Citrus Sinensis ID: 022379

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MADDEFLEDEFDWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLLAVVKSRRCKASRRKMKMTSHALSVLA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccccccccEEEccccccccHHHHHccccccccHHHcccccccEEEcc
Coil and Loop (DISEMBL)
maddefledefdwnnllteltdpstaeifsnpspdgsvspwigDIESMLmndnddnselepnqqslddffadvfvdqpspasgaevielptdkdqngadesgnaspaeenvldepevnnsdknyndtdndnaddpiskKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQkgnaygasltKQESAVLLLESLLLGSLLWFLGIMclftlpkpiwshlesvplvqveekapgnlvqreagSKNYLLAVVKSRRCKASRRKMKMTSHALSVLA
Flexible Loop (DISEMBL)
MADDEFLEDEFDWNNLLTELTDPSTAEifsnpspdgsvSPWIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESgnaspaeenvldepevnnsdknyndtdndnaddpiskkrrrqlrnrdaavrsrerkkmyvkdlemksrYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPgnlvqreagsknyllavvksrrckasrrkmkmtshalsvla
Low Complexity Region (SEG)
MADDEFLEDEFDWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVnnsdknyndtdndnaddPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVllleslllgsllwflgIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLLAVVKSRRCKASRRKMKMTSHALSVLA
Disordered region (IsUnstruct)
**********FDWNNLLT**************************************************FFADVF*******************************************************************************************MKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKA**NLV****GSKNYLLAVVK**********************
Disordered Region (DISOPRED)
***DEFLEDEFDWNNLL************************************************************************************************************************************************KDLEMKSRYLESECRKLGRLLHCVLAENQ*****************************LLGSLLWFLGIMCLF*******************************************************TSHALSVLA
Disordered Region (DISEMBL)
MADDEFLEDEFDWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDK****************NVLDEPEVNNSDKNYNDTDNDNADDPISKK***************ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLLAVVKS*********************
Disordered Region (DISPRO)
*ADDEFLEDEFDWNNLLTELTD**************SVSPWIGDIESMLMNDN********NQQSLDDFFADVFVD********************************************************DDPISKK*****RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPL*********NL*Q***GSKNYLLAVVKSRRCKASRRKMKMTSHALSVLA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADDEFLEDEFDWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLLAVVKSRRCKASRRKMKMTSHALSVLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q9C7S0	295	bZIP transcription factor	yes	no	0.848	0.857	0.430	9e-31
P14233	242	TGACG-sequence-specific D	N/A	no	0.221	0.272	0.432	1e-05
Q554P0	787	Probable basic-leucine zi	yes	no	0.187	0.071	0.375	7e-05
Q5UEM7	367	Cyclic AMP-responsive ele	yes	no	0.406	0.329	0.311	0.0003
Q3SZZ2	261	X-box-binding protein 1 O	yes	no	0.493	0.563	0.302	0.0008

>sp|Q9C7S0|BZI60_ARATH bZIP transcription factor 60 OS=Arabidopsis thaliana GN=BZIP60 PE=2 SV=1

 Score =  134 bits (337), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 120/279 (43%), Positives = 162/279 (58%), Gaps = 26/279 (9%)

Query: 20  LTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSE--LEPNQQSLDDFFADVFVDQ 77
           + D   AE F   SPD     WIG+IE+ LMND +   E  +E +QQS+ DF AD+ VD 
Sbjct: 25  VIDSLPAEDFLQSSPDS----WIGEIENQLMNDENHQEESFVELDQQSVSDFIADLLVDY 80

Query: 78  PSPASGAEVIELPTDK-----DQNGADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNA 132
           P+  SG+  ++L  DK         AD+SG  +   + V+++   ++  + ++D D +  
Sbjct: 81  PTSDSGS--VDLAADKVLTVDSPAAADDSGKEN--SDLVVEKKSNDSGSEIHDDDDEEGD 136

Query: 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192
           DD ++KKRRR++RNRDAAVRSRERKK YV+DLE KS+YLE EC +LGR+L C +AENQSL
Sbjct: 137 DDAVAKKRRRRVRNRDAAVRSRERKKEYVQDLEKKSKYLERECLRLGRMLECFVAENQSL 196

Query: 193 RFSLQKGNAYGAS-LTKQESAV--LLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPL 249
           R+ LQKGN    + ++KQESAV  L    L     L  +  +CLF    P  SH +   L
Sbjct: 197 RYCLQKGNGNNTTMMSKQESAVLLLESLLLGSLLWLLGVNFICLF----PYMSHTKCCLL 252

Query: 250 VQVEEKAPGNLVQREAGSKNYLLAVVKSRRCKASRRKMK 288
                  P  LV    GS +       SRRCK SR +MK
Sbjct: 253 ----RPEPEKLVLNGLGSSSKPSYTGVSRRCKGSRPRMK 287

Transcription factor involved in the endoplasmic reticulum (ER) stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|P14233|TGA1B_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 127 TDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186
           +DN N D+   KKR R +RNR++A  SR+RKK YV++LE K R + S  + L   +  ++
Sbjct: 175 SDNVNNDED-EKKRARLVRNRESAQLSRQRKKHYVEELEDKVRIMHSTIQDLNAKVAYII 233

Query: 187 AENQSLR 193
           AEN +L+
Sbjct: 234 AENATLK 240

Binds specifically to the DNA sequence 5'-TGACG-3'.

Nicotiana tabacum (taxid: 4097)

>sp|Q554P0|BZPJ_DICDI Probable basic-leucine zipper transcription factor J OS=Dictyostelium discoideum GN=bzpJ PE=3 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 38/56 (67%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193
           KK+RR ++NR+ A +SR R+K+YV+++E K +    +C  +   L+ V  EN++L+
Sbjct: 551 KKQRRLVKNREYASQSRSRRKIYVENIETKLQKTNQDCASIKSQLNSVKEENKALK 606

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5UEM7|CR3L4_RAT Cyclic AMP-responsive element-binding protein 3-like protein 4 OS=Rattus norvegicus GN=Creb3l4 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 30/151 (19%)

Query: 131 NADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190
            A++ I KK RR++RN+ +A  SR RKK Y+  LE +      + +KL R +  +  +N 
Sbjct: 184 KAEERILKKIRRKIRNKQSAQDSRRRKKEYIDGLESRVAACSEQNQKLQRKVQELERQNI 243

Query: 191 SL---RFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESV 247
           SL      LQK  A  +S   Q S  +L+       LL+ L ++ L     P +S  +S 
Sbjct: 244 SLVAQVHQLQKFTAQTSSRAAQTSTCVLI-------LLFSLALIIL-----PSFSPFQSQ 291

Query: 248 PLVQVEEKAPGNLVQREAGSKNYLLAVVKSR 278
           P               EA S+ Y L  V SR
Sbjct: 292 P---------------EARSEGYQLHGVISR 307

Transcriptional activator that may play a role in the unfolded protein response. Binds to the UPR element (UPRE) but not to CRE element. Preferentially binds DNA with to the consensus sequence 5'-T[GT]ACGT[GA][GT]-3' and has transcriptional activation activity from UPRE. Binds to NF-kappa-B site and has transcriptional activation activity from NF-kappa-B-containing regulatory elements. Increases the binding of CREM isoform Delta with CRE. The CREM isoform Delta-CREB3L4 heterodimer functions through CRE but not through UPRE and may recruit HIRA to CRE to regulate histone exchange.

