQ~~--g~~~s~eeKl~Ia~~L~~lGVd~IEv--GfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~ 169 (632)
T PLN02321 94 LRDGEQSP--GATLTSKEKLDIARQLAKLGVDIIEA--GFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKK 169 (632)
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHH
Confidence 56766655 45599999999999999999988877 6788887644446666442 1111 0 112222222233
Q ss_pred hHHHHHHc----CCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHH
Q 022377 76 KLPKLKES----GLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVEL 148 (298)
Q Consensus 76 ~~~~l~~~----~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~ 148 (298)
.++...++ ....|.+.+-..+--....++.. ..++.+.+.++.+++.|...+.+.+- ..+ .+.+.+.++++.
T Consensus 170 dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~r-td~d~l~~~~~~ 248 (632)
T PLN02321 170 DIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGR-SDPEFLYRILGE 248 (632)
T ss_pred hHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCC-CCHHHHHHHHHH
Confidence 34444443 22357777655321122223221 22677777888888887622444432 223 456677788887
Q ss_pred HhhCCCe
Q 022377 149 TRDRPIN 155 (298)
Q Consensus 149 ~~~~g~~ 155 (298)
+.+.|++
T Consensus 249 a~~aGa~ 255 (632)
T PLN02321 249 VIKAGAT 255 (632)
T ss_pred HHHcCCC
Confidence 7777764
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.8 Score=41.36 Aligned_cols=147 Identities=17% Similarity=0.107 Sum_probs=91.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCc--cchHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNG--LTLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG--~ll~~~~~ 78 (298)
+|+|.|.. +..|+.++-.++++.+.+.|+..|-. |=|-..+.=.+.++.+.+. .+. .+...+-+ ..++..++
T Consensus 9 LRDG~Q~~--g~~~s~e~K~~ia~~L~~~GV~~IEv--G~p~~s~~d~e~v~~i~~~~~~~-~i~al~r~~~~did~a~~ 83 (494)
T TIGR00973 9 LRDGEQSP--GASLTVEEKLQIALALERLGVDIIEA--GFPVSSPGDFEAVQRIARTVKNP-RVCGLARCVEKDIDAAAE 83 (494)
T ss_pred CCccCcCC--CCCcCHHHHHHHHHHHHHcCCCEEEE--ECCCCCHHHHHHHHHHHHhCCCC-EEEEEcCCCHHhHHHHHH
Confidence 46666655 45699999999999999999988764 4455544333444655432 222 23332221 11223344
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCCe
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+..++.+.|.+.+-..+.....+++.. ...+.+.+.++.+++.|. .+.+..- .++ .+.+.+.++++.+.+.|++
T Consensus 84 al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~f~~Ed~~r-~d~~~l~~~~~~~~~~Ga~ 161 (494)
T TIGR00973 84 ALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD-DVEFSCEDAGR-TEIPFLARIVEAAINAGAT 161 (494)
T ss_pred hccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEcCCCCC-CCHHHHHHHHHHHHHcCCC
Confidence 4555577888888877432222233322 126777788889999888 6666653 233 5667788888888888874
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.41 Score=40.92 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccchH---------hhHHHHHHc
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTLA---------RKLPKLKES 83 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll~---------~~~~~l~~~ 83 (298)
|++..+..+++.+..+ +..+.|.+|--.+.|. +.+.++.++++ + |.+.|-|+++. +.++.+++.
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt~~l~~~~~l~eki~l~~~~-g---V~v~~GGtl~E~a~~q~~~~~yl~~~k~l 96 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGTSALYPEEILKEKIDLAHSH-G---VYVYPGGTLFEVAYQQGKFDEYLEECKEL 96 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTGGGGSTCHHHHHHHHHHHCT-T----EEEE-HHHHHHHHHTT-HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCceeeecCHHHHHHHHHHHHHc-C---CeEeCCcHHHHHHHhcChHHHHHHHHHHc
Confidence 8999999999987766 7899999999999987 77999999986 5 55789998753 457888889
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--------hHHHHHHHHHhhCCCe
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--------DEICDFVELTRDRPIN 155 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--------~~i~~i~~~~~~~g~~ 155 (298)
|++.|-|| ||.-+ -+.+.-.+.|+.+++.|+ .|... +.+ .+. +++.+.++...+.|..
T Consensus 97 Gf~~IEiS-dGti~---------l~~~~r~~~I~~~~~~Gf-~v~~E--vG~-K~~~~~~~~~~~~~i~~~~~dLeAGA~ 162 (244)
T PF02679_consen 97 GFDAIEIS-DGTID---------LPEEERLRLIRKAKEEGF-KVLSE--VGK-KDPESDFSLDPEELIEQAKRDLEAGAD 162 (244)
T ss_dssp T-SEEEE---SSS------------HHHHHHHHHHHCCTTS-EEEEE--ES--SSHHHHTT--CCHHHHHHHHHHHHTEC
T ss_pred CCCEEEec-CCcee---------CCHHHHHHHHHHHHHCCC-EEeec--ccC-CCchhcccCCHHHHHHHHHHHHHCCCC
Confidence 99999999 66322 135667788999999988 54333 333 222 2333333333445776
Q ss_pred eEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 156 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
...++-.-.|........-.-..++++.|....
T Consensus 163 ~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 163 KVIIEARESGKGGIYDNDGEVRTDLVEKIIERL 195 (244)
T ss_dssp EEEE--TTT--STTB-TTS-B-HHHHHHHHTTS
T ss_pred EEEEeeeccCCCCccCCCCCccHHHHHHHHHhC
Confidence 555544433322222211122345555665554
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.39 Score=42.01 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=85.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCccCccccHH-HHHHHHhcc-CCCCcEEEEeCccch---HhhHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKDIE-EACFHLSKL-KGLKTLAMTTNGLTL---ARKLPKLK 81 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGEPll~~~~~-~ii~~~~~~-~~~~~v~i~TNG~ll---~~~~~~l~ 81 (298)
.-.+|+||+.+-..+..+.|...|+++ .|.|.+.++.. ++++.+++. .++- +.++|.+... .+++..+.
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~i-v~~Ttg~~~~~~~~~R~~~v~ 98 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLI-VQPTTGGGGGPDPEERLAHVE 98 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSE-EEEESSTTTTSGHHHHCTHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeE-EEeCCCCCCCCCHHHHHHHHH
Confidence 345899999988888888898877775 48899999855 999999997 6884 8888887433 23444444
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
....+..++++-+.+-...+.. -..+...+.+.++.+++.|+ .+++.+ ++...+..+..++.+ |+
T Consensus 99 ~~~pd~asl~~gs~n~~~~~~~-~~n~~~~~~~~~~~~~e~Gi-~pe~ev-----~d~~~l~~~~~l~~~-G~ 163 (272)
T PF05853_consen 99 AWKPDMASLNPGSMNFGTRDRV-YINTPADARELARRMRERGI-KPEIEV-----FDPGHLRNARRLIEK-GL 163 (272)
T ss_dssp HH--SEEEEE-S-EEESGGCSE-E---HHHHHHHHHHHHHTT--EEEEEE-----SSHHHHHHHHHHHHT-TS
T ss_pred hcCCCeEEecccccccccCCce-ecCCHHHHHHHHHHHHHcCC-eEEEEE-----EcHHHHHHHHHHHHC-CC
Confidence 3357777776655432211111 12458899999999999999 776655 577788888777665 55
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=3.2 Score=39.10 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhcc-CCCCcEEEEeCccc-----------h
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLT-----------L 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-----------l 73 (298)
...|+.+++..+...+.+.|+..+-..||--+ ++.+=.+-++.+++. ++.. +.+..-|.. .
T Consensus 29 atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~-lqmLlRG~n~vgy~~ypddvv 107 (468)
T PRK12581 29 ATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR-LQMLLRGQNLLGYRHYADDIV 107 (468)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCc-eeeeeccccccCccCCcchHH
Confidence 45599999999999999999999999988633 223333455555442 3443 555555632 1
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--EEEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~vi~~~~n~~~i~~i~~~~~~ 151 (298)
...++...+.|++.+.|- |..+ ..+.+...++.+++.|. .+.+. .+..|.++.+.+.++++.+.+
T Consensus 108 ~~fv~~a~~~Gidi~Rif-d~ln-----------d~~n~~~ai~~ak~~G~-~~~~~i~yt~sp~~t~~y~~~~a~~l~~ 174 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIF-DALN-----------DPRNIQQALRAVKKTGK-EAQLCIAYTTSPVHTLNYYLSLVKELVE 174 (468)
T ss_pred HHHHHHHHHCCCCEEEEc-ccCC-----------CHHHHHHHHHHHHHcCC-EEEEEEEEEeCCcCcHHHHHHHHHHHHH
Confidence 234777788899977765 5443 35678889999999998 75444 455565667778888888888
Q ss_pred CCCe
Q 022377 152 RPIN 155 (298)
Q Consensus 152 ~g~~ 155 (298)
.|++
T Consensus 175 ~Gad 178 (468)
T PRK12581 175 MGAD 178 (468)
T ss_pred cCCC
Confidence 8875
|
|
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.9 Score=37.32 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCcc---ccHHHHHHHHhcc-CCCCcEEEEeCccchH-hhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVR---KDIEEACFHLSKL-KGLKTLAMTTNGLTLA-RKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~---~~~~~ii~~~~~~-~~~~~v~i~TNG~ll~-~~~~~l~~~~~ 85 (298)
..+.++.-.. .+++.|+..|.+|- -+-|-. .++.+-++++++. ..+. |...|--+.=+ +.++.+..+|+
T Consensus 140 Dp~EPeNTAe---AIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~il-vE~L~pDF~Gd~~~Ve~va~SGL 215 (360)
T KOG2672|consen 140 DPNEPENTAE---AIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEIL-VECLTPDFRGDLKAVEKVAKSGL 215 (360)
T ss_pred CCCCcccHHH---HHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccc-hhhcCccccCchHHHHHHHhcCc
Confidence 3444554444 44567888999874 333332 3477889988874 2332 44434332222 46899999999
Q ss_pred CeEEEecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCE--EEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE-ee
Q 022377 86 TSVNISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRDRPINIRFI-EF 161 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v--~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~-~~ 161 (298)
|...-.+.+. ++....+|.. .+|..-+..++.+++..- .+ +..+++.-|++++++.+.++-+...++++... +|
T Consensus 216 DV~AHNvETV-e~Ltp~VRD~RA~yrQSL~VLk~aK~~~P-~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqy 293 (360)
T KOG2672|consen 216 DVYAHNVETV-EELTPFVRDPRANYRQSLSVLKHAKEVKP-GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQY 293 (360)
T ss_pred cceecchhhH-HhcchhhcCcccchHHhHHHHHHHHhhCC-CceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccc
Confidence 9988888886 5666666643 459999999999998743 32 23334445688999999999999999876444 66
Q ss_pred ecCCCC
Q 022377 162 MPFDGN 167 (298)
Q Consensus 162 ~p~~~~ 167 (298)
|+....
T Consensus 294 m~ptkr 299 (360)
T KOG2672|consen 294 MQPTKR 299 (360)
T ss_pred cCCccc
Confidence 654433
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=93.05 E-value=5 Score=34.07 Aligned_cols=115 Identities=6% Similarity=0.003 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
+.-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++...+ .+.+-++ .-.+.++.+.++|.+.|.|.
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG-p~~i~~i~~~~~~-DvHLMv~--~P~~~i~~~~~aGad~It~H 98 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG-AIAIKQFPTHCFK-DVHLMVR--DQFEVAKACVAAGADIVTLQ 98 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC-HHHHHHhCCCCCE-EEEeccC--CHHHHHHHHHHhCCCEEEEc
Confidence 44566777888888888877764 354 432221 1444444432233 2443222 13457999999999998888
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
..+. ....+.|+.+++.|. ++....++.|+...+.++.+++.+
T Consensus 99 ~Ea~--------------~~~~~~l~~Ik~~g~-~~kaGlalnP~Tp~~~i~~~l~~v 141 (228)
T PRK08091 99 VEQT--------------HDLALTIEWLAKQKT-TVLIGLCLCPETPISLLEPYLDQI 141 (228)
T ss_pred ccCc--------------ccHHHHHHHHHHCCC-CceEEEEECCCCCHHHHHHHHhhc
Confidence 7752 135567788889998 888899999976666676666543
|
|
| >PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.023 Score=43.57 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=43.7
Q ss_pred CCccccCCCCeEEEecccceeecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCcccccccccccccccc
Q 022377 220 MTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297 (298)
Q Consensus 220 ~~~~~C~~~~~~~I~~dG~v~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (298)
.....|..+....+++.|...||...++.+ -..++|+|...-|.+.- .--|.-|..| |.|||
T Consensus 55 ~~~~~CtPWg~pt~n~~Gwq~PCYLl~egy-----------~~tfkeLme~t~We~Yg---~g~~prC~~C--m~hcG 116 (138)
T PF11946_consen 55 NRDYECTPWGNPTRNPFGWQKPCYLLNEGY-----------AGTFKELMETTDWEKYG---VGRDPRCANC--MVHCG 116 (138)
T ss_pred CCCCcccCCCCCccCccccccCCEEecCcc-----------hhHHHHHHHCCChHhhC---CCCCCCHHHH--HHHhc
Confidence 334569999999999999999998665332 24688888888887765 2233355555 66666
|
It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins. |
| >smart00876 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.93 Score=32.71 Aligned_cols=84 Identities=27% Similarity=0.353 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCccCccccHHHHHHHHhccCCC--CcEEEEeCccchHhhH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKL 77 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~--~~v~i~TNG~ll~~~~ 77 (298)
.|.+|..+......++.+++.+++.-+.- +.-..|.++||++.+.++.....-.+-.. .+ ....++|+|....+.+
T Consensus 6 ~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan-~~~~G~~~lt~~g~~~~~d~ 84 (94)
T smart00876 6 RPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGAN-SIFGGDKYLTTSGPRSADDV 84 (94)
T ss_pred ccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCc-eeeeCCccccCCCcCcHHHH
Confidence 36777666543367999999999886544 33358889999998888755332121111 11 1115678887776656
Q ss_pred HHHHHcCC
Q 022377 78 PKLKESGL 85 (298)
Q Consensus 78 ~~l~~~~~ 85 (298)
+.+.+.|.
T Consensus 85 ~~i~~~g~ 92 (94)
T smart00876 85 AMLEKLGL 92 (94)
T ss_pred HHHHHcCC
Confidence 66665553
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. |
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=91.60 E-value=9.3 Score=37.04 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCC---C-cEEEEeCc-cc-hHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL---K-TLAMTTNG-LT-LAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~---~-~v~i~TNG-~l-l~~ 75 (298)
+|+|.|.. +..++.++=.++++.+.+.|+..|-.. =|-+.+.-.++++.+.+. ++ . .+...+-. .- ++.
T Consensus 38 LRDGeQ~~--gv~~s~~~Ki~ia~~L~~~GV~~IE~G--fP~~s~~e~e~v~~i~~~-~~~~~~~~i~~l~r~~~~di~~ 112 (552)
T PRK03739 38 LRDGNQAL--IEPMSPERKLRMFDLLVKIGFKEIEVG--FPSASQTDFDFVRELIEE-GLIPDDVTIQVLTQAREHLIER 112 (552)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEE--CCCcChHHHHHHHHHHHh-cCCCCCCEEEEEeccchhHHHH
Confidence 56666654 568999999999999999999877665 398988877888887553 22 1 12211111 11 122
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCC--CEEEEEEEecC----CCHhHHHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYN--PVKVNCVVMRG----FNDDEICDFVE 147 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~--~v~i~~vi~~~----~n~~~i~~i~~ 147 (298)
.++.+...+...|.+.+-.-+.-...+++.. ...+.+.+.++.++++|.. ...+.+.+... .+.+.+.++++
T Consensus 113 a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~ 192 (552)
T PRK03739 113 TFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCD 192 (552)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHH
Confidence 3334434444568888777432222233322 1267777788888877641 11244444432 34566777777
Q ss_pred HHhh
Q 022377 148 LTRD 151 (298)
Q Consensus 148 ~~~~ 151 (298)
.+.+
T Consensus 193 ~a~~ 196 (552)
T PRK03739 193 AVID 196 (552)
T ss_pred HHHH
Confidence 7655
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=15 Score=35.85 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=102.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhcc-CCCCcEEEEeCccch-----------
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLTL----------- 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll----------- 73 (298)
...|+.+++..++..+.+.|+..+-+.||--| ++-+=++.++.+++. ++.. +.+..-|..+
T Consensus 20 atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~-lqmL~Rg~N~vGy~~~~d~vv 98 (596)
T PRK14042 20 ATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQ-LSMLLRGQNLLGYRNYADDVV 98 (596)
T ss_pred hcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCc-eEEEeccccccccccCChHHH
Confidence 45799999999999999999999999988755 233334555555542 3453 6666644322
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~i~~i~~~~~~ 151 (298)
...++...+.|++.+.|- |+.+ ..+.....++.+++.|. .+...+ +..+-++.+.+.++++.+.+
T Consensus 99 ~~~v~~a~~~Gidv~Rif-d~ln-----------d~~n~~~~i~~~k~~G~-~~~~~i~yt~sp~~t~e~~~~~ak~l~~ 165 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVF-DALN-----------DARNLKVAIDAIKSHKK-HAQGAICYTTSPVHTLDNFLELGKKLAE 165 (596)
T ss_pred HHHHHHHHHcCCCEEEEc-ccCc-----------chHHHHHHHHHHHHcCC-EEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 125677788899977764 5543 24567778999999998 776664 44555677888888888888
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++ .+.+....+.. .+....++...+++.+
T Consensus 166 ~Gad--~I~IkDtaG~l----~P~~v~~lv~alk~~~ 196 (596)
T PRK14042 166 MGCD--SIAIKDMAGLL----TPTVTVELYAGLKQAT 196 (596)
T ss_pred cCCC--EEEeCCcccCC----CHHHHHHHHHHHHhhc
Confidence 8885 33333332210 1123455666666654
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=90.81 E-value=22 Score=37.74 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=103.5
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCEEEEcCCc------cCccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------
Q 022377 12 PQLLSLNEILRLAYLFVTS--GVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGL----------- 71 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~--~~~~v~~tGGE------Pll~~~~~~ii~~~~~~-~~~~~v~i~TNG~----------- 71 (298)
...|+.++...+...+.+. |+..+-..||- ++++.+=.+.++.+++. .+.. +.+..-|.
T Consensus 549 atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~-~q~l~Rg~n~vgy~~yp~~ 627 (1146)
T PRK12999 549 ATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVL-FQMLLRGSNAVGYTNYPDN 627 (1146)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCe-EEEEecccccccccCCCch
Confidence 5679999999999999999 99999988873 66666655666666552 3453 66666653
Q ss_pred chHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-------c-CCCHhHHH
Q 022377 72 TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-------R-GFNDDEIC 143 (298)
Q Consensus 72 ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-------~-~~n~~~i~ 143 (298)
...+.++...++|++.+.|. |+.+. .+.+...++.+++.|. ...+.+.++ + .++.+.+.
T Consensus 628 v~~~~i~~a~~~Gid~~rif-d~lnd-----------~~~~~~~i~~vk~~g~-~~~~~i~ytg~~~d~~~~~~~~~~~~ 694 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIF-DSLNW-----------VENMRVAIDAVRETGK-IAEAAICYTGDILDPARAKYDLDYYV 694 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEe-ccCCh-----------HHHHHHHHHHHHHcCC-eEEEEEEEEecCCCCCCCCCCHHHHH
Confidence 22345788889999999997 55432 3456777888888886 555555555 1 14667777
Q ss_pred HHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 144 DFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 144 ~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
++++-+.+.|++ .+.+....+- . .+....++...+++.+
T Consensus 695 ~~a~~l~~~Ga~--~i~ikDt~G~-l---~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 695 DLAKELEKAGAH--ILAIKDMAGL-L---KPAAAYELVSALKEEV 733 (1146)
T ss_pred HHHHHHHHcCCC--EEEECCccCC-C---CHHHHHHHHHHHHHHc
Confidence 888878888875 3333333221 0 1123456666676655
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=6 Score=37.16 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred HhCCCCEEEEcCC--------ccCccccHHHHHHHHhccCCCCcEEEEeCccchHh-------hHHHHHHcCCCeEEEec
Q 022377 28 VTSGVDKIRLTGG--------EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLAR-------KLPKLKESGLTSVNISL 92 (298)
Q Consensus 28 ~~~~~~~v~~tGG--------EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~-------~~~~l~~~~~~~v~iSl 92 (298)
...|...|.+.|. .++-..++.+.++++++. |.+ +.+++|....++ .++.+.+.++|.|.|+
T Consensus 20 i~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~-g~k-vyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~- 96 (443)
T PRK15452 20 FAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL-GKK-FYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMS- 96 (443)
T ss_pred HHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc-CCE-EEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEc-
Confidence 4578888888442 244445688999999884 885 999999755432 2567778899999998
Q ss_pred CCCCHHhhhhhcCC-------CcH---HHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 93 DTLVPAKFEFLTRR-------KGH---EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 93 dg~~~~~~~~ir~~-------~~~---~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
+......++.. .++ -.--.+++.+.+.|+. ++|+.+..|.++|.+|.+-.
T Consensus 97 ---d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~----rvvLSrELsl~EI~~i~~~~ 156 (443)
T PRK15452 97 ---DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLT----RVILSRELSLEEIEEIRQQC 156 (443)
T ss_pred ---CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCc----EEEECCcCCHHHHHHHHhhC
Confidence 23323222221 011 1123466778888882 55888878889999887544
|
|
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=13 Score=33.58 Aligned_cols=140 Identities=12% Similarity=-0.008 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCC---C-cEEEEeCccc--hHhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL---K-TLAMTTNGLT--LARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~---~-~v~i~TNG~l--l~~~~~~l~~~~~ 85 (298)
+..||.++=.++...+.++|+..|-. |=|-...+-.+.++.+.+. +. . .+...+-+.- ++..++.....+.
T Consensus 48 Gv~fs~eeKl~IA~~L~~lGVd~IEv--G~Pa~s~~e~e~ir~I~~~-~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~ 124 (333)
T PRK14847 48 IEPMDGARKLRLFEQLVAVGLKEIEV--AFPSASQTDFDFVRKLIDE-RRIPDDVTIEALTQSRPDLIARTFEALAGSPR 124 (333)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEe--eCCCCCHHHHHHHHHHHHh-CCCCCCcEEEEEecCcHHHHHHHHHHhCCCCC
Confidence 45799999999999999999887654 5677777767777777653 31 1 1333333311 1234444444455
Q ss_pred CeEEEecCCCCHHhhhhhcCCC--cHHHHHHHHHHHHHcCCC----CEEEEEEEecC--CCHhHHHHHHHHHhh-CCC
Q 022377 86 TSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYN----PVKVNCVVMRG--FNDDEICDFVELTRD-RPI 154 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~----~v~i~~vi~~~--~n~~~i~~i~~~~~~-~g~ 154 (298)
..|.+++-+-+-....+++... -.+.+.+.++.+++.+.. .+.+.+..-.. ...+.+.++++.+.+ .|.
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhCC
Confidence 6799998874222222333221 166677788888887430 23344443321 234556667776533 354
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=90.57 E-value=12 Score=36.38 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccC----CCCcEE-EEeCccc-hHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK----GLKTLA-MTTNGLT-LAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~----~~~~v~-i~TNG~l-l~~ 75 (298)
||+|.|.. ...|+.++=.++++.+.+.|+..|-.. =|-..+.=.+.+..+.+.. +.. +. +.-|-.- ++.
T Consensus 34 LRDG~Q~~--g~~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp~~s~~D~e~v~~i~~~~l~~~~~~-i~al~~~~~~did~ 108 (564)
T TIGR00970 34 LRDGNQAL--PDPMSPARKRRYFDLLVRIGFKEIEVG--FPSASQTDFDFVREIIEQGAIPDDVT-IQVLTQSREELIER 108 (564)
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHhcCCCCCcE-EEEEcCCchhhHHH
Confidence 56766664 567999999999999999999877754 4444443344555554421 221 22 2222111 223
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCC------EEEEEEEecC----CCHhHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNP------VKVNCVVMRG----FNDDEIC 143 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~------v~i~~vi~~~----~n~~~i~ 143 (298)
.++.+...+...|.+.+-+-+.-....++.. ...+.+.+.++.+++++. . ..+.+.+... .+.+.+.
T Consensus 109 a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~-~~~~~~~~~~~v~f~~Ed~~r~d~~~l~ 187 (564)
T TIGR00970 109 TFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTK-QAAKYPGTQWRFEYSPESFSDTELEFAK 187 (564)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc-cccccccceEEEEEecccCCCCCHHHHH
Confidence 3444444444568888776322222223322 126677777777887764 2 1223444432 3567788
Q ss_pred HHHHHHhhCCC
Q 022377 144 DFVELTRDRPI 154 (298)
Q Consensus 144 ~i~~~~~~~g~ 154 (298)
++++.+.+.|.
T Consensus 188 ~~~~~a~~ag~ 198 (564)
T TIGR00970 188 EVCEAVKEVWA 198 (564)
T ss_pred HHHHHHHHhCC
Confidence 88888888875
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2 | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.34 Score=34.96 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccc-------
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT------- 72 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l------- 72 (298)
+|.+|.-+ .+...++.+++.+++..+.- +.-..|.++|||+....++..+... .+. .++.+.+++
T Consensus 6 ~P~~Gtpl-~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~----sg~--n~~~~G~ylt~~g~~~ 78 (93)
T PF06968_consen 6 RPIPGTPL-EDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFM----SGA--NSIMVGGYLTTSGNRS 78 (93)
T ss_dssp ---TTSTT-TTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHC----CT----EEE-CSBTSSSCTSH
T ss_pred EeCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHh----ccc--ceeEECCccccCCCCC
Confidence 46666666 56778999999999886544 3345899999998877775553222 233 344455543
Q ss_pred hHhhHHHHHHcCC
Q 022377 73 LARKLPKLKESGL 85 (298)
Q Consensus 73 l~~~~~~l~~~~~ 85 (298)
.++.++.+.+.|.
T Consensus 79 ~~~d~~~i~~lG~ 91 (93)
T PF06968_consen 79 VDEDIEMIEKLGL 91 (93)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCC
Confidence 3445666666553
|
8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=89.46 E-value=2.1 Score=38.13 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-+-+.+..+. +..+...+
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvp-vi~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVP-VFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCC-EEEEeccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999977 99 777665 44555544432 1342 44444333343 35566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 130 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 130 (298)
.|.+.+.+.--. |- ..+-+.+++-.+.+.++ ++ ++.+.
T Consensus 102 ~Gad~vlv~~P~-----y~----~~~~~~l~~yf~~va~a~~~l-Pv~iY 141 (309)
T cd00952 102 LGADGTMLGRPM-----WL----PLDVDTAVQFYRDVAEAVPEM-AIAIY 141 (309)
T ss_pred hCCCEEEECCCc-----CC----CCCHHHHHHHHHHHHHhCCCC-cEEEE
Confidence 899988887432 11 12347777777777764 36 66553
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.6 Score=37.23 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEE
Q 022377 8 LTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 67 (298)
Q Consensus 8 ~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~ 67 (298)
..+....++.+++.+++-++.+.|...|.+-||+|++...-.+-++.+.+. |+. +.+.
T Consensus 58 kr~g~~~~~q~eIn~~lv~~a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~-gI~-~eVV 115 (244)
T COG0007 58 KRPGGHSKPQDEINALLVELAREGKRVVRLKGGDPYIFGRGGEEIEALAEA-GIE-FEVV 115 (244)
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCeecCcHHHHHHHHHc-CCc-eEEe
Confidence 344446799999999998888889889999999999999988888888885 986 7775
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=89.14 E-value=12 Score=31.32 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccchH----hhHHH
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLTLA----RKLPK 79 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~ll~----~~~~~ 79 (298)
+.+-=+...|.+++.++++++.++++..|++ +|.+..+++...+..++. +..+.+ |.... ..++.
T Consensus 7 D~t~L~p~~t~~~i~~lc~~A~~~~~~avcv-------~p~~v~~a~~~l~~~~v~-v~tVigFP~G~~~~~~K~~E~~~ 78 (211)
T TIGR00126 7 DHTALKADTTEEDIITLCAQAKTYKFAAVCV-------NPSYVPLAKELLKGTEVR-ICTVVGFPLGASTTDVKLYETKE 78 (211)
T ss_pred eccCCCCCCCHHHHHHHHHHHHhhCCcEEEe-------CHHHHHHHHHHcCCCCCe-EEEEeCCCCCCCcHHHHHHHHHH
Confidence 3444567899999999999999999988887 567776665543323554 554432 33321 13566
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
..+.|.+.|-+-++-. .+. .+.++.+.+-|+.+.+. |. ++++-.-... .+.+++....+.+.+.|.++.
