Citrus Sinensis ID: 022382

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MHGCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
ccccccEEEEcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccc
cccccEEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHccccEHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccc
mhgcrrvtficgrAGVCALGAVLAKHAGDERLLDHYLTKfkeiklpsdlpnellygRVGFLWACSFLnkhmgkdtiSTAQMRAVVDEIIKAGRRlanrgrcplmyewhgkkywgaahGLAGIMHVLMDmelkpdeveDVKGTLRYMIknrfpsgnypssegsesdrlvhwchgapgVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRvgichgisgnTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEgkmhggdrpyslfegiggmTHLFldmiepsearfpayel
MHGCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKnrfpsgnypsSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
MHGCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
***CRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKN****************RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMI************
***CRRV*FICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
MHGCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSG***********RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
**GCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHGCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query298 2.2.26 [Sep-21-2011]
Q9JJK2450 LanC-like protein 2 OS=Mu yes no 0.959 0.635 0.470 7e-72
Q9NS86450 LanC-like protein 2 OS=Ho yes no 0.959 0.635 0.461 9e-71
O43813399 LanC-like protein 1 OS=Ho no no 0.963 0.719 0.416 1e-63
O89112399 LanC-like protein 1 OS=Mu no no 0.969 0.724 0.402 8e-63
Q9QX69399 LanC-like protein 1 OS=Ra no no 0.969 0.724 0.402 2e-61
Q90ZL2405 LanC-like protein 1 OS=Da no no 0.953 0.701 0.403 4e-60
Q9Y0Y7419 LanC-like protein 3 homol yes no 0.939 0.668 0.360 2e-52
Q29HZ1420 LanC-like protein 3 homol no no 0.953 0.676 0.355 2e-50
Q6ZV70420 LanC-like protein 3 OS=Ho no no 0.949 0.673 0.358 2e-47
Q8CD19420 LanC-like protein 3 OS=Mu no no 0.949 0.673 0.355 2e-47
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1 Back     alignment and function desciption
 Score =  270 bits (691), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 146/310 (47%), Positives = 198/310 (63%), Gaps = 24/310 (7%)

Query: 5   RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK-----LPSDLPNELLYGRVG 59
           RRVTF+CG AG  A+GAV+      E      +TK  ++        S+LP+ELLYGR G
Sbjct: 143 RRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYGRAG 202

Query: 60  FLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGR----CPLMYEWHGKKYWGA 115
           +L+A  +LN  +G  T+    ++ VV  II++G+ L+   R    CPL+Y+WH K+Y GA
Sbjct: 203 YLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGA 262

Query: 116 AHGLAGIMHVLMDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCH 172
           AHG+AGI ++LM  E K D+    E VK ++ Y+   +F SGNYPSS  +E+DRLVHWCH
Sbjct: 263 AHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCH 322

Query: 173 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYR 231
           GAPGV   L +A +VF E+++L+ A++  +V+W+RGLL++  GICHG SGN Y FLSLYR
Sbjct: 323 GAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIWQRGLLRKGYGICHGTSGNGYSFLSLYR 382

Query: 232 LTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHG---GDRPYSLFEGIGGMTHLFLDMIEP 288
           LT + +YLYRA  FA +  D           HG    DRPYSLFEG+ G  H   D++ P
Sbjct: 383 LTQDKKYLYRACKFAEWCLDYG--------AHGCRIPDRPYSLFEGMAGAVHFLSDILVP 434