Rattus norvegicus (taxid: 10116)

>sp|Q3SZZ2|XBP1_BOVIN X-box-binding protein 1 OS=Bos taurus GN=XBP1 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 25/172 (14%)

Query: 73  VFVDQPSPASGA-EVIELPTDKDQNGADESGNA----SPAEENVLDEPEVNNSDKNYNDT 127
           V     SPA+GA +V+ L       G   +G A     P ++    E   +         
Sbjct: 3   VVAPAQSPAAGAPKVLLLSGQPAATGGAPAGRALPVMVPGQQGASPE-GASGVPPQARKR 61

Query: 128 DNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL---GRLL-- 182
                  P  K  RR+L+NR AA  +R+RKK  + +LE +   LE E +KL    +LL  
Sbjct: 62  QRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLRE 121

Query: 183 --HCVLAENQSLRFSL------------QKGNAYGASLTKQESAVLLLESLL 220
             H ++ ENQ LR  L             KGN  G      ESA L L + L
Sbjct: 122 KTHGLVVENQELRQRLGMDALVTEEEAETKGNGAGLVAGSAESAALRLRAPL 173

Transcription factor essential for hepatocyte growth, the differentiation of plasma cells, the immunoglobulin secretion, and the unfolded protein response (UPR). Acts during endoplasmic reticulum stress (ER) by activating unfolded protein response (UPR) target genes via direct binding to the UPR element (UPRE). Binds DNA preferably to the CRE-like element 5'-GATGACGTG[TG]N(3)[AT]T-3', and also to some TPA response elements (TRE). Binds to the HLA DR-alpha promoter.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
255539350	306	conserved hypothetical protein [Ricinus	0.936	0.911	0.531	5e-60
224086126	306	predicted protein [Populus trichocarpa]	0.919	0.895	0.493	6e-56
359491877	322	PREDICTED: bZIP transcription factor 60-	0.993	0.919	0.478	5e-52
449485072	351	PREDICTED: bZIP transcription factor 60-	0.895	0.760	0.449	1e-48
156712750	299	basic region leucine zipper protein [Nic	0.919	0.916	0.444	2e-47
60459369	286	bZIP transcription factor protein [Capsi	0.835	0.870	0.478	2e-46
170773912	289	bZIP transcription factor protein [Solan	0.805	0.830	0.474	2e-41
297745615	192	unnamed protein product [Vitis vinifera]	0.590	0.916	0.622	2e-39
449455736	277	PREDICTED: bZIP transcription factor 60-	0.708	0.761	0.436	5e-38
351724049	284	bZIP transcription factor bZIP68 [Glycin	0.852	0.894	0.390	6e-38

>gi|255539350|ref|XP_002510740.1| conserved hypothetical protein [Ricinus communis] gi|223551441|gb|EEF52927.1| conserved hypothetical protein [Ricinus communis]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 159/299 (53%), Positives = 205/299 (68%), Gaps = 20/299 (6%)

Query: 10  EFDWNNLLTE-----LTDPSTA-EIFSNPSPDGSVSPWIGDIESMLMNDNDDNSELEPNQ 63
           + DW+NL  +     +T+ S++ E FS+ SPD SVS WI  +E+MLM D+D  +  EP+Q
Sbjct: 18  QIDWDNLFDDNSPLLVTESSSSPENFSDSSPD-SVSLWIDQVENMLMKDDDVLASAEPSQ 76

Query: 64  QSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVNNSDKN 123
              + F AD+ VD  SPA G+  ++L TDKD   + ++G    +E     E  ++N++  
Sbjct: 77  HFSEGFLADLLVD--SPADGS--VDLSTDKDSIVSPDNGFGGASETEKEGEKILSNNEAK 132

Query: 124 YNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLH 183
             D D+++ DDP+SKKRRRQLRNRDAAVRSRERKK+YV+DLE+KSRYLE ECR+LGRLL 
Sbjct: 133 V-DNDSEDPDDPVSKKRRRQLRNRDAAVRSRERKKIYVRDLEIKSRYLEGECRRLGRLLQ 191

Query: 184 CVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSH 243
           C +AENQ+LR  LQKGNA+G +L KQESAVLLLESLLLGSLLWFLGIMCLFTL       
Sbjct: 192 CFVAENQALRLGLQKGNAFGVTLAKQESAVLLLESLLLGSLLWFLGIMCLFTLSAMSQLT 251

Query: 244 LESVPLVQVEEKAPGNLVQREAGSKNYL----LAVVKSRRCKASRRKMKMTSHALSVLA 298
           L +VPL  V +K P    +R AGSK +      + V SR+CKASR +MK  S  + VL 
Sbjct: 252 LVAVPLENVGKKVP----ERGAGSKMFTSLANQSFVNSRKCKASRTRMKAESVFIGVLV 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086126|ref|XP_002307824.1| predicted protein [Populus trichocarpa] gi|222857273|gb|EEE94820.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 151/306 (49%), Positives = 204/306 (66%), Gaps = 32/306 (10%)

Query: 5   EFLED-----EFDWNNLLT---------ELTDPSTAEI-----FSNPSPDGSVSPWIGDI 45
           EFLE      + DW+NLL          EL  P T ++      SN S   +VS WIG++
Sbjct: 2   EFLEGDDVLGQIDWDNLLDGFPDSDSIFELEPPLTTDLQPINDSSNSSSPATVSSWIGEV 61

Query: 46  ESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPA-SGAEVIELPTDKDQNGADESGNA 104
           E++LM D+DD  +     ++ + F AD+ VD PS   SG EV++  TDKD   +D++ + 
Sbjct: 62  ETLLMKDDDDKVD---QLENCNAFLADILVDSPSAHESGGEVLDASTDKDSTSSDDA-DG 117

Query: 105 SPAEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDL 164
            P E++       + +++  N+ + ++ DD +SKKRRRQLRN+DAAVRSRERKK++V+DL
Sbjct: 118 GPKEKD-------DGAEEKNNNDEEEDPDDIVSKKRRRQLRNKDAAVRSRERKKLHVRDL 170

Query: 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSL 224
           E+KSRYLE ECR+L RLL C +AEN +LR SLQ+GNA+G +  KQESAVLLLESLLLGSL
Sbjct: 171 EIKSRYLEGECRRLDRLLQCFIAENHALRLSLQRGNAFGVTSAKQESAVLLLESLLLGSL 230

Query: 225 LWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLLAVVKSRRCKASR 284
           LW LGIMCLF  P    S +  V L  +E+KAP N+ QR AGSK + +++  SRRCKASR
Sbjct: 231 LWLLGIMCLFPQPAMPQSTMVEVLLETMEKKAPENVAQRGAGSKIF-ISLANSRRCKASR 289

Query: 285 RKMKMT 290
            +MK+T
Sbjct: 290 PRMKLT 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491877|ref|XP_003634336.1| PREDICTED: bZIP transcription factor 60-like [Vitis vinifera]

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 155/324 (47%), Positives = 192/324 (59%), Gaps = 28/324 (8%)

Query: 1   MADDEFLEDEF-DWNNLLTELTDPSTAEIFSNPSPDGSVSP--------------WIGDI 45
           M D E  ED   DW  + +EL  P   E+     P  S SP              WIG+I
Sbjct: 1   MDDLEIGEDGIIDWEQMFSEL--PEDLEVLIGDPPLVSDSPPDVLSDSSPDSVSSWIGEI 58

Query: 46  ESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNAS 105
           E++LM D++D   +E NQ   +DF A   +D P+ A      +  +DKD    D +G A 
Sbjct: 59  ENLLMRDDNDEVVVEHNQDFGEDFLAGFVLDHPADAYADAHADASSDKDSTVLDSAGEAD 118

Query: 106 PAEE---NVLDE--PEVNNSDKNYNDTDNDNAD-DPISKKRRRQLRNRDAAVRSRERKKM 159
            + +   NV  +  PE    +    +  ND  D D  SKKRRRQLRNRDAAVRSRERKK 
Sbjct: 119 ASTDKNSNVCGDGSPEQEKINGYNGNAQNDGEDEDQASKKRRRQLRNRDAAVRSRERKKT 178

Query: 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESL 219
           YV+DLE+KSRYLESECR+LG LL C  AENQ+LR  LQ   A+GAS+TKQESAVLL+ESL
Sbjct: 179 YVRDLELKSRYLESECRRLGHLLQCCFAENQTLRLHLQNEKAFGASVTKQESAVLLMESL 238