T Consensus 79 Av~~GAdEiDvv~n~g------~l~-~g~~~~v~~ei~~i~~~~~g~-~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfv 149 (211)
T TIGR00126 79 AIKYGADEVDMVINIG------ALK-DGNEEVVYDDIRAVVEACAGV-LLKVIIETGL-LTDEEIRKACEICIDAGADFV 149 (211)
T ss_pred HHHcCCCEEEeecchH------hhh-CCcHHHHHHHHHHHHHHcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEE
Confidence 6777999888887642 111 25688888888888874 56 6666332222 566788899999999998743
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.39 E-value=1 Score=38.00 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
..|++||+..++.+..+.|-..+.+.-|+|.++.-+.+=++.+.+. |+. +.++-.=+.+.-....| . +.+.+
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~-gI~-yevvPGVss~~AAAA~L-----~-~ELT~ 128 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEAL-GIP-YEVVPGVSSFAAAAAAL-----G-IELTV 128 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHHHHc-CCC-eEEeCCchHHHHHHHHh-----C-ceeec
Confidence 5699999999999999999889999999999999999999999984 996 77743332222222222 1 33444
Q ss_pred CCCCHH-hhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC----eeEEEeeecCCCC
Q 022377 93 DTLVPA-KFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI----NIRFIEFMPFDGN 167 (298)
Q Consensus 93 dg~~~~-~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~----~~~~~~~~p~~~~ 167 (298)
.+.... ..-+..++ +--.--+.+..|.+.+. .+++.- ..+.++++++-+..=|. ++. -+.+.
T Consensus 129 P~vsQtvilTR~sgr-t~vpe~e~l~~la~~~a-----Tm~I~L--~v~~I~~vv~~L~~g~y~~dtPVa-----VV~rA 195 (254)
T COG2875 129 PGVSQTVILTRPSGR-TPVPEKESLAALAKHGA-----TMVIFL--GVHAIDKVVEELLEGGYPPDTPVA-----VVYRA 195 (254)
T ss_pred CCcceeEEEEccccC-CCCCchhHHHHHHhcCc-----eeEeee--hhhHHHHHHHHHhcCCCCCCCCEE-----EEEec
Confidence 443211 00111121 11123455666666665 334442 35667777776554111 111 12345
Q ss_pred CCcccCC--CCHHHHHHHHHHh
Q 022377 168 VWNVKKL--VPYAEMLDTVVKK 187 (298)
Q Consensus 168 ~~~~~~~--~~~~e~~~~i~~~ 187 (298)
.|..+.. -+.+++.+++++.
T Consensus 196 sWpDe~ii~GTL~dIa~kv~~~ 217 (254)
T COG2875 196 SWPDEKIIRGTLEDIAEKVKEA 217 (254)
T ss_pred CCCcccEEEeeHHHHHHHHHhc
Confidence 6655443 3467777777654
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.31 E-value=6.3 Score=34.97 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccC--CCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~--~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..|.+.| || |+|..+ -.++++.+.+.- .+. +-.-+.+..+.+ ..+...+
T Consensus 19 dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvp-viaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 19 DGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVP-VIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCc-EEEecCCCcHHHHHHHHHHHHh
Confidence 3669999999999999999999999976 99 888765 445666555532 332 444455544543 4566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
.|.+.+.+.--.+. ..+.+-+.+-++.+.+. +. ++.+
T Consensus 98 ~Gad~il~v~PyY~---------k~~~~gl~~hf~~ia~a~~l-Pvil 135 (299)
T COG0329 98 LGADGILVVPPYYN---------KPSQEGLYAHFKAIAEAVDL-PVIL 135 (299)
T ss_pred cCCCEEEEeCCCCc---------CCChHHHHHHHHHHHHhcCC-CEEE
Confidence 89997777643321 12345566666666553 55 4443
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.23 E-value=16 Score=31.54 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CccCcccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhHH----HHHHcCCCeEEEec
Q 022377 20 ILRLAYLFVTSGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLP----KLKESGLTSVNISL 92 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~----~l~~~~~~~v~iSl 92 (298)
+...++.+++.|. .|.|+- -.+-..++ +.++++.+.+. |...+.+ .|.|...++.+. .+++ ... +.|++
T Consensus 112 ~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v~~lv~~l~~-~~~-~~l~~ 187 (259)
T cd07939 112 LRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEA-GADRLRFADTVGILDPFTTYELIRRLRA-ATD-LPLEF 187 (259)
T ss_pred HHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHC-CCCEEEeCCCCCCCCHHHHHHHHHHHHH-hcC-CeEEE
Confidence 4456666666774 455432 11122344 44777777663 5544443 478877765443 3333 233 55666
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-CC--CHhHHHHHHHHHhhC-CC
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-GF--NDDEICDFVELTRDR-PI 154 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~~--n~~~i~~i~~~~~~~-g~ 154 (298)
++.+ ++...+.|.-.+.++|+.. +.+++.- |. ---.+++++..+..+ |+
T Consensus 188 H~Hn-----------~~Gla~An~laAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~ 240 (259)
T cd07939 188 HAHN-----------DLGLATANTLAAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHLYGR 240 (259)
T ss_pred EecC-----------CCChHHHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHhcCC
Confidence 6532 1224445555555677732 3333331 11 012355566655554 55
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.7 Score=37.07 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=71.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+. +.++...
T Consensus 15 ~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~-vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 15 EDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVP-VIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCc-EEeecCCchHHHHHHHHHHHH
Confidence 45689999999999999999999999876 88 777665 33555544432 1343 44444443343 4567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.. + ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 94 ~~G~d~v~~~pP~~----~-----~~~~~~i~~~~~~ia~~~~~-pv~lY 133 (292)
T PRK03170 94 KAGADGALVVTPYY----N-----KPTQEGLYQHFKAIAEATDL-PIILY 133 (292)
T ss_pred HcCCCEEEECCCcC----C-----CCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 88999888864332 1 12346677777777664 56 66554
|
|
| >COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.92 E-value=19 Score=32.05 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-CC-CCEEEEcCCccCc-ccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHH
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVT-SG-VDKIRLTGGEPTV-RKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~-~~-~~~v~~tGGEPll-~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~ 82 (298)
+...++..++.+++..+++++.+ .. ...|.++|-=|=- .++ +.++++.+++. +.. +.+.|.|-.|. ...+
T Consensus 103 ein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~-g~~-vilD~Sg~~L~----~~L~ 176 (310)
T COG1105 103 EINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQ-GAK-VILDTSGEALL----AALE 176 (310)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhc-CCe-EEEECChHHHH----HHHc
Confidence 34556788999999999999988 43 3468888977544 445 55999999995 885 99999996654 3334
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPV 127 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v 127 (298)
++..-|--. .+|.. .+-+. .+.+.+++..+.+++.|+.+|
T Consensus 177 ~~P~lIKPN----~~EL~-~~~g~~~~~~~d~i~~a~~l~~~g~~~V 218 (310)
T COG1105 177 AKPWLIKPN----REELE-ALFGRELTTLEDVIKAARELLAEGIENV 218 (310)
T ss_pred cCCcEEecC----HHHHH-HHhCCCCCChHHHHHHHHHHHHCCCCEE
Confidence 443322211 23333 33332 236688888888999998433
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.62 E-value=18 Score=31.42 Aligned_cols=114 Identities=14% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCcc-cc-HHHHHHHHhccCCCCcEEE-EeCccchHhhH----HHHHHcCCCeEEEec
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTVR-KD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL----PKLKESGLTSVNISL 92 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll~-~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~----~~l~~~~~~~v~iSl 92 (298)
+.++++.+.+.| ..|.++.-.-+-. ++ +.++++.+.+. |...+.+ .|.|...++.+ ..+++ ..+ +.|++
T Consensus 114 ~~~~i~~a~~~G-~~v~~~~eda~r~~~~~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~v~~~~~~~~~-~~~-~~i~~ 189 (262)
T cd07948 114 AVEVIEFVKSKG-IEVRFSSEDSFRSDLVDLLRVYRAVDKL-GVNRVGIADTVGIATPRQVYELVRTLRG-VVS-CDIEF 189 (262)
T ss_pred HHHHHHHHHHCC-CeEEEEEEeeCCCCHHHHHHHHHHHHHc-CCCEEEECCcCCCCCHHHHHHHHHHHHH-hcC-CeEEE
Confidence 445556666666 3455543222211 33 45777777774 6544443 58888776543 34443 233 66666
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C--CCHhHHHHHHHHHh
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--FNDDEICDFVELTR 150 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~--~n~~~i~~i~~~~~ 150 (298)
+..+ ++.-.+.|.-.+.++|+.. +.+++.- | .-...++.++..+.
T Consensus 190 H~Hn-----------~~Gla~an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 190 HGHN-----------DTGCAIANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EECC-----------CCChHHHHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 6632 2234555666666778732 3443331 1 11124555655554
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=87.10 E-value=3.5 Score=36.21 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKL 80 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l 80 (298)
.++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+.+ ..+..
T Consensus 14 ~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~p-vi~gv~~~~t~~~i~~a~~a 92 (280)
T PLN02417 14 LPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIK-VIGNTGSNSTREAIHATEQG 92 (280)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCc-EEEECCCccHHHHHHHHHHH
Confidence 346789999999999999999999999987 99 777654 34555554432 2343 555555444443 45666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g 123 (298)
.+.|.+.+.+.- |. |. ..+-+.+++-++.+.+..
T Consensus 93 ~~~Gadav~~~~----P~-y~----~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 93 FAVGMHAALHIN----PY-YG----KTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHcCCCEEEEcC----Cc-cC----CCCHHHHHHHHHHHHhhC
Confidence 778999777753 22 21 124567777777777764
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.84 E-value=8.3 Score=35.40 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccc-h-HhhHHHHHHcCCCeEEE
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLT-L-ARKLPKLKESGLTSVNI 90 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~l-l-~~~~~~l~~~~~~~v~i 90 (298)
.=+.+.+.++.+++.++|+..|+|--=-=+|.|.-. ++|+.+++..++. +.+.|..+. + ....-+-.++|+|.|-.
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~p-v~lHtH~TsG~a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVP-VELHTHATSGMAEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCe-eEEecccccchHHHHHHHHHHhCcchhhh
Confidence 457889999999999999999999643337888754 9999999977885 888877653 2 33455667789887665
Q ss_pred ecCC
Q 022377 91 SLDT 94 (298)
Q Consensus 91 Sldg 94 (298)
.+-.
T Consensus 231 Aisp 234 (472)
T COG5016 231 AISP 234 (472)
T ss_pred hhcc
Confidence 5543
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=20 Score=31.00 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.++-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++...+ .+.+-+. .-.+.++.+.++|.+.|.|
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG-p~~i~~i~~~~p~-DvHLMV~--~P~~~i~~~~~aGad~It~ 104 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG-PWAVGQLPQTFIK-DVHLMVA--DQWTAAQACVKAGAHCITL 104 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC-HHHHHHhccCCCe-eEEeeeC--CHHHHHHHHHHhCCCEEEE
Confidence 344567788888888888877764 454 533221 1344444432223 2443322 1345789999999999998
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC-------EEEEEEEecCCCHhHHHHHHHH
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNP-------VKVNCVVMRGFNDDEICDFVEL 148 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~-------v~i~~vi~~~~n~~~i~~i~~~ 148 (298)
...+.. ...+.|+.+++.|. + +....++.|+...+.++.+++.
T Consensus 105 H~Ea~~--------------~~~~~l~~Ir~~G~-k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~ 154 (254)
T PRK14057 105 QAEGDI--------------HLHHTLSWLGQQTV-PVIGGEMPVIRGISLCPATPLDVIIPILSD 154 (254)
T ss_pred eecccc--------------CHHHHHHHHHHcCC-CcccccccceeEEEECCCCCHHHHHHHHHh
Confidence 887531 23456667777776 3 4567788886556666666653
|
|
| >PRK15447 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=86.50 E-value=16 Score=32.37 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCc-----cCccccHHHHHHHHhccCCCCcEEEEeCccch-Hh---hHHHHHHcCCC
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGE-----PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-AR---KLPKLKESGLT 86 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGE-----Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~---~~~~l~~~~~~ 86 (298)
+......+...+.+.|+..|.+.+.. ++...++.++++.+++. |.+ +.++||..+. ++ .+..+.+.+.+
T Consensus 13 p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~-gkk-vyva~p~i~~~~~e~~~l~~~l~~~~~ 90 (301)
T PRK15447 13 PKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAA-GKE-VVLSTLALVEAPSELKELRRLVENGEF 90 (301)
T ss_pred CCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHc-CCE-EEEEecccccCHHHHHHHHHHHhcCCC
Confidence 33445566666677787787776321 35556788999999984 885 9999999754 43 35556666656
Q ss_pred eEEEecCCCCHHhhhhhc--CCC---cHH---HHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 87 SVNISLDTLVPAKFEFLT--RRK---GHE---KVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir--~~~---~~~---~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
.|.++ +......++ +.. ++. ---.+++.+.+.|.. ++|+.+..|.+||.++.+..
T Consensus 91 ~v~v~----d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~----rv~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 91 LVEAN----DLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGAT----RWCMPVELSRDWLANLLAQC 153 (301)
T ss_pred EEEEe----CHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCc----EEEECCcCCHHHHHHHHHhc
Confidence 55543 232222222 110 111 112356666777762 45777777888888876654
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=86.20 E-value=5.1 Score=35.12 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchH---hhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLA---RKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~---~~~~~l~~~~~ 85 (298)
..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+..+ . +-..+.+..+. +..+...+.|.
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~-vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K-VIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C-EEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999987 99 888765 4466665554322 1 33333333343 35667777899
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 130 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 130 (298)
+.+.+---.+ +. ..+-+.+.+-.+.+.+ .+ ++.+.
T Consensus 93 d~v~v~~P~y----~~----~~~~~~i~~yf~~v~~-~l-pv~iY 127 (279)
T cd00953 93 YAIASLPPYY----FP----GIPEEWLIKYFTDISS-PY-PTFIY 127 (279)
T ss_pred CEEEEeCCcC----CC----CCCHHHHHHHHHHHHh-cC-CEEEE
Confidence 9777653321 11 1134566666677766 77 66553
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=85.89 E-value=7.7 Score=33.87 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=73.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+.+ ..+...
T Consensus 11 ~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~-vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 11 ADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVP-VIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCe-EEEecCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999877 99 666654 44666555442 1343 555555544543 456677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.. + . .+-+.+++-++.+.+. ++ ++.+.
T Consensus 90 ~~Gad~v~v~pP~y----~-~----~~~~~~~~~~~~ia~~~~~-pi~iY 129 (281)
T cd00408 90 EAGADGVLVVPPYY----N-K----PSQEGIVAHFKAVADASDL-PVILY 129 (281)
T ss_pred HcCCCEEEECCCcC----C-C----CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 78999888854321 1 1 3456777777777774 55 55543
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=85.72 E-value=12 Score=33.67 Aligned_cols=137 Identities=19% Similarity=0.166 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhCC--CCEEEEc--CCccCcccc-----HH-HHHHHHhcc-----------------CCCCcEEEE
Q 022377 15 LSLNEILRLAYLFVTSG--VDKIRLT--GGEPTVRKD-----IE-EACFHLSKL-----------------KGLKTLAMT 67 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~--~~~v~~t--GGEPll~~~-----~~-~ii~~~~~~-----------------~~~~~v~i~ 67 (298)
-+.++...-+++++++| +..|.|. ||.=+.-|. |+ .+-+.+.-+ +-+ -++|.
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCi-GiTIE 228 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCI-GITIE 228 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceee-eEEee
Confidence 45667777889999987 5566653 665443343 22 332222111 112 24566
Q ss_pred eCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC---HhHHH
Q 022377 68 TNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN---DDEIC 143 (298)
Q Consensus 68 TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n---~~~i~ 143 (298)
|-.-.. ...+..+...|...+.|.+.+.-++.-+.-.++.....+-+.+...+++|+ +|...++-.- .| ..+++
T Consensus 229 TRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~-KvV~HMMPdL-PNVg~eRDie 306 (554)
T KOG2535|consen 229 TRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGF-KVVAHMMPDL-PNVGMERDIE 306 (554)
T ss_pred cCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCc-eeehhhCCCC-CCCchhhhHH
Confidence 665444 678999999999999999999755554444455678899999999999999 6655443221 23 35688
Q ss_pred HHHHHHhhCCC
Q 022377 144 DFVELTRDRPI 154 (298)
Q Consensus 144 ~i~~~~~~~g~ 154 (298)
++.+++.+-.+
T Consensus 307 qF~E~FenP~F 317 (554)
T KOG2535|consen 307 QFKEYFENPAF 317 (554)
T ss_pred HHHHHhcCcCc
Confidence 89998877443
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.28 E-value=27 Score=32.21 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhccCCCCcEEE-----EeCccc------hHhh
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKLKGLKTLAM-----TTNGLT------LARK 76 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~~~~~~v~i-----~TNG~l------l~~~ 76 (298)
.|..++..-+++.+.+.|...+-+-||--| |+.|=++-++.+++.-+-..+.+ ++=|+. .+.+
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~F 103 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKF 103 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHH
Confidence 488899999999999999888888888753 44455555666655311111221 222332 2345
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCE--EEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v--~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+++..++|++.+.| +|+.+.- .....+++..++.|. ++ .+.++++|=++.+...++++-+.++|+
T Consensus 104 v~ka~~nGidvfRi-FDAlND~-----------RNl~~ai~a~kk~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~ 170 (472)
T COG5016 104 VEKAAENGIDVFRI-FDALNDV-----------RNLKTAIKAAKKHGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGV 170 (472)
T ss_pred HHHHHhcCCcEEEe-chhccch-----------hHHHHHHHHHHhcCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCC
Confidence 67777789997766 3654422 233445566666776 54 455566665556666666666666787
Q ss_pred eeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 155 NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+ .+.+-...+-- .+....|+...+++.++
T Consensus 171 D--SIciKDmaGll----tP~~ayelVk~iK~~~~ 199 (472)
T COG5016 171 D--SICIKDMAGLL----TPYEAYELVKAIKKELP 199 (472)
T ss_pred C--EEEeecccccC----ChHHHHHHHHHHHHhcC
Confidence 5 33333322210 11234677788888773
|
|
| >PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=85.26 E-value=6.1 Score=34.52 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEc-C--C----------ccCccccHHHHHHHHhccCCCCcEEEEeCc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLT-G--G----------EPTVRKDIEEACFHLSKLKGLKTLAMTTNG 70 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~t-G--G----------EPll~~~~~~ii~~~~~~~~~~~v~i~TNG 70 (298)
.-++.+..++.|+.+.++|...|.+- | | +|.-..++.++++|+++ +|+. +.|-.|-
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~-KgVg-i~lw~~~ 95 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE-KGVG-IWLWYHS 95 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH-TT-E-EEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH-cCCC-EEEEEeC
Confidence 35799999999999999999999884 3 1 23345668899999999 5985 7776665
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=84.90 E-value=28 Score=31.07 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CC---------ccCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHH
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GG---------EPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GG---------EPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~ 82 (298)
-+.+++.+.++++.+.|...|.+. |+ .+.+.++ +..+++.+++. ++. +.+..++. ..++...+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-g~~-v~~H~~~~---~~i~~~l~ 191 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-GLY-VAAHAYGA---EAIRRAIR 191 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-CCE-EEEEeCCH---HHHHHHHH
Confidence 358889999999888898877654 43 2355555 55889888885 885 87777763 23445556
Q ss_pred cCCCeE
Q 022377 83 SGLTSV 88 (298)
Q Consensus 83 ~~~~~v 88 (298)
.|.+.+
T Consensus 192 ~G~~~i 197 (342)
T cd01299 192 AGVDTI 197 (342)
T ss_pred cCCCEE
Confidence 666643
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.72 E-value=23 Score=29.92 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=85.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccchH----hhHHHH
Q 022377 8 LTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLTLA----RKLPKL 80 (298)
Q Consensus 8 ~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~ll~----~~~~~l 80 (298)
.+-=+...|.+++.++++++.++++..|++. |.+..+++...+..++. +..+.+ |.... ...+..
T Consensus 12 ~T~L~p~~t~~~i~~~~~~A~~~~~~avcv~-------p~~v~~a~~~l~~~~v~-v~tVigFP~G~~~~~~K~~e~~~A 83 (221)
T PRK00507 12 HTLLKPEATEEDIDKLCDEAKEYGFASVCVN-------PSYVKLAAELLKGSDVK-VCTVIGFPLGANTTAVKAFEAKDA 83 (221)
T ss_pred hccCCCCCCHHHHHHHHHHHHHhCCeEEEEC-------HHHHHHHHHHhCCCCCe-EEEEecccCCCChHHHHHHHHHHH
Confidence 3334568999999999999999999888874 66666655443323553 544432 22221 235566
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+.|.+.+-+-++-.... .+.|+.+.+-|+.+++. +. .+++-.-.. -.+.+++..+.+.+.+.|++
T Consensus 84 i~~GA~EiD~Vin~~~~~-------~g~~~~v~~ei~~v~~~~~~~-~lKvIlEt~-~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 84 IANGADEIDMVINIGALK-------SGDWDAVEADIRAVVEAAGGA-VLKVIIETC-LLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred HHcCCceEeeeccHHHhc-------CCCHHHHHHHHHHHHHhcCCc-eEEEEeecC-cCCHHHHHHHHHHHHHhCCC
Confidence 667888877776642111 24589999999998885 33 343322222 25678899999999998887
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=84.42 E-value=6.1 Score=29.82 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 5 GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 5 ~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
|++-..-+...+.+++.+.+ .+.+..-|.+++-.+...+.+.++++.+++. +...+.+.--|...++..+++.++|
T Consensus 27 G~~vi~lG~~vp~e~~~~~a---~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~-~~~~i~i~~GG~~~~~~~~~~~~~G 102 (122)
T cd02071 27 GFEVIYTGLRQTPEEIVEAA---IQEDVDVIGLSSLSGGHMTLFPEVIELLREL-GAGDILVVGGGIIPPEDYELLKEMG 102 (122)
T ss_pred CCEEEECCCCCCHHHHHHHH---HHcCCCEEEEcccchhhHHHHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHCC
Confidence 44444445567777765444 4556778888877666666777888888774 4423556666655566788888888
Q ss_pred CC
Q 022377 85 LT 86 (298)
Q Consensus 85 ~~ 86 (298)
++
T Consensus 103 ~d 104 (122)
T cd02071 103 VA 104 (122)
T ss_pred CC
Confidence 77
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=84.34 E-value=5.1 Score=35.18 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.+..+.+ ..+...
T Consensus 12 ~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~-vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 12 EDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVP-VIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999865 88 777655 33555544432 1343 545555544544 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--. .+ ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 91 ~~Gad~v~v~pP~----y~-----~~~~~~i~~~~~~i~~~~~~-pi~lY 130 (285)
T TIGR00674 91 DVGADGFLVVTPY----YN-----KPTQEGLYQHFKAIAEEVDL-PIILY 130 (285)
T ss_pred HcCCCEEEEcCCc----CC-----CCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 7899988886432 11 12346677777777664 55 55443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.14 E-value=24 Score=29.68 Aligned_cols=113 Identities=13% Similarity=0.203 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC--Cc--cCccccHHHHHHHHhccCCCC-cEEE-EeCccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTG--GE--PTVRKDIEEACFHLSKLKGLK-TLAM-TTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tG--GE--Pll~~~~~~ii~~~~~~~~~~-~v~i-~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
++..+.+-++++.+.|...+++-= |- |-+-.. ..+++.+++...+. .+.+ +.|. ++.++.+.++|.+.|+
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfG-p~~v~~l~~~t~~p~DvHLMV~~p---~~~i~~fa~agad~It 89 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHFVPNITFG-PPVVKALRKITDLPLDVHLMVENP---DRYIEAFAKAGADIIT 89 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccC-HHHHHHHhhcCCCceEEEEecCCH---HHHHHHHHHhCCCEEE
Confidence 344555667777778888888752 32 222211 25555555532221 2332 2332 5679999999999998
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
|.... .+ .+.+.|+.+++.|+ . ...++.|+...+.++.+++.+
T Consensus 90 ~H~E~-~~-------------~~~r~i~~Ik~~G~-k--aGv~lnP~Tp~~~i~~~l~~v 132 (220)
T COG0036 90 FHAEA-TE-------------HIHRTIQLIKELGV-K--AGLVLNPATPLEALEPVLDDV 132 (220)
T ss_pred EEecc-Cc-------------CHHHHHHHHHHcCC-e--EEEEECCCCCHHHHHHHHhhC
Confidence 88763 21 34566777778887 4 456777865566666666543
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=83.97 E-value=7.3 Score=32.39 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCC-cEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 18 NEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
-.+.+-++++.+.|+..+++= -|. |-+.. -.++++++++...+. .+.+-+. .-.+.++.+.++|.+.|.+.+
T Consensus 12 ~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~-g~~~i~~i~~~~~~~~DvHLMv~--~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF-GPDIIKAIRKITDLPLDVHLMVE--NPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B--HHHHHHHHTTSSSEEEEEEESS--SGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHHcCCCEEEEeecccccCCcccC-CHHHHHHHhhcCCCcEEEEeeec--cHHHHHHHHHhcCCCEEEEcc
Confidence 345666778888888877763 454 54432 235666666643322 2443222 124579999999999998888
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
++.. ...+.++.++++|+ +++ ..+.|+...+.++.++
T Consensus 89 E~~~--------------~~~~~i~~ik~~g~-k~G--ialnP~T~~~~~~~~l 125 (201)
T PF00834_consen 89 EATE--------------DPKETIKYIKEAGI-KAG--IALNPETPVEELEPYL 125 (201)
T ss_dssp GGTT--------------THHHHHHHHHHTTS-EEE--EEE-TTS-GGGGTTTG
T ss_pred cchh--------------CHHHHHHHHHHhCC-CEE--EEEECCCCchHHHHHh
Confidence 7531 23456777788888 554 4566754455554443
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=83.96 E-value=10 Score=33.24 Aligned_cols=108 Identities=13% Similarity=0.226 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..+.+.| || +.|..+ -.++++.+.+. .++. +-+.+.+..+. +.++...
T Consensus 15 ~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~-vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 15 ADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVP-VIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp TTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSE-EEEEEESSSHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceE-EEecCcchhHHHHHHHHHHHh
Confidence 46789999999999999999999999976 89 555443 34555544331 2443 55556655554 4567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+..-.+. ..+-+.+++-++.+.+. ++ ++.+
T Consensus 94 ~~Gad~v~v~~P~~~---------~~s~~~l~~y~~~ia~~~~~-pi~i 132 (289)
T PF00701_consen 94 DAGADAVLVIPPYYF---------KPSQEELIDYFRAIADATDL-PIII 132 (289)
T ss_dssp HTT-SEEEEEESTSS---------SCCHHHHHHHHHHHHHHSSS-EEEE
T ss_pred hcCceEEEEeccccc---------cchhhHHHHHHHHHHhhcCC-CEEE
Confidence 889998888753221 23466777777777765 45 5544
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.90 E-value=35 Score=31.36 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=11.8
Q ss_pred HHHHHHhccCCCCcEE-EEeCccchHh
Q 022377 50 EACFHLSKLKGLKTLA-MTTNGLTLAR 75 (298)
Q Consensus 50 ~ii~~~~~~~~~~~v~-i~TNG~ll~~ 75 (298)
++++.+.+. |...+. ..|+|...++
T Consensus 149 ~~~~~~~~~-Ga~~I~l~DT~G~~~P~ 174 (378)
T PRK11858 149 EFAKAAEEA-GADRVRFCDTVGILDPF 174 (378)
T ss_pred HHHHHHHhC-CCCEEEEeccCCCCCHH
Confidence 555555552 433222 2466655543
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=83.86 E-value=32 Score=30.86 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. ...++.++..+++..+.+.|+..+.+.. |-..++..+..+.+... +.. -.+..-+....+.++...
T Consensus 6 lRDG~q~~--~~~~~~~~ki~i~~~l~~~Gv~~iE~g~--p~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~a~ 79 (344)
T TIGR02146 6 LREGEQFP--GANFSTEQKIEIAKALDEFGIDYIEVTH--PAASKQSRIDIEIIASL-GLK-ANIVTHIRCRLDDAKVAV 79 (344)
T ss_pred CCccCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHHHHHhc-CCC-cEEEEECCCCHHHHHHHH
Confidence 56666644 4568999999999999999998888765 55555544444444432 221 122222222234566677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCC----cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRK----GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~----~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
+.+++.+.+..-. + +.+....-.. ..+.+...++.+.+.|. .+.+...-.-....+.+.++++.+...|.+
T Consensus 80 ~~~~~~~~~~~~~-s-~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~-~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 154 (344)
T TIGR02146 80 ELGVDGIDIFFGT-S-KLLRIAEHRSDAKSILESARETIEYAKSAGL-EVRFSAEDTFRSELADLLSIYETVGVFGVD 154 (344)
T ss_pred HCCcCEEEEEEec-C-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCHHHHHHHHHHHHHCCCC
Confidence 7788877766533 2 3222221111 25678888888888888 666655333223456677777777776663
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.83 E-value=17 Score=31.67 Aligned_cols=103 Identities=11% Similarity=0.159 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccC-cccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhHHHHHHc---CCCe-E
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPT-VRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKES---GLTS-V 88 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPl-l~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~~l~~~---~~~~-v 88 (298)
..+++...++.+++.|. .|.++.=.-+ ..++ +.++++.+.+. |...+.+ .|.|.+.++.+..+... .++. +
T Consensus 107 ~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~-g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 184 (266)
T cd07944 107 EFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEI-KPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDI 184 (266)
T ss_pred cHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 56777777887777774 3333211111 2233 44777777764 5544443 48887776544333221 2322 5
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 131 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 131 (298)
.|++++.+ ++.-.+.|.....++|...+...+
T Consensus 185 ~i~~H~Hn-----------~~Gla~AN~laA~~aGa~~vd~s~ 216 (266)
T cd07944 185 KLGFHAHN-----------NLQLALANTLEAIELGVEIIDATV 216 (266)
T ss_pred eEEEEeCC-----------CccHHHHHHHHHHHcCCCEEEEec
Confidence 66666632 234555555556667774444444
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=11 Score=34.17 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCC---------ccCcc-------------ccHH-HHHHHHhccCCC
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGG---------EPTVR-------------KDIE-EACFHLSKLKGL 61 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGG---------EPll~-------------~~~~-~ii~~~~~~~~~ 61 (298)
..+||.|||..+++.+.+ .|...|.+.+| -|..+ ..|. ++++.+++.-++
T Consensus 129 p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~ 208 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDG 208 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 367999999999875544 68889999887 47652 2244 888888874344
Q ss_pred CcEEEEeC-------ccchHh---hHHHHHHcCCCeEEEecCC
Q 022377 62 KTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 62 ~~v~i~TN-------G~ll~~---~~~~l~~~~~~~v~iSldg 94 (298)
. +.+-.| |.-.++ .+..|.+.|+|.|.||.-+
T Consensus 209 ~-v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 209 P-LFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred C-eEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3 555444 333332 3577777899999999654
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=6.5 Score=34.71 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHHHHHh-CCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVT-SGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPK 79 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~ 79 (298)
.++..++.+.+.+.++.+.+ .|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+....+++ ..+.