Query: 289 SEARFPAYEL 298
             ARFPA+EL
Sbjct: 435 ETARFPAFEL 444
Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Mus musculus (taxid: 10090)
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1 Back     alignment and function description
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1 Back     alignment and function description
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2 Back     alignment and function description
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1 Back     alignment and function description
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1 Back     alignment and function description
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2 Back     alignment and function description
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
225461385 407 PREDICTED: lanC-like protein 2 [Vitis vi 0.983 0.719 0.894 1e-154
224128201 417 predicted protein [Populus trichocarpa] 0.979 0.700 0.852 1e-148
255587364 419 catalytic, putative [Ricinus communis] g 0.983 0.699 0.846 1e-148
146233385 443 abscisic acid ABA receptor [Populus tric 0.979 0.659 0.852 1e-146
449446947 412 PREDICTED: lanC-like protein 2-like [Cuc 0.986 0.713 0.826 1e-145
356544018 405 PREDICTED: lanC-like protein 2-like [Gly 0.983 0.723 0.822 1e-145
449530271293 PREDICTED: lanC-like protein 2-like, par 0.979 0.996 0.828 1e-144
225446932 412 PREDICTED: lanC-like protein 2 [Vitis vi 0.993 0.718 0.794 1e-137
147768321 412 hypothetical protein VITISV_008093 [Viti 0.993 0.718 0.791 1e-137
297853060 410 predicted protein [Arabidopsis lyrata su 0.983 0.714 0.771 1e-135
>gi|225461385|ref|XP_002284781.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] gi|302143043|emb|CBI20338.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/293 (89%), Positives = 276/293 (94%)

Query: 6   RVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACS 65
           RVTFICG+AGV A+GAV AKHAGDERLL  YLT+FKEIKLP DLPNELLYGR GFLWACS
Sbjct: 115 RVTFICGQAGVYAIGAVAAKHAGDERLLGRYLTQFKEIKLPKDLPNELLYGRGGFLWACS 174

Query: 66  FLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHV 125
           FLNKH+GKDTIS+A+MRA V EIIK+GR +A R RCPLMYEWHGKKYWGAAHGLAG+MHV
Sbjct: 175 FLNKHIGKDTISSARMRASVKEIIKSGREMAKRERCPLMYEWHGKKYWGAAHGLAGVMHV 234

Query: 126 LMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAA 185
           LM MELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGV LTL KAA
Sbjct: 235 LMHMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVALTLLKAA 294

Query: 186 EVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAF 245
           EVFG+KEFLQAAVDAGEVVW RGLLKRVGICHGISGNTYVFLSLYRLTGNVE+LYRAKAF
Sbjct: 295 EVFGDKEFLQAAVDAGEVVWNRGLLKRVGICHGISGNTYVFLSLYRLTGNVEFLYRAKAF 354

Query: 246 ACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 298
           ACFL DRAQ+LI+EGKMHGGDRPYSLFEGIGGMT+LFLDMIEPSEARFP YEL
Sbjct: 355 ACFLLDRAQRLISEGKMHGGDRPYSLFEGIGGMTYLFLDMIEPSEARFPGYEL 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128201|ref|XP_002329106.1| predicted protein [Populus trichocarpa] gi|222869775|gb|EEF06906.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255587364|ref|XP_002534246.1| catalytic, putative [Ricinus communis] gi|223525647|gb|EEF28136.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|146233385|gb|ABQ14360.1| abscisic acid ABA receptor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446947|ref|XP_004141231.1| PREDICTED: lanC-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356544018|ref|XP_003540453.1| PREDICTED: lanC-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449530271|ref|XP_004172119.1| PREDICTED: lanC-like protein 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|225446932|ref|XP_002263345.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] gi|297739117|emb|CBI28768.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147768321|emb|CAN64758.1| hypothetical protein VITISV_008093 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297853060|ref|XP_002894411.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340253|gb|EFH70670.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query298
TAIR|locus:2011466410 GPCR "G protein coupled recept 0.983 0.714 0.744 3.5e-123
TAIR|locus:2051449405 GCL2 "GCR2-like 2" [Arabidopsi 0.979 0.720 0.723 3.7e-119
TAIR|locus:2171800433 GCL1 "GCR2-like 1" [Arabidopsi 0.983 0.676 0.483 8.1e-76
MGI|MGI:1919085450 Lancl2 "LanC (bacterial lantib 0.969 0.642 0.475 4.4e-68
RGD|1310809450 Lancl2 "LanC lantibiotic synth 0.969 0.642 0.472 7.2e-68
UNIPROTKB|I3LIW1412 LANCL2 "Uncharacterized protei 0.963 0.696 0.475 2.4e-67
UNIPROTKB|Q9NS86450 LANCL2 "LanC-like protein 2" [ 0.969 0.642 0.465 6.5e-67
UNIPROTKB|A6QPG6433 LANCL2 "Uncharacterized protei 0.963 0.662 0.462 2.8e-66
UNIPROTKB|F1PEY8366 LANCL2 "Uncharacterized protei 0.963 0.784 0.466 4.5e-66
UNIPROTKB|E1C3R4455 LANCL2 "Uncharacterized protei 0.963 0.630 0.449 9.7e-64
TAIR|locus:2011466 GPCR "G protein coupled receptor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
 Identities = 218/293 (74%), Positives = 260/293 (88%)