Query: 220 LLGSLLWFLGIMCL-FTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNY----LLAV 274
           LLGSLLWFLGIMCL  +LP       E+VP+  VE+K   ++  R  GSK +    L + 
Sbjct: 239 LLGSLLWFLGIMCLALSLPVQFQLSREAVPMGSVEDKGQKSVAPRGPGSKIFELWLLQSY 298

Query: 275 VKSRRCKASRRKMKMTSHALSVLA 298
           VKS+RCKAS+ KMK  S A  VL 
Sbjct: 299 VKSKRCKASKTKMKPGSLAHGVLV 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485072|ref|XP_004157063.1| PREDICTED: bZIP transcription factor 60-like [Cucumis sativus]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/325 (44%), Positives = 192/325 (59%), Gaps = 58/325 (17%)

Query: 15  NLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDN--SELEPNQQSLDDFFAD 72
           N   E  +     +  + SPD S+S WI  IE+ L+ND++DN  S   P     D F AD
Sbjct: 17  NFFDEFPEVEFPVVQDSASPD-SISSWINHIENALLNDDEDNAPSLPTPPHDFCDSFLAD 75

Query: 73  VFVD---QPSPASGAEVIELPTDKDQNGADESGN----------ASPAEE-------NVL 112
           + VD   QPS      VI++ ++    G D + +          A+P ++       +VL
Sbjct: 76  LLVDSHEQPS------VIDVDSNASDCGNDLTNSQKEDVHKVSPAAPTDDCCGSFVADVL 129

Query: 113 DEPE------------VNNSDKNYNDTDNDNA---------------DDPISKKRRRQLR 145
            +              ++N+    +D++N                  DD +SKKRRRQLR
Sbjct: 130 ADAHGRSSGVDAVVDVLSNASNCGDDSNNSQKEKVDAASIDESVGEDDDAVSKKRRRQLR 189

Query: 146 NRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS 205
           NRDAAVRSRERKKMYVKDLEMKS++LE ECR+LGRLL C  AENQ+LRFSLQ G A G S
Sbjct: 190 NRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRLLQCYCAENQALRFSLQMGGASGVS 249

Query: 206 LTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGN--LVQR 263
           +TKQESAVLLLESLLLGSLLW +G +CLFTLP    S LE VP V++E++ PG+  L +R
Sbjct: 250 MTKQESAVLLLESLLLGSLLWLMGTVCLFTLPPLPQSTLEPVPKVRMEKEGPGSAPLNER 309

Query: 264 EAGSKNYLLAVVKSRRCKASRRKMK 288
           E  +  Y  + ++SRRCKA+R +MK
Sbjct: 310 ENNNSIYSYSSLQSRRCKAARTRMK 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156712750|dbj|BAF76429.1| basic region leucine zipper protein [Nicotiana tabacum]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/295 (44%), Positives = 180/295 (61%), Gaps = 21/295 (7%)

Query: 12  DWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSEL---EPNQQSLDD 68
           D ++L   + +     +FS   P    +P I +IE +LMND+D    +   EP+ Q  DD
Sbjct: 16  DVDHLFHNILEDPADNLFSAHDPS---APSIQEIEQLLMNDDDIVGHVAVGEPDFQLADD 72

Query: 69  FFADVFVDQPSPASGAEVIELPTDKDQNGADE--SGNASPAEENVLDEPEVNNSDKNYND 126
           F +DV  D P  +  +     P+DK     D   S  +   +++   E    +  ++ + 
Sbjct: 73  FLSDVLADSPVQSDHS-----PSDKVIGFYDSKVSSGSEVDDDDKDKEKVSQSPIESKDG 127

Query: 127 TDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186
           +D  N+DDP+ KKR+RQLRNRDAAVRSRERKK+YV+DLE+KSRY ESEC++LG +L C L
Sbjct: 128 SDELNSDDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGLVLQCCL 187

Query: 187 AENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLES 246
           AENQ+LRFSLQ  +A GA +TKQESAVLLLESLLLGSLLWF+GI+CL  LP   W     
Sbjct: 188 AENQALRFSLQSSSANGACMTKQESAVLLLESLLLGSLLWFMGIICLLILPSQPW----L 243

Query: 247 VPLVQVEEKAPGNLVQREAGSKNY----LLAVVKSRRCKASRRKMKMTSHALSVL 297
           +P      +  G LV  + G+K       L+++  +RCKASR +MK   H L ++
Sbjct: 244 IPEENQRSRNHGLLVPIKGGNKTGRIFEFLSLMMGKRCKASRSRMKFNPHYLGIV 298

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60459369|gb|AAX20030.1| bZIP transcription factor protein [Capsicum annuum]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/280 (47%), Positives = 177/280 (63%), Gaps = 31/280 (11%)

Query: 27  EIFSNPSPDGSVSPWIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQP-----SPA 81
           ++F+   PD S +P   DIE +LM  NDD+ E + + Q   +F +DV VD P     SP+
Sbjct: 28  DLFTVHDPDPS-APNFQDIEQLLM--NDDDVEDQADTQFAAEFLSDVLVDSPAQSHQSPS 84

Query: 82  SGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRR 141
           +  E    P  K  +G+++            D+ +V++S    +D D  N DDPI KKR+
Sbjct: 85  AEEEAFGFPDSKVSSGSED------------DKDKVSHSP---SDADELNNDDPIDKKRK 129

Query: 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201
           RQLRNRDAAVRSRER+K+YV+DLE+KS+Y ESEC++LG +L C LAENQ+LRFSLQ  +A
Sbjct: 130 RQLRNRDAAVRSRERRKLYVRDLELKSKYFESECKRLGFVLQCCLAENQALRFSLQNSSA 189

Query: 202 YGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLV 261
            G S+TKQESAVLLLESLLLGSLLWFLGI CL  LP   W    S+P      + PG LV
Sbjct: 190 NGVSMTKQESAVLLLESLLLGSLLWFLGISCLLILPSQTW----SIPEENQGSRNPGLLV 245

Query: 262 QREAGSKN----YLLAVVKSRRCKASRRKMKMTSHALSVL 297
             + G K       L+ +  +RCKASR +MK   H+L ++
Sbjct: 246 PIKRGKKTSRSLAFLSFMMGKRCKASRSRMKFNPHSLGIV 285

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|170773912|gb|ACB32232.1| bZIP transcription factor protein [Solanum chacoense]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 164/274 (59%), Gaps = 34/274 (12%)

Query: 37  SVSPWIGDIESMLMNDNDDN--SELEPNQQSLDDFFADVFVDQP-----SPASGAEVIEL 89
           S S     IE +LMND+D    S  + + Q   DF +DV VD P     S +   + I  
Sbjct: 36  SSSQTFQQIEQLLMNDDDVGLVSFEDADPQFAADFLSDVLVDSPLHSDHSHSPAEQAIGF 95

Query: 90  PTDKDQNG--ADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRRRQLRNR 147
              K  +G  AD+  + SP++     + E+NN              DP+ KKR+RQLRNR
Sbjct: 96  TDSKVSSGSDADQDKHKSPSD----GDDELNNH-------------DPVDKKRKRQLRNR 138

Query: 148 DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207
           DAAVRSRERKK+YV+DLE+KSRY ESEC++LG +L C LAENQ+LRFSLQ  +A G S+T
Sbjct: 139 DAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLQNSSANGVSMT 198

Query: 208 KQESAVLLLESLLLGSLLWFLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGS 267
           KQESAVLLLESLLLGSLLWFLGI CL  LP   W    SVP      +  G L+  + G 
Sbjct: 199 KQESAVLLLESLLLGSLLWFLGITCLLILPSQTW----SVPEENQGSRNHGLLLPIKEGK 254

Query: 268 KN----YLLAVVKSRRCKASRRKMKMTSHALSVL 297
           K       L+ +  +RCKASR +MK   H+L V+
Sbjct: 255 KTSRILLFLSFMMGKRCKASRSRMKFNPHSLGVV 288

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745615|emb|CBI40780.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/183 (62%), Positives = 132/183 (72%), Gaps = 7/183 (3%)