T Consensus 16 ~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~-viagvg~~~t~~ai~~a~~ 94 (293)
T PRK04147 16 DEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVK-LIAQVGSVNTAEAQELAKY 94 (293)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCC-EEecCCCCCHHHHHHHHHH
Confidence 35678999999999999999 9999999987 99 777765 33555544432 2343 545454444443 4566
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
..+.|.+.+.+.--.. + ..+-+.+++-++.+.++ +. ++.+.
T Consensus 95 a~~~Gad~v~v~~P~y----~-----~~~~~~l~~~f~~va~a~~l-Pv~iY 136 (293)
T PRK04147 95 ATELGYDAISAVTPFY----Y-----PFSFEEICDYYREIIDSADN-PMIVY 136 (293)
T ss_pred HHHcCCCEEEEeCCcC----C-----CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 7788999888774321 1 12345666666666654 56 55543
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=83.14 E-value=6.5 Score=34.77 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +..-+.+..+.+ ..+...
T Consensus 14 ~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~p-vi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 14 RNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIP-FAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCc-EEEECCcchHHHHHHHHHHHH
Confidence 45679999999999999999999999987 89 666544 33555543331 2343 444444434433 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 130 (298)
+.|.+.+.+.--. .+ ..+-+.+++-.+.+.++ ++ ++.+.
T Consensus 93 ~~Gad~v~v~pP~----y~-----~~~~~~l~~~f~~ia~a~~~l-pv~iY 133 (294)
T TIGR02313 93 EAGADAAMVIVPY----YN-----KPNQEALYDHFAEVADAVPDF-PIIIY 133 (294)
T ss_pred HcCCCEEEEcCcc----CC-----CCCHHHHHHHHHHHHHhccCC-CEEEE
Confidence 7799987776432 11 12356777777777664 46 65543
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=83.06 E-value=25 Score=29.09 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccc-hH---hhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLT-LA---RKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~l-l~---~~~~~l~~~~~ 85 (298)
...+.+++.++++++.+.++..|+++ |.+.+.+....+..++. +..+.+ |.. .+ ..++...+.|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~-------p~~v~~~~~~l~~~~~~-v~~~~~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN-------PCFVPLAREALKGSGVK-VCTVIGFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc-------HHHHHHHHHHcCCCCcE-EEEEEecCCCCCcHHHHHHHHHHHHHcCC
Confidence 56799999999999999888888866 66655443332213442 443332 111 11 23677777899
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
+.|.+.++-. . + ..+.++.+++.|..+.+. |. ++.+.+-... .+.+++....+.+.+.|.++-
T Consensus 84 devdvv~~~g-~-----~-~~~~~~~~~~ei~~v~~~~~g~-~lkvI~e~~~-l~~~~i~~a~ria~e~GaD~I 148 (203)
T cd00959 84 DEIDMVINIG-A-----L-KSGDYEAVYEEIAAVVEACGGA-PLKVILETGL-LTDEEIIKACEIAIEAGADFI 148 (203)
T ss_pred CEEEEeecHH-H-----H-hCCCHHHHHHHHHHHHHhcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEE
Confidence 9999988752 1 1 124577888888888875 55 6665322222 456789999999999999753
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=30 Score=29.83 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCcc
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL 71 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ 71 (298)
..+.+++...+.+..+.|-..+.++.|+|+++.-...+++.+.+. ++. +.+.-.-+
T Consensus 63 ~~~~~~i~~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l~~~-~i~-veiiPGIS 118 (257)
T PRK15473 63 ELHLEQIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEELTKR-GID-FQVVPGVS 118 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHHHHC-CCC-EEEeCChh
Confidence 356777777777666666567778899999998888999988874 775 77754433
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=82.71 E-value=13 Score=32.57 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=71.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
.+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+. +.++...
T Consensus 14 ~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~-vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 14 DDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVP-VIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCc-EEeccCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999876 88 666554 44666655442 1342 44444444443 3567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.|.+.--.. + ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 93 ~~G~d~v~~~~P~~----~-----~~~~~~l~~~~~~ia~~~~~-pi~lY 132 (284)
T cd00950 93 KAGADAALVVTPYY----N-----KPSQEGLYAHFKAIAEATDL-PVILY 132 (284)
T ss_pred HcCCCEEEEccccc----C-----CCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 88999888874321 1 12346677777777764 56 66544
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR00620 sporelyase spore photoproduct lyase | Back alignment and domain information |
|---|
Probab=82.63 E-value=17 Score=30.09 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=55.7
Q ss_pred HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhh-cCCCcHHHHHHHHHHHHHcCCCC
Q 022377 48 IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFL-TRRKGHEKVMESINAAIEVGYNP 126 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~i-r~~~~~~~v~~~i~~l~~~g~~~ 126 (298)
+.+.++...+..+. .+.+.|--..++ .+..+...+-..+..||.. ++.-+.. .+..+++.-+++++.+.++|. +
T Consensus 12 l~~~I~ff~~~~~~-~lef~TK~~nv~-~Ll~l~~~~~t~~rfSlnp--~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy-~ 86 (199)
T TIGR00620 12 LKRAIEHFGQSDFG-KLRFVTKFHHVD-HLLDAKHNGKTRFRFSINA--DYVIKNFEPGTSPLDKRIEAAVKVAKAGY-P 86 (199)
T ss_pred HHHHHHHHccCCCc-EEEEEEcccchh-hHhcCCCCCCEEEEEEeCH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCC-e
Confidence 45777777776566 488888765442 2444445566679999987 3333333 355679999999999999999 8
Q ss_pred EEEEE
Q 022377 127 VKVNC 131 (298)
Q Consensus 127 v~i~~ 131 (298)
|++.+
T Consensus 87 Vg~~~ 91 (199)
T TIGR00620 87 LGFII 91 (199)
T ss_pred EEEEe
Confidence 88776
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=82.62 E-value=17 Score=32.84 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc---------cCcc-------------ccHH-HHHHHHhccC--
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGGE---------PTVR-------------KDIE-EACFHLSKLK-- 59 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE---------Pll~-------------~~~~-~ii~~~~~~~-- 59 (298)
..+||.++|..+++++.+ .|...|.|.+|- |..+ ..|. ++++.+++..
T Consensus 136 p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~ 215 (338)
T cd04733 136 PRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP 215 (338)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 468999999988875544 688899998875 7754 2344 8888888743
Q ss_pred CCCcEEEEeC-------ccchH---hhHHHHHHcCCCeEEEecC
Q 022377 60 GLKTLAMTTN-------GLTLA---RKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 60 ~~~~v~i~TN-------G~ll~---~~~~~l~~~~~~~v~iSld 93 (298)
++. +.+--| |.-.+ +.++.|.+.|++.|.||--
T Consensus 216 d~~-v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 216 GFP-VGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred CCe-EEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 343 666554 33333 3457777788999988853
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02645 phosphoglycolate phosphatase | Back alignment and domain information |
|---|
Probab=82.51 E-value=3.6 Score=36.63 Aligned_cols=73 Identities=27% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh--CCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCC
Q 022377 10 PKPQLLSLNEILRLAYLFVT--SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGL 85 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~--~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~ 85 (298)
.....|+.+++.++++.++- +.+..+.+.|++|+ +...+.++.+++. |+. +.+.||.... .+.+++|...|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~--~ga~e~l~~lr~~-g~~-~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 11 AAAQLLTLENADELIDSVETFIFDCDGVIWKGDKLI--EGVPETLDMLRSM-GKK-LVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred cccccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccC--cCHHHHHHHHHHC-CCE-EEEEeCCCCCCHHHHHHHHHHCCC
Confidence 34567889999998886543 34556777888876 7789999999984 985 9999986644 346788877775
Q ss_pred C
Q 022377 86 T 86 (298)
Q Consensus 86 ~ 86 (298)
.
T Consensus 87 ~ 87 (311)
T PLN02645 87 N 87 (311)
T ss_pred C
Confidence 3
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=82.22 E-value=16 Score=32.24 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.. .+.+ ..+...
T Consensus 19 ~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~p-vi~gv~~-~t~~ai~~a~~a~ 96 (296)
T TIGR03249 19 ADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVP-VYTGVGG-NTSDAIEIARLAE 96 (296)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCc-EEEecCc-cHHHHHHHHHHHH
Confidence 45789999999999999999999999876 99 777654 33555544331 2343 4444443 3543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.- |- |. ..+-+.+++-.+.+.++ ++ ++.+
T Consensus 97 ~~Gadav~~~p----P~-y~----~~s~~~i~~~f~~v~~a~~~-pvil 135 (296)
T TIGR03249 97 KAGADGYLLLP----PY-LI----NGEQEGLYAHVEAVCESTDL-GVIV 135 (296)
T ss_pred HhCCCEEEECC----CC-CC----CCCHHHHHHHHHHHHhccCC-CEEE
Confidence 78999776643 22 21 12346777777777664 45 5544
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=82.10 E-value=30 Score=29.27 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhcc-CCCC-cEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKL-KGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~-~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+.-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++. ..+. .+.+-++ ...+.++.+.++|.+.|.
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg-~~~i~~lr~~~~~~~~dvHLMv~--~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIG-PMVCQALRKHGITAPIDVHLMVE--PVDRIVPDFADAGATTIS 90 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccC-HHHHHHHHhhCCCCCEEEEeccC--CHHHHHHHHHHhCCCEEE
Confidence 34466777888888888777664 354 433221 2455555442 1221 2443322 134578999999999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~ 148 (298)
|...+. ....+.++.++++|+ +. ..++.|+...+.++.+++.
T Consensus 91 ~H~Ea~--------------~~~~~~l~~Ir~~g~-k~--GlalnP~T~~~~i~~~l~~ 132 (223)
T PRK08745 91 FHPEAS--------------RHVHRTIQLIKSHGC-QA--GLVLNPATPVDILDWVLPE 132 (223)
T ss_pred EcccCc--------------ccHHHHHHHHHHCCC-ce--eEEeCCCCCHHHHHHHHhh
Confidence 887652 124567788888888 55 4466675555666666553
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=81.97 E-value=33 Score=29.66 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCC-EEEEcCCccCcccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhHH----HHHHcCCCeEEE
Q 022377 18 NEILRLAYLFVTSGVD-KIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLP----KLKESGLTSVNI 90 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~-~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~----~l~~~~~~~v~i 90 (298)
+.+.+.++.+++.|.. .+.+...- ...++ +.++++.+.+. |...+.+ .|.|.+.++.+. .+++ .+..+.|
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~-G~d~i~l~DT~G~~~P~~v~~lv~~l~~-~~~~~~l 188 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSH-MASPEELAEQAKLMESY-GADCVYVTDSAGAMLPDDVRERVRALRE-ALDPTPV 188 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecc-CCCHHHHHHHHHHHHHc-CCCEEEEcCCCCCcCHHHHHHHHHHHHH-hCCCceE
Confidence 4566667777777632 22232111 12333 44777777663 5543443 477777655433 3333 2332455
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-CC--CHhHHHHHHHHHhhCCC
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-GF--NDDEICDFVELTRDRPI 154 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~~--n~~~i~~i~~~~~~~g~ 154 (298)
++++.+ ++...+.|.-.+.++|... +.+++.. |. ---.+++++.++...|+
T Consensus 189 ~~H~Hn-----------~~GlA~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g~ 242 (263)
T cd07943 189 GFHGHN-----------NLGLAVANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMGI 242 (263)
T ss_pred EEEecC-----------CcchHHHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcCC
Confidence 655532 1223444444444567622 3333331 11 11235556665555554
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=81.69 E-value=18 Score=32.15 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKL 80 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l 80 (298)
..+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.+ .+.+ ..+..
T Consensus 20 ~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~p-vi~gv~~-~t~~~i~~~~~a 97 (303)
T PRK03620 20 DADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVP-VIAGAGG-GTAQAIEYAQAA 97 (303)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCc-EEEecCC-CHHHHHHHHHHH
Confidence 356789999999999999999999999876 99 777665 33555544331 2343 4444433 4443 45666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
.+.|.+.+.+.- |- |. ..+-+.+.+-.+.+.+. ++ ++.+
T Consensus 98 ~~~Gadav~~~p----P~-y~----~~~~~~i~~~f~~va~~~~l-pi~l 137 (303)
T PRK03620 98 ERAGADGILLLP----PY-LT----EAPQEGLAAHVEAVCKSTDL-GVIV 137 (303)
T ss_pred HHhCCCEEEECC----CC-CC----CCCHHHHHHHHHHHHHhCCC-CEEE
Confidence 778999887742 22 21 12346677777777664 56 6554
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=81.39 E-value=9.1 Score=33.75 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-CCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSG-VDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~-~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l 80 (298)
.+..++.+.+.+.++.+.+.| +..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+. +..+..
T Consensus 14 ~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~p-vi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 14 EDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIA-LIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHH
Confidence 445899999999999999999 99999877 99 888765 33555544432 1342 44443333343 345666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKV 129 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i 129 (298)
.+.|.+.|.+.--. .+ ..+-+.+++-.+.+.+. +. ++.+
T Consensus 93 ~~~Gad~v~v~~P~----y~-----~~~~~~i~~yf~~v~~~~~~l-pv~l 133 (290)
T TIGR00683 93 TELGYDCLSAVTPF----YY-----KFSFPEIKHYYDTIIAETGGL-NMIV 133 (290)
T ss_pred HHhCCCEEEEeCCc----CC-----CCCHHHHHHHHHHHHhhCCCC-CEEE
Confidence 77899988775322 11 12346777777777653 46 5544
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >TIGR00646 MG010 DNA primase-related protein | Back alignment and domain information |
|---|
Probab=80.50 E-value=23 Score=29.76 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=53.3
Q ss_pred CccccHHHHHHHHhccCCCCcEEEEeCccchH-hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH
Q 022377 43 TVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE 121 (298)
Q Consensus 43 ll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~ 121 (298)
.+-....+++.... .|+. -.+.|.|+.++ +.+..|.....+.|.+.+|+. +. +-..+.+.++.+.+
T Consensus 114 ilvEGymDVIsl~q--aGi~-naVAslGTALT~~q~~lLkr~~~~~Iil~~D~D-~A---------G~~Aa~r~~~~L~~ 180 (218)
T TIGR00646 114 YLVEGDFDWLAFRK--AGIL-NCLPLCGLTISDKQMKFFKQKKIEKIFICFDND-FA---------GKNAAANLEEILKK 180 (218)
T ss_pred EEEecHHHHHHHHH--CCCC-eEEEcCchHhHHHHHHHHhccCCCEEEEEeCCC-HH---------HHHHHHHHHHHHHH
Confidence 34444667775543 3785 77889999885 467777664578899999994 33 34677888888988
Q ss_pred cCCCCEEEEEEEec
Q 022377 122 VGYNPVKVNCVVMR 135 (298)
Q Consensus 122 ~g~~~v~i~~vi~~ 135 (298)
.|+ .+. ++..|
T Consensus 181 ~G~-~v~--vv~lP 191 (218)
T TIGR00646 181 AGF-ITK--VIEIK 191 (218)
T ss_pred CCC-eEE--EEeCC
Confidence 888 554 34444
|
The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 298 | ||||
| 1tv7_A | 340 | Structure Of The S-adenosylmethionine Dependent Enz | 6e-43 | ||
| 2fb2_A | 340 | Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT | 3e-41 |
| >pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme Moaa Length = 340 | Back alignment and structure |
|
| >pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT Length = 340 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Length = 340 | Back alignment and structure |
|---|
Score = 420 bits (1083), Expect = e-149
Identities = 103/310 (33%), Positives = 166/310 (53%), Gaps = 13/310 (4%)
Query: 1 MPPE----GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLS 56
MP E PK +LL+ +E+ R+A ++ GV KIR+TGGEP +R+D++ L+
Sbjct: 32 MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLN 91
Query: 57 KLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGH-EKVMES 115
++ G++ + +TTNGL L + KL ++GL +N+SLD + F+ + R ++E
Sbjct: 92 QIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQ 151
Query: 116 INAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD-GNVWNVKKL 174
I+ A +G VKVN V+ +G NDD+I +E +D+ I IRFIEFM N W+ K+
Sbjct: 152 IDYATSIGL-NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKV 210
Query: 175 VPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLL 234
V EML + + F + E AK ++ + ITS+++ FC+ C R RL
Sbjct: 211 VTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLS 270
Query: 235 ADGNFKVCLFGPSE-VSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRP- 292
+DG F CLF + +++ +R +D+EL+E A + + ++ ANR
Sbjct: 271 SDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQR 330
Query: 293 ----MIHIGG 298
M +IGG
Sbjct: 331 KKINMNYIGG 340
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Length = 311 | Back alignment and structure |
|---|
Score = 76.5 bits (187), Expect = 3e-16
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 25/186 (13%)
Query: 38 TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVP 97
GEPT+ ++E K T + +NG L + K++ T + ISLD
Sbjct: 135 LSGEPTLYPYLDELIKIFHKNG--FTTFVVSNG-ILTDVIEKIE---PTQLYISLDAYDL 188
Query: 98 AKFEFLTRRKGH--EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155
+ + K E ++ +++ E + ++RG+NDD I FVEL +
Sbjct: 189 DSYRRICGGKKEYWESILNTLDILKE--KKRTCIRTTLIRGYNDD-ILKFVELYER--AD 243
Query: 156 IRFIEFMPFDGNVWNVKKL-----VPYAEMLDTV--VKKFPGLRRMQDHPTE-----TAK 203
+ FIE + ++ K+L + + E+L + + + + D +
Sbjct: 244 VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLIDDSEDSRVALLQNE 303
Query: 204 NFKIDG 209
N KI+
Sbjct: 304 NRKINP 309
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-14
Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 18/201 (8%)
Query: 32 VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL-TSVNI 90
GEP + + + K T + TNG R +KE L T + +
Sbjct: 143 THAAISLSGEPMLYPYMGDLVEEFHKRG--FTTFIVTNGTIPERLEEMIKEDKLPTQLYV 200
Query: 91 SLDTLVPAKFEFLTRRKGH---EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 147
S+ + + E+++ + ++ V +++G N + +
Sbjct: 201 SITAPDIETYNSVNIPMIPDGWERILRFLELMRDLP-TRTVVRLTLVKGENMHSPEKYAK 259
Query: 148 LTRDRP---INIRFIEFMPFDGNVWNVKKLVPYAEMLD---TVVKKFPGLRRMQDHPTE- 200
L + + F+ + N + + + ++ + +VK PG ++
Sbjct: 260 LILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGYHIEDEYEPSR 319
Query: 201 ----TAKNFKIDGHHGNVSFI 217
+ G FI
Sbjct: 320 VVLIMRDDVDPQGTGVEGRFI 340
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Length = 182 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 6/130 (4%)
Query: 37 LTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLV 96
GGEP + + +G+ A+ T L + ++ + + I L ++
Sbjct: 9 FCGGEPLLHPEFLIDILKRCGQQGIHR-AVDTTLLARKETVDEVMRN-CELLLIDLKSMD 66
Query: 97 PAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE--ICDFVELTRDRPI 154
+ +E ++++I E + P + ++ G N DE I E P
Sbjct: 67 STVHQTFCDV-PNELILKNIRRVAEADF-PYYIRIPLIEGVNADEKNIKLSAEFLASLPR 124
Query: 155 NIRFIEFMPF 164
+ I +P+
Sbjct: 125 HPEIINLLPY 134
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Length = 245 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 17 LNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76
+ E++ + SG + +GGE ++ + F K +G+ T + TNG
Sbjct: 56 MKEVVTYRHFMNASG-GGVTASGGEAILQAEFVRDWFRACKKEGIHT-CLDTNGFVRRYD 113
Query: 77 LPKLKESGLT-SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR 135
+ +T V + L + + L + + +E V + VV+
Sbjct: 114 PVIDELLEVTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKN-VKVWIRYVVVP 171
Query: 136 GFNDDE--ICDFVELTRDRPINIRFIEFMPF 164
G++DD+ E TRD N+ IE +P+
Sbjct: 172 GWSDDDDSAHRLGEFTRDMG-NVEKIELLPY 201
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 40/273 (14%), Positives = 93/273 (34%), Gaps = 70/273 (25%)
Query: 46 KDIEEACFHLSKLKGLKTLAMTTNGLTLARKL-PKLKESGLTSVNISLDTLVPAKFEFLT 104
KD+++ + + + + M+ + ++ +L L V ++ ++ ++FL
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 105 RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI-NIR------ 157
E+ S+ + + R +ND+++ ++R +P +R
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQ--------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 158 ------FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHH 211
I+ + G W + ++ + + +FKI
Sbjct: 148 RPAKNVLIDGVLGSGKTW----VA--LDVC-------------LSYKVQCKMDFKI---F 185
Query: 212 ----GNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREI 267
N + ++ E +L D N+ S+ S LR ++ ELR +
Sbjct: 186 WLNLKNCNSPETVLEML----QKLLYQIDPNWTS----RSDHSSNIKLRIHSIQAELRRL 237
Query: 268 IGAA-----------VKRKKAAHAGMFDI-AKT 288
+ + V+ KA +A F++ K
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNA--FNLSCKI 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 100.0 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 99.89 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.84 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.82 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.81 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.79 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.75 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 99.74 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 99.64 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 99.63 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.42 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.33 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.36 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 98.31 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 97.47 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 97.43 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 97.41 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 97.33 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 97.25 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.04 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 96.91 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 96.71 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 96.37 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 95.86 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 95.81 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 95.58 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 95.38 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 95.27 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 95.1 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 95.03 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 94.95 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 94.52 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 94.41 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 94.18 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 93.84 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 93.05 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 90.79 | |
| 2d73_A | 738 | Alpha-glucosidase SUSB; glycoside hydrolase family | 90.0 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 89.15 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 88.85 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 88.39 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 88.32 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 88.06 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 87.46 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 86.99 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 86.97 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 86.73 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 86.68 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 86.65 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 85.96 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 85.83 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 85.81 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 85.71 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 85.61 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 85.56 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 85.45 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 85.32 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 85.22 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 85.17 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 85.07 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 84.93 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 84.79 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 84.74 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 84.73 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 84.45 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 84.34 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 84.28 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 84.15 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 84.01 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 83.85 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 83.79 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 83.33 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 82.85 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 82.83 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 82.63 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 82.45 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 81.63 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 81.29 |
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=336.80 Aligned_cols=292 Identities=33% Similarity=0.583 Sum_probs=245.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 5 GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 5 ~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
+.++.++...|+.|++.++++.+.+.|+..|.|+|||||+++++.++++++++..++..+.++|||+++++.++.|+++|
T Consensus 40 ~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g 119 (340)
T 1tv8_A 40 DFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAG 119 (340)
T ss_dssp TCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHT
T ss_pred CcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccchhhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCC
Confidence 34455667789999999999999999999999999999999999999999998634435999999999988999999999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeec
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
++.|+|||||.+++.|+.+++.+ +|++++++|+.++++|+ ++.+++|++++.|.+++.++++++.++|++++++.++|
T Consensus 120 ~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~-~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~~~~i~~~p 198 (340)
T 1tv8_A 120 LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMD 198 (340)
T ss_dssp CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-EEEEEEEECTTTTGGGHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC-CEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeeE
Confidence 99999999999999999999988 89999999999999999 99999999998899999999999999999999999999
Q ss_pred CCCC-CCcccCCCCHHHHHHHHHHhCCCceec-CCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceee
Q 022377 164 FDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRM-QDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKV 241 (298)
Q Consensus 164 ~~~~-~~~~~~~~~~~e~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~p 241 (298)
.+.. .|.....++.+++++.+.+.+. +... ......+..+|.+++..+.++++.+....+|++|++++|+|||+|+|
T Consensus 199 ~~~~~~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~dG~v~p 277 (340)
T 1tv8_A 199 VGNDNGWDFSKVVTKDEMLTMIEQHFE-IDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYG 277 (340)
T ss_dssp BCSSSSBCCSSCCCHHHHHHHHHHHSC-EEEECCSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEES
T ss_pred cCCCccchhhcCCCHHHHHHHHHhhCC-ccccccCCCCCCCeEEEECCCCeEEEEECCCCCccccCCCcEEECCCccEEe
Confidence 8764 4665667889999999998884 3322 22233456778888777789999998889998899999999999999
Q ss_pred cCCCC-CCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccc-----cccccccccccC
Q 022377 242 CLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIA-----KTANRPMIHIGG 298 (298)
Q Consensus 242 C~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 298 (298)
|.+.. .+++|++++++|.+++.+.++|++++++||+.|++.-... ....|.|+.|||
T Consensus 278 C~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~m~~igg 340 (340)
T 1tv8_A 278 CLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG 340 (340)
T ss_dssp SSCCSSCCCCHHHHHHTCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTC-----------
T ss_pred CCCCCCCCcchHHHHhCCCCHHHHHHHHHHHHHhCchhcCcccccccccccCCCccccccCCC
Confidence 99998 8999999999999999999999999999999998532100 123689999998
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=162.43 Aligned_cols=132 Identities=14% Similarity=0.229 Sum_probs=113.5
Q ss_pred CEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHH
Q 022377 33 DKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEK 111 (298)
Q Consensus 33 ~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~ 111 (298)
..|.|+|||||+++++. ++++++++. ++. +.++|||++.++.++.+.+. ++.|.||+|+++++.|+++|+. ++++
T Consensus 5 ~~v~~tGGEPll~~~~~~~l~~~~~~~-g~~-~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g~-~~~~ 80 (182)
T 3can_A 5 GGVTFCGGEPLLHPEFLIDILKRCGQQ-GIH-RAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCDV-PNEL 80 (182)
T ss_dssp CCEEECSSTGGGSHHHHHHHHHHHHHT-TCC-EEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHSS-CSHH
T ss_pred CEEEEEcccccCCHHHHHHHHHHHHHC-CCc-EEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhCC-CHHH
Confidence 57999999999999985 999999984 895 99999999767788899886 8999999999999999999985 4799
Q ss_pred HHHHHHHHHHcCCCCEEEEEEEecCC--CHhHHHHHHHHHhhC-CC--eeEEEeeecCCCCCC
Q 022377 112 VMESINAAIEVGYNPVKVNCVVMRGF--NDDEICDFVELTRDR-PI--NIRFIEFMPFDGNVW 169 (298)
Q Consensus 112 v~~~i~~l~~~g~~~v~i~~vi~~~~--n~~~i~~i~~~~~~~-g~--~~~~~~~~p~~~~~~ 169 (298)
++++|+.+.+.|+ ++.++++++++. |.+++.++++++.++ |+ .+.+..+.|.+...|
T Consensus 81 i~~~i~~l~~~g~-~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~ 142 (182)
T 3can_A 81 ILKNIRRVAEADF-PYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKH 142 (182)
T ss_dssp HHHHHHHHHHTTC-CEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------
T ss_pred HHHHHHHHHhCCC-eEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHH
Confidence 9999999999999 999999999875 468999999999998 85 678888899886655
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-20 Score=157.35 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=126.6
Q ss_pred CCCCCCHHHHHHHHHHHHhC---CCCEEEEcCCccCccccH-HHHHHHHhccCCCCcEEEEeCccc--hHhhHHHHHHcC
Q 022377 11 KPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLT--LARKLPKLKESG 84 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~---~~~~v~~tGGEPll~~~~-~~ii~~~~~~~~~~~v~i~TNG~l--l~~~~~~l~~~~ 84 (298)
....++.+++.+.++++... ++..|.|+||||++++++ .++++++++. ++. +.++|||++ ..+.++.+.+.