Query:     6 RVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACS 65
             RVTFICG AGVCALGAV AK  GD++L D YL +F+ I+LPSDLP ELLYGR G+LWAC 
Sbjct:   118 RVTFICGYAGVCALGAVAAKCLGDDQLYDRYLARFRGIRLPSDLPYELLYGRAGYLWACL 177

Query:    66 FLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHV 125
             FLNKH+G+++IS+ +MR+VV+EI +AGR+L N+G CPLMYEWHGK+YWGAAHGLAGIM+V
Sbjct:   178 FLNKHIGQESISSERMRSVVEEIFRAGRQLGNKGTCPLMYEWHGKRYWGAAHGLAGIMNV 237

Query:   126 LMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAA 185
             LM  EL+PDE++DVKGTL YMI+NRFPSGNY SSEGS+SDRLVHWCHGAPGV LTL KAA
Sbjct:   238 LMHTELEPDEIKDVKGTLSYMIQNRFPSGNYLSSEGSKSDRLVHWCHGAPGVALTLVKAA 297

Query:   186 EVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAF 245
             +V+  KEF++AA++AGEVVW RGLLKRVGICHGISGNTYVFLSLYRLT N +YLYRAKAF
Sbjct:   298 QVYNTKEFVEAAMEAGEVVWSRGLLKRVGICHGISGNTYVFLSLYRLTRNPKYLYRAKAF 357

Query:   246 ACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 298
             A FL D+++KLI+EG+MHGGDRP+SLFEGIGGM ++ LDM +P++A FP YEL
Sbjct:   358 ASFLLDKSEKLISEGQMHGGDRPFSLFEGIGGMAYMLLDMNDPTQALFPGYEL 410
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0009787 "regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0010231 "maintenance of seed dormancy" evidence=IMP
GO:0010427 "abscisic acid binding" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=ISS
TAIR|locus:2051449 GCL2 "GCR2-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171800 GCL1 "GCR2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEY8 LANCL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027635001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (407 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
cd04794343 cd04794, euk_LANCL, eukaryotic Lanthionine synthet 1e-124
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 1e-100
cd04434343 cd04434, LanC_like, LanC-like proteins 6e-65
cd04792825 cd04792, LanM-like, LanM-like proteins 7e-18
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 7e-13
cd04793382 cd04793, LanC, LanC is the cyclase enzyme of the l 4e-10
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 4e-08
pfam05147 352 pfam05147, LANC_like, Lanthionine synthetase C-lik 3e-04
COG4403963 COG4403, LcnDR2, Lantibiotic modifying enzyme [Def 0.002
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information 
 Score =  359 bits (923), Expect = e-124
 Identities = 148/304 (48%), Positives = 204/304 (67%), Gaps = 16/304 (5%)

Query: 3   GCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-----KLPSDLPNELLYGR 57
             RR++F+CG AGV A+GA +  +  DE  +D +L+KF ++        S LP+ELLYGR
Sbjct: 44  DDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGR 103

Query: 58  VGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLA--NRGRCPLMYEWHGKKYWGA 115
            G+L+A  FLNK  G   I ++ ++++ D I+++GR  A   R  CPLMYEWHGK+Y GA
Sbjct: 104 AGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGA 163

Query: 116 AHGLAGIMHVLMD---MELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSES-DRLVHWC 171
           AHGLAGI+++L+      LKP     +K +L Y++  +FPSGN+PSS G+   DRLV WC
Sbjct: 164 AHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWC 223

Query: 172 HGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRV-GICHGISGNTYVFLSLY 230
           HGAPG+   LAKA  VF E+++L+AA+  GE++WKRGLLK+  G+CHGI+GN Y FL LY
Sbjct: 224 HGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLY 283

Query: 231 RLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE 290
           RLTG+++YLYRA  FA FL +   K  A       DRP+SLFEG+ G      D+++P +
Sbjct: 284 RLTGDLKYLYRACKFAEFLINYGFKNGA----RIPDRPFSLFEGLAGTACFLADLLQPRQ 339