Query: 123 NYN-DTDNDNAD-DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGR 180
            YN +  ND  D D  SKKRRRQLRNRDAAVRSRERKK YV+DLE+KSRYLESECR+LG 
Sbjct: 10  GYNGNAQNDGEDEDQASKKRRRQLRNRDAAVRSRERKKTYVRDLELKSRYLESECRRLGH 69

Query: 181 LLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCL-FTLPKP 239
           LL C  AENQ+LR  LQ   A+GAS+TKQESAVLL+ESLLLGSLLWFLGIMCL  +LP  
Sbjct: 70  LLQCCFAENQTLRLHLQNEKAFGASVTKQESAVLLMESLLLGSLLWFLGIMCLALSLPVQ 129

Query: 240 IWSHLESVPLVQVEEKAPGNLVQREAGSKNY----LLAVVKSRRCKASRRKMKMTSHALS 295
                E+VP+  VE+K   ++  R  GSK +    L + VKS+RCKAS+ KMK  S A  
Sbjct: 130 FQLSREAVPMGSVEDKGQKSVAPRGPGSKIFELWLLQSYVKSKRCKASKTKMKPGSLAHG 189

Query: 296 VLA 298
           VL 
Sbjct: 190 VLV 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455736|ref|XP_004145607.1| PREDICTED: bZIP transcription factor 60-like [Cucumis sativus]

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/259 (43%), Positives = 140/259 (54%), Gaps = 48/259 (18%)

Query: 15  NLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDN--SELEPNQQSLDDFFAD 72
           N   E  +     +  + SPD S+S WI  IE+ L+ND++DN  S   P+    D F AD
Sbjct: 17  NFFDEFPEVEFPVVQDSASPD-SISSWINHIENALLNDDEDNAPSLPTPSHDFCDSFLAD 75

Query: 73  VFVD---QPS---------------------------PAS------GAEVIELPTDKD-- 94
           + VD   QPS                           PA+      G+ V ++  D    
Sbjct: 76  LLVDSHEQPSVIDFDSNASDCGNDLTNSQKEDVHKVSPAAPTDDCCGSFVADVLADAHGR 135

Query: 95  QNGADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNA-----DDPISKKRRRQLRNRDA 149
            +G D   +      N  D+   NNS K   D  + +      DD +SKKRRRQLRNRDA
Sbjct: 136 SSGVDAVVDVLSNASNCGDDS--NNSQKEKVDAASIDESVGEDDDAVSKKRRRQLRNRDA 193

Query: 150 AVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQ 209
           AVRSRERKKMYVKDLEMKS++LE ECR+LGRLL C  AENQ+LRFSLQ G A G S+TKQ
Sbjct: 194 AVRSRERKKMYVKDLEMKSKFLEGECRRLGRLLQCYCAENQALRFSLQMGGASGVSMTKQ 253

Query: 210 ESAVLLLESLLLGSLLWFL 228
           ESAVLLLE+ + G     L
Sbjct: 254 ESAVLLLEADIAGGAFLLL 272

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724049|ref|NP_001237044.1| bZIP transcription factor bZIP68 [Glycine max] gi|113367186|gb|ABI34650.1| bZIP transcription factor bZIP68 [Glycine max]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 53/307 (17%)

Query: 4   DEFLEDEFDWNNLLTELTD-------------PSTAEIFSNPSPDGSVSPWIGDIESMLM 50
           +E L  + DW + L ++ +             P   +  S+P+ D    P + +IE+MLM
Sbjct: 5   EETLLTQIDWESFLDDIPELNVDDFLQDDNAVPVVTDNHSSPNDD----PVLSEIENMLM 60

Query: 51  NDNDDNSELEPNQQSLD----DFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNASP 106
              ++++ + P   S +      F ++ V++P                     + G  SP
Sbjct: 61  TQAENDAVVLPETPSSEAGYYKLFEEILVEEP---------------------KEGPVSP 99

Query: 107 AEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEM 166
             +  ++  E ++ DK    TD+  +D+P+SKK +RQLRNRDAAVRSRERKK+YVK+LEM
Sbjct: 100 PSK--IESEEGSDKDK----TDDAASDEPMSKKLKRQLRNRDAAVRSRERKKLYVKNLEM 153

Query: 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLW 226
           KSRYLE ECR+LG LL C  AEN +LR  LQ    YGAS+T QESAVLLLE LLLGSLLW
Sbjct: 154 KSRYLEGECRRLGHLLQCCYAENNALRLCLQLRGTYGASMTMQESAVLLLEPLLLGSLLW 213

Query: 227 FLGIMCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSK----NYLLAVVKSRRCKA 282
            +GI+C  +LP  +W     +P   +E+K    + Q+ + SK      + + +KSR+ +A
Sbjct: 214 CMGIICHLSLPLMLWVA-AVLPRENIEQKGLRRVTQKGSESKISECFQMQSFLKSRKSRA 272

Query: 283 SRRKMKM 289
           SR KMK 
Sbjct: 273 SRTKMKF 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2009874	295	BZIP60 "AT1G42990" [Arabidopsi	0.895	0.905	0.406	1.6e-40
TAIR|locus:1005716533	149	HYH "AT3G17609" [Arabidopsis t	0.365	0.731	0.286	2.6e-06
TAIR|locus:2148007	168	HY5 "ELONGATED HYPOCOTYL 5" [A	0.224	0.398	0.405	0.0001
TAIR|locus:2102564	620	BZIP49 "AT3G56660" [Arabidopsi	0.627	0.301	0.262	0.0002
TAIR|locus:2058510	721	BZIP17 "AT2G40950" [Arabidopsi	0.208	0.085	0.460	0.00053

TAIR|locus:2009874 BZIP60 "AT1G42990" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 121/298 (40%), Positives = 164/298 (55%)

Query:     1 MADDEFLEDEFDWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDDNSE-- 58
             + D++F  D FD + ++  L  P  AE F   SPD     WIG+IE+ LMND +   E  
Sbjct:    11 LGDEDFFFD-FDPSIVIDSL--P--AEDFLQSSPDS----WIGEIENQLMNDENHQEESF 61

Query:    59 LEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDK----DQNGA-DESGNASPAEENVLD 113
             +E +QQS+ DF AD+ VD P+  SG+  ++L  DK    D   A D+SG  +   + V++
Sbjct:    62 VELDQQSVSDFIADLLVDYPTSDSGS--VDLAADKVLTVDSPAAADDSGKEN--SDLVVE 117

Query:   114 EPEVXXXXXXXXXXXXXXXXXPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLES 173
             +                     ++KKRRR++RNRDAAVRSRERKK YV+DLE KS+YLE 
Sbjct:   118 KKSNDSGSEIHDDDDEEGDDDAVAKKRRRRVRNRDAAVRSRERKKEYVQDLEKKSKYLER 177

Query:   174 ECRKLGRLLHCVLAENQSLRFSLQKGNAYGASL-TKQESAVXXXXXXXXXXXXXXXXI-- 230
             EC +LGR+L C +AENQSLR+ LQKGN    ++ +KQESAV                +  
Sbjct:   178 ECLRLGRMLECFVAENQSLRYCLQKGNGNNTTMMSKQESAVLLLESLLLGSLLWLLGVNF 237

Query:   231 MCLFTLPKPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLLAVVKSRRCKASRRKMK 288
             +CLF    P  SH +   L++ E   P  LV    GS +       SRRCK SR +MK
Sbjct:   238 ICLF----PYMSHTKCC-LLRPE---PEKLVLNGLGSSSKPSYTGVSRRCKGSRPRMK 287

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEP;RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:1005716533 HYH "AT3G17609" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 33/115 (28%), Positives = 56/115 (48%)

Query:    82 SGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVXXXXXXXXXXXXXXXXXPISKKRR 141
             S  E++ +P   D   A  +   S + ++ ++ PE+                 P+ K+ R
Sbjct:    24 SDEELLMVP---DMEAAGSTCVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYR 80