T Consensus 46 ~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~~~l~~l~~~~~~~-~~~-i~i~Tng~~~~~~~~~~~l~~~- 122 (245)
T 3c8f_A 46 GGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKE-GIH-TCLDTNGFVRRYDPVIDELLEV- 122 (245)
T ss_dssp CSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHHHHHHHHHHHHTT-TCC-EEEEECCCCCCCCHHHHHHHHT-
T ss_pred cCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCHHHHHHHHHHHHHc-CCc-EEEEeCCCcCcCHHHHHHHHHh-
Confidence 35578999999888876653 468999999999999995 6999999985 885 999999988 66788888886
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCCC--eeEEEe
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRPI--NIRFIE 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g~--~~~~~~ 160 (298)
++.|.||+|+.+++.|+++++. ++++++++++.++++|+ ++.+++++++|.| .+++.++++++.++|. .+.+..
T Consensus 123 ~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~-~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (245)
T 3c8f_A 123 TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNV-KVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLP 200 (245)
T ss_dssp CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTC-CEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCC-EEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEe
Confidence 8999999999999999999985 47999999999999999 9999999998754 4899999999999885 334444
Q ss_pred eecCC
Q 022377 161 FMPFD 165 (298)
Q Consensus 161 ~~p~~ 165 (298)
+.|.+
T Consensus 201 ~~~~~ 205 (245)
T 3c8f_A 201 YHELG 205 (245)
T ss_dssp CCCCS
T ss_pred ccccC
Confidence 44443
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-19 Score=158.46 Aligned_cols=171 Identities=11% Similarity=0.122 Sum_probs=132.4
Q ss_pred CCCCCCHHHHHHHHHHHHh--------------------CCCCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEeC
Q 022377 11 KPQLLSLNEILRLAYLFVT--------------------SGVDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~--------------------~~~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TN 69 (298)
....++.+++...+.+... ..+..|.|+ |||||+++++.++++++++. ++. +.++||
T Consensus 101 ~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~~l~~ll~~~~~~-g~~-i~l~TN 178 (342)
T 2yx0_A 101 PQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKR-GFT-TFIVTN 178 (342)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGSTTHHHHHHHHHHT-TCE-EEEEEC
T ss_pred ccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchhhHHHHHHHHHHC-CCc-EEEEcC
Confidence 3456888887654443321 124679997 99999999999999999985 884 999999
Q ss_pred ccchHhhHHHHHHcC--CCeEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHH
Q 022377 70 GLTLARKLPKLKESG--LTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICD 144 (298)
Q Consensus 70 G~ll~~~~~~l~~~~--~~~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~ 144 (298)
|++ ++.++.|.++| ++.+.||||+++++.|+.+++ .++|++++++++.+++.|+ ++.+++++.+|.|++++.+
T Consensus 179 G~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~~g~-~v~i~~~l~~g~n~~~~~~ 256 (342)
T 2yx0_A 179 GTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPT-RTVVRLTLVKGENMHSPEK 256 (342)
T ss_dssp SCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTTCSS-EEEEEEEECTTTTCCCHHH
T ss_pred CCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHhCCC-CEEEEEEEECCccHHHHHH
Confidence 988 77899999876 999999999999999999997 3469999999999999999 9999999999899999999
Q ss_pred HHHHHhhCCC-eeEEEeeecCCCCC--CcccCCCCHHHHHHHHH
Q 022377 145 FVELTRDRPI-NIRFIEFMPFDGNV--WNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 145 i~~~~~~~g~-~~~~~~~~p~~~~~--~~~~~~~~~~e~~~~i~ 185 (298)
+++++.++|+ .+.+..|.|.+... .......+.+++.+...
T Consensus 257 l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~ 300 (342)
T 2yx0_A 257 YAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAE 300 (342)
T ss_dssp HHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHH
Confidence 9999999887 45555676654332 21223445555554443
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=158.13 Aligned_cols=167 Identities=19% Similarity=0.294 Sum_probs=124.1
Q ss_pred CCCCCCHHHHHHHHHHHHh---------------------CCCCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEe
Q 022377 11 KPQLLSLNEILRLAYLFVT---------------------SGVDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTT 68 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~---------------------~~~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~T 68 (298)
....++.+++...+.+..+ ..+..|.|+ |||||+++++.++++++++. ++. +.++|
T Consensus 86 ~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll~~~l~~li~~~~~~-g~~-~~l~T 163 (311)
T 2z2u_A 86 EPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLYPYLDELIKIFHKN-GFT-TFVVS 163 (311)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGSTTHHHHHHHHHHT-TCE-EEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEeCCcCccchhhHHHHHHHHHHC-CCc-EEEEC
Confidence 3467999998764433311 124679999 89999999999999999995 884 99999
Q ss_pred CccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 69 NGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 69 NG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
||++ ++.++.| +.+.+.||||+.+++.|+.+++. ++|++++++++.+++.| ++.+++++++|.|. ++.+++
T Consensus 164 NG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~~~~~~v~~~i~~l~~~g--~v~i~~~~~~g~n~-~~~~~~ 236 (311)
T 2z2u_A 164 NGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKKEYWESILNTLDILKEKK--RTCIRTTLIRGYND-DILKFV 236 (311)
T ss_dssp CSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CCCHHHHHHHHHHHHHHTTSS--SEEEEEEECTTTTC-CGGGTH
T ss_pred CCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCccchHHHHHHHHHHHHhcC--CEEEEEEEECCcch-hHHHHH
Confidence 9987 4555555 78999999999999999999987 56999999999999987 68999999998898 999999
Q ss_pred HHHhhCCCe-eEEEeeecCCCCC--CcccCCCCHHHHHHHHHH
Q 022377 147 ELTRDRPIN-IRFIEFMPFDGNV--WNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 147 ~~~~~~g~~-~~~~~~~p~~~~~--~~~~~~~~~~e~~~~i~~ 186 (298)
+++.++|++ +.+..|+|.+... +......+.+++.+.+..
T Consensus 237 ~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~ 279 (311)
T 2z2u_A 237 ELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKM 279 (311)
T ss_dssp HHHHHHTCSEEEEEECC------------CCCCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHHHHH
Confidence 999998874 5667788876554 332345667776665544
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-18 Score=156.07 Aligned_cols=212 Identities=13% Similarity=0.138 Sum_probs=150.1
Q ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCc-c----ch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNG-L----TL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG-~----ll-~~~~~~l~~ 82 (298)
...|+.+++.++++.+.+ .++..|.|+|||||++++ +.++++++++..++..+.+.||| . ++ ++.++.|.+
T Consensus 142 ~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~ 221 (416)
T 2a5h_A 142 DDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKK 221 (416)
T ss_dssp SSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGG
T ss_pred cCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCHHHHHHHHHHHHhcCCccEEEEEecccccccccCCHHHHHHHHh
Confidence 357999999999999988 688999999999999998 88999999986566568999999 2 33 567888887
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCeeEEEe
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~~~~~~ 160 (298)
+ +.+.||+|+.++. .++ +.++++++.++++|+ .+.+++|+++|.|++ ++.++++++.++|+...++.
T Consensus 222 ~--~~v~Isl~~~~~~---ei~-----~~v~~ai~~L~~aGi-~v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~ 290 (416)
T 2a5h_A 222 Y--HPVWLNTHFNHPN---EIT-----EESTRACQLLADAGV-PLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIY 290 (416)
T ss_dssp G--CSEEEEECCCSGG---GCC-----HHHHHHHHHHHHTTC-CEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred c--CcEEEEEecCCHH---HHh-----HHHHHHHHHHHHcCC-EEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 6 7799999986652 333 899999999999999 999999999988865 49999999999999877788
Q ss_pred eecCCC-CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCCCe-EEEeccc
Q 022377 161 FMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGCNR-LRLLADG 237 (298)
Q Consensus 161 ~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~~~-~~I~~dG 237 (298)
++|.+. ..+.. .+..+..+.+.+....+... ..+......++..+.+.+. ....| .+++. +.-++.|
T Consensus 291 ~~~~~~g~~~~~---~~~~~~~eil~~l~~~~~G~----~~p~~v~~~pgg~gk~~~~---p~y~~~~~~~~~~~~~~~g 360 (416)
T 2a5h_A 291 QCDLSLGLEHFR---TPVSKGIEIIEGLRGHTSGY----CVPTFVVDAPGGGGKTPVM---PNYVISQSHDKVILRNFEG 360 (416)
T ss_dssp CCCCBTTCGGGC---CCHHHHHHHHHTTBTTBCGG----GCCEEEEEETTTTEEEECC---CCCEEEEETTEEEEECTTC
T ss_pred ecCCCCCccccc---CCcccHHHHHHHHHHHCCCC----CCceEEEECCCCCCceeec---hhheeccCCCEEEEEcCCC
Confidence 887643 33322 34444444443322111111 0122233455444443321 11223 23343 5578999
Q ss_pred ceeecCC
Q 022377 238 NFKVCLF 244 (298)
Q Consensus 238 ~v~pC~~ 244 (298)
.++.|..
T Consensus 361 ~~~~~~~ 367 (416)
T 2a5h_A 361 VITTYSE 367 (416)
T ss_dssp CEEEEEC
T ss_pred CEEEccC
Confidence 9999965
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-17 Score=147.17 Aligned_cols=156 Identities=19% Similarity=0.312 Sum_probs=124.7
Q ss_pred CCCCCHHHHHHHHHHHHh----------CCCCEEEEc-CCccCcccc-HHHHHHHHhccCCC-----CcEEEEeCccchH
Q 022377 12 PQLLSLNEILRLAYLFVT----------SGVDKIRLT-GGEPTVRKD-IEEACFHLSKLKGL-----KTLAMTTNGLTLA 74 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~----------~~~~~v~~t-GGEPll~~~-~~~ii~~~~~~~~~-----~~v~i~TNG~ll~ 74 (298)
...|+.+|+...+..+.. .++..|.|+ |||||++++ +.++++.+++..|+ . +.++|||++
T Consensus 140 ~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~-itlsTnG~~-- 216 (404)
T 3rfa_A 140 NRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRR-VTLSTSGVV-- 216 (404)
T ss_dssp EEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGG-EEEEESCCH--
T ss_pred CCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCc-eEEECCCcH--
Confidence 457999998876655433 246789999 699999976 67999999884477 5 999999976
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHH-HcCC--CCEEEEEEEecCCCH--hHHHHHH
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAI-EVGY--NPVKVNCVVMRGFND--DEICDFV 146 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~-~~g~--~~v~i~~vi~~~~n~--~~i~~i~ 146 (298)
+.+++|.+.....+.||||+++++.|+++++ ..+++.++++++.+. +.|. .++.+++++.+|.|+ +++.+++
T Consensus 217 p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La 296 (404)
T 3rfa_A 217 PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 (404)
T ss_dssp HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHH
T ss_pred HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHH
Confidence 4578888775567889999999999999985 346999999996554 5554 269999999999986 4699999
Q ss_pred HHHhhCCCeeEEEeeecCCCCCCc
Q 022377 147 ELTRDRPINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 147 ~~~~~~g~~~~~~~~~p~~~~~~~ 170 (298)
+++..+++.+.+++|.|+....+.
T Consensus 297 ~ll~~l~~~VnLIpynP~~~~~~~ 320 (404)
T 3rfa_A 297 ELLKDTPCKINLIPWNPFPGAPYG 320 (404)
T ss_dssp HHTTTSCEEEEEEECCCCTTCCCC
T ss_pred HHHHcCCCcEEEEeccCCCCCCCC
Confidence 999998888888888887655443
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-17 Score=144.10 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=142.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
..|+.|++.+.++++.+.|+..|.|+||| |+++ +.+.++++.+++. ++. +. +|+|.+..+.++.|+++|++.+.+
T Consensus 82 ~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~-~~~-i~-~s~g~l~~e~l~~L~~ag~~~v~i 158 (348)
T 3iix_A 82 YRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKM-GVA-VT-LSLGEWPREYYEKWKEAGADRYLL 158 (348)
T ss_dssp CBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTT-SCE-EE-EECCCCCHHHHHHHHHHTCCEEEC
T ss_pred eeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhc-Cce-EE-EecCCCCHHHHHHHHHhCCCEEee
Confidence 35999999999999999999999999999 8888 4577999999985 663 55 366766688999999999999999
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-CCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCC
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-GFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNV 168 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~ 168 (298)
|+++.+++.++.+++..++++++++++.+++.|+ .+.+.+++.- +.+.+++.++++++.+++++ +.+..|.|..++.
T Consensus 159 ~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~ 237 (348)
T 3iix_A 159 RHETANPVLHRKLRPDTSFENRLNCLLTLKELGY-ETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTP 237 (348)
T ss_dssp CCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTC-EEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTST
T ss_pred eeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCC-eeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCC
Confidence 9999999999999988899999999999999999 7777665553 77899999999999999884 6777888887776
Q ss_pred CcccCCCCHHHHHHHHH
Q 022377 169 WNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 169 ~~~~~~~~~~e~~~~i~ 185 (298)
+......+.++.++.++
T Consensus 238 l~~~~~~~~~e~~~~~a 254 (348)
T 3iix_A 238 LANEKKGDFTLTLKMVA 254 (348)
T ss_dssp TTTSCCCCHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHH
Confidence 65555566666655443
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=130.80 Aligned_cols=168 Identities=16% Similarity=0.237 Sum_probs=138.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCC--ccCcc--ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGG--EPTVR--KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGG--EPll~--~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
...++.+++.+.++++.+.|+..|.|+|| ||... ..+.++++.+++. ++. +. .|||++..+.++.|+++|++.
T Consensus 96 ~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~-g~~-i~-~t~G~l~~e~l~~L~~aGvd~ 172 (369)
T 1r30_A 96 ERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-GLE-AC-MTLGTLSESQAQRLANAGLDY 172 (369)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHT-TSE-EE-EECSSCCHHHHHHHHHHCCCE
T ss_pred cccCCHHHHHHHHHHHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHc-CCe-EE-EecCCCCHHHHHHHHHCCCCE
Confidence 45699999999999998899999999864 46543 4577999999984 885 76 599987788999999999999
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC--C-eeEEEeeecC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP--I-NIRFIEFMPF 164 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g--~-~~~~~~~~p~ 164 (298)
+++++++ +++.|+.+++..+++.++++++.++++|+ ++.+.+++.-+.+.+++.++++++.+++ + .+.+..+.|.
T Consensus 173 v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~ 250 (369)
T 1r30_A 173 YNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKV 250 (369)
T ss_dssp EECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHHHC-EEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCC
T ss_pred EeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeec
Confidence 9999999 89999999998889999999999999999 7776655544578899999999999987 4 5677788888
Q ss_pred CCCCCcccCCCCHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTV 184 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i 184 (298)
.++.+......+.++..+.+
T Consensus 251 ~gT~l~~~~~~~~~~~~~~~ 270 (369)
T 1r30_A 251 KGTPLADNDDVDAFDFIRTI 270 (369)
T ss_dssp TTSTTSSCCCCCHHHHHHHH
T ss_pred CCCcCCCCCCCCHHHHHHHH
Confidence 77766554556666655543
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-15 Score=131.63 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=140.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc---ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR---KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~---~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
...|+.|++.+.++++.+.|+..|.|+||| |+.. .++.++++.+++..++. +.+ |.|.+..+.++.|+++|++.
T Consensus 88 ~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~-i~~-s~g~~~~e~l~~L~~aG~~~ 165 (350)
T 3t7v_A 88 RYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLP-IMI-SPGLMDNATLLKAREKGANF 165 (350)
T ss_dssp CCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSC-EEE-ECSSCCHHHHHHHHHTTEEE
T ss_pred ceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCce-EEE-eCCCCCHHHHHHHHHcCCCE
Confidence 335899999999999999999999999999 9876 34679999988644774 654 56666678999999999999
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
+.+++++.+++.++.+++..+++..+++++.+++.|+ ++...+++.-+++.+++.+.++++.+++++ +.+..|.|..+
T Consensus 166 i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p~~g 244 (350)
T 3t7v_A 166 LALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGY-CVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQEG 244 (350)
T ss_dssp EECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTC-EEEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCCCTT
T ss_pred EEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eEccceEeecCCCHHHHHHHHHHHHhCCCCEEEecceeeCCC
Confidence 9999999999999999988889999999999999999 777776666567889999999999999984 78888999776
Q ss_pred CCCcccCCCC---HHHHHHHHHHhC
Q 022377 167 NVWNVKKLVP---YAEMLDTVVKKF 188 (298)
Q Consensus 167 ~~~~~~~~~~---~~e~~~~i~~~~ 188 (298)
+++......+ ..+++.......
T Consensus 245 T~l~~~~~~~~~e~l~~ia~~Rl~l 269 (350)
T 3t7v_A 245 TPLEGFRDKSNLSELKIISVLRLMF 269 (350)
T ss_dssp STTTTCCCCCCCCHHHHHHHHHHHS
T ss_pred CcCccCCCCChHHHHHHHHHHHHhC
Confidence 6554433333 344444444334
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-11 Score=106.78 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=125.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCc-------cccHHHHHHHHhccCCCCcEEE-EeCccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV-------RKDIEEACFHLSKLKGLKTLAM-TTNGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll-------~~~~~~ii~~~~~~~~~~~v~i-~TNG~ll-~~~~~~l~ 81 (298)
+....+.+++.+-++.+.+.|++.|.|+|++++. .+++.++++.+++..++..+.+ +||+..+ ++.++.|.
T Consensus 29 ~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~ 108 (304)
T 2qgq_A 29 SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAML 108 (304)
T ss_dssp CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHH
T ss_pred CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHH
Confidence 3457899999999999988999999999877665 3568899999988656643555 4788777 56899999
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH--cCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-e
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE--VGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~--~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
+++ +..+.+++++.+++..+.+++..+++.++++++.+++ .|+ .+...+++ .||++.+++.+.++++.++++ .
T Consensus 109 ~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi-~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~ 187 (304)
T 2qgq_A 109 ELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDA-VLRTSIIVGFPGETEEDFEELKQFVEEIQFDK 187 (304)
T ss_dssp HCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTC-EEEEEEEECCTTCCHHHHHHHHHHHHHHCCSE
T ss_pred hCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 998 8999999999999999999888889999999999999 466 55555444 378899999999999999988 4
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+..|.|..++..
T Consensus 188 v~~~~~~p~pgT~~ 201 (304)
T 2qgq_A 188 LGAFVYSDEEGTVA 201 (304)
T ss_dssp EEEEECCC------
T ss_pred EEEEEeeCCCCChh
Confidence 67778888765543
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=112.72 Aligned_cols=134 Identities=12% Similarity=0.243 Sum_probs=113.0
Q ss_pred CCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 32 VDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 32 ~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
+..|.|.||+|++. .++.++++.+++.. .. .+++.||+..+ ++.++.|+++|++.|++++++.++++.+.++
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~~~~-eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~ 183 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADA-EISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN 183 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEEEE-EEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCCCCc-EEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC
Confidence 56889999999964 35779999988732 24 48899999877 5789999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
+..+++.++++++.++++|+..+.+.+++ .||++.+++.+.++++.++++ .+.+..+.|...
T Consensus 184 R~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~ 247 (457)
T 1olt_A 184 REQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPT 247 (457)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcC
Confidence 98899999999999999999328777655 578999999999999999998 467777775544
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.7e-06 Score=73.32 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=118.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC-----ccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG-----EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGG-----EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
||+|.|.. ...++.++..++++.+.+.|+..|-++++ +|.+. +..++++.+++..+.. +.+.+ ...+.
T Consensus 13 lRDG~Q~~--~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~-d~~~~~~~~~~~~~~~-~~~l~---~~~~~ 85 (298)
T 2cw6_A 13 PRDGLQNE--KNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMG-DHTEVLKGIQKFPGIN-YPVLT---PNLKG 85 (298)
T ss_dssp TTHHHHTC--SSCCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGT-THHHHHHHSCCCTTCB-CCEEC---CSHHH
T ss_pred CCcccCCC--CCCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccC-CHHHHHHHHhhCCCCE-EEEEc---CCHHh
Confidence 45554443 46799999999999999999999888765 68774 6677888877644553 44332 12456
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe-------cCCCHhHHHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM-------RGFNDDEICDFVE 147 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~-------~~~n~~~i~~i~~ 147 (298)
++...++|++.|.|++...+......++.. ..++.+.+.++.+++.|+ .+.+++... + .+.+++.++++
T Consensus 86 i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~-~v~~~l~~~~~~~~~~~-~~~~~~~~~~~ 163 (298)
T 2cw6_A 86 FEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANI-SVRGYVSCALGCPYEGK-ISPAKVAEVTK 163 (298)
T ss_dssp HHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTC-EEEEEEETTTCBTTTBS-CCHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEEEeeCCcCCC-CCHHHHHHHHH
Confidence 888899999999998766422223334432 248999999999999999 887766432 3 57889999999
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+.|++. +.+...-+. ..+....++++.+.+.++
T Consensus 164 ~~~~~Ga~~--i~l~DT~G~----~~P~~~~~lv~~l~~~~~ 199 (298)
T 2cw6_A 164 KFYSMGCYE--ISLGDTIGV----GTPGIMKDMLSAVMQEVP 199 (298)
T ss_dssp HHHHTTCSE--EEEEETTSC----CCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCCE--EEecCCCCC----cCHHHHHHHHHHHHHhCC
Confidence 999999852 333332221 012234566667766663
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.8e-06 Score=72.55 Aligned_cols=143 Identities=15% Similarity=0.243 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC---Cc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG---GE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG---GE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
||+|.|.. ...++.++..++++.+.+.|+..|.+++ ++ |.+. +..++++.+.+..+.. +.+.+ ...+.
T Consensus 12 lRDG~Q~~--~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~-~~~e~~~~i~~~~~~~-v~~l~---~n~~~ 84 (295)
T 1ydn_A 12 ARDGLQNE--KRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLA-DSREVMAGIRRADGVR-YSVLV---PNMKG 84 (295)
T ss_dssp TTHHHHTS--SSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGT-THHHHHHHSCCCSSSE-EEEEC---SSHHH
T ss_pred CCccccCC--CCCcCHHHHHHHHHHHHHcCcCEEEEccCcCcccccccc-CHHHHHHHHHhCCCCE-EEEEe---CCHHH
Confidence 45555544 3459999999999999999999888864 55 5555 6678888887754664 54433 12467
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCC----CcHHHHHHHHHHHHHcCCCCEE--EEEEE-----ecCCCHhHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRR----KGHEKVMESINAAIEVGYNPVK--VNCVV-----MRGFNDDEICDF 145 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~----~~~~~v~~~i~~l~~~g~~~v~--i~~vi-----~~~~n~~~i~~i 145 (298)
+++..++|++.|.|++.+ + +.|.+..-. .+++.+.+.++.+++.|+ .|. +.+++ ++ .+.+++.++
T Consensus 85 i~~a~~~G~~~V~i~~~~-S-~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~-~V~~~l~~~~~~e~~~~-~~~~~~~~~ 160 (295)
T 1ydn_A 85 YEAAAAAHADEIAVFISA-S-EGFSKANINCTIAESIERLSPVIGAAINDGL-AIRGYVSCVVECPYDGP-VTPQAVASV 160 (295)
T ss_dssp HHHHHHTTCSEEEEEEES-C-HHHHHHHTSSCHHHHHHHHHHHHHHHHHTTC-EEEEEEECSSEETTTEE-CCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEec-C-HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEEEecCCcCCC-CCHHHHHHH
Confidence 888899999999998766 3 344443221 237777788999999999 777 33333 34 578889999
Q ss_pred HHHHhhCCCe
Q 022377 146 VELTRDRPIN 155 (298)
Q Consensus 146 ~~~~~~~g~~ 155 (298)
++.+.+.|++
T Consensus 161 ~~~~~~~G~d 170 (295)
T 1ydn_A 161 TEQLFSLGCH 170 (295)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHhcCCC
Confidence 9999899986
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0027 Score=55.20 Aligned_cols=145 Identities=15% Similarity=0.161 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC-----CccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG-----GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG-----GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
||+|.|.. ...++.|+..++++.+.+.|+..|-... .-|.+ .+..++++.+.+..+.. +.+.. ...+.
T Consensus 16 lRDG~Q~~--~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~-~d~~~~~~~~~~~~~~~-~~~l~---~~~~~ 88 (302)
T 2ftp_A 16 PRDGLQNE--KQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQM-AGSAEVFAGIRQRPGVT-YAALA---PNLKG 88 (302)
T ss_dssp TTHHHHTS--SSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCCCTTSE-EEEEC---CSHHH
T ss_pred CCCCccCC--CCCCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccc-cCHHHHHHHhhhcCCCE-EEEEe---CCHHH
Confidence 45665554 4679999999999999999998887754 24555 35667777776644553 54433 12457
Q ss_pred HHHHHHcCCCeEEEecCCCCHHh-hhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecC------CCHhHHHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAK-FEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRG------FNDDEICDFVE 147 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~-~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~------~n~~~i~~i~~ 147 (298)
++...++|++.|.|.... ++.+ ...++.. .+++.+.+.++.+++.|+ .|.......-+ .+.+++.++++
T Consensus 89 i~~a~~aG~~~v~i~~~~-s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~-~V~~~l~~~~~~e~~~~~~~~~~~~~~~ 166 (302)
T 2ftp_A 89 FEAALESGVKEVAVFAAA-SEAFSQRNINCSIKDSLERFVPVLEAARQHQV-RVRGYISCVLGCPYDGDVDPRQVAWVAR 166 (302)
T ss_dssp HHHHHHTTCCEEEEEEES-CHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTC-EEEEEEECTTCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHhCCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEEEeeCCcCCCCCHHHHHHHHH
Confidence 888889999999987544 3322 1223221 237778888888899999 77655433211 35677888888
Q ss_pred HHhhCCCe
Q 022377 148 LTRDRPIN 155 (298)
Q Consensus 148 ~~~~~g~~ 155 (298)
.+.+.|++
T Consensus 167 ~~~~~G~d 174 (302)
T 2ftp_A 167 ELQQMGCY 174 (302)
T ss_dssp HHHHTTCS
T ss_pred HHHHcCCC
Confidence 88899986
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0032 Score=57.04 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
||+|.|.. ...|+.++-.++++.+.+.|+..|-. |-|-..|+..+.++.+.+. +.. ..+.+-.....+.++...
T Consensus 47 LRDG~Q~~--~~~~s~eeKl~Ia~~L~~~Gv~~IEv--G~P~asp~d~~~~~~i~~~-~~~-~~v~~~~r~~~~di~~A~ 120 (423)
T 3ivs_A 47 LREGEQFA--NAFFDTEKKIQIAKALDNFGVDYIEL--TSPVASEQSRQDCEAICKL-GLK-CKILTHIRCHMDDARVAV 120 (423)
T ss_dssp TTGGGGST--TCCCCHHHHHHHHHHHHHHTCSEEEE--CCTTSCHHHHHHHHHHHTS-CCS-SEEEEEEESCHHHHHHHH
T ss_pred CCCCCCCC--CCCcCHHHHHHHHHHHHHcCCCEEEE--eecccCHHHHHHHHHHHhc-CCC-CEEEEeeccChhhHHHHH
Confidence 56666654 45799999999999999999998887 3488888877778877774 654 555543332345578888
Q ss_pred HcCCCeEEEecCCCCHHhhhhh--cCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFL--TRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~i--r~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.|.+-.- +.|... +.. ..++.+.+.++.+++.|. .|.+... .++ .+.+.+.++++.+.+.|++
T Consensus 121 ~aG~~~V~i~~s~S--d~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~-~V~~~~eda~r-~d~~~~~~v~~~~~~~Ga~ 195 (423)
T 3ivs_A 121 ETGVDGVDVVIGTS--QYLRKYSHGKDMTYIIDSATEVINFVKSKGI-EVRFSSEDSFR-SDLVDLLSLYKAVDKIGVN 195 (423)
T ss_dssp HTTCSEEEEEEEC---------------CHHHHHHHHHHHHHHTTTC-EEEEEEESGGG-SCHHHHHHHHHHHHHHCCS
T ss_pred HcCCCEEEEEeecc--HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEccCcC-CCHHHHHHHHHHHHHhCCC
Confidence 89999999987653 333322 211 237888889999999998 7776643 334 5677888888888888875
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0021 Score=56.00 Aligned_cols=144 Identities=13% Similarity=0.197 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC-----ccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG-----EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGG-----EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
||+|.|.. ...++.++..++++.+.+.|+..|-...+ -|.+ .+..++++.+.+..+.. +...+- -.+.