Query: 291 ARFP 294
           A FP
Sbjct: 340 AGFP 343

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 298
KOG2787403 consensus Lanthionine synthetase C-like protein 1 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 100.0
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 100.0
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 100.0
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 100.0
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 100.0
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 100.0
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 99.97
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.97
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 99.96
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 99.96
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 99.94
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.93
KOG2787403 consensus Lanthionine synthetase C-like protein 1 99.83
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 99.82
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 97.42
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.72
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.66
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.41
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.21
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.03
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 95.51
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 95.24
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 94.98
COG1331667 Highly conserved protein containing a thioredoxin 94.92
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 94.63
COG1331 667 Highly conserved protein containing a thioredoxin 94.08
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 93.91
PLN02993763 lupeol synthase 93.48
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 91.76
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 90.82
PF03663 370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 90.66
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 89.78
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 89.17
PLN03012759 Camelliol C synthase 87.82
PTZ00470 522 glycoside hydrolase family 47 protein; Provisional 86.03
KOG2430 587 consensus Glycosyl hydrolase, family 47 [Carbohydr 86.01
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-50  Score=341.23  Aligned_cols=291  Identities=64%  Similarity=1.199  Sum_probs=265.3

Q ss_pred             CCcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhccC-CCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHH
Q 022382            4 CRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL-PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMR   82 (298)
Q Consensus         4 ~~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~   82 (298)
                      +..++|..|.+|++.+-+.+++.+++++..+..+..+.+++. .++-+++++.|.+|.+++++.+.+..+..++.++.+.
T Consensus       106 ~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~~~dlp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~  185 (403)
T KOG2787|consen  106 SRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLCSSDLPDELLYGRAGYLWACLFLNKYIGQETIPDDDIR  185 (403)
T ss_pred             cCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccCCccccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHH
Confidence            567899999999988888899999999999999988888744 6677899999999999999999999999999888999


Q ss_pred             HHHHHHHHhcHhhhhcCC--CCcceeecCccccccccchHHHHHHHhcCCCCCc---hHHHHHHHHHHHHHccCCCCCCC
Q 022382           83 AVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD---EVEDVKGTLRYMIKNRFPSGNYP  157 (298)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~---~~~~i~~~l~~~~~~~~~~g~w~  157 (298)
                      ++++.|+.+.+..+.+.+  +|++|+|.++.++|-|||++||++.|+......+   ..+.++.+++|++.+++++|++|
T Consensus       186 ~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP  265 (403)
T KOG2787|consen  186 SIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRFPSGNYP  265 (403)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccCCCCCCC
Confidence            999999999998887665  8999999999999999999999999999875544   47889999999999999999999


Q ss_pred             CCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCC-CccccchhhHHHHHHHHHHHhCCH
Q 022382          158 SSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNV  236 (298)
Q Consensus       158 ~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lCHG~aG~~~~l~~l~~~~~~~  236 (298)
                      .+..++.+..+.||||+||+++.+.++++++++++|.+.+.++.+.+|++|+.+. +++|||.+||.++++.+|+.|+|.
T Consensus       266 ~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~  345 (403)
T KOG2787|consen  266 SSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDM  345 (403)
T ss_pred             cccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcH
Confidence            8876677788999999999999999999999999999999999999999999766 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCCC
Q 022382          237 EYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL  298 (298)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~~~~~~~~~~  298 (298)
                      +|+.+|..+++.+++...+   .| ...++.++||+.|.+|..+.|++++.|++.+||.+|+
T Consensus       346 kYlyRA~kFae~lld~~~~---~g-~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El  403 (403)
T KOG2787|consen  346 KYLYRAKKFAEWLLDYGFS---HG-CRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL  403 (403)
T ss_pred             HHHHHHHHHHHHHHhhhhh---cc-CCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence            9999999999999998642   22 2235789999999999999999999999999999986