Query:   142 ---RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193
                R LRNR +A ++RERKK+YV DLE ++  L++   +L   +  +  EN  LR
Sbjct:    81 SLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLEEKISTLTNENTMLR 135

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2148007 HY5 "ELONGATED HYPOCOTYL 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query:   137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196
             +K+ +R LRNR +A ++RERKK Y+ +LE + + LE++  +L   L  +  ENQ LR  L
Sbjct:    89 NKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 148

Query:   197 QK--GNAYG 203
             +   GN  G
Sbjct:   149 KNTTGNKRG 157

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009640 "photomorphogenesis" evidence=TAS

GO:0010224 "response to UV-B" evidence=IEP;IGI;IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0031539 "positive regulation of anthocyanin metabolic process" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

TAIR|locus:2102564 BZIP49 "AT3G56660" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 51/194 (26%), Positives = 80/194 (41%)

Query:     1 MADDEFLEDEFDWNNLLTELTDPSTAEIFSNPSPDGSVSPWIGDIESMLMNDNDD-NSEL 59
             ++D  FL D+ D      +L  PS  E F  P PD +     GD         D  N + 
Sbjct:    42 ISDLRFLIDDDD---SFDDLYFPSENESFCIP-PDATKREMSGDFTPASGISGDCVNEDT 97

Query:    60 EPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADESGNASPAEENVLDEPEVXX 119
             E N   +    +  + ++ SP   ++          +G D +   +  EE+  DE     
Sbjct:    98 EKNTNGVLISTSSCY-NRESPTD-SDFSGTSQSLSFSGQDSAKRKTEIEEDSSDESRRLG 155

Query:   120 XXXXXXXXXXXXXXXPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179
                               KK  R +RNR++A  SR+RKK YV++LE K + + S   +L 
Sbjct:   156 KDGFASVIKVGGEEDDEKKKNVRLVRNRESAHLSRQRKKHYVEELEDKVKNMHSTISELS 215

Query:   180 RLLHCVLAENQSLR 193
               +   +AEN +LR
Sbjct:   216 SKMSYFVAENVTLR 229

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2058510 BZIP17 "AT2G40950" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
 Identities = 29/63 (46%), Positives = 39/63 (61%)

Query:   138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197
             KKR R +RNR++A  SR+RKK YV++LE K R + S    L   +   +AEN +LR  L 
Sbjct:   230 KKRARLMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITDLNGKISYFMAENATLRQQLG 289

Query:   198 KGN 200
              GN
Sbjct:   290 -GN 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      298       265   0.00093  114 3  11 23  0.40    34
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  192 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.96u 0.16s 24.12t   Elapsed:  00:00:01
  Total cpu time:  23.96u 0.16s 24.12t   Elapsed:  00:00:01
  Start:  Thu May  9 19:22:10 2013   End:  Thu May  9 19:22:11 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7S0	BZI60_ARATH	No assigned EC number	0.4301	0.8489	0.8576	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_V1707 hypothetical protein (306 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
smart00338	65	smart00338, BRLZ, basic region leucin zipper	2e-08
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-06
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	1e-05
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	0.002

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 25/56 (44%), Positives = 38/56 (67%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193
           K+RRR+ RNR+AA RSRERKK  +++LE K   LE+E  +L + +  +  E + L+
Sbjct: 5   KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60

Length = 65

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESE 174
           + R R+ RN +AA RSRE+KK   ++LE + + LE E
Sbjct: 4   EYRDRRRRNNEAARRSREKKKQREEELEERVKELEEE 40

Length = 54

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL 178
           +   K+ RR+ +NR+AA RSR RKK Y+++LE K + LE+E + L
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTL 45

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL 178
            + R++ RNR+AA RSR RK   +K LE K   L SE   L
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDL 42

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.58
smart00338	65	BRLZ basic region leucin zipper.	99.48
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.44
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.37
KOG3584	348	consensus cAMP response element binding protein an	99.29
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.09
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	98.99
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.28
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	97.99
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.82
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.65
PRK10884	206	SH3 domain-containing protein; Provisional	97.02
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	96.94
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.07
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	94.93
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	93.28
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	90.94
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	88.49
PRK13169	110	DNA replication intiation control protein YabA; Re	88.1
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.19
PRK13922	276	rod shape-determining protein MreC; Provisional	85.75
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	85.73
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	84.55
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	84.11
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.17
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	81.57
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	81.23
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	80.53

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.58  E-value=1.5e-15  Score=150.32  Aligned_cols=105  Identities=27%  Similarity=0.315  Sum_probs=82.3

Q ss_pred             CCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccc
Q 022379          131 NADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQE  210 (298)
Q Consensus       131 ~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~qe  210 (298)
                      ..+++..||.||+|||++|||.||+|||+|++.||.||...+.||++|+++++.|..+|+.|.+||.+.++.......  
T Consensus       244 KaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an--  321 (472)
T KOG0709|consen  244 KAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN--  321 (472)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc--
Confidence            356788999999999999999999999999999999999999999999999999999999999999998876433222  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhc--CCCcccc
Q 022379          211 SAVLLLESLLLGSLLWFLGIMCLFT--LPKPIWS  242 (298)
Q Consensus       211 sAVlll~sl~L~sllw~L~i~cLl~--~P~~~~~  242 (298)
                      .+ ...+.|+++++    ..+|+++  +|.++..
T Consensus       322 ~s-~qt~tC~av~~----lS~~l~~s~lp~~~~~  350 (472)
T KOG0709|consen  322 KS-TQTSTCLAVLL----LSFCLLLSTLPCFSEF  350 (472)
T ss_pred             ch-hccchhHHHHH----HHHHHHHhhccccccc
Confidence            11 11234566633    3344444  6665544

>smart00338 BRLZ basic region leucin zipper

Probab=99.48  E-value=3.2e-13  Score=100.44  Aligned_cols=63  Identities=41%  Similarity=0.523  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ  197 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~  197 (298)
                      +..|+.+|+++||+||++||.||+.|+.+||.++..|+.+|..|..++..|..||..|++++.
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345889999999999999999999999999999999999999999999999999999999873

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.44  E-value=5e-13  Score=134.70  Aligned_cols=102  Identities=27%  Similarity=0.435  Sum_probs=74.0

Q ss_pred             CCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 022379          125 NDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG-----  199 (298)
Q Consensus       125 ~~~~~~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~-----  199 (298)
                      .-+...+.|.+..||+.||||||+||++||+|||+|+..||.+++.|.+||.+|       .+||..||+||...     
T Consensus       268 ~stp~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~L-------k~ENatLk~qL~~l~~En~  340 (655)
T KOG4343|consen  268 SSTPNVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQL-------KKENATLKRQLDELVSENQ  340 (655)
T ss_pred             CCCCCCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHhhcCc
Confidence            456678889999999999999999999999999999999999999888887766       46677777776543     


Q ss_pred             -----ccCCCcccccchhhHHHHHHHHHHHHHHHH-HHhhhc
Q 022379          200 -----NAYGASLTKQESAVLLLESLLLGSLLWFLG-IMCLFT  235 (298)
Q Consensus       200 -----~a~g~~~~~qesAVlll~sl~L~sllw~L~-i~cLl~  235 (298)
                           +..|.+..+.+-.|+.|  +++.|+++++| +|.+..
T Consensus       341 ~~kvpsp~~~~qKk~Rkvvaim--v~maFi~f~~~~p~ni~n  380 (655)
T KOG4343|consen  341 RLKVPSPKGRNQKKKRKVVAIM--VVMAFIIFNYGSPMNILN  380 (655)
T ss_pred             ccccCCCcccccccchhhhhHH--HHHHHHHHhccCcccccC
Confidence                 22334444445556644  45555555554 444433

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.37  E-value=4.3e-12  Score=94.27  Aligned_cols=62  Identities=45%  Similarity=0.528  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL  196 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL  196 (298)
                      +..|+.+|+++||+||++||.|||.|+..||.++..|+.+|..|...+..|..++..|+.++
T Consensus         2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45688999999999999999999999999999999999999999999999999999998765