T Consensus 14 lRDG~Q~~--~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~d~~~~~~~~~~~~~~~-~~~l~~---~~~~ 86 (307)
T 1ydo_A 14 PRDGLQNE--PVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPAL-RDAIDVAKGIDREKGVT-YAALVP---NQRG 86 (307)
T ss_dssp HHHTGGGS--SSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCCCTTCE-EEEECC---SHHH
T ss_pred CCCCcCCC--CCCCCHHHHHHHHHHHHHcCCCEEEECCCcCccccccc-CCHHHHHHHhhhcCCCe-EEEEeC---CHHh
Confidence 35565544 36799999999999999999998888642 3444 35557777776544543 443331 1346
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhh--hcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEec------CCCHhHHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEF--LTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMR------GFNDDEICDFV 146 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~--ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~------~~n~~~i~~i~ 146 (298)
++...++|++.|.|.+.. ++ .|.. ++.. ..++.+.+.++.+++.|. .+..+....- ..+.+.+.+++
T Consensus 87 i~~a~~~g~~~v~i~~~~-sd-~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~-~v~~~i~~~~~~~~~~~~~~~~~~~~~ 163 (307)
T 1ydo_A 87 LENALEGGINEACVFMSA-SE-THNRKNINKSTSESLHILKQVNNDAQKANL-TTRAYLSTVFGCPYEKDVPIEQVIRLS 163 (307)
T ss_dssp HHHHHHHTCSEEEEEEES-SH-HHHHTTTCSCHHHHHHHHHHHHHHHHHTTC-EEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHHHhCCcCEEEEEeec-CH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEEEEecCCcCCCCCHHHHHHHH
Confidence 888888999999998755 33 3322 2221 137788888999999999 7766554421 14567888899
Q ss_pred HHHhhCCCe
Q 022377 147 ELTRDRPIN 155 (298)
Q Consensus 147 ~~~~~~g~~ 155 (298)
+.+.+.|++
T Consensus 164 ~~~~~~Ga~ 172 (307)
T 1ydo_A 164 EALFEFGIS 172 (307)
T ss_dssp HHHHHHTCS
T ss_pred HHHHhcCCC
Confidence 988888885
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0078 Score=51.98 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhc-cCCCCcEEEEeCcc--chHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-LKGLKTLAMTTNGL--TLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~-~~~~~~v~i~TNG~--ll~~~~~ 78 (298)
||+|.|.. ...++.++-.++++.+.+.|+..|-... |-..|+=.+.++.+.+ ..+.. +...+-+. -++..++
T Consensus 13 lRDG~Q~~--~~~~~~~~K~~i~~~L~~~Gv~~IE~g~--p~~~~~d~e~v~~i~~~~~~~~-i~~l~~~~~~di~~a~~ 87 (293)
T 3ewb_X 13 LRDGEQTP--GVNFDVKEKIQIALQLEKLGIDVIEAGF--PISSPGDFECVKAIAKAIKHCS-VTGLARCVEGDIDRAEE 87 (293)
T ss_dssp TTCCC-------CCCHHHHHHHHHHHHHHTCSEEEEEC--GGGCHHHHHHHHHHHHHCCSSE-EEEEEESSHHHHHHHHH
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCccHHHHHHHHHHhcCCCE-EEEEecCCHHHHHHHHH
Confidence 68877776 6689999999999999999999888764 6666643344444443 23443 44333221 1233455
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhh--hcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEF--LTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~--ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
.+..++.+.|.+.+-. ++ .|.. ++.. ..++.+.+.++.+++.|. .|.+...-....+.+.+.++++.+.+.|+
T Consensus 88 ~~~~ag~~~v~i~~~~-Sd-~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~-~v~~~~~d~~~~~~~~~~~~~~~~~~~G~ 164 (293)
T 3ewb_X 88 ALKDAVSPQIHIFLAT-SD-VHMEYKLKMSRAEVLASIKHHISYARQKFD-VVQFSPEDATRSDRAFLIEAVQTAIDAGA 164 (293)
T ss_dssp HHTTCSSEEEEEEEEC-SH-HHHHHTTCCCHHHHHHHHHHHHHHHHTTCS-CEEEEEETGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHhhcCCCEEEEEecC-cH-HHHHHHhCCCHHHHHHHHHHHHHHHHhCCC-EEEEEeccCCCCCHHHHHHHHHHHHHcCC
Confidence 5556789988888655 33 3322 2221 136777778888888888 77765543222567778899999999998
Q ss_pred eeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCCC
Q 022377 155 NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFPG 190 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~ 190 (298)
+ .+.+....+.. .+....++++.+.+.+++
T Consensus 165 ~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~~ 194 (293)
T 3ewb_X 165 T--VINIPDTVGYT----NPTEFGQLFQDLRREIKQ 194 (293)
T ss_dssp C--EEEEECSSSCC----CHHHHHHHHHHHHHHCTT
T ss_pred C--EEEecCCCCCC----CHHHHHHHHHHHHHhcCC
Confidence 5 33444332221 112355667777777753
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0057 Score=54.95 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. ...|+.++..++++.+.+.|+..|-..+ |-..|...+.++.+.+. +.. ..+.+-..-..+.++...
T Consensus 11 LRDG~Q~~--~~~~~~~~k~~ia~~L~~~Gv~~IE~g~--p~~~~~~~~~~~~i~~~-~~~-~~v~~~~r~~~~di~~a~ 84 (382)
T 2ztj_A 11 LREGEQFE--KANFSTQDKVEIAKALDEFGIEYIEVTT--PVASPQSRKDAEVLASL-GLK-AKVVTHIQCRLDAAKVAV 84 (382)
T ss_dssp ETGGGGST--TCCCCHHHHHHHHHHHHHHTCSEEEECC--TTSCHHHHHHHHHHHTS-CCS-SEEEEEEESCHHHHHHHH
T ss_pred CCcccCCC--CCCcCHHHHHHHHHHHHHcCcCEEEEcC--CcCCHHHHHHHHHHHhc-CCC-cEEEEEcccChhhHHHHH
Confidence 46777765 3589999999999999999999888854 87888877888888874 553 444432222234588888
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCc----HHHHHHHHHHHHHcC--CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVG--YNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g--~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+.+-. + +.|.. .-+.+ ++.+.+.++.+++.| + .+.+...-....+.+.+.++++.+.+. ++
T Consensus 85 ~~g~~~v~i~~~~-s-~~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~-~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~ 159 (382)
T 2ztj_A 85 ETGVQGIDLLFGT-S-KYLRA-PHGRDIPRIIEEAKEVIAYIREAAPHV-EVRFSAEDTFRSEEQDLLAVYEAVAPY-VD 159 (382)
T ss_dssp HTTCSEEEEEECC-----------CCCHHHHHHHHHHHHHHHHHHCTTS-EEEEEETTTTTSCHHHHHHHHHHHGGG-CS
T ss_pred HcCCCEEEEEecc-C-HHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCE-EEEEEEEeCCCCCHHHHHHHHHHHHHh-cC
Confidence 9999999988654 3 33433 22222 677888889999999 6 666655322225667788888888877 54
Q ss_pred eEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 022377 156 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 187 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 187 (298)
.+.+...-+.. .+....++.+.+.+.
T Consensus 160 --~i~l~DT~G~~----~P~~~~~lv~~l~~~ 185 (382)
T 2ztj_A 160 --RVGLADTVGVA----TPRQVYALVREVRRV 185 (382)
T ss_dssp --EEEEEETTSCC----CHHHHHHHHHHHHHH
T ss_pred --EEEecCCCCCC----CHHHHHHHHHHHHHh
Confidence 34444332221 112244556666654
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0049 Score=54.41 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=105.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHH-HHHhCCCCEEEEcCCccCccccHHHHHHHHhc-------cCCCCcEEEEeCccch
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAY-LFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-------LKGLKTLAMTTNGLTL 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~-~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~-------~~~~~~v~i~TNG~ll 73 (298)
||+|.|... ..++.++..++++ .+.+.|+..|-.. -|...++=.+.+..+++ ..+.. +...+.+
T Consensus 27 lRDG~Q~~~--~~~~~~~k~~i~~~~L~~~Gv~~IE~g--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-i~~l~~~--- 98 (337)
T 3ble_A 27 LRDGEQTRG--VSFSTSEKLNIAKFLLQKLNVDRVEIA--SARVSKGELETVQKIMEWAATEQLTERIE-ILGFVDG--- 98 (337)
T ss_dssp HHHHTTSTT--CCCCHHHHHHHHHHHHHTTCCSEEEEE--ETTSCTTHHHHHHHHHHHHHHTTCGGGEE-EEEESST---
T ss_pred CCCCCCCCC--CCcCHHHHHHHHHHHHHHcCCCEEEEe--CCCCChhHHHHHHHHHhhhhhhccCCCCe-EEEEccc---
Confidence 456666654 3599999999999 9999999988874 34444533333333332 12222 3332222
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHH-hhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEE---ecCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPA-KFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVV---MRGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~-~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi---~~~~n~~~i~~i~~ 147 (298)
.+.++...+++++.|.|.+.. ++. ....++.. ..++.+.+.++.+++.|. .+.+.+.- ....+.+.+.++++
T Consensus 99 ~~~i~~a~~~g~~~v~i~~~~-s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (337)
T 3ble_A 99 NKTVDWIKDSGAKVLNLLTKG-SLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGL-KINVYLEDWSNGFRNSPDYVKSLVE 176 (337)
T ss_dssp THHHHHHHHHTCCEEEEEEEC-SHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTC-EEEEEEETHHHHHHHCHHHHHHHHH
T ss_pred hhhHHHHHHCCCCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEEECCCCCcCCHHHHHHHHH
Confidence 126888888999999998765 332 22233332 237888888899999999 77766543 11145677888888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+.|++ .+.+...-+.. .+....++++.+.+.++
T Consensus 177 ~~~~~Ga~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~p 212 (337)
T 3ble_A 177 HLSKEHIE--RIFLPDTLGVL----SPEETFQGVDSLIQKYP 212 (337)
T ss_dssp HHHTSCCS--EEEEECTTCCC----CHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCC--EEEEecCCCCc----CHHHHHHHHHHHHHhcC
Confidence 88888885 33333332221 11234566677777664
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.017 Score=51.59 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhc-cCCCCcEEEEe--CccchHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-LKGLKTLAMTT--NGLTLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~-~~~~~~v~i~T--NG~ll~~~~~ 78 (298)
||+|.|... ..|+.++-.++++.+.+.|+..|-.. =|...|+=.+.++.+.+ ..+.. +...+ |-.-++..++
T Consensus 20 LRDG~Q~~~--~~~~~~~Kl~ia~~L~~~Gv~~IE~g--~p~~~~~d~e~v~~i~~~~~~~~-i~~l~r~~~~di~~a~~ 94 (370)
T 3rmj_A 20 LRDGEQSPG--AAMTKEEKIRVARQLEKLGVDIIEAG--FAAASPGDFEAVNAIAKTITKST-VCSLSRAIERDIRQAGE 94 (370)
T ss_dssp CCCCTTSTT--CCCCHHHHHHHHHHHHHHTCSEEEEE--EGGGCHHHHHHHHHHHTTCSSSE-EEEEEESSHHHHHHHHH
T ss_pred CCccccCCC--CCcCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHhCCCCe-EEEEecCCHHHHHHHHH
Confidence 677777664 37999999999999999999877753 37777754445555444 22332 44333 3222234455
Q ss_pred HHHHcCCCeEEEecCCCCHHhhh--hhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 79 KLKESGLTSVNISLDTLVPAKFE--FLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~--~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
.+..++.+.|.+.+-.. + .|. .++.. ..++.+.+.++.++++|. .+.+.+--....+.+.+.++++.+.+.|+
T Consensus 95 al~~ag~~~v~if~~~S-d-~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga 171 (370)
T 3rmj_A 95 AVAPAPKKRIHTFIATS-P-IHMEYKLKMKPKQVIEAAVKAVKIAREYTD-DVEFSCEDALRSEIDFLAEICGAVIEAGA 171 (370)
T ss_dssp HHTTSSSEEEEEEEECS-H-HHHHHTTCCCHHHHHHHHHHHHHHHTTTCS-CEEEEEETGGGSCHHHHHHHHHHHHHHTC
T ss_pred HHhhCCCCEEEEEecCc-H-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCccCHHHHHHHHHHHHHcCC
Confidence 56668999999887663 3 332 33322 126777777888888888 77766643322677888899999988888
Q ss_pred eeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 155 NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+ .+.+...-+.. .+....++.+.+.+.++
T Consensus 172 ~--~i~l~DT~G~~----~P~~~~~lv~~l~~~~~ 200 (370)
T 3rmj_A 172 T--TINIPDTVGYS----IPYKTEEFFRELIAKTP 200 (370)
T ss_dssp C--EEEEECSSSCC----CHHHHHHHHHHHHHHST
T ss_pred C--EEEecCccCCc----CHHHHHHHHHHHHHhCC
Confidence 5 33344332211 11235566777777664
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=51.92 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhc-cCCCCcEEEEeCcc--chHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-LKGLKTLAMTTNGL--TLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~-~~~~~~v~i~TNG~--ll~~~~~ 78 (298)
||+|.|-. ...|+.++-.++++.+.+.|+..|-.. =|...|+=.+.++.+.+ ..+.. +...+-+. -++..++
T Consensus 14 lRDG~Q~~--~~~~~~~~Kl~ia~~L~~~Gv~~IE~g--~p~~~~~d~e~v~~i~~~~~~~~-i~~l~r~~~~~i~~a~~ 88 (325)
T 3eeg_A 14 LRDGEQVP--GCQLNTEEKIIVAKALDELGVDVIEAG--FPVSSPGDFNSVVEITKAVTRPT-ICALTRAKEADINIAGE 88 (325)
T ss_dssp GGCC---------CCTTHHHHHHHHHHHHTCSEEEEE--CTTSCHHHHHHHHHHHHHCCSSE-EEEECCSCHHHHHHHHH
T ss_pred CCCcccCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHhHHHHHHHHHHhCCCCE-EEEeecCCHHHHHHHHH
Confidence 57777766 568999999999999999999987764 37777753344455444 23443 54443221 2233445
Q ss_pred HHHHcCCCeEEEecCCCCHHhh-hhhc--CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 79 KLKESGLTSVNISLDTLVPAKF-EFLT--RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~-~~ir--~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+..+|++.|.+.+-. ++-.. ..++ ....++.+.+.++.+++.|. .+.+.+......+.+.+.++++.+.+.|++
T Consensus 89 al~~ag~~~v~i~~s~-Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~ 166 (325)
T 3eeg_A 89 ALRFAKRSRIHTGIGS-SDIHIEHKLRSTRENILEMAVAAVKQAKKVVH-EVEFFCEDAGRADQAFLARMVEAVIEAGAD 166 (325)
T ss_dssp HHTTCSSEEEEEEEEC-SHHHHC----CCCTTGGGTTHHHHHHHHTTSS-EEEEEEETGGGSCHHHHHHHHHHHHHHTCS
T ss_pred hhcccCCCEEEEEecc-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEccccccchHHHHHHHHHHHHhcCCC
Confidence 5555599988887655 33221 2222 22358889999999999998 777665433325677788888888888885
Q ss_pred eEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 156 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+...-+.. .+....++++.+.+.++
T Consensus 167 --~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 194 (325)
T 3eeg_A 167 --VVNIPDTTGYM----LPWQYGERIKYLMDNVS 194 (325)
T ss_dssp --EEECCBSSSCC----CHHHHHHHHHHHHHHCS
T ss_pred --EEEecCccCCc----CHHHHHHHHHHHHHhCC
Confidence 33333332221 11235566777777775
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.034 Score=49.12 Aligned_cols=165 Identities=12% Similarity=0.112 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CC-ccCc---cccHHHHHHHHhcc-CCCCcEEEEeC-c
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-----GG-EPTV---RKDIEEACFHLSKL-KGLKTLAMTTN-G 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GG-EPll---~~~~~~ii~~~~~~-~~~~~v~i~TN-G 70 (298)
+|+|.|. ....++.++..++++.+.+.|+..|-+. +| .|.. ..+-.+.++.+++. .+.. +.+.++ +
T Consensus 16 lRDG~Q~--~~~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~-i~~l~~p~ 92 (345)
T 1nvm_A 16 LRDGSHA--IRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQ-IATLLLPG 92 (345)
T ss_dssp TTHHHHH--TTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSE-EEEEECBT
T ss_pred CCcccCC--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCE-EEEEecCC
Confidence 3454444 3667999999999999999999999993 33 3322 22455677777653 3443 554432 3
Q ss_pred cchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 71 LTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 71 ~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
....+.++...++|++.+.|.+.. ++ .+.+.+.++.+++.|+ .+.....-....+.+.+.++++.+.
T Consensus 93 ~~~~~~i~~a~~aGvd~v~I~~~~-s~-----------~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~e~~~~ia~~~~ 159 (345)
T 1nvm_A 93 IGSVHDLKNAYQAGARVVRVATHC-TE-----------ADVSKQHIEYARNLGM-DTVGFLMMSHMIPAEKLAEQGKLME 159 (345)
T ss_dssp TBCHHHHHHHHHHTCCEEEEEEET-TC-----------GGGGHHHHHHHHHHTC-EEEEEEESTTSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhCCcCEEEEEEec-cH-----------HHHHHHHHHHHHHCCC-EEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334667889999999999987532 21 1356677888889999 7766653344356788999999999
Q ss_pred hCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 151 DRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.|++ .+.+....+.. .+....++++.+++.+
T Consensus 160 ~~Ga~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~ 191 (345)
T 1nvm_A 160 SYGAT--CIYMADSGGAM----SMNDIRDRMRAFKAVL 191 (345)
T ss_dssp HHTCS--EEEEECTTCCC----CHHHHHHHHHHHHHHS
T ss_pred HCCCC--EEEECCCcCcc----CHHHHHHHHHHHHHhc
Confidence 88875 33344332221 1123456667777766
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.066 Score=47.51 Aligned_cols=130 Identities=10% Similarity=0.094 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHH-HHhCCCC--EEEEc-CCccCccc---cH-HHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 15 LSLNEILRLAYL-FVTSGVD--KIRLT-GGEPTVRK---DI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 15 l~~e~~~~~i~~-~~~~~~~--~v~~t-GGEPll~~---~~-~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
.+.+++.+-+++ +.+.+.. .|.++ -.+|+.-. .+ .++++.+.+..+. .+++.|-+.+++. +..+...+..
T Consensus 140 vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~~~~~~-~v~i~TKs~lid~-L~~l~~~~~v 217 (368)
T 4fhd_A 140 VNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIGATDYG-RLRFVTKYEHVDH-LLDARHNGKT 217 (368)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHHHCSSE-EEEEEESCCCCGG-GTTCCCTTCE
T ss_pred cCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHHhCCCc-eEEEEeCCcCHHH-HHhcCcCCce
Confidence 446666554443 3333323 34343 26786211 13 4888888775455 4999999987753 3334344555
Q ss_pred eEEEecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCH-hHHHHHHHHH
Q 022377 87 SVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNPVKVNC-VVMRGFND-DEICDFVELT 149 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~-~~i~~i~~~~ 149 (298)
.|++||.. ++..+.+-. ..+.++-+++++.|.++|+ ++.+.+ -+.++.+. ++..++++.+
T Consensus 218 ~V~~Sitt--~~l~r~~EP~aps~~~RL~Ai~~l~~aGi-pv~v~iaPIiP~~~~~e~y~~lle~l 280 (368)
T 4fhd_A 218 RFRFSINS--RYVINHFEPGTSSFDGRLAAARKVAGAGY-KLGFVVAPIYRHEGWERGYFELFQEL 280 (368)
T ss_dssp EEEEEECC--HHHHHHHCTTSCCHHHHHHHHHHHHHTTC-EEEEEEEEECCCTTHHHHHHHHHHHH
T ss_pred EEEEEEcC--HHHHHHcCCCCCCHHHHHHHHHHHHHCCC-eEEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 68889865 555555554 4569999999999999999 888876 66775554 3455555533
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.21 Score=45.84 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc------cCccccHHHHHHHHhcc-CCCCcEEEEeCccc-----------hH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGLT-----------LA 74 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE------Pll~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-----------l~ 74 (298)
..|+.++..++++.+.+.|+..|-..||- .++.++-.+.++.+++. .+.. +.+.+.|.. .+
T Consensus 25 ~~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~-l~~l~R~~N~~G~~~~~ddv~~ 103 (464)
T 2nx9_A 25 TRLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTP-LQMLLRGQNLLGYRHYADDVVD 103 (464)
T ss_dssp TCCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSC-EEEEECGGGTTSSSCCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCe-EEEEeccccccCcccccchhhH
Confidence 46899999999999999999999997654 35677777777777652 4554 666665431 24
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhHHHHHHHHHhhC
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDEICDFVELTRDR 152 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~i~~i~~~~~~~ 152 (298)
..++...++|++.|.|.....+ .+.+.+.++.+++.|. .+...+ +.....+.+.+.++++.+.+.
T Consensus 104 ~~v~~a~~~Gvd~i~if~~~sd------------~~ni~~~i~~ak~~G~-~v~~~i~~~~~~~~~~e~~~~~a~~l~~~ 170 (464)
T 2nx9_A 104 TFVERAVKNGMDVFRVFDAMND------------VRNMQQALQAVKKMGA-HAQGTLCYTTSPVHNLQTWVDVAQQLAEL 170 (464)
T ss_dssp HHHHHHHHTTCCEEEECCTTCC------------THHHHHHHHHHHHTTC-EEEEEEECCCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCcCEEEEEEecCH------------HHHHHHHHHHHHHCCC-EEEEEEEeeeCCCCCHHHHHHHHHHHHHC
Confidence 4678888999999998754322 1467788999999998 775544 333335778888999989899
Q ss_pred CCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 153 PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 153 g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
|++ .+.+...-+.. .+....++.+.+.+.+
T Consensus 171 Gad--~I~l~DT~G~~----~P~~v~~lv~~l~~~~ 200 (464)
T 2nx9_A 171 GVD--SIALKDMAGIL----TPYAAEELVSTLKKQV 200 (464)
T ss_dssp TCS--EEEEEETTSCC----CHHHHHHHHHHHHHHC
T ss_pred CCC--EEEEcCCCCCc----CHHHHHHHHHHHHHhc
Confidence 985 34444332221 1123456666666655
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.22 Score=46.46 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc------cCccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------chH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TLA 74 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE------Pll~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll~ 74 (298)
..|+.++..++++.+.+.|+..|-..||- .++.++-.+.++.+++. .+.. +.+.+-|. +.+
T Consensus 42 ~~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~-l~~L~R~~N~~G~~~ypddv~~ 120 (539)
T 1rqb_A 42 TRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSR-LQMLLRGQNLLGYRHYNDEVVD 120 (539)
T ss_dssp TCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSC-EEEEECGGGTTSSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCE-EEEEeccccccCcccCcccccH
Confidence 46899999999999999999999998654 36677767777777652 4554 66665322 134
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhHHHHHHHHHhhC
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDEICDFVELTRDR 152 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~i~~i~~~~~~~ 152 (298)
+.++...++|++.|.|.....+ .+.+.+.++.+++.|. .+...+ +.....+.+.+.++++.+.+.
T Consensus 121 ~~ve~a~~aGvd~vrIf~s~sd------------~~ni~~~i~~ak~~G~-~v~~~i~~~~~~~~~~e~~~~~a~~l~~~ 187 (539)
T 1rqb_A 121 RFVDKSAENGMDVFRVFDAMND------------PRNMAHAMAAVKKAGK-HAQGTICYTISPVHTVEGYVKLAGQLLDM 187 (539)
T ss_dssp HHHHHHHHTTCCEEEECCTTCC------------THHHHHHHHHHHHTTC-EEEEEEECCCSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCEEEEEEehhH------------HHHHHHHHHHHHHCCC-eEEEEEEeeeCCCCCHHHHHHHHHHHHHc
Confidence 5688899999999998744322 1567889999999998 775444 333335778888999988888
Q ss_pred CCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 153 PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 153 g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
|++ .+.+...-+.. .+....++.+.+.+.+
T Consensus 188 Gad--~I~L~DT~G~~----~P~~v~~lv~~l~~~~ 217 (539)
T 1rqb_A 188 GAD--SIALKDMAALL----KPQPAYDIIKAIKDTY 217 (539)
T ss_dssp TCS--EEEEEETTCCC----CHHHHHHHHHHHHHHH
T ss_pred CCC--EEEeCCCCCCc----CHHHHHHHHHHHHHhc
Confidence 985 34444332221 1123456666776665
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.21 Score=42.62 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEc----CCccCccccH-HHHHHHHhcc-CCCCcEEEEeCccch---HhhHHHHHHc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLT----GGEPTVRKDI-EEACFHLSKL-KGLKTLAMTTNGLTL---ARKLPKLKES 83 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~t----GGEPll~~~~-~~ii~~~~~~-~~~~~v~i~TNG~ll---~~~~~~l~~~ 83 (298)
-.+|++|+.+-..+..+.|...|.+. .|.|.+.++. .++++.+++. .++- +.++|.|... ++++..+ +.
T Consensus 29 lPvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~i-i~~TTg~~~~~~~eeR~~~~-~~ 106 (282)
T 2y7e_A 29 LPITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEII-IQISTGGAVGESFDKRLAPL-AL 106 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSE-EEECSSCSTTCCHHHHHGGG-GG
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeE-EEeCCCCCCCCCHHHHHHHh-hc
Confidence 34899999988888888898888886 4889999984 5999999975 4784 9999976632 3455555 55
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
..+..++++-+.+ +....-..+++.+.+.++.+++.|+ .+++.+ ++...+..+..++.+
T Consensus 107 ~Pe~asl~~gs~N---f~~~v~~n~~~~~~~~~~~~~e~Gv-~pE~e~-----fd~g~l~~~~~l~~~ 165 (282)
T 2y7e_A 107 KPEMATLNAGTLN---FGDDIFINHPADIIRLAEAFKQYNV-VPEVEV-----YESGMVDAVARLIKK 165 (282)
T ss_dssp CCSEEEEECCCEE---ETTEEECCCHHHHHHHHHHHHHTTC-EEEEEE-----CSHHHHHHHHHHHHT
T ss_pred CCCEEEecccccc---cccccccCCHHHHHHHHHHHHHcCC-eEEEEE-----ECHHHHHHHHHHHHc
Confidence 6787777764432 2111123568999999999999999 777766 577888887777765
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.37 Score=41.70 Aligned_cols=135 Identities=12% Similarity=0.191 Sum_probs=94.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCccCcccc-HHHHHHHHhccCCCCcEEEEeCccc-----hHhhHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLT-----LARKLPK 79 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~l-----l~~~~~~ 79 (298)
+.-.+|+||+.+-..+..+.|...|+++ -|.|.+.++ +.++++.+++..++- +.++|-|.. ..+.+..
T Consensus 25 P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~i-I~~TTgg~~~~~~~~eeR~~~ 103 (314)
T 3lot_A 25 PYLPVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDVV-INVTTGGGGTLGIPVEERAKV 103 (314)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCCE-EEECSSTTGGGTCCHHHHTTH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCeE-EEeCCCCcCCCCCCHHHHHHH
Confidence 3456999999888888888898888886 278899987 559999998866874 888887652 2345555
Q ss_pred HHHcCCCeEEEecCCCCH------Hhh----------------hhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 022377 80 LKESGLTSVNISLDTLVP------AKF----------------EFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF 137 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~------~~~----------------~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~ 137 (298)
+.+...+..++++-+.+= +.+ +.+-. .+++.+.+.++.+++.|+ .+++.+ +
T Consensus 104 ~~~~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~-N~~~~i~~~~~~~~e~Gi-~pE~e~-----f 176 (314)
T 3lot_A 104 VPALKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR-NTFKDLEALSRIFKENDT-KPELEC-----Y 176 (314)
T ss_dssp HHHHCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC-CCHHHHHHHHHHHHHHTC-EEEEEE-----C
T ss_pred HHhcCCceeeecCCCcccccccccccccccccccchhhcccCCCceec-CCHHHHHHHHHHHHHcCC-EEEEEE-----E
Confidence 555566766666532210 000 11111 368899999999999999 787766 5
Q ss_pred CHhHHHHHHHHHhhCCC
Q 022377 138 NDDEICDFVELTRDRPI 154 (298)
Q Consensus 138 n~~~i~~i~~~~~~~g~ 154 (298)
+...+..+..++.+ |+
T Consensus 177 d~g~l~~~~~l~~~-Gl 192 (314)
T 3lot_A 177 DIGQIYNTAFMFHE-GY 192 (314)
T ss_dssp SHHHHHHHHHHHHT-TC
T ss_pred CHHHHHHHHHHHHC-CC
Confidence 77888888777665 54
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=95.10 E-value=1.2 Score=36.98 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccch---------HhhHHHHHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTL---------ARKLPKLKE 82 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll---------~~~~~~l~~ 82 (298)
-|++..+..+++.+..+ +..+.|.+|--.+.|. +.+.++.++++ ++ .+.|-|+++ ++.++..++
T Consensus 22 glg~~~~~d~Le~~g~y-ID~lKfg~Gt~~l~~~~~l~eki~l~~~~-gV---~v~~GGTl~E~~~~qg~~~~yl~~~k~ 96 (251)
T 1qwg_A 22 GLPPKFVEDYLKVCGDY-IDFVKFGWGTSAVIDRDVVKEKINYYKDW-GI---KVYPGGTLFEYAYSKGKFDEFLNECEK 96 (251)
T ss_dssp SCCHHHHHHHHHHHGGG-CSEEEECTTGGGGSCHHHHHHHHHHHHTT-TC---EEEECHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhh-cceEEecCceeeecCHHHHHHHHHHHHHc-CC---eEECCcHHHHHHHHcCcHHHHHHHHHH
Confidence 38999999999887666 7899999999999987 77999999986 65 578889743 356788888
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--------hHHHHHHHHHhhCCC
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--------DEICDFVELTRDRPI 154 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--------~~i~~i~~~~~~~g~ 154 (298)
.|++.|-|| ||.-+ -+.+.-.+.|+.+++.|+ .|...+ .. .+. .++.+.++...+.|+
T Consensus 97 lGf~~iEiS-~G~i~---------l~~~~~~~~I~~~~~~G~-~v~~Ev--G~-k~~~~~~~~~~~~~I~~~~~~LeAGA 162 (251)
T 1qwg_A 97 LGFEAVEIS-DGSSD---------ISLEERNNAIKRAKDNGF-MVLTEV--GK-KMPDKDKQLTIDDRIKLINFDLDAGA 162 (251)
T ss_dssp HTCCEEEEC-CSSSC---------CCHHHHHHHHHHHHHTTC-EEEEEE--CC-SSHHHHTTCCHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEC-CCccc---------CCHHHHHHHHHHHHHCCC-EEeeec--cc-cCCcccCCCCHHHHHHHHHHHHHCCC
Confidence 999999999 55321 246788889999999999 653333 22 222 344444444445687
Q ss_pred eeEEEeee
Q 022377 155 NIRFIEFM 162 (298)
Q Consensus 155 ~~~~~~~~ 162 (298)
....++-.