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
3e6u_A411 Crystal Structure Of Human Lancl1 Length = 411 1e-64
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 188/305 (61%), Gaps = 18/305 (5%)
Query: 5   RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWA 63
           R +TF+CG AG  A+ AVL     +E+  +  +T+   + K+    PNE+LYGR+G+++A
Sbjct: 114 RSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYA 173
Query: 64  CSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGL 119
             F+NK+ G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGL
Sbjct: 174 LLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGL 233
Query: 120 AGIMHVLMDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPG 176
           AGI + LM   L+  + +    VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPG
Sbjct: 234 AGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPG 293
Query: 177 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGN 235
           V   L +A +VF E+++L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT +
Sbjct: 294 VIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQD 353
Query: 236 VEYLYRAKAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARF 293
           ++YLYRA  FA  C  Y        E      D P+SLFEG+ G  +   D++ P++ARF
Sbjct: 354 MKYLYRACKFAEWCLEY-------GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARF 406
Query: 294 PAYEL 298
           PA+EL
Sbjct: 407 PAFEL 411

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query298
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 1e-94
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 4e-52
2g0d_A 409 Nisin biosynthesis protein NISC; alpha toroid, alp 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
 Score =  284 bits (728), Expect = 1e-94
 Identities = 125/303 (41%), Positives = 187/303 (61%), Gaps = 14/303 (4%)

Query: 5   RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWA 63
           R +TF+CG AG  A+ AVL     +E+  +  +T+   + K+    PNE+LYGR+G+++A
Sbjct: 114 RSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYA 173

Query: 64  CSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGL 119
             F+NK+ G + I  + ++ + + I+ +G  LA +     + PLMYEW+ + Y GAAHGL
Sbjct: 174 LLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGL 233

Query: 120 AGIMHVLMDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPG 176
           AGI + LM   L+  +      VK ++ Y+ + +FPSGNYP   G   D LVHWCHGAPG
Sbjct: 234 AGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPG 293

Query: 177 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGN 235
           V   L +A +VF E+++L  A    +V+W+ GLLK+  G+CHG +GN Y FL+LY LT +
Sbjct: 294 VIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQD 353

Query: 236 VEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPA 295
           ++YLYRA  FA +  +       E      D P+SLFEG+ G  +   D++ P++ARFPA
Sbjct: 354 MKYLYRACKFAEWCLEY-----GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPA 408

Query: 296 YEL 298
           +EL
Sbjct: 409 FEL 411
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 100.0
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 100.0
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 99.96
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.94
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 98.23
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 98.22
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.15
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.02
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.93
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.82
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.62
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.48
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.39
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.33
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.31
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 97.01
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 96.97
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 96.85
3k11_A445 Putative glycosyl hydrolase; structural genomics, 96.57
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 96.29
1nc5_A373 Hypothetical protein YTER; structural genomics, he 95.9
3k11_A445 Putative glycosyl hydrolase; structural genomics, 95.67
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 92.93
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 92.23
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 90.41
1nxc_A 478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 89.91
3e7j_A 749 Heparinase II protein; alpha and beta lyase, alpha 89.27
1fp3_A 402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 88.1
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 87.68
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 85.08
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 84.65
1x9d_A 538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 84.43
3h7l_A 586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 82.77
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 81.25
3a0o_A 776 Oligo alginate lyase; alpha/alpha ballel+anti-para 81.02
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-47  Score=351.12  Aligned_cols=289  Identities=43%  Similarity=0.830  Sum_probs=242.1

Q ss_pred             CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCCCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHH
Q 022382            5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRA   83 (298)
Q Consensus         5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~   83 (298)
                      +.+|++.|.+|+++++..+|+.+++++..+...+.+.+. ....+.+.|+++|.||++++++.+++.++++++.+..+.+
T Consensus       114 ~~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~~~~l~~~~~~~~~~~~dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~  193 (411)
T 3e6u_A          114 RSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQ  193 (411)
T ss_dssp             CCCCTTTSTHHHHHHHHHHHHHTTCHHHHHHHHHHHHGGGGGCTTCCSSTTTSHHHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred             cCCccccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccccCChhhhcCcHHHHHHHHHHHHHcCCccchHHHHHH
Confidence            568999999999999999999999987666655555443 2344456999999999999999999999999888666788