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.29  E-value=4.9e-12  Score=120.30  Aligned_cols=59  Identities=32%  Similarity=0.432  Sum_probs=53.6

Q ss_pred             CCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          128 DNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL  186 (298)
Q Consensus       128 ~~~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~  186 (298)
                      ..-..|+...||+.|++|||+||++||+|||+||++||.||..||.+|+.|-+.|..|.
T Consensus       281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK  339 (348)
T KOG3584|consen  281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK  339 (348)
T ss_pred             CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999988877664

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.09  E-value=7e-10  Score=80.45  Aligned_cols=52  Identities=40%  Similarity=0.498  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE  188 (298)
Q Consensus       136 e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~E  188 (298)
                      +.++.+|. +||.||++||+|||+|+.+||.++..|+.+|..|..++..|..|
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45667777 99999999999999999999999999999999999998888765

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=98.99  E-value=1.7e-09  Score=100.97  Aligned_cols=68  Identities=31%  Similarity=0.355  Sum_probs=59.6

Q ss_pred             CCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 022379          130 DNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRK-------LGRLLHCVLAENQSLRFSLQ  197 (298)
Q Consensus       130 ~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~-------L~~ql~~L~~ENq~LRqqL~  197 (298)
                      -+.-..++|-+||++|||+|||.+|+|||+++.++|..+++|+.+|..       |+++.+.|..+|+.|++.|.
T Consensus        61 L~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le  135 (292)
T KOG4005|consen   61 LDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE  135 (292)
T ss_pred             hcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            466788899999999999999999999999999999999998887655       56777788899999988886

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.28  E-value=3.4e-06  Score=79.73  Aligned_cols=76  Identities=28%  Similarity=0.285  Sum_probs=67.1

Q ss_pred             CCCCChhHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 022379          130 DNADDPISKKRRR-QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS  205 (298)
Q Consensus       130 ~~~Dd~e~KR~RR-llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~  205 (298)
                      -+.++.+..|..| .+|||++|.+||+||-+++..||.+|+.+..+|..|...+..|...-.+++|++..+-++|+.
T Consensus       197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~  273 (279)
T KOG0837|consen  197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQ  273 (279)
T ss_pred             ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4566677766644 789999999999999999999999999999999999999999999999999999887766654

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=97.99  E-value=7.2e-08  Score=76.76  Aligned_cols=55  Identities=33%  Similarity=0.381  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAEN  189 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~EN  189 (298)
                      ...|..||.+|||.+|+.||.||+.++.+||..+..|..+...|..++..+..|.
T Consensus        27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4558889999999999999999999999999998877666555554444444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.82  E-value=0.00011  Score=70.39  Aligned_cols=64  Identities=25%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      ++.+.+|..++|+.||.|-|+|||+-.+.|+.++..|+.+|.+|+.++..+..|-+.|||-+..
T Consensus       224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e  287 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE  287 (294)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445567788899999999999999999999999999999999999999999999998754

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.65  E-value=0.00034  Score=65.69  Aligned_cols=67  Identities=21%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA  201 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a  201 (298)
                      +..+-..|..||-+||++||.+.|.-..+...|+..|+.||..|+.++.+|..|+..||+-+.....
T Consensus       191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~  257 (269)
T KOG3119|consen  191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK  257 (269)
T ss_pred             CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3334445667899999999999999999999999999999999999999999999999998876443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=97.02  E-value=0.01  Score=54.27  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccchhhHHHHHHHHHHHHHHHHHHhhhcC
Q 022379          157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTL  236 (298)
Q Consensus       157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~qesAVlll~sl~L~sllw~L~i~cLl~~  236 (298)
                      .+.-+..++..+..|+++|++|++++..++++|..|++++......           ..+.-.+.|..+-++|+++=+++
T Consensus       123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~-----------~~~~wf~~Gg~v~~~GlllGlil  191 (206)
T PRK10884        123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT-----------IIMQWFMYGGGVAGIGLLLGLLL  191 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHchHHHHHHHHHHHHh
Confidence            3444556666677788888888888888888888888887654432           33556677777778899999999


Q ss_pred             CCcccc
Q 022379          237 PKPIWS  242 (298)
Q Consensus       237 P~~~~~  242 (298)
                      |+|.++
T Consensus       192 p~l~pr  197 (206)
T PRK10884        192 PHLIPR  197 (206)
T ss_pred             cccccc
Confidence            998543

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=96.94  E-value=0.0058  Score=53.08  Aligned_cols=67  Identities=22%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379          136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAY  202 (298)
Q Consensus       136 e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~  202 (298)
                      -.|.+||-+|||=-|+-||-|+-..-.+||.+...|.+|..+|.+.+..+..|--.++..+......
T Consensus        51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~  117 (135)
T KOG4196|consen   51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS  117 (135)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4577789999999999999999987777777776666666666666666666666666655554433

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.07  E-value=0.0086  Score=62.48  Aligned_cols=58  Identities=26%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      ||+=|||.|||++|+||-.-|..||..+..|..+-.+|.+.=..+.++-..++++|..
T Consensus       493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~  550 (604)
T KOG3863|consen  493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSE  550 (604)
T ss_pred             ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777899999999999999999999999999888777765555555666666666643

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=94.93  E-value=0.0013  Score=64.80  Aligned_cols=75  Identities=23%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             CCCCCCChhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379          128 DNDNADDPISKKRRRQLRNRDAAVR---SRERKKMYVKDLEMKSRYLE-SECRKLGRLLHCVLAENQSLRFSLQKGNAY  202 (298)
Q Consensus       128 ~~~~~Dd~e~KR~RRllRNReSAqr---SR~RKK~YV~eLE~kvk~LE-~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~  202 (298)
                      .+.-...++.|+..|..+|+.+|.+   +|.|++.|...|..+++.|+ ..+..|..+++.|..|++.|...+..++..
T Consensus       144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~  222 (395)
T KOG1414|consen  144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPP  222 (395)
T ss_pred             CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCC
Confidence            4445567888999999999999999   99999999999999999999 999999999999999999999999876554

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=93.28  E-value=0.015  Score=57.35  Aligned_cols=62  Identities=37%  Similarity=0.439  Sum_probs=50.3

Q ss_pred             CChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 022379          133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG-RLLHCVLAENQSLRF  194 (298)
Q Consensus       133 Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~-~ql~~L~~ENq~LRq  194 (298)
                      .++.+++++-+.|||.||.++|+|||.++..|+.+...+..+|..|. ..++.|..+...+.+
T Consensus       280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~  342 (395)
T KOG1414|consen  280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQ  342 (395)
T ss_pred             CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcc
Confidence            34445556668899999999999999999999999999999999998 556666666665543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=90.94  E-value=0.74  Score=38.43  Aligned_cols=40  Identities=30%  Similarity=0.316  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhc
Q 022379          160 YVKDLEMKSRYLESECRKLGRLLHCVLAE-------NQSLRFSLQKG  199 (298)
Q Consensus       160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~E-------Nq~LRqqL~~~  199 (298)
                      .+..||.++..+..+...|+.++..|..|       |..||.+|...
T Consensus         9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~   55 (107)
T PF06156_consen    9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL   55 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777776666555       55555555543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=88.49  E-value=1.6  Score=41.13  Aligned_cols=47  Identities=21%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       154 R~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      |+|=|....+||.+++.+.+++..|+.++..|++.|..|=.++...+
T Consensus        88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq  134 (248)
T PF08172_consen   88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ  134 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556667999999999999999999999999999999988876643

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=88.10  E-value=1.6  Score=36.75  Aligned_cols=40  Identities=30%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Q 022379          160 YVKDLEMKSRYLESECRKLGRLLHCV-------LAENQSLRFSLQKG  199 (298)
Q Consensus       160 YV~eLE~kvk~LE~EN~~L~~ql~~L-------~~ENq~LRqqL~~~  199 (298)
                      .+..||..+..+..+...|+.++..+       ..||+.||..|...
T Consensus         9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677777777766666666666554       55555556666553

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.19  E-value=2.7  Score=32.87  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL  196 (298)
Q Consensus       161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL  196 (298)
                      +.-|..++..|..+|..|......|..||+.|++.-
T Consensus        20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~   55 (72)
T PF06005_consen   20 IALLQMENEELKEKNNELKEENEELKEENEQLKQER   55 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555666666666666543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=85.75  E-value=2.2  Score=39.47  Aligned_cols=44  Identities=27%  Similarity=0.182  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 022379          156 RKKMYVKDLEMKSRYLESECRKLGRLLH---CVLAENQSLRFSLQKG  199 (298)
Q Consensus       156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~---~L~~ENq~LRqqL~~~  199 (298)
                      ..-.+..+|.++.+.|++||.+|+.++.   .++.||.+||..|...
T Consensus        66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~  112 (276)
T PRK13922         66 ESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK  112 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3445567788888888888888877666   7899999999988653

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=85.73  E-value=2.4  Score=30.49  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      .||..+..|......|......|..||+.|+.++....
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~   39 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK   39 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888888999999999999999999999999987654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=84.55  E-value=3  Score=31.16  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          156 RKKMYVKDLEMKSRYLES----ECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       156 RKK~YV~eLE~kvk~LE~----EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      |+...+.+||.+++.-.+    ........+..|..||..|+.+|...+
T Consensus         1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r   49 (52)
T PF12808_consen    1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR   49 (52)
T ss_pred             CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356678888888775331    245678899999999999999997643

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=84.11  E-value=4.6  Score=31.36  Aligned_cols=39  Identities=23%  Similarity=0.037  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      .|+.|=..+..|..+|..|..++..+..|+..|..+...
T Consensus         8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~   46 (65)
T TIGR02449         8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ   46 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666778888888888888899998888877643

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.17  E-value=17  Score=31.87  Aligned_cols=63  Identities=24%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      +.......|++.+-.--.-+|+.+..|+.++..++.+.+.|...+..+..|+..|-+.|+..+
T Consensus        31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q   93 (140)
T PF10473_consen   31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ   93 (140)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456678888888888899999999999999999999999999999999999999998754

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=81.57  E-value=5.8  Score=33.15  Aligned_cols=30  Identities=20%  Similarity=0.133  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          158 KMYVKDLEMKSRYLESECRKLGRLLHCVLA  187 (298)
Q Consensus       158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~  187 (298)
                      |.++..|..+...|.-||..|++++..+..
T Consensus        28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   28 KKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445566666666666666666666655544

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR00219 mreC rod shape-determining protein MreC

Probab=81.23  E-value=4.1  Score=38.71  Aligned_cols=38  Identities=29%  Similarity=0.249  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 022379          162 KDLEMKSRYLESECRKLGRLLH----CVLAENQSLRFSLQKG  199 (298)
Q Consensus       162 ~eLE~kvk~LE~EN~~L~~ql~----~L~~ENq~LRqqL~~~  199 (298)
                      .+|+++.+.|..|+.+|+.++.    .++.||.+||+.|...
T Consensus        69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4566777777777666644333    3899999999988653

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=80.53  E-value=2.9  Score=32.14  Aligned_cols=32  Identities=16%  Similarity=0.110  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      +|..|..++.+|..++..|..||..||+....
T Consensus        15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p   46 (59)
T PF01166_consen   15 EVEVLKEQIAELEERNSQLEEENNLLKQNASP   46 (59)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            46677788888888888889999999987643

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	3e-12
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	7e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	7e-10
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-09
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	5e-08
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	4e-06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	5e-06
2wt7_B	90	Transcription factor MAFB; transcription, transcri	8e-06
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	9e-06
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	1e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196
           K+R+   RNR AA RSR+++K++V+ LE K+  L S   +L   +  +  E   L+  L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 53.2 bits (128), Expect = 7e-10
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197
           K+R R+ RN+ AA + R R++     L+ ++  LE E   L   +  +L E + L F L 
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 53.1 bits (128), Expect = 7e-10
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197
           K  R+++RNR AA +SR+RK   +  LE K + L+++  +L    + +  +   L+  + 
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 7/56 (12%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193
           K+  R ++NR+AA  SR +KK YVK LE +   LE++ + L       + E ++L+
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTL-------IEELKALK 49

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193
           KK ++  +N+ AA R R++K+   + L  + + LE +   L      +  E Q L+
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 104 ASPAEENVLDEPEVNNS--DKNYNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYV 161
            S    ++ DE  V  S  + N +       +    K+RRR L+NR  A   R ++    
Sbjct: 1   GSHMGTSLTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQK 60

Query: 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTK 208
           ++LE +   L+ E  KL      +  E  +LR   +    +  ++ +
Sbjct: 61  EELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFARTVAR 107

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192
           D    + + R+ RN  A  +SR++ KM   + + K   L +E  +L + +  +  E  +L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 193 RFSL 196
           R   
Sbjct: 70  RNLF 73

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 42.7 bits (100), Expect = 8e-06
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197
           K++RR L+NR  A   R ++      LE +   L  +  +L + +  +  E  + +   +
Sbjct: 27  KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86

Query: 198 K 198
           K
Sbjct: 87  K 87

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 41.7 bits (98), Expect = 9e-06
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 130 DNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESE 174
             + DP + KR R   N +AA RSR RK   +K LE K   L S+
Sbjct: 4   PESSDPAALKRAR---NTEAARRSRARKLQRMKQLEDKVEELLSK 45

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLE-------SECRKLGRLLHCVLAEN 189
               +R+ +NR A    R+RK+ ++K LE +   L+        E  +L + +  +  E 
Sbjct: 7   EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66

Query: 190 QSLR 193
           + L+
Sbjct: 67  RILK 70

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192
           D    + + R+ RN  A  +SR++ KM   + + K   L +E  +L + +  +  E  +L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 193 R 193
           R
Sbjct: 70  R 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 45/260 (17%), Positives = 80/260 (30%), Gaps = 45/260 (17%)

Query: 41  WIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVDQPSPASGAEVIELPTDKDQNGADE 100
           W+      L N N   + LE   Q L      +  +  S +  +  I+L           
Sbjct: 186 WLN-----LKNCNSPETVLEM-LQKL---LYQIDPNWTSRSDHSSNIKLRIH-SIQAELR 235

Query: 101 SGNASPAEEN---VLDEPEVNNSD--KNYN-------DT-DNDNADDPISKKRRR-QLRN 146
               S   EN   VL    V N+     +N        T      D   +       L +
Sbjct: 236 RLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 147 RDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE---NQSLRFSLQKGNAYG 203
               +   E K + +K L+ + + L  E          ++AE   +    +   K     
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 204 ASLTKQESAVLLLESLLLGSLLWFLGIMCLFTLPK--PI--------WSHL-ESVPLVQV 252
              T  ES++ +LE      +   L +      P    I        W  + +S  +V V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 253 EEKAPGNLVQREAGSKNYLL 272
            +    +LV+++       +
Sbjct: 409 NKLHKYSLVEKQPKESTISI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.49
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.44
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.44
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.42
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.2
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.08
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.78
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.77
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.77
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	98.52
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.24
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.18
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.18
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	90.89
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	90.54
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	86.95
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	86.15
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	85.36
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	85.03
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	84.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.23
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	82.33
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	81.12
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	80.43
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	80.32

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.49  E-value=1.3e-13  Score=101.44  Aligned_cols=60  Identities=35%  Similarity=0.395  Sum_probs=57.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ  197 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~  197 (298)
                      ||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|+..|++.|.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999999999999999999999999999873

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.44  E-value=5.8e-13  Score=98.84  Aligned_cols=62  Identities=31%  Similarity=0.435  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       137 ~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      +||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|...|+..|..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999999999988854

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.44  E-value=1.8e-13  Score=99.83  Aligned_cols=50  Identities=38%  Similarity=0.500  Sum_probs=45.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA  187 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~  187 (298)
                      |+++|+++||+||++||.|||+|+.+||.+|..|+.+|..|..++..|..
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999888776654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.42  E-value=2.7e-13  Score=100.07  Aligned_cols=61  Identities=28%  Similarity=0.363  Sum_probs=54.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      |+.+|..|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|+..|++.|..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~   61 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN   61 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999999999999998853

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.20  E-value=3.9e-11  Score=89.27  Aligned_cols=60  Identities=25%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ  197 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~  197 (298)
                      |+.+++.+||.||++||+|||++..+|+.++..|+.+|..|..++..|..|++.|++.|.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677888999999999999999999999999999999999999999999999999998774

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.08  E-value=2.1e-10  Score=85.65  Aligned_cols=48  Identities=33%  Similarity=0.274  Sum_probs=39.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          139 KRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL  186 (298)
Q Consensus       139 R~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~  186 (298)
                      ..++..+||+||++||+||++|+.+||.++..|+.+|..|..++..|.
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445699999999999999999999999999999998876555443

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.78  E-value=4.5e-08  Score=77.53  Aligned_cols=63  Identities=24%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      +-..|..||.+||++||+++|..-.+++.++..|+.+|..|+.+|..|..|...|+..|....
T Consensus        15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p   77 (87)
T 1hjb_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            455567799999999999999999999999999999999999999999999999999997643

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.77  E-value=2.3e-08  Score=77.70  Aligned_cols=61  Identities=25%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      +-..|..||.+||++||+++|....+++.++..|+.+|..|+.+|..|..|+..|++.|..
T Consensus        15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q   75 (78)
T 1gu4_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445577999999999999999999999999999999999999999999999999977643

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.77  E-value=3e-08  Score=75.77  Aligned_cols=57  Identities=23%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          140 RRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL  196 (298)
Q Consensus       140 ~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL  196 (298)
                      .+|+..||.|++.+|.||++|+.+||.++..|+..+..|......|..++..|...+
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El   66 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL   66 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999998777766544444444444444443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=98.52  E-value=1.7e-07  Score=65.56  Aligned_cols=40  Identities=33%  Similarity=0.445  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ  197 (298)
Q Consensus       158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~  197 (298)
                      |+|+.+||.+++.|+..|.+|.+++..|+.||+.|||-|.
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~   41 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK   41 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            7899999999999999999999999999999999999885

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.24  E-value=1e-05  Score=64.56  Aligned_cols=65  Identities=22%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG  199 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~  199 (298)
                      ...|..||-+|||.+|+.||.||.....+||..+..|..+...|...+..+..|-..+++.+..+
T Consensus        24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999999999999999999999999999999999888654

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.18  E-value=4.6e-08  Score=80.20  Aligned_cols=59  Identities=27%  Similarity=0.333  Sum_probs=45.9

Q ss_pred             ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379          134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG  199 (298)
Q Consensus       134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~  199 (298)
                      ....|.+||.+|||.+|+.||.||.+...+||.++.       .|+.+++.|..||..|+..+...
T Consensus        33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~-------~L~~e~e~L~~En~~l~~E~~~l   91 (107)
T 3a5t_A           33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKA-------ELQQEVEKLASENASMKLELDAL   91 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TTSSTTTTTTSTTSHHHHTTTSS
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            456689999999999999999999998888887776       45555555667777777666543

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.18  E-value=0.002  Score=51.63  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEM  166 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~  166 (298)
                      ...+..||..|||.||++||+||......|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            34577799999999999999999998877653

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=90.89  E-value=0.02  Score=45.85  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHH
Q 022379          135 PISKKRRRQLRNRDAAVRSRERKKM  159 (298)
Q Consensus       135 ~e~KR~RRllRNReSAqrSR~RKK~  159 (298)
                      .-.+..||.-|||.|||.||+||..
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3457778999999999999999864

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=90.54  E-value=1.5  Score=32.54  Aligned_cols=44  Identities=27%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      +..-|||.|+++||.|=|..++....-.              ..-..||..||--+..
T Consensus         4 ~kryknr~asrk~rakfkn~lqh~r~va--------------aaks~en~rlr~l~kq   47 (63)
T 2c9l_Y            4 IKRYKNRVAARKSRAKFKQLLQHYREVA--------------AAKSSENDRLRLLLKQ   47 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhcccchHHHHHHHH
Confidence            3456899999999999887655443322              2334566666655543

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=86.95  E-value=1.3  Score=31.83  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379          166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQK  198 (298)
Q Consensus       166 ~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~  198 (298)
                      ..+..|..||..|+.++..|..+|..|+.+|.+
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467789999999999999999999999999854

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=86.15  E-value=1.3  Score=33.31  Aligned_cols=31  Identities=10%  Similarity=0.096  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          170 YLESECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      .|+.++..|..++..|..+|..|+++|...+
T Consensus        51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455555666677777888999999997654

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=85.36  E-value=1.6  Score=35.63  Aligned_cols=38  Identities=26%  Similarity=0.180  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcc
Q 022379          163 DLEMKSRYLESECRK--------------LGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       163 eLE~kvk~LE~EN~~--------------L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      .||.++..++.+|.+              |...|..|..||+.|+++-...+
T Consensus        41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            356666666555543              44556778888888887765543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=85.03  E-value=3.6  Score=31.07  Aligned_cols=35  Identities=17%  Similarity=0.060  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR  193 (298)
Q Consensus       159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR  193 (298)
                      ..|.+||.....+..+|..|+.++..|..||..||
T Consensus        36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34677888888888888888888888888887764

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=84.83  E-value=3.8  Score=34.22  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379          160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG  199 (298)
Q Consensus       160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~  199 (298)
                      .+++|+.+++.|.++.+.....++.|..+|+.|..++...
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~  111 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence            3889999999999999999999999999999998888653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.23  E-value=6.4  Score=37.80  Aligned_cols=47  Identities=17%  Similarity=0.085  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379          153 SRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG  199 (298)
Q Consensus       153 SR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~  199 (298)
                      ..+.|++-.+.||.++..++.+....++++..+..||+.+++++...
T Consensus       531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444555677778888888888888889999999999998888664

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=82.33  E-value=2.1  Score=32.08  Aligned_cols=33  Identities=39%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRF  194 (298)
Q Consensus       162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq  194 (298)
                      +.|=.-...|..|...|+++++.|+.||..||.
T Consensus        30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            344444456777777888899999999999984

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=81.12  E-value=5.1  Score=31.29  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ  197 (298)
Q Consensus       167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~  197 (298)
                      +...|..++..++.....|..||+.|++...
T Consensus        35 kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~   65 (81)
T 2jee_A           35 KNNSLSQEVQNAQHQREELERENNHLKEQQN   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3333333333333333446667777776654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=80.43  E-value=2.9  Score=32.29  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379          158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN  200 (298)
Q Consensus       158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~  200 (298)
                      -.||..|+.+..       .+...+..|..+|+.|+++|..+.
T Consensus        51 ~~YI~~L~~~~~-------~l~~~~~~L~~~n~~L~~rl~~L~   86 (88)
T 1nkp_A           51 TAYILSVQAEEQ-------KLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345555555554       555555667788888888887654

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=80.32  E-value=2.2  Score=28.85  Aligned_cols=30  Identities=33%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379          160 YVKDLEMKSRYLESECRKLGRLLHCVLAEN  189 (298)
Q Consensus       160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~EN  189 (298)
                      ++..||.+|..|..++..|..++..|+..+
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll   31 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKEN   31 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            356788888888888888877776666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	91.91

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.91  E-value=0.035  Score=41.09  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Q 022379          137 SKKRRRQLRNRDAAVRSRERKKMYV  161 (298)
Q Consensus       137 ~KR~RRllRNReSAqrSR~RKK~YV  161 (298)
                      .+..||.=|||.|||.||+||-...
T Consensus        47 irDIRRRGKNKvAAqnCRKRKld~~   71 (74)
T d1sknp_          47 IRKIRRRGKNKVAARTCRQRRTDRH   71 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhhh
Confidence            3566889999999999999997654