T Consensus 163 ~~ViiEar 170 (251)
T 1qwg_A 163 DYVIIEGR 170 (251)
T ss_dssp SEEEECCT
T ss_pred cEEEEeee
Confidence 65555433
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.32 Score=41.46 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEc----CCccCccccH-HHHHHHHhcc-CCCCcEEEEeCccch--HhhHHHHHHcC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLT----GGEPTVRKDI-EEACFHLSKL-KGLKTLAMTTNGLTL--ARKLPKLKESG 84 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~t----GGEPll~~~~-~~ii~~~~~~-~~~~~v~i~TNG~ll--~~~~~~l~~~~ 84 (298)
-.+|+||+.+-..+..+.|...|+++ -|.|.+.++. .++++.+++. .++- +.++|.|... .+++..+ ...
T Consensus 29 lPvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~i-i~~TTgg~~~~~eeR~~~~-~~~ 106 (284)
T 3chv_A 29 VPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMI-VQFSTGGRSGAGQARGGML-PLK 106 (284)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCE-EEECCCTTTCCGGGGGTTG-GGC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeE-EEeCCCCCCCCHHHHHHhh-hcC
Confidence 34899999988888888998888886 3889999984 5999999975 3784 9999976533 3455555 556
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
.+..++++-+.+ +....-..+++.+.+.++.+++.|+ .+++.+ ++...+..+..++.+ |+
T Consensus 107 Pe~aSl~~Gs~N---f~~~v~~n~~~~~~~~~~~~~e~Gv-~pE~e~-----fd~g~l~~~~~l~~~-Gl 166 (284)
T 3chv_A 107 PDMASLSVGSNN---FPSRVYENPPDLVDWLAAQMRSYRV-TPEIEA-----FDLSHILRAIDMHGR-GL 166 (284)
T ss_dssp CSEEEECCSCEE---CSSSEECCCHHHHHHHHHHHHHHTC-EEEEEE-----SSHHHHHHHHHHHHT-TC
T ss_pred CCEEEecCcccc---cCCccccCCHHHHHHHHHHHHHcCC-EEEEEE-----ECHHHHHHHHHHHHc-CC
Confidence 787766664432 1111112468999999999999999 777766 577888887666654 54
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.55 Score=40.64 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEc-----CCccCccccH-HHHHHHHhcc-CCCCcEEEEeC------cc--------
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKDI-EEACFHLSKL-KGLKTLAMTTN------GL-------- 71 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGEPll~~~~-~~ii~~~~~~-~~~~~v~i~TN------G~-------- 71 (298)
-.+|++|+.+-..+..+.|...|.++ -|.|.+.++. .++++.+++. .++- +.++|. |.
T Consensus 43 lPvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~i-i~~TTg~gg~~~g~~~~p~~~~ 121 (316)
T 3c6c_A 43 MPITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIV-LNLTCGLGAFLLPDPEDESKAL 121 (316)
T ss_dssp CCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCE-EEEECCCSEEECEETTEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCeE-EEeCCCccccccCcccCccccc
Confidence 34899999988888888898888885 3789998874 5999999985 5784 999996 43
Q ss_pred ------chHhhHHHHHHcCCCeEEEecCCCCH--HhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHH
Q 022377 72 ------TLARKLPKLKESGLTSVNISLDTLVP--AKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEIC 143 (298)
Q Consensus 72 ------ll~~~~~~l~~~~~~~v~iSldg~~~--~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~ 143 (298)
-.++++..+.....+..++++-+.+- ..-+.+- ..+++.+.+.++.+++.|+ .+++.+ ++...+.
T Consensus 122 ~~~~l~~~eeR~~~~~~~~Pe~aSl~~Gs~Nf~~~~~~~v~-~n~~~~i~~~~~~~~e~Gv-~pE~e~-----fd~g~l~ 194 (316)
T 3c6c_A 122 PESDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFVY-LNTTRTLRAMARRFQELGI-KPELEV-----FSPGDIL 194 (316)
T ss_dssp TTCEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEEE-CCCHHHHHHHHHHHHHHTC-EEEEEE-----SSHHHHH
T ss_pred cccccCCHHHHHHHHHhcCCCeEEeccccccccCCCCceee-cCCHHHHHHHHHHHHHcCC-eEEEEE-----ECHHHHH
Confidence 23445555544467877676554331 0001111 2568999999999999999 787766 5778887
Q ss_pred HHHHHHhhCCC
Q 022377 144 DFVELTRDRPI 154 (298)
Q Consensus 144 ~i~~~~~~~g~ 154 (298)
....++.+ |+
T Consensus 195 ~~~~l~~~-Gl 204 (316)
T 3c6c_A 195 FGKQLIEE-GL 204 (316)
T ss_dssp HHHHHHHT-TC
T ss_pred HHHHHHHc-CC
Confidence 77776654 44
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.46 Score=41.07 Aligned_cols=135 Identities=11% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCccCccccHH-HHHHHHhccCCCCcEEEEeCccch---HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTL---ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll---~~~~~~l~ 81 (298)
+.-.+|++|+.+-..+..+.|...|+++ -|.|.+.++.. ++++.+++..+.- +.++|-|... .+.+..+.
T Consensus 25 P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~i-I~~TTgg~~~~~~eerla~~~ 103 (311)
T 3e49_A 25 PYLPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAV-INLTTGGSPHMTVEERLRPAT 103 (311)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCE-EEECSCSCTTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcE-EEECCCCCCCCCHHHHHHHHH
Confidence 3456999999888888888898888886 28899999754 9999998765663 7788876543 34666665
Q ss_pred HcCCCeEEEecCCCC------HHhhh----------------hhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH
Q 022377 82 ESGLTSVNISLDTLV------PAKFE----------------FLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND 139 (298)
Q Consensus 82 ~~~~~~v~iSldg~~------~~~~~----------------~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~ 139 (298)
....+..++++-+.+ .+.|+ .+- ..+++.+.+.++.+++.|+ .+++.+ ++.
T Consensus 104 ~~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~n~~~~i~~~~~~~~e~Gi-~pE~e~-----fd~ 176 (311)
T 3e49_A 104 HYMPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVF-KNTFADIEFILKTCGGNGT-RFEFEC-----YDT 176 (311)
T ss_dssp HHCCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEE-CCCHHHHHHHHHHHHTTTC-EEEEEE-----CSH
T ss_pred hcCCCeeeecCCCcccccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCC-eeEEEE-----ECH
Confidence 556776666643321 00111 111 1358889999999999999 787766 577
Q ss_pred hHHHHHHHHHhhCCC
Q 022377 140 DEICDFVELTRDRPI 154 (298)
Q Consensus 140 ~~i~~i~~~~~~~g~ 154 (298)
..+..+..++.+ |+
T Consensus 177 g~l~~~~~l~~~-Gl 190 (311)
T 3e49_A 177 SHLYNLAHFVDR-KL 190 (311)
T ss_dssp HHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHc-CC
Confidence 888887777665 54
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.42 Score=41.34 Aligned_cols=136 Identities=14% Similarity=0.227 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCccCccccHH-HHHHHHhccCCCCcEEEEeCccch---HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTL---ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll---~~~~~~l~ 81 (298)
+.-.+|++|+.+-..+..+.|...|+++ -|.|.+.++.. ++++.+++..+.- +.++|-|... .+.+..+.
T Consensus 25 P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~i-I~~TTgg~~~~~~eerla~~~ 103 (311)
T 3e02_A 25 PYLPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDAI-LNITTGGGLGMSLDERLAPAR 103 (311)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCCE-EEECSSCSTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcE-EEECCCCCCCCCHHHHHHHHH
Confidence 3456999999888888888898888886 28899999754 9999998765663 7788876543 34666665
Q ss_pred HcCCCeEEEecCCCCH------Hhhhhh------------cC---CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh
Q 022377 82 ESGLTSVNISLDTLVP------AKFEFL------------TR---RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD 140 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~------~~~~~i------------r~---~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~ 140 (298)
....+..++++-+.+- +.|+.. +. ..+++.+.+.++.+++.|+ .+++.+ ++..
T Consensus 104 ~~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi-~pE~e~-----fd~g 177 (311)
T 3e02_A 104 AARPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGT-RFEFEC-----YDVG 177 (311)
T ss_dssp HHCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTC-EEEEEE-----CSHH
T ss_pred hcCCCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCC-eEEEEE-----EcHH
Confidence 5567766666333210 111111 01 2358889999999999999 787766 5778
Q ss_pred HHHHHHHHHhhCCC
Q 022377 141 EICDFVELTRDRPI 154 (298)
Q Consensus 141 ~i~~i~~~~~~~g~ 154 (298)
.+..+..++.+ |+
T Consensus 178 ~l~~~~~l~~~-Gl 190 (311)
T 3e02_A 178 HLYNLAHFVDR-KL 190 (311)
T ss_dssp HHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHc-CC
Confidence 88887777665 54
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=1.8 Score=36.42 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch---------HhhHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL---------ARKLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll---------~~~~~~l~~~~ 84 (298)
-|++..+..+++.+..+ +..+.|.+|--.+.|.+.+.++.++++ ++ .+.|-|+++ ++.++..++.|
T Consensus 49 glg~~~~~DlLe~ag~y-ID~lKfg~GTs~l~~~l~ekI~l~~~~-gV---~v~~GGTlfE~~l~qg~~~~yl~~~k~lG 123 (276)
T 1u83_A 49 GYPLQFFKDAIAGASDY-IDFVKFGWGTSLLTKDLEEKISTLKEH-DI---TFFFGGTLFEKYVSQKKVNEFHRYCTYFG 123 (276)
T ss_dssp SCCHHHHHHHHHHHGGG-CCEEEECTTGGGGCTTHHHHHHHHHHT-TC---EEEECHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhhhh-cceEEecCcchhhhHHHHHHHHHHHHc-CC---eEeCCcHHHHHHHHcCcHHHHHHHHHHcC
Confidence 38999999999987766 789999999999999988999999986 65 578899754 34578888899
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-------CCCHhHHHHHHHHHhhCCCeeE
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-------GFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-------~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
++.|-|| ||.-+ -+.+.-.+.|+.+++. + .|...+ -. -....++.+.++...+.|+...
T Consensus 124 F~~IEIS-dGti~---------l~~~~~~~lI~~a~~~-f-~Vl~Ev--G~K~~~~~~~~~~~~~I~~~~~dLeAGA~~V 189 (276)
T 1u83_A 124 CEYIEIS-NGTLP---------MTNKEKAAYIADFSDE-F-LVLSEV--GSKDAELASRQSSEEWLEYIVEDMEAGAEKV 189 (276)
T ss_dssp CSEEEEC-CSSSC---------CCHHHHHHHHHHHTTT-S-EEEEEC--SCCC------CCSTHHHHHHHHHHHHTEEEE
T ss_pred CCEEEEC-CCccc---------CCHHHHHHHHHHHHhh-c-EEeeec--cccCccccCCCCHHHHHHHHHHHHHCCCcEE
Confidence 9999999 55321 2356666777777666 5 332222 11 0122444455554555677554
Q ss_pred EEee
Q 022377 158 FIEF 161 (298)
Q Consensus 158 ~~~~ 161 (298)
.++-
T Consensus 190 iiEa 193 (276)
T 1u83_A 190 ITEA 193 (276)
T ss_dssp EEC-
T ss_pred EEee
Confidence 4433
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.68 Score=39.30 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=91.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc----CCccCcccc-HHHHHHHHhccC-CCCcEEEEeCccch--HhhHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT----GGEPTVRKD-IEEACFHLSKLK-GLKTLAMTTNGLTL--ARKLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t----GGEPll~~~-~~~ii~~~~~~~-~~~~v~i~TNG~ll--~~~~~~l~~ 82 (298)
+.-.+|+||+.+-..+..+.|...|+++ -|.|.+.++ +.++++.+++.. ++- +.++|-|..- +++ ..+.+
T Consensus 23 P~lPvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~i-i~~Ttg~~~~~~e~R-~~~~~ 100 (275)
T 3no5_A 23 PAVPITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMI-TQVSTGGRSGAGNER-GAMLS 100 (275)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCE-EEECCCCCTTCCGGG-GTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeE-EEeCCCCCCCCHHHH-hhHhh
Confidence 3446999999988888888898888886 389999997 559999998753 774 8888876432 233 33334
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
...+..++++-+.+ ..+.+- ..+++.+.+.++.+++.|+ .+++.+ ++...+..+..++.+
T Consensus 101 ~~Pe~aSl~~gs~N--f~~~v~-~N~~~~~~~~~~~~~e~Gi-~pE~e~-----fd~g~l~~~~~l~~~ 160 (275)
T 3no5_A 101 LRPDMASLATGSVN--FPTRVY-DNPPELVDWLAAEMKTYGI-KPEVEA-----FDLSMIFQAAAMQAA 160 (275)
T ss_dssp GCCSEEEEECSCEE--CSSSEE-CCCHHHHHHHHHHHHHTTC-EEEEEE-----SSTHHHHHHHHHHHH
T ss_pred cCCCEEEecCcccc--cccccc-cCCHHHHHHHHHHHHHcCC-eeEEEE-----EcHHHHHHHHHHHHC
Confidence 45676766654322 111111 2468899999999999999 777666 567788777777765
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.31 Score=42.42 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=73.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----CCc-----cCccccHHHHHHHHhccCCCCcEEEEeCccch
Q 022377 3 PEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT----GGE-----PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 3 ~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t----GGE-----Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
|+|.|.. +..++.++..++++.+.+.|+..|-.. ||. |-+.+ .+.++.+++.++.. +.+.+.|...
T Consensus 11 RDG~Qs~--~~~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~--~e~l~~i~~~~~~~-~~~L~r~~~~ 85 (320)
T 3dxi_A 11 RDGGYYT--NWDFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTP--VSVLKHLRNISTKK-IAIMLNEKNT 85 (320)
T ss_dssp HHHGGGG--TTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCC--HHHHHHHHHHCCSE-EEEEEEGGGC
T ss_pred CccccCC--CCcCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccCh--HHHHHHHhhccCCe-EEEEecCCCC
Confidence 4555553 678999999999999999999887776 554 22222 34445554445664 6666544321
Q ss_pred -HhhHHHH---HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEE
Q 022377 74 -ARKLPKL---KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 132 (298)
Q Consensus 74 -~~~~~~l---~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~v 132 (298)
.+.++.+ ..+|++.+.|..+- ...+.+.+.++.+++.|+ .+.....
T Consensus 86 ~~~dv~~~~~a~~~Gvd~~ri~~~~------------~nle~~~~~v~~ak~~G~-~v~~~~~ 135 (320)
T 3dxi_A 86 TPEDLNHLLLPIIGLVDMIRIAIDP------------QNIDRAIVLAKAIKTMGF-EVGFNVM 135 (320)
T ss_dssp CGGGHHHHHGGGTTTCSEEEEEECG------------GGHHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred ChhhHHHHHHhhhcCCCEEEEEecH------------HHHHHHHHHHHHHHHCCC-EEEEEEE
Confidence 2233333 23689988888422 137889999999999999 7765553
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.79 E-value=6.3 Score=33.50 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRL 37 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~ 37 (298)
-+++++.++++.+.+.|+..|.+
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l 174 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSL 174 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEe
Confidence 34455555555555555554444
|
| >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=4.2 Score=39.19 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcC-------------C------ccCccccHHHHHHHHhccCCCCcEE--EEeCccc
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTG-------------G------EPTVRKDIEEACFHLSKLKGLKTLA--MTTNGLT 72 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tG-------------G------EPll~~~~~~ii~~~~~~~~~~~v~--i~TNG~l 72 (298)
-++.+..++.|+.+.+.|...|.+-| | .|.-..|+.++++|+++ +|+. +. ..|+|..
T Consensus 367 g~nte~~K~YIDFAA~~G~eyvLveGwD~GW~~~~~~~~~~~fd~~~p~pd~Dl~eL~~YA~s-KGV~-iilw~~t~~~~ 444 (738)
T 2d73_A 367 SANTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAAR-KGIK-MMMHHETSASV 444 (738)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHH-TTCE-EEEEEECTTBH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccCccccccccccccCCCCCHHHHHHHHHh-CCCE-EEEEEcCCCch
Confidence 38999999999999999999999811 1 23333458999999999 5875 55 4566621
Q ss_pred ------hHhhHHHHHHcCCCeEEEecCC---CCHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 022377 73 ------LARKLPKLKESGLTSVNISLDT---LVPAKFEFLTRRKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 73 ------l~~~~~~l~~~~~~~v~iSldg---~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 124 (298)
+++.+..+.+.|+..|-+..=| ...+.|+... .-+-..+.++.+.++++
T Consensus 445 ~n~e~~~d~~f~~~~~~Gv~GVKvdF~g~~~~r~~~h~~Q~---~v~~Y~~i~~~AA~~~L 502 (738)
T 2d73_A 445 RNYERHMDKAYQFMADNGYNSVKSGYVGNIIPRGEHHYGQW---MNNHYLYAVKKAADYKI 502 (738)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCSSCBSTTCCTTSHH---HHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEeCccccCcCCcccccchH---HHHHHHHHHHHHHHcCc
Confidence 3456788899999998888775 2222221111 13444556666667665
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=89.15 E-value=14 Score=35.73 Aligned_cols=157 Identities=12% Similarity=0.113 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEcCCc------cCccccHHHHHHHHhc-cCCCCcEEEEeCcc---c--------
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIRLTGGE------PTVRKDIEEACFHLSK-LKGLKTLAMTTNGL---T-------- 72 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~~tGGE------Pll~~~~~~ii~~~~~-~~~~~~v~i~TNG~---l-------- 72 (298)
..|+.++..++++.+.+. |+..|-..||- |++..+=.+.++.+++ .++.. +.+...|. -
T Consensus 120 ~r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~-l~~l~R~~n~vgy~~~p~~~ 198 (718)
T 3bg3_A 120 TRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIP-FQMLLRGANAVGYTNYPDNV 198 (718)
T ss_dssp TCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSC-EEEEECGGGTTSSSCCCHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccch-HHHHhcccccccccccCCcc
Confidence 358999999999999998 46678887664 4776553444444433 23443 66666442 1
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-----c---CCCHhHHHH
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-----R---GFNDDEICD 144 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-----~---~~n~~~i~~ 144 (298)
..+.++...++|++.|.|.. +.+ ..+.+...++.+++.|. .+.....++ + ..+.+.+.+
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~-s~n-----------~l~~l~~~i~~ak~~G~-~v~~~i~~~~d~~dp~r~~~~~e~~~~ 265 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFD-SLN-----------YLPNMLLGMEAAGSAGG-VVEAAISYTGDVADPSRTKYSLQYYMG 265 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEEC-SSC-----------CHHHHHHHHHHHHTTTS-EEEEEEECCSCTTCTTCCTTCHHHHHH
T ss_pred hHHHHHHHHhcCcCEEEEEe-cHH-----------HHHHHHHHHHHHHHcCC-eEEEEEEeeccccCCCCCCCCHHHHHH
Confidence 24567888899999988874 322 25677788888999987 776555444 1 136677888
Q ss_pred HHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 145 FVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 145 i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+++.+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 266 ~a~~l~~~Ga~--~I~l~DT~G~~----~P~~v~~lV~~lk~~~p 304 (718)
T 3bg3_A 266 LAEELVRAGTH--ILCIKDMAGLL----KPTACTMLVSSLRDRFP 304 (718)
T ss_dssp HHHHHHHHTCS--EEEEECTTSCC----CHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC--EEEEcCcCCCc----CHHHHHHHHHHHHHhCC
Confidence 88888888885 33333332211 11234566777777664
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=88.85 E-value=2.9 Score=39.69 Aligned_cols=144 Identities=10% Similarity=0.036 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc----CCCCcEEEEeCcc--chHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL----KGLKTLAMTTNGL--TLAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~----~~~~~v~i~TNG~--ll~~ 75 (298)
+|+|.|.. ...|+.++-.++++.|.++|+..|-..- |-..+.-.+.++.+.+. .+.. +...+-.. .++.
T Consensus 79 LRDGeQ~~--g~~~s~eeKl~Ia~~L~~lGVd~IEaGf--P~asp~D~e~v~~i~~~~l~~~~~~-i~aL~r~~~~did~ 153 (644)
T 3hq1_A 79 LRDGNQAL--IDPMSPARKRRMFDLLVRMGYKEIEVGF--PSASQTDFDFVREIIEQGAIPDDVT-IQVLTQCRPELIER 153 (644)
T ss_dssp CCCCGGGC--SSCCCHHHHHHHHHHHHHHTCSEEEEEC--TTTCHHHHHHHHHHHHTTCSCTTCE-EEEEEESCHHHHHH
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCChhHHHHHHHHHhcCCCCCCeE-EEEEecCCHhhHHH
Confidence 35554443 5679999999999999999998876533 88877655666666553 1332 44333221 1244
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc----HHHHHHHHHHHHHcCCC--CEEEEEEEec----CCCHhHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYN--PVKVNCVVMR----GFNDDEICDF 145 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~--~v~i~~vi~~----~~n~~~i~~i 145 (298)
.++.++.++.+.|.+.+-.. +.|....-+.+ ++.+.+.++.+++++.. .+.+.+.+.. ..+.+.+.++
T Consensus 154 a~eal~~a~~~~Vhif~stS--d~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev 231 (644)
T 3hq1_A 154 TFQACSGAPRAIVHFYNSTS--ILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQV 231 (644)
T ss_dssp HHHHHTTCSEEEEEEEEECC--HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHH
Confidence 56667777888888887763 33433322233 55555666666654321 2233333332 1466777788
Q ss_pred HHHHhhC
Q 022377 146 VELTRDR 152 (298)
Q Consensus 146 ~~~~~~~ 152 (298)
++.+.+.
T Consensus 232 ~~aa~ea 238 (644)
T 3hq1_A 232 CDAVGEV 238 (644)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877764
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.39 E-value=11 Score=32.13 Aligned_cols=122 Identities=12% Similarity=0.039 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc---CCccCcccc-HHHHHHHHhccC-CCCcEEEEe-Cccch-HhhHHHHHHcCCC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT---GGEPTVRKD-IEEACFHLSKLK-GLKTLAMTT-NGLTL-ARKLPKLKESGLT 86 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t---GGEPll~~~-~~~ii~~~~~~~-~~~~v~i~T-NG~ll-~~~~~~l~~~~~~ 86 (298)
.-+++.+.++++.+.+.|+..|.+. |. +.|. ..++++.+++.. ++. +.+.+ |.+-+ ......-.++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~~~~lv~~l~~~~~~~~-l~~H~Hn~~Gla~An~laAv~aGa~ 230 (302)
T 2ftp_A 155 DVDPRQVAWVARELQQMGCYEVSLGDTIGV---GTAGATRRLIEAVASEVPRER-LAGHFHDTYGQALANIYASLLEGIA 230 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEESSSC---CCHHHHHHHHHHHTTTSCGGG-EEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---cCHHHHHHHHHHHHHhCCCCe-EEEEeCCCccHHHHHHHHHHHhCCC
Confidence 4677778888887778887777774 43 4454 447777776643 353 66664 22222 2333344456888
Q ss_pred eEEEecCCCCHHhhhhh-cCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 87 SVNISLDTLVPAKFEFL-TRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~i-r~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
.|..|+.|..+=-|..= .|....+.++..++. .|+ .. +.+.+.+.++.+++.+
T Consensus 231 ~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~---~g~-~~--------~idl~~l~~~~~~~~~ 284 (302)
T 2ftp_A 231 VFDSSVAGLGGCPYAKGATGNVASEDVLYLLNG---LEI-HT--------GVDMHALVDAGQRICA 284 (302)
T ss_dssp EEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHH---TTC-BC--------CCCHHHHHHHHHHHHH
T ss_pred EEEecccccCCCCCCCCCCCChhHHHHHHHHHh---cCC-CC--------CcCHHHHHHHHHHHHH
Confidence 88888887754223222 233346666655553 455 32 3567777777776654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.32 E-value=8.8 Score=32.69 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 21 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~ 99 (297)
T 3flu_A 21 QDGSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVP-VIAGTGANNTVEAIALSQAAE 99 (297)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCcCHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 777665 33555554431 2343 555555544543 456677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
+.|.+.+.+.--.+ + ..+-+.+.+-.+.+.++ ++ ++.+.-
T Consensus 100 ~~Gadavlv~~P~y----~-----~~~~~~l~~~f~~va~a~~l-PiilYn 140 (297)
T 3flu_A 100 KAGADYTLSVVPYY----N-----KPSQEGIYQHFKTIAEATSI-PMIIYN 140 (297)
T ss_dssp HTTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHHHCCS-CEEEEE
T ss_pred HcCCCEEEECCCCC----C-----CCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 78999887764332 1 13456777777777764 66 665543
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=88.06 E-value=8.6 Score=33.12 Aligned_cols=110 Identities=11% Similarity=0.166 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 36 ~dg~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~st~~ai~la~~A~ 114 (315)
T 3si9_A 36 DNGAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVP-VVAGAGSNSTSEAVELAKHAE 114 (315)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999887 99 777654 33555544431 2343 555555444543 456677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
+.|.+.+.+---.+ + ..+-+.+.+-.+.+.++ ++ ++.+.-
T Consensus 115 ~~Gadavlv~~P~y----~-----~~~~~~l~~~f~~va~a~~l-PiilYn 155 (315)
T 3si9_A 115 KAGADAVLVVTPYY----N-----RPNQRGLYTHFSSIAKAISI-PIIIYN 155 (315)
T ss_dssp HTTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHHHCSS-CEEEEE
T ss_pred hcCCCEEEECCCCC----C-----CCCHHHHHHHHHHHHHcCCC-CEEEEe
Confidence 78999877764322 1 13456777777777664 66 665543
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.46 E-value=8.6 Score=33.09 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 38 ~dg~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~~t~~ai~la~~A~ 116 (315)
T 3na8_A 38 ADGGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVP-TIVSVSDLTTAKTVRRAQFAE 116 (315)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 888764 33555554431 2343 555555444543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+---.+ + ..+-+.+.+-++.+.++ ++ ++.+.
T Consensus 117 ~~Gadavlv~~P~y----~-----~~s~~~l~~~f~~va~a~~l-PiilY 156 (315)
T 3na8_A 117 SLGAEAVMVLPISY----W-----KLNEAEVFQHYRAVGEAIGV-PVMLY 156 (315)
T ss_dssp HTTCSEEEECCCCS----S-----CCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred hcCCCEEEECCCCC----C-----CCCHHHHHHHHHHHHHhCCC-cEEEE
Confidence 78999877754332 1 13457777878777764 66 66544
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.99 E-value=7.2 Score=33.87 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..|.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 48 ~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvp-ViaGvg~~st~eai~la~~A~ 126 (332)
T 2r8w_A 48 EAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRT-LMAGIGALRTDEAVALAKDAE 126 (332)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 677664 33555554432 2343 554555544543 456666
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.--.+ . ..+-+.+.+-.+.+.++ ++ ++.+
T Consensus 127 ~~Gadavlv~~P~Y-----~----~~s~~~l~~~f~~VA~a~~l-Piil 165 (332)
T 2r8w_A 127 AAGADALLLAPVSY-----T----PLTQEEAYHHFAAVAGATAL-PLAI 165 (332)
T ss_dssp HHTCSEEEECCCCS-----S----CCCHHHHHHHHHHHHHHCSS-CEEE
T ss_pred hcCCCEEEECCCCC-----C----CCCHHHHHHHHHHHHHhcCC-CEEE
Confidence 77999887764332 1 13457777777777664 66 6654
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.97 E-value=13 Score=31.50 Aligned_cols=110 Identities=11% Similarity=0.143 Sum_probs=74.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+...| || |.|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 17 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~A~ 95 (294)
T 3b4u_A 17 TDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSR-IVTGVLVDSIEDAADQSAEAL 95 (294)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGG-EEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 888765 44666665542 1343 555555544543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc----CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV----GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~----g~~~v~i~ 130 (298)
+.|.+.+.+.--.+ + + ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 96 ~~Gadavlv~~P~y----~-~---~~s~~~l~~~f~~va~a~p~~~l-PiilY 139 (294)
T 3b4u_A 96 NAGARNILLAPPSY----F-K---NVSDDGLFAWFSAVFSKIGKDAR-DILVY 139 (294)
T ss_dssp HTTCSEEEECCCCS----S-C---SCCHHHHHHHHHHHHHHHCTTCC-CEEEE
T ss_pred hcCCCEEEEcCCcC----C-C---CCCHHHHHHHHHHHHHhcCCCCC-cEEEE
Confidence 78999887764332 1 1 13567777777777764 67 76553
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=8 Score=32.88 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHh---hHHHHHHc
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLAR---KLPKLKES 83 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~---~~~~l~~~ 83 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+..+ . +-.-+.+..+.+ ..+...+.
T Consensus 13 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~-g-viaGvg~~~t~~ai~la~~A~~~ 90 (293)
T 1w3i_A 13 KDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTN-K-IIFQVGGLNLDDAIRLAKLSKDF 90 (293)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCS-C-EEEECCCSCHHHHHHHHHHGGGS
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcC-C-EEEecCCCCHHHHHHHHHHHHhc
Confidence 45789999999999999999999999987 99 888765 5588887776322 1 333344434444 34555567
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
|.+.+.+.--.+. + ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 91 Gadavlv~~P~y~-----~---~~s~~~l~~~f~~va~a~~l-PiilY 129 (293)
T 1w3i_A 91 DIVGIASYAPYYY-----P---RMSEKHLVKYFKTLCEVSPH-PVYLY 129 (293)
T ss_dssp CCSEEEEECCCSC-----S---SCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred CCCEEEEcCCCCC-----C---CCCHHHHHHHHHHHHhhCCC-CEEEE
Confidence 9998877743321 1 03556777777777664 66 66543
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=86.68 E-value=14 Score=31.52 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 30 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~st~~ai~la~~A~ 108 (304)
T 3cpr_A 30 ESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAK-LIAGVGTNNTRTSVELAEAAA 108 (304)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 677664 33555554432 2343 555555544544 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.+ . ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 109 ~~Gadavlv~~P~y-----~----~~~~~~l~~~f~~ia~a~~l-PiilY 148 (304)
T 3cpr_A 109 SAGADGLLVVTPYY-----S----KPSQEGLLAHFGAIAAATEV-PICLY 148 (304)
T ss_dssp HTTCSEEEEECCCS-----S----CCCHHHHHHHHHHHHHHCCS-CEEEE
T ss_pred hcCCCEEEECCCCC-----C----CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 78999887774332 1 13457777777777664 66 66553
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=15 Score=31.92 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..|.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 45 ~dg~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvp-ViaGvg~~st~eai~la~~A~ 123 (343)
T 2v9d_A 45 ADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVP-VLIGTGGTNARETIELSQHAQ 123 (343)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999877 99 888765 33555554432 2453 655555555544 345566
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+
T Consensus 124 ~~Gadavlv~~P~Y~---------~~s~~~l~~~f~~VA~a~~l-Piil 162 (343)
T 2v9d_A 124 QAGADGIVVINPYYW---------KVSEANLIRYFEQVADSVTL-PVML 162 (343)
T ss_dssp HHTCSEEEEECCSSS---------CCCHHHHHHHHHHHHHTCSS-CEEE
T ss_pred hcCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhcCC-CEEE
Confidence 779998887744321 12456667777666664 55 5544
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=85.96 E-value=4.8 Score=34.59 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=81.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 22 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~A~ 100 (309)
T 3fkr_A 22 DTGDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVP-VIVTTSHYSTQVCAARSLRAQ 100 (309)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCc-EEEecCCchHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 777765 33555554432 2453 555555544543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+.|.+.+.+-- | .|... ...+-+.+.+-.+.+.+ .++ ++.+.-+-..|.+.. .+.+.+++.+
T Consensus 101 ~~Gadavlv~~----P-yy~~~-~~~s~~~l~~~f~~va~a~~l-PiilYn~P~tg~~l~-~~~~~~La~~ 163 (309)
T 3fkr_A 101 QLGAAMVMAMP----P-YHGAT-FRVPEAQIFEFYARVSDAIAI-PIMVQDAPASGTALS-APFLARMARE 163 (309)
T ss_dssp HTTCSEEEECC----S-CBTTT-BCCCHHHHHHHHHHHHHHCSS-CEEEEECGGGCCCCC-HHHHHHHHHH
T ss_pred HcCCCEEEEcC----C-CCccC-CCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCCC-HHHHHHHHhh
Confidence 78999777653 2 22110 12356777777777776 467 665533211244433 3445555544
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=85.83 E-value=16 Score=31.34 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=73.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+...| || |+|..+ -.++++.+.+. ..+. +-.-+.+ .+.+ ..+...
T Consensus 26 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvp-ViaGvg~-st~~ai~la~~A~ 103 (314)
T 3d0c_A 26 GTREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRAT-VVAGIGY-SVDTAIELGKSAI 103 (314)
T ss_dssp TTCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEEECS-SHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCe-EEecCCc-CHHHHHHHHHHHH
Confidence 45789999999999999999999999877 99 677664 33555554432 2453 6566666 6654 345566
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.-
T Consensus 104 ~~Gadavlv~~P~y~---------~~s~~~l~~~f~~va~a~~l-PiilYn 144 (314)
T 3d0c_A 104 DSGADCVMIHQPVHP---------YITDAGAVEYYRNIIEALDA-PSIIYF 144 (314)
T ss_dssp HTTCSEEEECCCCCS---------CCCHHHHHHHHHHHHHHSSS-CEEEEE
T ss_pred HcCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhCCC-CEEEEe
Confidence 789998777643321 13456677777777664 66 665543
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=85.81 E-value=5.2 Score=34.30 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |.|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 29 ~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~ 107 (304)
T 3l21_A 29 GDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRAR-VIAGAGTYDTAHSIRLAKACA 107 (304)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 787765 33555554442 2343 555554444543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.+ + ..+-+.+.+-++.+.++ ++ ++.+.
T Consensus 108 ~~Gadavlv~~P~y----~-----~~s~~~l~~~f~~va~a~~l-PiilY 147 (304)
T 3l21_A 108 AEGAHGLLVVTPYY----S-----KPPQRGLQAHFTAVADATEL-PMLLY 147 (304)
T ss_dssp HHTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHTSCSS-CEEEE
T ss_pred HcCCCEEEECCCCC----C-----CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 78999877764332 1 13567788888887774 66 66544
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=85.71 E-value=16 Score=31.18 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 25 ~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvp-ViaGvg~~~t~~ai~la~~A~ 103 (303)
T 2wkj_A 25 QQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIK-LIAHVGCVSTAESQQLAASAK 103 (303)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 677664 33555554432 2343 555455544543 455666
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-C-CCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-G-YNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g-~~~v~i~ 130 (298)
+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ . + ++.+.
T Consensus 104 ~~Gadavlv~~P~y~---------~~s~~~l~~~f~~va~a~~~l-PiilY 144 (303)
T 2wkj_A 104 RYGFDAVSAVTPFYY---------PFSFEEHCDHYRAIIDSADGL-PMVVY 144 (303)
T ss_dssp HHTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred hCCCCEEEecCCCCC---------CCCHHHHHHHHHHHHHhCCCC-CEEEE
Confidence 779998877743321 12456777777777664 5 7 66553
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=85.61 E-value=7.5 Score=33.16 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=72.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+...| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 14 ~dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~A~ 92 (297)
T 2rfg_A 14 INGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVP-VIAGAGSNNPVEAVRYAQHAQ 92 (297)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEccCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 677664 33555544431 2343 545555544543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.+ + ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 93 ~~Gadavlv~~P~y----~-----~~s~~~l~~~f~~va~a~~l-PiilY 132 (297)
T 2rfg_A 93 QAGADAVLCVAGYY----N-----RPSQEGLYQHFKMVHDAIDI-PIIVY 132 (297)
T ss_dssp HHTCSEEEECCCTT----T-----CCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred hcCCCEEEEcCCCC----C-----CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 78999887764322 1 13557777777777664 66 66543
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=85.56 E-value=16 Score=30.98 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+...| || |.|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 15 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~a~ 93 (291)
T 3tak_A 15 KDGGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIP-IIAGTGANSTREAIELTKAAK 93 (291)
T ss_dssp TTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999877 99 777665 33555554432 2343 555555544543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.+ + ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 94 ~~Gadavlv~~P~y----~-----~~~~~~l~~~f~~ia~a~~l-PiilY 133 (291)
T 3tak_A 94 DLGADAALLVTPYY----N-----KPTQEGLYQHYKAIAEAVEL-PLILY 133 (291)
T ss_dssp HHTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHHHCCS-CEEEE
T ss_pred hcCCCEEEEcCCCC----C-----CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 78999887764332 1 13456777777777764 66 66554
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=85.45 E-value=2.7 Score=35.78 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHh---hHHHHHHc
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLAR---KLPKLKES 83 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~---~~~~l~~~ 83 (298)
.+..++.+.+.++++.+.+.|+..+...| || |+|..+ -.++++.+.+..+ . +-.-+.+..+.+ ..+...+.
T Consensus 13 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-g-ViaGvg~~~t~~ai~la~~A~~~ 90 (288)
T 2nuw_A 13 KQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTH-K-LIFQVGSLNLNDVMELVKFSNEM 90 (288)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCS-C-EEEECCCSCHHHHHHHHHHHHTS
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-C-eEEeeCCCCHHHHHHHHHHHHhc
Confidence 45789999999999999999999999987 99 888765 5588888776322 1 333343333433 45666677
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
|.+.+.+.--.+ + + ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 91 Gadavlv~~P~y----~-~---~~s~~~l~~~f~~va~a~~l-PiilY 129 (288)
T 2nuw_A 91 DILGVSSHSPYY----F-P---RLPEKFLAKYYEEIARISSH-SLYIY 129 (288)
T ss_dssp CCSEEEECCCCS----S-C---SCCHHHHHHHHHHHHHHCCS-CEEEE
T ss_pred CCCEEEEcCCcC----C-C---CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 999877764332 1 1 03557777777777664 66 66543
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=85.32 E-value=8.6 Score=32.66 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~~~~ 84 (298)
.++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...+.|
T Consensus 19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~~~G 97 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVP-VIAGTGTNDTEKSIQASIQAKALG 97 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCc-EEEeCCcccHHHHHHHHHHHHHcC
Confidence 89999999999999999999999987 99 777664 33555544332 2443 555554444543 456667789
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 98 adavlv~~P~y~---------~~~~~~l~~~f~~ia~a~~l-PiilY 134 (292)
T 3daq_A 98 ADAIMLITPYYN---------KTNQRGLVKHFEAIADAVKL-PVVLY 134 (292)
T ss_dssp CSEEEEECCCSS---------CCCHHHHHHHHHHHHHHHCS-CEEEE
T ss_pred CCEEEECCCCCC---------CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 998877643321 12456677777777663 77 66554
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=85.22 E-value=16 Score=30.85 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...+
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~a~~ 93 (289)
T 2yxg_A 15 NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQ-VIAGAGSNCTEEAIELSVFAED 93 (289)
T ss_dssp TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHHh
Confidence 5679999999999999999999999987 99 777664 33555554432 2343 555555544543 4566667
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 94 ~Gadavlv~~P~y~---------~~s~~~l~~~f~~ia~a~~l-PiilY 132 (289)
T 2yxg_A 94 VGADAVLSITPYYN---------KPTQEGLRKHFGKVAESINL-PIVLY 132 (289)
T ss_dssp HTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred cCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 89998877743321 13557777777777664 66 66543
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=17 Score=30.99 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=73.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 26 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvp-ViaGvg~~~t~~ai~la~~A~ 104 (301)
T 1xky_A 26 INGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVP-VIAGTGSNNTHASIDLTKKAT 104 (301)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCce-EEeCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 677664 33555544431 2453 555555545544 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+
T Consensus 105 ~~Gadavlv~~P~y~---------~~s~~~l~~~f~~va~a~~l-Piil 143 (301)
T 1xky_A 105 EVGVDAVMLVAPYYN---------KPSQEGMYQHFKAIAESTPL-PVML 143 (301)
T ss_dssp HTTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHTCSS-CEEE
T ss_pred hcCCCEEEEcCCCCC---------CCCHHHHHHHHHHHHHhcCC-CEEE
Confidence 789998877744321 13557777888777774 56 6654
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=85.07 E-value=17 Score=31.01 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...+
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvp-ViaGvg~~st~~ai~la~~A~~ 105 (306)
T 1o5k_A 27 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIP-VIVGAGTNSTEKTLKLVKQAEK 105 (306)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEcCCCccHHHHHHHHHHHHh
Confidence 5679999999999999999999999987 99 677664 33555544431 2353 555555545544 3455667
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 106 ~Gadavlv~~P~y~---------~~s~~~l~~~f~~va~a~~l-PiilY 144 (306)
T 1o5k_A 106 LGANGVLVVTPYYN---------KPTQEGLYQHYKYISERTDL-GIVVY 144 (306)
T ss_dssp HTCSEEEEECCCSS---------CCCHHHHHHHHHHHHTTCSS-CEEEE
T ss_pred cCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 79998877743321 13457777777777764 56 66543
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=84.93 E-value=4.6 Score=34.91 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=72.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 25 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a~ 103 (318)
T 3qfe_A 25 KTDTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFP-IMAGVGAHSTRQVLEHINDAS 103 (318)
T ss_dssp TTTEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSC-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999987 99 777665 33555554432 2453 555555544543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
+.|.+.+.+---. .|.+ ..+-+.+.+-.+.+.++ ++ ++.+.-
T Consensus 104 ~~Gadavlv~~P~----y~~k---p~~~~~l~~~f~~ia~a~~l-PiilYn 146 (318)
T 3qfe_A 104 VAGANYVLVLPPA----YFGK---ATTPPVIKSFFDDVSCQSPL-PVVIYN 146 (318)
T ss_dssp HHTCSEEEECCCC----C------CCCHHHHHHHHHHHHHHCSS-CEEEEE
T ss_pred HcCCCEEEEeCCc----ccCC---CCCHHHHHHHHHHHHhhCCC-CEEEEe
Confidence 7899977775332 2211 12456777777777664 66 665544
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=17 Score=30.77 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVT-SGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l 80 (298)
.+..++.+.+.++++.+.+ .|+..+...| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+..
T Consensus 17 ~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~a 95 (293)
T 1f6k_A 17 EDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIA-LIAQVGSVNLKEAVELGKYA 95 (293)
T ss_dssp TTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEECCCSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCe-EEEecCCCCHHHHHHHHHHH
Confidence 4578999999999999999 9999999987 99 888765 33555554432 2343 555555545544 34556
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
.+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 96 ~~~Gadavlv~~P~y~---------~~~~~~l~~~f~~va~a~~l-PiilY 136 (293)
T 1f6k_A 96 TELGYDCLSAVTPFYY---------KFSFPEIKHYYDTIIAETGS-NMIVY 136 (293)
T ss_dssp HHHTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred HhcCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 6779998877743321 13456777777776664 66 66553
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=84.74 E-value=18 Score=31.01 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+...| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 37 ~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvp-ViaGvg~~st~eai~la~~A~ 115 (314)
T 3qze_A 37 AQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIP-VIAGTGANSTREAVALTEAAK 115 (314)
T ss_dssp TTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCCcCHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 888765 33555544332 2343 555555544544 456677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
+.|.+.+.+---.+ + ..+-+.+.+-.+.+.++ ++ ++.+.-
T Consensus 116 ~~Gadavlv~~P~y----~-----~~s~~~l~~~f~~va~a~~l-PiilYn 156 (314)
T 3qze_A 116 SGGADACLLVTPYY----N-----KPTQEGMYQHFRHIAEAVAI-PQILYN 156 (314)
T ss_dssp HTTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHHHSCS-CEEEEE
T ss_pred HcCCCEEEEcCCCC----C-----CCCHHHHHHHHHHHHHhcCC-CEEEEe
Confidence 78999877764322 1 13456777777777764 67 665543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=18 Score=30.85 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--C-CCCcEEEEeCccchHh---hHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--K-GLKTLAMTTNGLTLAR---KLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~-~~~~v~i~TNG~ll~~---~~~~l 80 (298)
.+..++.+.+.++++.+.+.|+..+...| || |+|..+ -.++++.+.+. . .+. +-.-+.+..+.+ ..+..
T Consensus 21 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvp-viaGvg~~~t~~ai~la~~a 99 (301)
T 3m5v_A 21 KNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVK-VLAGAGSNATHEAVGLAKFA 99 (301)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCE-EEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCe-EEEeCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 888765 34555555442 2 343 555555545544 45666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
.+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 100 ~~~Gadavlv~~P~y~---------~~s~~~l~~~f~~va~a~~l-PiilY 140 (301)
T 3m5v_A 100 KEHGADGILSVAPYYN---------KPTQQGLYEHYKAIAQSVDI-PVLLY 140 (301)
T ss_dssp HHTTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred HHcCCCEEEEcCCCCC---------CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 7789998877643321 13457777777777764 66 66554
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.45 E-value=18 Score=30.68 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...+
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp-viaGvg~~~t~~ai~la~~A~~ 93 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIK-VIAGTGGNATHEAVHLTAHAKE 93 (294)
T ss_dssp TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSE-EEEECCCSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHHHh
Confidence 5679999999999999999999999987 99 677664 33555554432 2343 555555545544 3456667
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 94 ~Gadavlv~~P~y~---------~~s~~~l~~~f~~va~a~~l-PiilY 132 (294)
T 2ehh_A 94 VGADGALVVVPYYN---------KPTQRGLYEHFKTVAQEVDI-PIIIY 132 (294)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHCCS-CEEEE
T ss_pred cCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 89998877743321 13556777777777664 66 66543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.34 E-value=3.1 Score=35.64 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCC-cEEEEeCccch-HhhHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLK-TLAMTTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~-~v~i~TNG~ll-~~~~~~l~~ 82 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. -+++.+|.+.- -+..+...+
T Consensus 18 ~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 97 (300)
T 3eb2_A 18 AEGRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEK 97 (300)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999998877 99 777765 33555544331 2332 23444444322 234567777
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
.|.+.+.+---.+. ..+-+.+.+-++.+.++ ++ ++.+.-
T Consensus 98 ~Gadavlv~~P~y~---------~~~~~~l~~~f~~va~a~~l-PiilYn 137 (300)
T 3eb2_A 98 LGADGILAILEAYF---------PLKDAQIESYFRAIADAVEI-PVVIYT 137 (300)
T ss_dssp HTCSEEEEEECCSS---------CCCHHHHHHHHHHHHHHCSS-CEEEEE
T ss_pred cCCCEEEEcCCCCC---------CCCHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 89998777643321 13456777777777663 66 665443
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=84.28 E-value=18 Score=30.61 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHhhH---HHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLARKL---PKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~~~---~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+.+ +...
T Consensus 15 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~a~ 93 (292)
T 2ojp_A 15 EKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIP-VIAGTGANATAEAISLTQRFN 93 (292)
T ss_dssp TTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 777664 33555554431 2353 65555554555544 4445
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+
T Consensus 94 ~~Gadavlv~~P~y~---------~~s~~~l~~~f~~ia~a~~l-Piil 132 (292)
T 2ojp_A 94 DSGIVGCLTVTPYYN---------RPSQEGLYQHFKAIAEHTDL-PQIL 132 (292)
T ss_dssp TSSCSEEEEECCCSS---------CCCHHHHHHHHHHHHTTCSS-CEEE
T ss_pred hcCCCEEEECCCCCC---------CCCHHHHHHHHHHHHHhcCC-CEEE
Confidence 568898777643321 13567777777777764 56 6544
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.15 E-value=9.5 Score=32.39 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=72.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 14 ~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~A~ 92 (292)
T 2vc6_A 14 ADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVP-VIAGAGSNSTAEAIAFVRHAQ 92 (292)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-BEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEecCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999887 99 677664 33555554431 2343 555555544443 455667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 93 ~~Gadavlv~~P~y~---------~~s~~~l~~~f~~ia~a~~l-PiilY 132 (292)
T 2vc6_A 93 NAGADGVLIVSPYYN---------KPTQEGIYQHFKAIDAASTI-PIIVY 132 (292)
T ss_dssp HTTCSEEEEECCCSS---------CCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred HcCCCEEEEcCCCCC---------CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 789998877644321 13456777777777664 66 66543
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=84.01 E-value=17 Score=30.24 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=81.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch----H----hhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL----A----RKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll----~----~~~~~l~~~ 83 (298)
+...+.+++.++++++.++++..|++ +|.+...+....+..++. +..+. |+-+ . ...+...+.
T Consensus 53 ~p~~t~~~I~~lc~eA~~~~~aaVCV-------~p~~V~~a~~~L~gs~v~-v~tVi-gFP~G~~~~~~Kv~Ea~~Ai~~ 123 (260)
T 3r12_A 53 KPFATPDDIKKLCLEARENRFHGVCV-------NPCYVKLAREELEGTDVK-VVTVV-GFPLGANETRTKAHEAIFAVES 123 (260)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCSEEEE-------CGGGHHHHHHHHTTSCCE-EEEEE-STTTCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEE-------CHHHHHHHHHHhcCCCCe-EEEEe-cCCCCCCcHHHHHHHHHHHHHc
Confidence 34678999999999999999888886 566554444333323553 54433 2222 1 134556667
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecC-CCHhHHHHHHHHHhhCCCee
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRG-FNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~-~n~~~i~~i~~~~~~~g~~~ 156 (298)
|.+.|.+-++-. . +. .+.|+.+.+-|+.+++. +. .+ .+.+-.+ .+.+++....+.+.+.|.++
T Consensus 124 GAdEIDmViNig-~-----lk-~g~~~~v~~eI~~v~~a~~~~-~l--KVIlEt~~Lt~eei~~A~~ia~eaGADf 189 (260)
T 3r12_A 124 GADEIDMVINVG-M-----LK-AKEWEYVYEDIRSVVESVKGK-VV--KVIIETCYLDTEEKIAACVISKLAGAHF 189 (260)
T ss_dssp TCSEEEEECCHH-H-----HH-TTCHHHHHHHHHHHHHHTTTS-EE--EEECCGGGCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCEEEEEeehh-h-----hc-cccHHHHHHHHHHHHHhcCCC-cE--EEEEeCCCCCHHHHHHHHHHHHHhCcCE
Confidence 999888887642 1 11 24688888888888876 33 33 3332222 46788999999999999874
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=83.85 E-value=18 Score=30.19 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc--CCccCccccHH------------------HHHHHHhcc-CCCCcEEEEe--Cc
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKDIE------------------EACFHLSKL-KGLKTLAMTT--NG 70 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~~~------------------~ii~~~~~~-~~~~~v~i~T--NG 70 (298)
..+.+++.++++.+.+.|+..|.+. -.+|++...++ ++++.+++. .++. +.+.+ |.
T Consensus 27 dp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~P-v~lm~y~n~ 105 (268)
T 1qop_A 27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIP-IGLLMYANL 105 (268)
T ss_dssp SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSC-EEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-EEEEEcccH
Confidence 4667899999999999998877773 25676554433 567777775 4665 65543 54
Q ss_pred cc---hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHH
Q 022377 71 LT---LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 147 (298)
Q Consensus 71 ~l---l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~ 147 (298)
.. ..+.++.+.++|.+.+.+. |-+. +.+.+.++.++++|+ .+ -.++.+....+.+.++.+
T Consensus 106 v~~~g~~~~~~~~~~aGadgii~~-d~~~-------------e~~~~~~~~~~~~g~-~~--i~l~~p~t~~~~i~~i~~ 168 (268)
T 1qop_A 106 VFNNGIDAFYARCEQVGVDSVLVA-DVPV-------------EESAPFRQAALRHNI-AP--IFICPPNADDDLLRQVAS 168 (268)
T ss_dssp HHTTCHHHHHHHHHHHTCCEEEET-TCCG-------------GGCHHHHHHHHHTTC-EE--ECEECTTCCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHcCCCEEEEc-CCCH-------------HHHHHHHHHHHHcCC-cE--EEEECCCCCHHHHHHHHh
Confidence 22 2568899999999987775 4331 334456677788887 44 234555444566677766
Q ss_pred HHh
Q 022377 148 LTR 150 (298)
Q Consensus 148 ~~~ 150 (298)
...
T Consensus 169 ~~~ 171 (268)
T 1qop_A 169 YGR 171 (268)
T ss_dssp HCC
T ss_pred hCC
Confidence 543
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=83.79 E-value=17 Score=29.92 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=83.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccch-H---hhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLTL-A---RKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~ll-~---~~~~~l~~~~ 84 (298)
+...+.+++.++++++.++++..|++ +|.+...+....+..++. +..+++ |... . ...+...+.|
T Consensus 37 ~p~~t~~~i~~lc~eA~~~~~~aVcV-------~p~~v~~a~~~L~~s~v~-v~tVigFP~G~~~~~~Kv~Ea~~Ai~~G 108 (239)
T 3ngj_A 37 KADATEEQIRKLCSEAAEYKFASVCV-------NPTWVPLCAELLKGTGVK-VCTVIGFPLGATPSEVKAYETKVAVEQG 108 (239)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCSEEEE-------CGGGHHHHHHHHTTSSCE-EEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEE-------CHHHHHHHHHHhCCCCCe-EEEEeccCCCCCchHHHHHHHHHHHHcC
Confidence 34788999999999999999888885 566554444333324664 665553 2111 1 1356666779
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecC-CCHhHHHHHHHHHhhCCCee
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRG-FNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~-~n~~~i~~i~~~~~~~g~~~ 156 (298)
.+.|.+-++-. .. . .+.++.+.+-|+.+++. +. .+++ .+-.+ .+.+++....+.+.+.|.++
T Consensus 109 AdEIDmViNig--~l----k-~g~~~~v~~eI~~v~~a~~~~-~lKV--IlEt~~Lt~eei~~a~~ia~~aGADf 173 (239)
T 3ngj_A 109 AEEVDMVINIG--MV----K-AKKYDDVEKDVKAVVDASGKA-LTKV--IIECCYLTNEEKVEVCKRCVAAGAEY 173 (239)
T ss_dssp CSEEEEECCHH--HH----H-TTCHHHHHHHHHHHHHHHTTS-EEEE--ECCGGGSCHHHHHHHHHHHHHHTCSE
T ss_pred CCEEEEEeehH--Hh----c-cccHHHHHHHHHHHHHHhcCC-ceEE--EEecCCCCHHHHHHHHHHHHHHCcCE
Confidence 99998888652 11 1 35688888888888876 33 3333 22222 46788999999999989864
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=3.8 Score=34.91 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+. ++.+.+.++++.+.+.|+..+...| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...+
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p-vi~Gvg~~~t~~ai~la~~a~~ 94 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIP-VIAGTGSNNTAASIAMSKWAES 94 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCc-EEEeCCcccHHHHHHHHHHHHh
Confidence 45 9999999999999999999999987 99 677664 33555554431 2353 555555544544 4566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
.|.+.+.+.--.+. ..+-+.+.+-.+.+.++ ++ ++.+
T Consensus 95 ~Gadavlv~~P~y~---------~~s~~~l~~~f~~ia~a~~l-Piil 132 (291)
T 3a5f_A 95 IGVDGLLVITPYYN---------KTTQKGLVKHFKAVSDAVST-PIII 132 (291)
T ss_dssp TTCSEEEEECCCSS---------CCCHHHHHHHC-CTGGGCCS-CEEE
T ss_pred cCCCEEEEcCCCCC---------CCCHHHHHHHHHHHHHhcCC-CEEE
Confidence 89998877743321 12445666666655553 55 5544
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=8.8 Score=33.75 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 73 ~dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvp-ViaGvg~~st~eai~la~~A~ 151 (360)
T 4dpp_A 73 PDGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIK-VIGNTGSNSTREAIHATEQGF 151 (360)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCe-EEEecCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999977 99 777665 33555544432 2343 544454444544 345666
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 129 (298)
+.|.+.+.+---. |. ..+-+.+.+-.+.+.+. . ++.+
T Consensus 152 ~~Gadavlvv~Py-----Y~----k~sq~gl~~hf~~IA~a-~-Piil 188 (360)
T 4dpp_A 152 AVGMHAALHINPY-----YG----KTSIEGLIAHFQSVLHM-G-PTII 188 (360)
T ss_dssp HTTCSEEEEECCC-----SS----CCCHHHHHHHHHTTGGG-S-CEEE
T ss_pred HcCCCEEEEcCCC-----CC----CCCHHHHHHHHHHHHHh-C-CEEE
Confidence 7899977765322 21 13456666766666665 5 5543
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=82.83 E-value=6 Score=33.95 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. ..+. +-.-+.+..+.+ ..+...