Q ss_pred             HHHHHHHhcHhhhhc----CCCCcceeecCccccccccchHHHHHHHhcCCCCC---chHHHHHHHHHHHHHccCCCCCC
Q 022382           84 VVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFPSGNY  156 (298)
Q Consensus        84 ~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~i~~~l~~~~~~~~~~g~w  156 (298)
                      +++.+++..+.....    ...|++|+|.+..++|++||+|||+++|+++++..   ...+.++++++++++...++|+|
T Consensus       194 i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~w  273 (411)
T 3e6u_A          194 ICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNY  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCHHHHHHTHHHHHHHHHHTCCTTSCC
T ss_pred             HHHHHHHHHHHHHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhccCCCC
Confidence            899888876543211    24677888988899999999999999999998653   25678999999999876677999


Q ss_pred             CCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CCCCccccchhhHHHHHHHHHHHhCC
Q 022382          157 PSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL-LKRVGICHGISGNTYVFLSLYRLTGN  235 (298)
Q Consensus       157 ~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lCHG~aG~~~~l~~l~~~~~~  235 (298)
                      |+...+..+..++||||++||++++..+++.++|+++.+.++++++.+|++++ .+++++|||.+|++++++++++.|++
T Consensus       274 p~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~lChG~aG~~~~ll~~~~~t~~  353 (411)
T 3e6u_A          274 PPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQD  353 (411)
T ss_dssp             CSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCSBTTCSCSTTSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCccCCCCceecChHHHHHHHHHHHHHhCC
Confidence            98654445568899999999999999999999999999999999999999886 46799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCCC
Q 022382          236 VEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL  298 (298)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~~~~~~~~~~  298 (298)
                      ++|+++|.++++.+.++..     +.....+.++|||+|.|||+++|+++.+|++++||+||+
T Consensus       354 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~~  411 (411)
T 3e6u_A          354 MKYLYRACKFAEWCLEYGE-----HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL  411 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTTS-----SCCCCCSSTTSTTTSHHHHHHHHHHHTSGGGCCCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHhcc-----ccCCCCCCCChhhccHHHHHHHHHHHcCCCcccCCCCCC
Confidence            9999999988877654321     112223567899999999999999999999999999996
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 298
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 5e-44
d2g0da1 409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 0.002
d2d5ja1 377 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola 5e-04
d2d5ja1377 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrola 8e-04
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  152 bits (385), Expect = 5e-44
 Identities = 47/329 (14%), Positives = 84/329 (25%), Gaps = 50/329 (15%)

Query: 5   RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKE--------------IKLPSDLP 50
             +      +G   +   +     D+    + L                   ++  +   
Sbjct: 74  YGLLTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPD 133

Query: 51  NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRC--------P 102
            +++ G  G L     +N     D          +  + K    L +             
Sbjct: 134 YDVIEGLSGILSYLLLINDEQYDDLKILII--NFLSNLTKENNGLISLYIKSENQMSQSE 191

Query: 103 LMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEV----EDVKGTLRYMIKNRF------- 151
                 G    G AHGLAG+  +L    +K          ++  +    K          
Sbjct: 192 SEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFL 251

Query: 152 -------PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVV 204
                              S     WC+G PG++L             F+  A    E  
Sbjct: 252 WKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESA 311

Query: 205 WKRGL-LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMH 263
            +R L +    ICHG SG   +     RL    ++    + F        ++       +
Sbjct: 312 MQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE-------Y 364

Query: 264 GGDRPYSLFEGIGGMTHLFLDMIEPSEAR 292
           G +      EGI G   +           
Sbjct: 365 GDESGTGFLEGISGCILVLSKFEYSINFT 393
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377 Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Length = 377 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query298
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 100.0
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 99.92
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.5
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.47
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 96.54
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 96.43
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 94.75
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 92.46
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 90.91
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 89.42
d2afaa1 411 Putative NAG isomerase YihS {Salmonella typhimuriu 87.56
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 85.99
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 83.97
d1nxca_ 467 Class I alpha-1;2-mannosidase, catalytic domain {M 83.83
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 83.17
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.3e-38  Score=290.95  Aligned_cols=281  Identities=17%  Similarity=0.161  Sum_probs=197.5