T Consensus 28 ~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~p-viaGvg~~~t~~ai~la~~A~ 106 (307)
T 3s5o_A 28 ATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRL-LLAGSGCESTQATVEMTVSMA 106 (307)
T ss_dssp TTSCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSE-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCc-EEEecCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999987 99 777765 44666666553 2342 444454444543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNC 131 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~ 131 (298)
+.|.+.+.+.--.+ + + ...+-+.+.+-++.+.++ ++ ++.+.-
T Consensus 107 ~~Gadavlv~~P~y----~-~--~~~s~~~l~~~f~~ia~a~~l-PiilYn 149 (307)
T 3s5o_A 107 QVGADAAMVVTPCY----Y-R--GRMSSAALIHHYTKVADLSPI-PVVLYS 149 (307)
T ss_dssp HTTCSEEEEECCCT----T-G--GGCCHHHHHHHHHHHHHHCSS-CEEEEE
T ss_pred HcCCCEEEEcCCCc----C-C--CCCCHHHHHHHHHHHHhhcCC-CEEEEe
Confidence 78999887764332 1 1 112456777777777664 66 665443
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.63 E-value=9 Score=32.90 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=80.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccC-CCCcEEEEeCccchHh---hHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLK-GLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~-~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
.+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+.. .+. +-.-+.+..+.+ ..+...+
T Consensus 22 ~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvp-ViaGvg~~~t~~ai~la~~A~~ 100 (313)
T 3dz1_A 22 DDGKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQ-VIVGVSAPGFAAMRRLARLSMD 100 (313)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSE-EEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCc-EEEecCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999987 99 777665 346666554432 342 544444444543 4566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-C--CCCEEEEEEE-ecCCCHhHHHHHHHHHhh
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-G--YNPVKVNCVV-MRGFNDDEICDFVELTRD 151 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g--~~~v~i~~vi-~~~~n~~~i~~i~~~~~~ 151 (298)
.|.+.+.+.- |- |. .+-+.+.+-++.+.++ + + ++.+.-+- ..|.+.. .+-+.+++.+
T Consensus 101 ~Gadavlv~~----P~-~~-----~s~~~l~~~f~~va~a~~~~l-PiilYn~P~~tg~~l~-~~~~~~La~~ 161 (313)
T 3dz1_A 101 AGAAGVMIAP----PP-SL-----RTDEQITTYFRQATEAIGDDV-PWVLQDYPLTLSVVMT-PKVIRQIVMD 161 (313)
T ss_dssp HTCSEEEECC----CT-TC-----CSHHHHHHHHHHHHHHHCTTS-CEEEEECHHHHCCCCC-HHHHHHHHHH
T ss_pred cCCCEEEECC----CC-CC-----CCHHHHHHHHHHHHHhCCCCC-cEEEEeCccccCcCCC-HHHHHHHHHh
Confidence 8999887642 22 21 2567788888887764 5 7 66554321 1233332 3445555544
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=82.45 E-value=3.1 Score=35.38 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc-CCCCcEEEEeCccchH---hhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL-KGLKTLAMTTNGLTLA---RKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~-~~~~~v~i~TNG~ll~---~~~~~l~~~ 83 (298)
+..++.+.+.++++.+.+.|+..+.+.| || |+|..+ -.++++.+.+. .+ +-.-+.+..+. +..+...+.
T Consensus 13 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g---vi~Gvg~~~t~~ai~la~~A~~~ 89 (286)
T 2r91_A 13 GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR---VIVQVASLNADEAIALAKYAESR 89 (286)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS---EEEECCCSSHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC---EEEeeCCCCHHHHHHHHHHHHhc
Confidence 5679999999999999999999999987 99 888765 44777766653 23 33334333343 345666778
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
|.+.+.+.--.+ + + ..+-+.+.+-.+.+.++ ++ ++.+.
T Consensus 90 Gadavlv~~P~y----~-~---~~s~~~l~~~f~~va~a~~l-PiilY 128 (286)
T 2r91_A 90 GAEAVASLPPYY----F-P---RLSERQIAKYFRDLCSAVSI-PVFLY 128 (286)
T ss_dssp TCSEEEECCSCS----S-T---TCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred CCCEEEEcCCcC----C-C---CCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 999887764332 1 1 03557777777777664 66 66543
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=81.63 E-value=6.2 Score=32.72 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE-ecC-CCCHH
Q 022377 21 LRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI-SLD-TLVPA 98 (298)
Q Consensus 21 ~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i-Sld-g~~~~ 98 (298)
.+.++.+.+.|...|++. .|.. +++.+.++.+++. |++ ..+..|...-.+.++.+.+ .+|.|.+ |++ |+.-.
T Consensus 99 ~~~i~~~~~aGAd~itvH-~Ea~--~~~~~~i~~ir~~-G~k-~Gvalnp~Tp~e~l~~~l~-~vD~VlvMsV~PGfgGQ 172 (246)
T 3inp_A 99 DALIESFAKAGATSIVFH-PEAS--EHIDRSLQLIKSF-GIQ-AGLALNPATGIDCLKYVES-NIDRVLIMSVNPGFGGQ 172 (246)
T ss_dssp HHHHHHHHHHTCSEEEEC-GGGC--SCHHHHHHHHHTT-TSE-EEEEECTTCCSGGGTTTGG-GCSEEEEECSCTTC--C
T ss_pred HHHHHHHHHcCCCEEEEc-cccc--hhHHHHHHHHHHc-CCe-EEEEecCCCCHHHHHHHHh-cCCEEEEeeecCCCCCc
Confidence 345777778898888886 4554 4678899999884 995 9999996443355666655 4787654 654 22111
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 99 KFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 99 ~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
.+ ....++++-+.-+.+.+.|. .+ .+.+.-|.|.+.+.++ .+.|+++
T Consensus 173 ~f----i~~~l~KI~~lr~~~~~~~~-~~--~I~VDGGI~~~ti~~~----~~aGAD~ 219 (246)
T 3inp_A 173 KF----IPAMLDKAKEISKWISSTDR-DI--LLEIDGGVNPYNIAEI----AVCGVNA 219 (246)
T ss_dssp CC----CTTHHHHHHHHHHHHHHHTS-CC--EEEEESSCCTTTHHHH----HTTTCCE
T ss_pred cc----chHHHHHHHHHHHHHHhcCC-Ce--eEEEECCcCHHHHHHH----HHcCCCE
Confidence 10 01224443332223333455 33 3445566776655443 4567764
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=81.29 E-value=20 Score=29.02 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=82.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccchH----hhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLTLA----RKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~ll~----~~~~~l~~~~ 84 (298)
+...+.+++.++++++.++|+..|+ ++|.+...+..... +++ +.-.++ |..+. ...+...+.|
T Consensus 14 ~p~~t~~~i~~l~~~a~~~g~~~v~-------v~~~~v~~~~~~l~--~v~-v~~v~~~P~g~~~~~~k~~~~~~A~~~G 83 (225)
T 1mzh_A 14 KPHLSEKEIEEFVLKSEELGIYAVC-------VNPYHVKLASSIAK--KVK-VCCVIGFPLGLNKTSVKVKEAVEAVRDG 83 (225)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCSEEE-------ECGGGHHHHHHHCS--SSE-EEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEE-------ECHHHHHHHHHHhc--CCc-eeeEecCCCCccchhhhHHHHHHHHHcC
Confidence 3457999999999999999988887 66666655443322 443 443343 32221 2345667789
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
.+.|.+-++-.. .+ .+.++.+.+-++.+++..- ++.+.+.+ .++.+.+++.++.+.+.+.|+++-
T Consensus 84 ad~Id~viN~g~------~~-~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I 149 (225)
T 1mzh_A 84 AQELDIVWNLSA------FK-SEKYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFI 149 (225)
T ss_dssp CSEEEEECCHHH------HH-TTCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCEEEEEecHHH------Hh-cCChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 998886665321 22 2456788888888888643 44444422 234567789999999999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 298 | ||||
| d1tv8a_ | 327 | c.1.28.3 (A:) Molybdenum cofactor biosynthesis pro | 1e-50 |
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Score = 168 bits (424), Expect = 1e-50
Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 2/293 (0%)
Query: 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKG 60
+ + PK +LL+ +E+ R+A ++ GV KIR+TGGEP +R+D++ L+++ G
Sbjct: 34 VFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDG 93
Query: 61 LKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120
++ + +TTNGL L + KL ++GL +N+SLD + F+ + R +
Sbjct: 94 IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYA 153
Query: 121 EVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPF-DGNVWNVKKLVPYAE 179
VKVN V+ +G NDD+I +E +D+ I IRFIEFM + N W+ K+V E
Sbjct: 154 TSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDE 213
Query: 180 MLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239
ML + + F + E AK ++ + ITS+++ FC+ C R RL +DG F
Sbjct: 214 MLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKF 273
Query: 240 KVCLFGPSE-VSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANR 291
CLF + +++ +R +D+EL+E A + + ++ ANR
Sbjct: 274 YGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANR 326
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 100.0 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 98.79 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 94.65 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 94.54 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 92.74 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 88.3 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 86.68 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 84.3 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 83.9 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 83.74 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 83.55 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 81.21 |
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.6e-33 Score=249.09 Aligned_cols=266 Identities=33% Similarity=0.585 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
..+.++..+||.|++.++++++.++|+..|.|+||||++++++.+++.++.+..+.. ..++|||.++ ++.+++|.++|
T Consensus 39 ~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGEp~l~~~~~e~i~~~~~~~~~~-~~~~Tng~ll~~~~~~~l~~~g 117 (327)
T d1tv8a_ 39 FVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIE-DIGLTTNGLLLKKHGQKLYDAG 117 (327)
T ss_dssp CCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGSTTHHHHHHHHTTCTTCC-EEEEEECSTTHHHHHHHHHHHT
T ss_pred CccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCcccccccHHHHHHHHhhhcccc-ccccccccccchhHHHHHHHcC
Confidence 345556778999999999999999999999999999999999999888887754553 6677777777 67899999999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeec
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
++.|+||+||.++++|+.+|+.+ .|++++++++.+.++|+ ++.++++++++.|.+++.++++++..+++++.+..+++
T Consensus 118 ~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~-~~~~~~~v~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (327)
T d1tv8a_ 118 LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL-NVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMD 196 (327)
T ss_dssp CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC-EEEEEEEECTTTTGGGHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCC-CcceeEEEecCccccccHHHHHHHHhhccccceeeeec
Confidence 99999999999999999999875 49999999999999999 99999999988899999999999999999888887776
Q ss_pred CCC-CCCcccCCCCHHHHHHHHHHhCCCceecCC-CCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceee
Q 022377 164 FDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQD-HPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKV 241 (298)
Q Consensus 164 ~~~-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~p 241 (298)
... ........++.++........+ .+..... .......+|........++........+|++|+.+.|+|||+|+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~I~~dG~v~P 275 (327)
T d1tv8a_ 197 VGNDNGWDFSKVVTKDEMLTMIEQHF-EIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYG 275 (327)
T ss_dssp BCSSSSBCCSSCCCHHHHHHHHHHHS-CEEEECCSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEES
T ss_pred ccCcccccccccccHHHHHHHHHHhc-ccccccccccccchhheeccccCcccceeccccccccCccCeEEEecCceEEe
Confidence 543 3344445566777766666655 3433222 223334455555545666776677777888999999999999999
Q ss_pred cCCCCC-CCCcchHhhcCCCHHHHHHHHHHHHHhh
Q 022377 242 CLFGPS-EVSLRDPLRQNASDDELREIIGAAVKRK 275 (298)
Q Consensus 242 C~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (298)
|.+.+. ..+++++++++...+.|.+.|+. +|++
T Consensus 276 C~~~~~~~~n~~~~l~~~~~~~~l~~~~~~-iw~~ 309 (327)
T d1tv8a_ 276 CLFATVDGFNVKAFIRSGVTDEELKEQFKA-LWQI 309 (327)
T ss_dssp SSCCSSCCCCHHHHHHTCCCHHHHHHHHHH-HHHT
T ss_pred CCCCCcCCcCHHHHHhcCCCHHHHHHHHHH-HHHc
Confidence 988764 68899999999888888887765 4553
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.7e-08 Score=86.61 Aligned_cols=168 Identities=15% Similarity=0.215 Sum_probs=126.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc-c---HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK-D---IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLT 86 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-~---~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~ 86 (298)
...++.|++.+.++.+.+.|...+.+.||.-.... . +.++++.+++. .. .+.++...+ .+.++.|+++|++
T Consensus 70 ~~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~-~~---~~~~~~~~l~~e~l~~lk~aG~~ 145 (312)
T d1r30a_ 70 ERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-GL---EACMTLGTLSESQAQRLANAGLD 145 (312)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHT-TS---EEEEECSSCCHHHHHHHHHHCCC
T ss_pred ccccchHHHHHHHHHHHHcCCEEEEEccCCCCCchhhHHHHHHHHHhcccc-cc---eeeeccccchHHHHHHhhcccce
Confidence 45689999999999999999999999877543332 2 33555555542 33 344444444 6789999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC---eeEEEeeec
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI---NIRFIEFMP 163 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~---~~~~~~~~p 163 (298)
.+.+.+++. ++.+..+.+..+++..++.++.++++|+ ++...+++.-+.+.++..+.+..+++++. .+.+..+.|
T Consensus 146 ~i~~~iEs~-~~~~~~~~~~~~~~~~~~~~~~a~~~Gi-~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p 223 (312)
T d1r30a_ 146 YYNHNLDTS-PEFYGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVK 223 (312)
T ss_dssp EEECCCBSC-HHHHHHHCCSSCHHHHHHHHHHHHHHHC-EEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCC
T ss_pred eEecccchh-hhhhccCCCCCCHHHHHHHHHHHHHhcc-ceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccC
Confidence 999999995 6677777777889999999999999999 88877777666788887777777777655 356667777
Q ss_pred CCCCCCcccCCCCHHHHHHHHH
Q 022377 164 FDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 164 ~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..++........+..+.+..++
T Consensus 224 ~~gT~l~~~~~~~~~e~l~~iA 245 (312)
T d1r30a_ 224 VKGTPLADNDDVDAFDFIRTIA 245 (312)
T ss_dssp CTTSTTSSCCCCCHHHHHHHHH
T ss_pred CCCcccccccCCCHHHHHHHHH
Confidence 7777666656677777766654
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=9.4e-08 Score=85.84 Aligned_cols=132 Identities=13% Similarity=0.243 Sum_probs=109.1
Q ss_pred CCEEEEcCCccCcc-cc-HHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 32 VDKIRLTGGEPTVR-KD-IEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 32 ~~~v~~tGGEPll~-~~-~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
+..|.|.||.|.+- ++ +.++++.+++...+. .+++.+|...+ .+.+..|++.|+.+|++.+.+.++++...+.+
T Consensus 102 v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R 181 (441)
T d1olta_ 102 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNR 181 (441)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTC
T ss_pred cceeEecCCCcCCCCHHHHHHHHHHHhhhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhc
Confidence 45888999999974 44 668999887753321 47888998777 56899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC-eeEEEeeec
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI-NIRFIEFMP 163 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p 163 (298)
..+.+.+.+.++.+++.|+..+.+.. .-.||++.+.+.+-++.+.+++. .+.+..+..
T Consensus 182 ~~~~~~~~~~~~~~r~~g~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~ 241 (441)
T d1olta_ 182 EQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAH 241 (441)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHhcccceeecccccccCCcchHHHHHHHHHHHhhCCCcccccccee
Confidence 99999999999999999984577765 44588999999999999999888 455655543
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=94.65 E-value=0.71 Score=37.10 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc---------cCccccHHHHHHHHhcc-CCCCcEEEEeC-c
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE---------PTVRKDIEEACFHLSKL-KGLKTLAMTTN-G 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE---------Pll~~~~~~ii~~~~~~-~~~~~v~i~TN-G 70 (298)
+|+|.|.. +..++.|+..++++.+.+.|+..|-+..+- +.....-.+.+..+... .+. .+...-. +
T Consensus 15 lRDG~Q~~--~~~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~i~~~~~~~ 91 (289)
T d1nvma2 15 LRDGSHAI--RHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHA-QIATLLLPG 91 (289)
T ss_dssp TTHHHHHT--TTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSS-EEEEEECBT
T ss_pred cccccCCC--CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchh-HHHHHHhhh
Confidence 45555554 578999999999999999999999885321 11222344555555442 222 2333222 3
Q ss_pred cchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 71 LTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 71 ~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
.-..+.+....+.+.+.+.+..... ..+...+.++.+++.|+ .+.+.+........+.+.++++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~r~~~~~~------------~~~~~~~~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (289)
T d1nvma2 92 IGSVHDLKNAYQAGARVVRVATHCT------------EADVSKQHIEYARNLGM-DTVGFLMMSHMIPAEKLAEQGKLME 158 (289)
T ss_dssp TBCHHHHHHHHHHTCCEEEEEEETT------------CGGGGHHHHHHHHHHTC-EEEEEEESTTSSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccceEEEeehh------------hhhhHhHHHHHHHHhCC-ceeeEeeeccccCchhhhHHHHhhc
Confidence 2223456667777888777764432 12345667788888999 8877776665456677889999999
Q ss_pred hCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 151 DRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.|++ .+.+....+.. .+....++++.+.+.+
T Consensus 159 ~~g~~--~I~l~DT~G~~----~P~~v~~~v~~l~~~~ 190 (289)
T d1nvma2 159 SYGAT--CIYMADSGGAM----SMNDIRDRMRAFKAVL 190 (289)
T ss_dssp HHTCS--EEEEECTTCCC----CHHHHHHHHHHHHHHS
T ss_pred cccce--eeeecchhhcc----cchhHHHHHHHHHHHh
Confidence 98875 34444433321 1123456666676665
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.54 E-value=0.39 Score=38.14 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccch---------HhhHHHHHHc
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTL---------ARKLPKLKES 83 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll---------~~~~~~l~~~ 83 (298)
|++.++..+++.+..+ +..+.|++|--.+.|. +.+.++.++++ ++ .+.+-|+++ ++.++..++.
T Consensus 23 lgl~~leD~Le~ag~y-ID~~K~g~Gt~~l~p~~~l~eKI~l~~~~-~V---~v~~GGtlfE~a~~qg~~~~y~~~~~~l 97 (251)
T d1qwga_ 23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSAVIDRDVVKEKINYYKDW-GI---KVYPGGTLFEYAYSKGKFDEFLNECEKL 97 (251)
T ss_dssp CCHHHHHHHHHHHGGG-CSEEEECTTGGGGSCHHHHHHHHHHHHTT-TC---EEEECHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhh-eeEEEecCceeeecCHHHHHHHHHHHHHc-CC---eEeCCcHHHHHHHHcCCHHHHHHHHHHc
Confidence 8999999999988776 7899999999988886 66999999986 55 567788764 3457888889
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecC-------CCHhHHHHHHHHHhhCCCee
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG-------FNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~-------~n~~~i~~i~~~~~~~g~~~ 156 (298)
|++.|-|| ||.- .-+.+.-.+.|+.+++.|+ .|. +=+.+. ...+++.+.++-..+.|...
T Consensus 98 Gf~~iEiS-dg~~---------~i~~~~~~~~I~~~~~~G~-~V~--~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ 164 (251)
T d1qwga_ 98 GFEAVEIS-DGSS---------DISLEERNNAIKRAKDNGF-MVL--TEVGKKMPDKDKQLTIDDRIKLINFDLDAGADY 164 (251)
T ss_dssp TCCEEEEC-CSSS---------CCCHHHHHHHHHHHHHTTC-EEE--EEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSE
T ss_pred CCCEEEEc-CCcc---------CCCHHHHHHHHHHHHhCCC-EEe--ecccCCCCCCccccCHHHHHHHHHHHHHCCCce
Confidence 99999999 5532 1245677889999999998 543 322321 12233333344444567754
Q ss_pred EEEe
Q 022377 157 RFIE 160 (298)
Q Consensus 157 ~~~~ 160 (298)
..++
T Consensus 165 ViiE 168 (251)
T d1qwga_ 165 VIIE 168 (251)
T ss_dssp EEEC
T ss_pred eEee
Confidence 4443
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=92.74 E-value=0.18 Score=40.12 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH---------hhHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA---------RKLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~---------~~~~~l~~~~ 84 (298)
-|+..++..+++.+..+ +..+.|++|--+++|.+.+.++.++++ + |.+.+-|++++ +.++..++.|
T Consensus 25 Gl~l~~leD~Le~~g~y-ID~vK~g~Gts~l~~~L~eKI~l~~~~-~---V~v~~GGtlfE~a~~~~~~~~y~~~~~~lG 99 (249)
T d1u83a_ 25 GYPLQFFKDAIAGASDY-IDFVKFGWGTSLLTKDLEEKISTLKEH-D---ITFFFGGTLFEKYVSQKKVNEFHRYCTYFG 99 (249)
T ss_dssp SCCHHHHHHHHHHHGGG-CCEEEECTTGGGGCTTHHHHHHHHHHT-T---CEEEECHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhhhh-eeEEEecCceeccCHHHHHHHHHHHHc-C---CeEeCCCHHHHHHHHcCCHHHHHHHHHHcC
Confidence 38999999999988776 789999999999999988999999986 5 45778887653 4567788889
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV 122 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~ 122 (298)
++.|-|| ||.-+ -+.+.-.+.|+.+.+.
T Consensus 100 f~~iEiS-dg~i~---------i~~~~~~~~I~~~~~~ 127 (249)
T d1u83a_ 100 CEYIEIS-NGTLP---------MTNKEKAAYIADFSDE 127 (249)
T ss_dssp CSEEEEC-CSSSC---------CCHHHHHHHHHHHTTT
T ss_pred CCEEEEC-CCccc---------CCHHHHHHHHHHHHhc
Confidence 9999999 55321 2345556666666664
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=88.30 E-value=1.8 Score=34.69 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..+.+.| || +.|..+ -.++++.+.+. ..+. +-+.+.+..+. +..+...
T Consensus 17 ~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~-vi~gv~~~s~~~~i~~a~~a~ 95 (292)
T d1xkya1 17 INGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVP-VIAGTGSNNTHASIDLTKKAT 95 (292)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCce-EEEecCcccHHHHHHHHHHHH
Confidence 45689999999999999999999999976 89 555554 33555544332 2453 66666666564 3466778
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.. + ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 96 ~~Gad~ilv~pP~~----~-----~~s~~~i~~~~~~v~~~~~~-pi~iY 135 (292)
T d1xkya1 96 EVGVDAVMLVAPYY----N-----KPSQEGMYQHFKAIAESTPL-PVMLY 135 (292)
T ss_dssp HTTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHHTCSS-CEEEE
T ss_pred HcCCCEEEECCCCC----C-----CCCHHHHHHHHHHHhccCCC-cEEEE
Confidence 88999988874321 1 13456777777777764 55 66553
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.68 E-value=2.3 Score=34.12 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..+.+.| || +.|..+ -.++++.+.+. .... +...+.+..+.+ ..+...
T Consensus 21 ~dg~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~-vi~g~~~~s~~~~i~~a~~a~ 99 (296)
T d1xxxa1 21 GDGSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRAR-VIAGAGTYDTAHSIRLAKACA 99 (296)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccc-eEeccccchhHHHHHHHHHHH
Confidence 45689999999999999999999999865 88 666654 33444444331 2343 555565655543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+..-... ..+-+.+.+-.+.+.++ .+ ++.+
T Consensus 100 ~~Gad~v~i~~P~~~---------~~~~~~l~~~~~~v~~~~~~-pi~l 138 (296)
T d1xxxa1 100 AEGAHGLLVVTPYYS---------KPPQRGLQAHFTAVADATEL-PMLL 138 (296)
T ss_dssp HHTCSEEEEECCCSS---------CCCHHHHHHHHHHHHTTCSS-CEEE
T ss_pred HhcCCeEEEEeccCC---------CCCHHHHHHHHHHHHHhcCC-CEEE
Confidence 789999888754431 12356777777877775 44 5544
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=84.30 E-value=7.1 Score=30.03 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--cCCc--cCccccHHHHHHHHhccCCCC-cEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRL--TGGE--PTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~--tGGE--Pll~~~~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
.+...+.+-++.+.+.|+..+++ .-|. |-+... .++++.+++...+. .+.+-++ .-.+.++.+.++|.+.|.
T Consensus 20 ~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~-~~~v~~i~~~t~~~~dvHLMv~--~P~~~i~~~~~~g~~~i~ 96 (230)
T d1rpxa_ 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIG-PLVVDSLRPITDLPLDVHLMIV--EPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-HHHHHHHGGGCCSCEEEEEESS--SHHHHHHHHHHTTCSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCccccC-hHHHhhhhhccCceeeeeeeec--chhhhHHHHhhcccceeE
Confidence 34556677788888888776555 4454 444333 24566666543432 2444332 124578999999999999
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVE 147 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~ 147 (298)
+.....+. . ...+.++.++++|. .+++ ++.|....+.+..++.
T Consensus 97 ~H~E~~~~---------~---~~~~~i~~ik~~g~-k~Gi--alnp~T~~~~l~~~l~ 139 (230)
T d1rpxa_ 97 VHCEQSST---------I---HLHRTINQIKSLGA-KAGV--VLNPGTPLTAIEYVLD 139 (230)
T ss_dssp EECSTTTC---------S---CHHHHHHHHHHTTS-EEEE--EECTTCCGGGGTTTTT
T ss_pred Eecccccc---------c---cHHHHHHHHHHcCC-eEEE--EeCCCCCHHHHHHHHh
Confidence 98875321 1 23455777788888 6654 6677545555554443
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=2.6 Score=33.74 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. .... +.+.+.+..+. +..+...
T Consensus 16 ~dg~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~p-vi~gv~~~s~~~~i~~a~~a~ 94 (295)
T d1hl2a_ 16 QQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIK-LIAHVGCVSTAESQQLAASAK 94 (295)
T ss_dssp TTSSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSE-EEEECCCSSHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccc-eeeccccchhhHHHHHHHHHH
Confidence 45679999999999999999999999987 89 666654 34555544332 2342 44444444443 3567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE 121 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~ 121 (298)
+.|.+.+.+.--.. + ..+-+.+++-.+.+.+
T Consensus 95 ~~Gad~~~v~~p~~----~-----~~~~~~~~~~~~~~~~ 125 (295)
T d1hl2a_ 95 RYGFDAVSAVTPFY----Y-----PFSFEEHCDHYRAIID 125 (295)
T ss_dssp HHTCSEEEEECCCS----S-----CCCHHHHHHHHHHHHH
T ss_pred hcCCceeeeeeccc----c-----CCChHHHHHHHHHHhc
Confidence 78999888874432 1 1234666666665554
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.74 E-value=1.7 Score=34.93 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=72.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHh---hHHHHHHc
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLAR---KLPKLKES 83 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~---~~~~l~~~ 83 (298)
++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ... +...+.+..+.+ ..+...+.
T Consensus 13 ~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~-~~~-~i~gv~~~st~~~i~~a~~a~~~ 90 (293)
T d1w3ia_ 13 KDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV-TNK-IIFQVGGLNLDDAIRLAKLSKDF 90 (293)
T ss_dssp TTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT-CSC-EEEECCCSCHHHHHHHHHHGGGS
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhh-ccc-cccccccchhhhhhhhhhhhhhh
Confidence 55689999999999999999999999976 88 777665 55778877764 222 334444444543 44556667
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
|.+.+.+..-. .| ...+-+.+.+-++.+.++ ++ ++.+.
T Consensus 91 Ga~~~~~~~P~----~~----~~~~~~~i~~~f~~Ia~a~~~-pi~lY 129 (293)
T d1w3ia_ 91 DIVGIASYAPY----YY----PRMSEKHLVKYFKTLCEVSPH-PVYLY 129 (293)
T ss_dssp CCSEEEEECCC----SC----SSCCHHHHHHHHHHHHHHCSS-CEEEE
T ss_pred ccccccccccc----hh----ccchHHHHHHHHHHHHHhhcc-ceeee
Confidence 89987765322 11 123456677777777665 56 65543
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=83.55 E-value=2.6 Score=33.64 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=70.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+.+++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. .+.. +.+.+.+..+.+ ..+...+
T Consensus 16 d~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~-vi~gv~~~st~~ai~~a~~A~~ 94 (295)
T d1o5ka_ 16 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIP-VIVGAGTNSTEKTLKLVKQAEK 94 (295)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC-EEEECCCSCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCc-eEeecccccHHHHHHHHHHHHH
Confidence 4689999999999999999999999976 88 667654 23444433331 2443 555555555543 4566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
.|.+.+.+.--. | ...+-+.+++-.+.+.++ .+ ++.+
T Consensus 95 ~Gad~v~v~pP~-----y----~~~s~~~i~~~~~~ia~a~~~-pi~i 132 (295)
T d1o5ka_ 95 LGANGVLVVTPY-----Y----NKPTQEGLYQHYKYISERTDL-GIVV 132 (295)
T ss_dssp HTCSEEEEECCC-----S----SCCCHHHHHHHHHHHHTTCSS-CEEE
T ss_pred cCCCEEEEeCCC-----C----CCCCHHHHHHHHHHHHhccCC-CeeE
Confidence 899988876422 1 123556777777777764 44 4443
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=81.21 E-value=11 Score=29.70 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHhhH---HHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLARKL---PKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~~~---~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..+.+.| || +.|..+ -.++++.+.+. .... +.+.+.+..+.+.+ +...
T Consensus 15 ~d~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~-vi~g~~~~s~~~~i~~~~~a~ 93 (292)
T d2a6na1 15 EKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIP-VIAGTGANATAEAISLTQRFN 93 (292)
T ss_dssp TTSSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC-EEEECCCSSHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccce-eEeecccchHHHHHHHhccHH
Confidence 45689999999999999999999999987 99 667654 33444433331 2443 66666665565444 4444
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.--.. + ..+-+.+++-.+.+.++ ++ ++.+
T Consensus 94 ~~Gad~~~~~pP~~----~-----~~~~~~i~~~f~~v~~~~~~-pi~i 132 (292)
T d2a6na1 94 DSGIVGCLTVTPYY----N-----RPSQEGLYQHFKAIAEHTDL-PQIL 132 (292)
T ss_dssp TSSCCEEEEECCCS----S-----CCCHHHHHHHHHHHHHTCSS-CEEE
T ss_pred hcCCcceeccCCCC----C-----CCCHHHHHHHHHHHhhccCC-cEEE
Confidence 56888777774322 1 23567788888888774 55 5544
|