Q ss_pred             CCCcceeecCchHHHHHHHHHHHHcCChHHH---H----HHHHHHhh----cc--CCCCCCcccccchHHHHHHHHHHhh
Q 022382            3 GCRRVTFICGRAGVCALGAVLAKHAGDERLL---D----HYLTKFKE----IK--LPSDLPNELLYGRVGFLWACSFLNK   69 (298)
Q Consensus         3 ~~~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~---~----~~~~~~~~----~~--~~~~~~~d~~~G~aGil~~l~~l~~   69 (298)
                      +..+.|+|+|.+|+++++.++++..  +++.   +    .+.+.+++    ..  ..+..++|+++|.+|++++|+.+++
T Consensus        75 ~~~~~glf~G~~Gi~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~  152 (409)
T d2g0da1          75 GLLTGSLYSGAAGIALSILHLREDD--EKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLIND  152 (409)
T ss_dssp             CCSCCCTTTSHHHHHHHHGGGTTTC--HHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCC
T ss_pred             CCCCcceeCCHHHHHHHHHHHHhcc--hhhhHHHHHHHHHHHHHHHHHHHHhhccccCCcccchhcccHHHHHHHHHhcc
Confidence            3457899999999998877655432  2221   1    11112221    11  1122348999999999999998765


Q ss_pred             hhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCCcce-----------eecCccccccccchHHHHHHHhcCCCC----Cc
Q 022382           70 HMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMY-----------EWHGKKYWGAAHGLAGIMHVLMDMELK----PD  134 (298)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~G~aHG~aGi~~~L~~~~~~----~~  134 (298)
                      ...+     +....+.+.+.+..........+.+..           .+.+..++|||||.|||+++|++++..    +.
T Consensus       153 ~~~~-----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~  227 (409)
T d2g0da1         153 EQYD-----DLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEA  227 (409)
T ss_dssp             GGGH-----HHHHHHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHH
T ss_pred             cccc-----HHHHHHHHHHHHHHHhcccccccccccccccccchhcccCCCCCccchhhhHHHHHHHHHHHHHhcCCCcc
Confidence            4432     344555555555432211100111000           012345789999999999999988642    33


Q ss_pred             hHHHHHHHHHHHHHccCC---CCCCCCCCC-----------CCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHH
Q 022382          135 EVEDVKGTLRYMIKNRFP---SGNYPSSEG-----------SESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDA  200 (298)
Q Consensus       135 ~~~~i~~~l~~~~~~~~~---~g~w~~~~~-----------~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~  200 (298)
                      ..+.++++++++.+.++.   ...||+...           ...+.+++||||+|||+++++.+.+.++|+++.+.++++
T Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~  307 (409)
T d2g0da1         228 SLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKI  307 (409)
T ss_dssp             HHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCcCcccccccccccccCcccccccCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            567788888888765552   345886321           123447899999999999999999999999999999999


Q ss_pred             HHHHHHhcCC-CCCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHH
Q 022382          201 GEVVWKRGLL-KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMT  279 (298)
Q Consensus       201 ~~~~~~~~~~-~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~  279 (298)
                      ++.+++++.. .++|+|||.+|++.+++.+++.++++++.+.+.++.........       ..+...++|||+|.|||+
T Consensus       308 ~~~~~~~~~~~~~~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~gl~~G~aGi~  380 (409)
T d2g0da1         308 LESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILE-------EYGDESGTGFLEGISGCI  380 (409)
T ss_dssp             HHHHHHHCTTCCSCCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHH-------SCCSTTCSSTTTSHHHHH
T ss_pred             HHHHHHhccCCCCCcccCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-------cCCCCCCCchhccHHHHH
Confidence            9999998874 57999999999999999999999999998887776655444322       123567899999999999


Q ss_pred             HHHHHccCCCCC-C----CCCCC
Q 022382          280 HLFLDMIEPSEA-R----FPAYE  297 (298)
Q Consensus       280 ~~Ll~~~~~~~~-~----~~~~~  297 (298)
                      ++|+++.+|.+. .    |++||
T Consensus       381 ~~Ll~~~~~~~~~~W~~~~L~~~  403 (409)
T d2g0da1         381 LVLSKFEYSINFTYWRQALLLFD  403 (409)
T ss_dssp             HHHHHHHSCCCSSCGGGGGTCCT
T ss_pred             HHHHHhcCCCCCCCcchhhcccc
Confidence            999999998763 3    77776
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure