Citrus Sinensis ID: 022387

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHEEEccccccccEEHHHHHHcccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccccEEEEEccccccccEEEEccccccEEEEEccccccEEEEEEcccccccEEEccccHHHHEEEcccccEEEEEccccEEEEEEEcccccEEEccc
Coil and Loop (DISEMBL)
maalsaysspwpeptpdpnpnpnpnsntscgvssedqtDQLQSlesfssmpqdepdsfspsipesnpnyqmplpspaestsssppptllhisfnqdhgcfaagtdhgfriyncdpfrEIFRRDFERGGGIGVVEMLFRCNILalvgggpdpqyplnkvmiwddhqsrcigeLSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIanpkglcavsqgVGSLVLvcpglqkgqvRVEHYASKRTKFIMAHDSRIACFAltqdgqllatsstkGTLVRIFNTLdgtllqegc
Flexible Loop (DISEMBL)
MAAlsaysspwpeptpdpnpnpnPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGElsfrsevrsvklrrdriivvlEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLatsstkgtlvRIFNTldgtllqegc
Low Complexity Region (SEG)
MAALSAYsspwpeptpdpnpnpnpnsntsCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMplpspaestsssppptllHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC
Disordered region (IsUnstruct)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL*****
Disordered Region (DISOPRED)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC
Disordered Region (DISEMBL)
******************NPNPNPNSN**************QSLE***************SIPESNPNYQMP************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC
Disordered Region (DISPRO)
*AALSAYSSPWPEPTPDP******************************************************************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ**C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q640T2	344	WD repeat domain phosphoi	yes	no	0.697	0.604	0.509	7e-54
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.697	0.604	0.509	2e-53
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.697	0.604	0.504	2e-53
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.697	0.604	0.509	3e-53
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.697	0.604	0.509	3e-53
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.697	0.604	0.504	5e-53
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.697	0.604	0.495	8e-52
Q9Y484	360	WD repeat domain phosphoi	no	no	0.664	0.55	0.402	1e-37
Q91VM3	360	WD repeat domain phosphoi	no	no	0.671	0.555	0.4	3e-37
Q5QA93	360	SVP1-like protein 2 OS=Pi	N/A	no	0.744	0.616	0.379	3e-37

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  211 bits (536), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Xenopus tropicalis (taxid: 8364)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Pongo abelii (taxid: 9601)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   A+  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Gallus gallus (taxid: 9031)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Homo sapiens (taxid: 9606)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 142/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Mus musculus (taxid: 10090)

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  207 bits (528), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 141/212 (66%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +  VEMLFRCN LALVGG
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VSYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AL   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

Xenopus laevis (taxid: 8355)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  204 bits (518), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 138/212 (65%), Gaps = 4/212 (1%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  + +F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  P    G V++   A+  K    I AH+  + C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            L   G  +AT+S KGTL+RIF+T  G L+QE
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQE 223

Danio rerio (taxid: 7955)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 127/211 (60%), Gaps = 13/211 (6%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVGGG  
Sbjct: 12  LRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSS 71

Query: 151 PQYPLNKVMIWD------DHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204
           P++    V+IWD      D + + + E +F   V SV++R D+I++VL+ +I+VY+F D 
Sbjct: 72  PKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDN 131

Query: 205 -KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAH 257
            + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         I AH
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAH 191

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNT 288
            S IAC +L Q G ++A++S KGTL+R+F+T
Sbjct: 192 QSDIACVSLNQPGTVVASASQKGTLIRLFDT 222

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 15/215 (6%)

Query: 87  TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG 146
           T LH  FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVG
Sbjct: 10  TSLH--FNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVG 67

Query: 147 GGPDPQYPLNKVMIWD------DHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
           GG  P++    V+IWD      D + + + E +F   V +V++R D+I++VL  +I+VY+
Sbjct: 68  GGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYS 127

Query: 201 FADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------F 253
           F D  + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         
Sbjct: 128 FPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFT 187

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288
           I AH S +AC +L Q G ++A++S KGTL+R+F+T
Sbjct: 188 INAHQSDVACVSLNQPGTVVASASQKGTLIRLFDT 222

Mus musculus (taxid: 10090)

>sp|Q5QA93|HSV2_PICAN SVP1-like protein 2 OS=Pichia angusta GN=HSV2 PE=3 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 71  MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI 130
           M    P ES  +  P  +L+ +FNQD  CFA   + GF++YN DP     +R F   GG+
Sbjct: 1   MNTHRPIESVRAHEP-AVLNAAFNQDQTCFAVCHESGFQVYNTDPMELRMKRTFSTNGGV 59

Query: 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV 190
           G++ ML R N +ALVGGG  P++P+NK+ IWDD + +    L F S + +V L R  I+V
Sbjct: 60  GLIAMLHRTNYVALVGGGRQPRFPVNKLCIWDDLKKKPSIMLEFMSPILNVLLSRILIVV 119

Query: 191 VLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-----E 244
           VL+ K+ ++ F    KLL Q ET  N  G+  +S    +  L  PG   GQ+++      
Sbjct: 120 VLKNKVLIHAFESKPKLLAQHETYDNEAGVAELSVNEQTSFLAFPGRAIGQIQLVDVSPA 179

Query: 245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           H        I AH SRI C A++  G L+A++S  GT++RI +T   +L
Sbjct: 180 HRDRNLISIIKAHKSRIQCLAISNSGLLIASASQTGTIIRIHDTAKCSL 228

Involved in mitochondrial or peroxisomal functions and amino acid signaling pathways.

Pichia angusta (taxid: 870730)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
240255692	396	transducin/WD40 domain-containing protei	0.936	0.704	0.729	1e-120
7362757	432	putative protein [Arabidopsis thaliana]	0.936	0.645	0.729	1e-120
240255690	425	transducin/WD40 domain-containing protei	0.936	0.656	0.729	1e-120
225436703	439	PREDICTED: WD repeat domain phosphoinosi	0.963	0.653	0.726	1e-119
147775635	428	hypothetical protein VITISV_032850 [Viti	0.963	0.670	0.726	1e-119
297821186	432	AT3g62770/F26K9_200 [Arabidopsis lyrata	0.862	0.594	0.776	1e-118
255582144	447	WD-repeat protein, putative [Ricinus com	0.845	0.563	0.819	1e-112
297824875	413	predicted protein [Arabidopsis lyrata su	0.802	0.578	0.812	1e-111
225450815	425	PREDICTED: WD repeat domain phosphoinosi	0.781	0.548	0.820	1e-109
449436529	420	PREDICTED: WD repeat domain phosphoinosi	0.939	0.666	0.695	1e-109

>gi|240255692|ref|NP_001030918.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332646869|gb|AEE80390.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 246/303 (81%), Gaps = 24/303 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQE 296
            QE
Sbjct: 284 RQE 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7362757|emb|CAB83127.1| putative protein [Arabidopsis thaliana]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 246/303 (81%), Gaps = 24/303 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQE 296
            QE
Sbjct: 284 RQE 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255690|ref|NP_567132.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|16323362|gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|332646868|gb|AEE80389.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/303 (72%), Positives = 246/303 (81%), Gaps = 24/303 (7%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQE 296
            QE
Sbjct: 284 RQE 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436703|ref|XP_002263976.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/307 (72%), Positives = 248/307 (80%), Gaps = 20/307 (6%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQE 296
           DGT LQE
Sbjct: 292 DGTRLQE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775635|emb|CAN67189.1| hypothetical protein VITISV_032850 [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/307 (72%), Positives = 248/307 (80%), Gaps = 20/307 (6%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQE 296
           DGT LQE
Sbjct: 292 DGTRLQE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821186|ref|XP_002878476.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata] gi|297324314|gb|EFH54735.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/264 (77%), Positives = 228/264 (86%), Gaps = 7/264 (2%)

Query: 33  SSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHIS 92
           S  D+ D+  SL+SFSSM      S +   P  N N Q P+  P  +   +PPP++LH+S
Sbjct: 30  SHRDRGDETDSLDSFSSM------SLNSDEPNQNSN-QSPISPPTPNLPVTPPPSVLHLS 82

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ
Sbjct: 83  FNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQ 142

Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           YP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIET
Sbjct: 143 YPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIET 202

Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL 272
           IANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG L
Sbjct: 203 IANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHL 262

Query: 273 LATSSTKGTLVRIFNTLDGTLLQE 296
           LAT+S+KGTLVR+FNT+DGTL QE
Sbjct: 263 LATASSKGTLVRVFNTVDGTLRQE 286

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582144|ref|XP_002531866.1| WD-repeat protein, putative [Ricinus communis] gi|223528474|gb|EEF30503.1| WD-repeat protein, putative [Ricinus communis]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/266 (81%), Positives = 230/266 (86%), Gaps = 14/266 (5%)

Query: 40  QLQSLESFSS-MPQDE--PDSFSPSIPESNPNYQMPLPSPAESTSSSPPP----TLLHIS 92
           Q QS ++ SS MPQD   PD   P     NPNY       A+S+++SPP     +LLH+S
Sbjct: 46  QSQSYDTLSSIMPQDHCIPDHSDP-----NPNYHHHARPAADSSTTSPPSSPPISLLHLS 100

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPD 150
           FNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+RGGG G  VVEMLFRCNILALVGGG D
Sbjct: 101 FNQDFGCFAAGTDHGFRIYNCDPFREIFRRDFDRGGGGGIGVVEMLFRCNILALVGGGSD 160

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
           PQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI
Sbjct: 161 PQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 220

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           ETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG
Sbjct: 221 ETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 280

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
           QLLAT+STKGTLVR+FNT DG+LLQE
Sbjct: 281 QLLATASTKGTLVRVFNTADGSLLQE 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824875|ref|XP_002880320.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326159|gb|EFH56579.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/240 (81%), Positives = 215/240 (89%), Gaps = 1/240 (0%)

Query: 57  SFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF 116
           SFS + P S+ +    L S   S+ ++P P+LLHISFNQD+GCFA GTD GFRI+NCDPF
Sbjct: 22  SFSSTAPHSDDDSDRQLDSN-PSSPATPLPSLLHISFNQDYGCFAVGTDCGFRIFNCDPF 80

Query: 117 REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
            EIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ+P  KVMIWDDHQ+RCIGELSFRS
Sbjct: 81  SEIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQHPPCKVMIWDDHQNRCIGELSFRS 140

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           +VRS++LRRDRIIVVLEQKIFVYNFADLKL+HQIETIANPKGLCAVSQG GSLVLVCPGL
Sbjct: 141 DVRSLRLRRDRIIVVLEQKIFVYNFADLKLMHQIETIANPKGLCAVSQGAGSLVLVCPGL 200

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           QKGQVRVEHYASKRTKFIMAHDSRIACFALTQD  LLAT+S KGTL+R+FNT DGTLLQE
Sbjct: 201 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDAHLLATASFKGTLLRVFNTADGTLLQE 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450815|ref|XP_002283982.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/240 (82%), Positives = 211/240 (87%), Gaps = 7/240 (2%)

Query: 62  IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR 121
           +PES  N    +P P+   +  P PTLLH+SFNQDHGCF+AGTDHGFRIYNCDPFREIFR
Sbjct: 47  LPESEYN-DDSVP-PSADPTRFPAPTLLHLSFNQDHGCFSAGTDHGFRIYNCDPFREIFR 104

Query: 122 RDF-----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
           RDF       G GIGVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ+RCIGELSFRS
Sbjct: 105 RDFCGDDGGSGTGIGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQTRCIGELSFRS 164

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           EV+SV+LRRDRI+ +L QKIFVYNFADLKLLHQIETIANPKGLC VSQ  GS+VLVCPGL
Sbjct: 165 EVKSVRLRRDRIVAILLQKIFVYNFADLKLLHQIETIANPKGLCEVSQLSGSMVLVCPGL 224

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            KGQVRVEHY SKRTKFIMAHDSRIACFALTQDG+LLATSS+KGTLVRIFNTLDGTLLQE
Sbjct: 225 LKGQVRVEHYNSKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRIFNTLDGTLLQE 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436529|ref|XP_004136045.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus] gi|449533312|ref|XP_004173620.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/296 (69%), Positives = 222/296 (75%), Gaps = 16/296 (5%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSP 60
           M  LSA+ SP        +      +            D   S E F           S 
Sbjct: 1   METLSAFPSPPWPNPNPNSNPSPNPNPNPNPNPPSAVADS-SSSERFD----------SD 49

Query: 61  SIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF 120
           S+   +P    P   P  S      P+LLH+SFNQDHGCFAAGTD GFRIYNCDPFREIF
Sbjct: 50  SVSSVDPTGLSPAVEPPAS-----QPSLLHLSFNQDHGCFAAGTDRGFRIYNCDPFREIF 104

Query: 121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS 180
           RRDF+RGGG+GVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQSRCIGELSFRS VR 
Sbjct: 105 RRDFDRGGGVGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSAVRG 164

Query: 181 VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
           V+L+RDRIIV+LEQK+FVYNFADLKLLHQIETIANPKGLCAVSQ   SLVLVCPGLQKGQ
Sbjct: 165 VRLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQ 224

Query: 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           VRVEHYAS+RTKFIMAHDSRIACFALT +GQLLAT+STKGTLVRIFNT DG LLQE
Sbjct: 225 VRVEHYASRRTKFIMAHDSRIACFALTTNGQLLATASTKGTLVRIFNTFDGNLLQE 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.855	0.6	0.759	5.3e-104
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.694	0.452	0.787	6.7e-88
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.687	0.524	0.679	9e-77
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.687	0.491	0.684	3.9e-76
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.687	0.521	0.679	1.7e-75
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.677	0.577	0.585	4.7e-64
UNIPROTKB|Q22UW9	351	TTHERM_00577340 "WD repeat dom	0.687	0.584	0.526	7.5e-57
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.691	0.539	0.490	7.8e-55
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.684	0.545	0.516	1.9e-51
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.691	0.598	0.504	1.1e-50

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 202/266 (75%), Positives = 220/266 (82%)

Query:    33 SSEDQTDQLQSLESFSSMP--QDEPDSFSPSIPESNPNYQMXXXXXXXXXXXXXXXXXXH 90
             S  D+ D+  SL+SFSSM    DEP+  S   P S P   +                  H
Sbjct:    30 SHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVL---------H 80

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +SFNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPD
Sbjct:    81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPD 140

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
             PQYP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQI
Sbjct:   141 PQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQI 200

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ETIANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG
Sbjct:   201 ETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDG 260

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+S+KGTLVRIFNT+DGTL QE
Sbjct:   261 HLLATASSKGTLVRIFNTVDGTLRQE 286

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 170/216 (78%), Positives = 184/216 (85%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---------GGGIGVVEMLFRCN 140
             HISFNQD+GCFAAGT  GFRIYNCDPFREIFRRD            GGGIGVVEMLFRCN
Sbjct:   101 HISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCN 160

Query:   141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
             ILALVGGG  P YP NKVMIWDDHQSRCIGELSFRS VR V+LRRDRIIVVLE KIFVYN
Sbjct:   161 ILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYN 220

Query:   201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260
             FADLKL+HQIET  NPKGLCAVSQ  GS+VLVCPG QKGQVRVEHY +++TKFI AH SR
Sbjct:   221 FADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHTSR 280

Query:   261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
             +ACFAL+QDG+L+AT+STKGTLVRI+N  +G LLQE
Sbjct:   281 VACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQE 316

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 140/206 (67%), Positives = 170/206 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    39 VSWNQDYSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 97

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP NKV+IWDDHQ RCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    98 SQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 157

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             E +ANP+GLC +S  + + VL CPG+++G+VRVEH+     + I AHDS IAC  LT DG
Sbjct:   158 ENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDG 217

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+STKGTL+RIFNT+DGT LQE
Sbjct:   218 LLLATASTKGTLIRIFNTMDGTRLQE 243

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 141/206 (68%), Positives = 169/206 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD GCFAAGT +GFRI+NCDPF+E FRRD  + GG G+VEMLFRCNILALVGGG +
Sbjct:    50 VSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDL-KSGGFGIVEMLFRCNILALVGGGSN 108

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               YP NKVMIWDDH+S CIGE +FRS+VR+VKL +D I++VLE+KI+VYNF DLKLLHQI
Sbjct:   109 AHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQI 168

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET +NPKGLC +S    + VL CPG+ +G VRVEH+  K T+ I AHDS I+C ALT DG
Sbjct:   169 ETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDG 228

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+S KGTL+RIFNT+DGT LQE
Sbjct:   229 LLLATASMKGTLIRIFNTMDGTRLQE 254

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 140/206 (67%), Positives = 167/206 (81%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             + +NQD  CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    35 VCWNQDSSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 93

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    94 SQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 153

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET ANP+GLC +S    + VL CPGL +G++RVEH+     + I AHDS IAC  LT DG
Sbjct:   154 ETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDG 213

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+STKGTL+RIFNT+DGT LQE
Sbjct:   214 LLLATASTKGTLIRIFNTMDGTRLQE 239

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 120/205 (58%), Positives = 162/205 (79%)

Query:    92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151
             +FNQD+ CFA GT+ GF I++CDPF+E F R F+  GG+G+VEMLFRCNILA+VGGG  P
Sbjct:    17 NFNQDYSCFACGTEKGFLIFSCDPFKERFGRVFD--GGVGIVEMLFRCNILAIVGGGKKP 74

Query:   152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIE 211
             +Y  N+VMIWDD+Q++CI +L F+SEV++VKLRRDRI+VVLE K+++YNF+DL+L+HQ+E
Sbjct:    75 RYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVHQLE 134

Query:   212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271
             T  NPKG+CA+  G  + VL CPGL+ G V VE Y  K+T+ I AH+  ++  AL +DG 
Sbjct:   135 TTNNPKGICAICPGTVN-VLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNKDGT 193

Query:   272 LLATSSTKGTLVRIFNTLDGTLLQE 296
             LLAT+S KGTL+RIF+T  G  ++E
Sbjct:   194 LLATASEKGTLIRIFDTATGEKVKE 218

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q22UW9 TTHERM_00577340 "WD repeat domain phosphoinositide-interacting protein 3" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 109/207 (52%), Positives = 149/207 (71%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             ++SFNQD+GCF+ GT+ GF IYN +PF++I+ R    GGGIG+VEML+RCNI+ALVGGG 
Sbjct:     9 YLSFNQDYGCFSCGTEDGFNIYNTEPFKQIYSRSV--GGGIGIVEMLYRCNIIALVGGGK 66

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
              P++P  KV +WDD Q + I E++FRSEV++VKL+ DR+IVVLE +I+V+NFADLKL+  
Sbjct:    67 SPKFPPTKVQLWDDSQLKRIAEMNFRSEVKAVKLKADRVIVVLETRIYVHNFADLKLIDT 126

Query:   210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269
             I+T  NP GLC+V+     ++L  P  + G+V V  Y+  +T  I AH S + C      
Sbjct:   127 IDTCPNPLGLCSVNTEGDEIILATPHKEVGEVNVHLYSDNKTISIRAHQSALNCLQTNPR 186

Query:   270 GQLLATSSTKGTLVRIFNTLDGTLLQE 296
             G  LAT+S KGT++RI+NT  G LLQE
Sbjct:   187 GTKLATASQKGTIIRIYNTKKGELLQE 213

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 101/206 (49%), Positives = 140/206 (67%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CF A T +GFR+++C PF E  RR F   GGIG+ EMLFR +I  L G   +
Sbjct:    20 VSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 79

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              ++P   + +WDD+  R I + +F SE+R+V+L +D  +VVLE+ I VY F DL+L +Q 
Sbjct:    80 TEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLRLFYQA 139

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
              T++NP GLC +S    + V  CPG  KGQV +EH+  K T+FI AHDS ++C  +  DG
Sbjct:   140 RTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSPLSCMTMALDG 199

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQE 296
              LLAT+S +GTL+RIFNT DGT +QE
Sbjct:   200 TLLATASVRGTLIRIFNTRDGTCVQE 225

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 108/209 (51%), Positives = 139/209 (66%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148
             +++NQ    F  GT+HGF +Y+C P   + I R   E   G  V EMLF  N+ A VG G
Sbjct:    36 VAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHE--SGFKVAEMLFLSNLFAFVGNG 93

Query:   149 -PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL 207
               + +YP NKV +WDD+++ C+ EL+F+SEV +VKL R+ ++VVL+Q I+VY F +LK+ 
Sbjct:    94 YNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKVD 153

Query:   208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT 267
               IET+ NPKGLC V+      VL CPG   GQV+V        KFI AHDS IAC  LT
Sbjct:   154 RVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLT 213

Query:   268 QDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
              DG LLAT+STKGTL+RIFN +DGTLLQE
Sbjct:   214 LDGSLLATASTKGTLIRIFNAVDGTLLQE 242

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 106/210 (50%), Positives = 140/210 (66%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             +  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGGG 
Sbjct:    15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGGGK 73

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLH 208
              P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   LH
Sbjct:    74 KPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLH 133

Query:   209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFAL 266
               ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C AL
Sbjct:   134 VFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIAL 193

Query:   267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
                G  +AT+S KGTL+RIF+T  G L+QE
Sbjct:   194 NLQGTRIATASEKGTLIRIFDTSSGHLIQE 223

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5MNZ6	WIPI3_HUMAN	No assigned EC number	0.5094	0.6979	0.6046	yes	no
Q640T2	WIPI3_XENTR	No assigned EC number	0.5094	0.6979	0.6046	yes	no
Q9CR39	WIPI3_MOUSE	No assigned EC number	0.5094	0.6979	0.6046	yes	no
Q5ZL16	WIPI3_CHICK	No assigned EC number	0.5047	0.6979	0.6046	yes	no
Q5R7W0	WIPI3_PONAB	No assigned EC number	0.5094	0.6979	0.6046	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AtATG18a	AtATG18a; Required for autophagosome formation during nutrient deprivation and senescence. (425 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATATG8E	AtATG8e; microtubule binding; Involved in autophagy. Under nutrient starvation the protein loca [...] (122 aa)							•		0.786
	AT3G61710	autophagy protein Apg6 family; autophagy protein Apg6 family; FUNCTIONS IN- molecular_function [...] (517 aa)							•		0.784
	APG7	APG7 (AUTOPHAGY 7); APG8 activating enzyme; Component of autophagy conjugation pathway. Require [...] (697 aa)				•			•		0.752
	ATG18F	AtATG18f; AtATG18f; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- response to starvati [...] (763 aa)							•		0.677
	ATG3	ATG3; ATG3; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- autophagy; LOCATED IN- cellu [...] (313 aa)				•			•		0.673
	ATG8F	ATG8F (autophagy 8f); microtubule binding; autophagy 8f (ATG8F); FUNCTIONS IN- microtubule bind [...] (121 aa)							•		0.573
	VTI1B	VTI1B; SNARE binding / receptor/ soluble NSF attachment protein; member of VTI1 Gene Family. No [...] (222 aa)							•		0.524
	COS1	COS1 (COI1 SUPPRESSOR1); 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazin [...] (227 aa)							•		0.434
	APG9	APG9 (autophagy 9); Involved in autophagy, the process of vacuolar bulk degradation of cytoplas [...] (866 aa)							•		0.429
	AT5G04170	calcium-binding EF hand family protein; calcium-binding EF hand family protein; FUNCTIONS IN- c [...] (354 aa)				•					0.416

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 35/205 (17%), Positives = 80/205 (39%), Gaps = 18/205 (8%)

Query: 89  LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
             ++F+ D    ++ +     ++++ +  + +            V    F  +   +   
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA---FSPDGTFVASS 153

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD 203
             D       + +WD    +C+  L+    EV SV    D   ++    +  I +++ + 
Sbjct: 154 SQD-----GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208

Query: 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIA 262
            K L  +    +  G+ +V+      +L   G + G +RV    +      +  H + + 
Sbjct: 209 GKCLGTLR--GHENGVNSVAFSPDGYLLAS-GSEDGTIRVWDLRTGECVQTLSGHTNSVT 265

Query: 263 CFALTQDGQLLATSSTKGTLVRIFN 287
             A + DG+ LA+ S  GT +RI++
Sbjct: 266 SLAWSPDGKRLASGSADGT-IRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.98
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.94
KOG0286	343	consensus G-protein beta subunit [General function	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0286	343	consensus G-protein beta subunit [General function	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.91
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
PTZ00421	493	coronin; Provisional	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0266	456	consensus WD40 repeat-containing protein [General	99.9
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.9
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
PTZ00420	568	coronin; Provisional	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0645	312	consensus WD40 repeat protein [General function pr	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.88
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.88
KOG0645	312	consensus WD40 repeat protein [General function pr	99.88
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.87
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.87
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.87
KOG0289	506	consensus mRNA splicing factor [General function p	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.86
KOG0296	399	consensus Angio-associated migratory cell protein	99.86
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.85
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.85
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.85
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.85
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.85
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.84
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.84
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.84
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.84
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.83
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.83
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.83
KOG0646	476	consensus WD40 repeat protein [General function pr	99.82
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.82
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.81
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG0643	327	consensus Translation initiation factor 3, subunit	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.8
PTZ00421	493	coronin; Provisional	99.8
KOG0289	506	consensus mRNA splicing factor [General function p	99.8
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.8
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.79
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.79
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.79
PTZ00420	568	coronin; Provisional	99.78
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.78
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.77
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.77
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.76
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.76
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.76
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.76
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG0267	825	consensus Microtubule severing protein katanin p80	99.75
KOG0639	705	consensus Transducin-like enhancer of split protei	99.75
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.75
KOG1273	405	consensus WD40 repeat protein [General function pr	99.75
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.74
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.74
KOG0296	399	consensus Angio-associated migratory cell protein	99.73
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.71
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.71
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.71
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.71
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.7
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.69
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.69
KOG1539	910	consensus WD repeat protein [General function pred	99.69
KOG0267	825	consensus Microtubule severing protein katanin p80	99.68
KOG0646	476	consensus WD40 repeat protein [General function pr	99.68
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.68
KOG1274	933	consensus WD40 repeat protein [General function pr	99.67
KOG2055	514	consensus WD40 repeat protein [General function pr	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.65
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.65
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.65
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.65
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.64
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.64
KOG2048	691	consensus WD40 repeat protein [General function pr	99.63
KOG0641	350	consensus WD40 repeat protein [General function pr	99.63
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.63
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.63
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.63
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.63
KOG1539	910	consensus WD repeat protein [General function pred	99.62
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.62
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.62
KOG1274	933	consensus WD40 repeat protein [General function pr	99.62
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.61
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.59
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.59
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.58
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.57
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.57
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.57
KOG2096	420	consensus WD40 repeat protein [General function pr	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.56
KOG4328	498	consensus WD40 protein [Function unknown]	99.55
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.54
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.53
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.53
KOG2048	691	consensus WD40 repeat protein [General function pr	99.52
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.52
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.51
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.51
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.5
KOG0639	705	consensus Transducin-like enhancer of split protei	99.5
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.49
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.48
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.48
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.47
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.47
KOG2055	514	consensus WD40 repeat protein [General function pr	99.47
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.46
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.45
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.44
COG2319	466	FOG: WD40 repeat [General function prediction only	99.44
PRK01742	429	tolB translocation protein TolB; Provisional	99.43
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.43
PRK11028	330	6-phosphogluconolactonase; Provisional	99.42
COG2319	466	FOG: WD40 repeat [General function prediction only	99.41
KOG1188	376	consensus WD40 repeat protein [General function pr	99.41
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.39
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.38
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.38
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.36
KOG4227	609	consensus WD40 repeat protein [General function pr	99.36
KOG0649	325	consensus WD40 repeat protein [General function pr	99.34
KOG1963	792	consensus WD40 repeat protein [General function pr	99.34
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.33
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.32
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.32
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.32
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.32
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.32
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.32
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.31
KOG1273	405	consensus WD40 repeat protein [General function pr	99.31
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.3
KOG1188	376	consensus WD40 repeat protein [General function pr	99.29
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.29
KOG1963	792	consensus WD40 repeat protein [General function pr	99.28
KOG0649	325	consensus WD40 repeat protein [General function pr	99.26
KOG1310	758	consensus WD40 repeat protein [General function pr	99.26
PRK03629	429	tolB translocation protein TolB; Provisional	99.25
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.25
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.24
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.23
KOG2321	703	consensus WD40 repeat protein [General function pr	99.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.22
PRK04922	433	tolB translocation protein TolB; Provisional	99.21
PRK05137	435	tolB translocation protein TolB; Provisional	99.17
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.16
PRK02889	427	tolB translocation protein TolB; Provisional	99.14
KOG4328	498	consensus WD40 protein [Function unknown]	99.14
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.13
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.09
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.09
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.08
KOG1334	559	consensus WD40 repeat protein [General function pr	99.08
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.08
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.04
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.03
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.03
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.03
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.02
PRK01742	429	tolB translocation protein TolB; Provisional	99.01
PRK00178	430	tolB translocation protein TolB; Provisional	99.01
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.99
KOG4547	541	consensus WD40 repeat-containing protein [General	98.99
PRK04922	433	tolB translocation protein TolB; Provisional	98.98
PRK04792	448	tolB translocation protein TolB; Provisional	98.98
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.96
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.96
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.94
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.93
PRK03629	429	tolB translocation protein TolB; Provisional	98.92
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.91
KOG2321	703	consensus WD40 repeat protein [General function pr	98.9
PRK02889	427	tolB translocation protein TolB; Provisional	98.9
PRK05137	435	tolB translocation protein TolB; Provisional	98.89
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.82
KOG2139	445	consensus WD40 repeat protein [General function pr	98.82
KOG2315	566	consensus Predicted translation initiation factor	98.82
PRK01029	428	tolB translocation protein TolB; Provisional	98.81
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.78
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.72
KOG4547	541	consensus WD40 repeat-containing protein [General	98.71
KOG2139	445	consensus WD40 repeat protein [General function pr	98.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.67
KOG2314	698	consensus Translation initiation factor 3, subunit	98.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.66
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.63
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.61
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.6
KOG4227	609	consensus WD40 repeat protein [General function pr	98.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.57
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.55
PRK04792	448	tolB translocation protein TolB; Provisional	98.55
PRK00178	430	tolB translocation protein TolB; Provisional	98.53
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.53
PRK04043	419	tolB translocation protein TolB; Provisional	98.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.5
COG4946	668	Uncharacterized protein related to the periplasmic	98.49
KOG1310	758	consensus WD40 repeat protein [General function pr	98.49
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.4
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.37
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.33
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.33
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.3
COG4946	668	Uncharacterized protein related to the periplasmic	98.29
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.28
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.27
PRK01029	428	tolB translocation protein TolB; Provisional	98.26
KOG2695	425	consensus WD40 repeat protein [General function pr	98.23
KOG2315	566	consensus Predicted translation initiation factor	98.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.19
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.11
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.99
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.97
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.96
KOG2695	425	consensus WD40 repeat protein [General function pr	97.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.91
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.89
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.89
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.84
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.81
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.77
PRK04043	419	tolB translocation protein TolB; Provisional	97.77
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.76
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.72
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.58
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.56
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.56
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.55
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.5
KOG2395	644	consensus Protein involved in vacuole import and d	97.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.46
PRK02888	635	nitrous-oxide reductase; Validated	97.42
KOG1334	559	consensus WD40 repeat protein [General function pr	97.41
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.36
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.28
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.13
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.08
KOG3621	726	consensus WD40 repeat-containing protein [General	97.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.94
KOG2314	698	consensus Translation initiation factor 3, subunit	96.93
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.86
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.72
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.67
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.66
PRK02888	635	nitrous-oxide reductase; Validated	96.64
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.33
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.32
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.19
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.17
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.14
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.03
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.01
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.0
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.85
COG3391	381	Uncharacterized conserved protein [Function unknow	95.83
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.49
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.47
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.1
KOG2444	238	consensus WD40 repeat protein [General function pr	95.02
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.01
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	94.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.44
PHA02713	557	hypothetical protein; Provisional	94.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.7
COG5167	776	VID27 Protein involved in vacuole import and degra	93.69
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.57
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.33
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	92.99
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.76
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.72
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.67
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.22
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.78
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.74
KOG1008	783	consensus Uncharacterized conserved protein, conta	91.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.51
KOG2395	644	consensus Protein involved in vacuole import and d	91.44
PHA03098	534	kelch-like protein; Provisional	91.21
PRK13616	591	lipoprotein LpqB; Provisional	90.94
KOG3621	726	consensus WD40 repeat-containing protein [General	90.89
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.7
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.28
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.69
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.48
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	89.34
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	88.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.94
COG3391	381	Uncharacterized conserved protein [Function unknow	87.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.13
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.77
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	86.38
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.08
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.04
PHA02790	480	Kelch-like protein; Provisional	85.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.26
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	85.2
PRK10115	686	protease 2; Provisional	85.15
PHA02713	557	hypothetical protein; Provisional	84.8
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.38
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.39
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	82.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.24
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.0
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	81.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	80.87

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.98  E-value=1.5e-30  Score=221.54  Aligned_cols=211  Identities=61%  Similarity=1.009  Sum_probs=195.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ....++|++|...+|+|.++|+|||++++.++...+.+ +.++..++++.+..+++++++|+..+.+..++|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            45669999999999999999999999999887666666 35669999999999999999999888889999999999999


Q ss_pred             cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (298)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~  245 (298)
                      .++.++.+.++|.+|.+.+++++++..++|++|... +.+.++.+.+..+|.+.|++++..+..+||++|..-|.|+|-+
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            999999999999999999999999999999999996 8899999999999999999999999999999999999999988


Q ss_pred             cCCcce---EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       246 ~~~~~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      +.....   ..+.+|.+.|.||+++-+|.++||+|..||+|||||..+|++++|++
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R  221 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR  221 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence            765544   68999999999999999999999999999999999999999999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.97  E-value=9e-29  Score=214.27  Aligned_cols=205  Identities=37%  Similarity=0.663  Sum_probs=187.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ..+..+.|++|+..|+.|+.+|.++|++++....+...   .+++.++++.|...++|+++-.     +.+.+++.+.++
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~---~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD---TEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK   77 (391)
T ss_pred             cceeeeeeccceeEEEccCCCceeEEecCchHHhhccc---CCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence            36778889999999999999999999999988755554   5789999999999999999964     347899999999


Q ss_pred             CcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEEecCC-CceEEE
Q 022387          166 SRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRV  243 (298)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~-dg~v~i  243 (298)
                      +..+.++.|..+|.+|.++.++++|+..+.|+|||++++++++++... .++.++|+++++..+.++|+.++. .|.|.+
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            999999999999999999999999999999999999999999999885 788999999999999999998765 589999


Q ss_pred             EEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          244 EHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       244 ~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      ||..+ .+...+.+|++++.||+|+++|.+|||+|+.|++||||.+.+|++++||+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            88765 45668999999999999999999999999999999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=218.10  Aligned_cols=214  Identities=18%  Similarity=0.197  Sum_probs=172.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC-C---------
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-D---------  150 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------  150 (298)
                      .+|..+|.|++|+|+|+.||+|+.|. +|+||+++....++.+- |.+-+.++.|++++..+|..+-.. .         
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            57888999999999999999999855 89999999887777665 677788888888877666433110 0         


Q ss_pred             -------------------------------CCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE--CCeE
Q 022387          151 -------------------------------PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL--EQKI  196 (298)
Q Consensus       151 -------------------------------~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~--~~~I  196 (298)
                                                     ....||+|+|||+..++++..+..+ .+|+|+.|..+.++...  |++|
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence                                           0113788888888888888777766 48999999876666554  4799


Q ss_pred             EEEEcCCCeEEEEEeccCCCcceEEEEeC---------CC-------------------------CeEEEEecCCCceEE
Q 022387          197 FVYNFADLKLLHQIETIANPKGLCAVSQG---------VG-------------------------SLVLVCPGLQKGQVR  242 (298)
Q Consensus       197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~---------~d-------------------------~~~la~sGs~dg~v~  242 (298)
                      ++|+..++++++++++|.+.+..++++.+         +.                         +..++ +|++|+++.
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV-SgsDd~tlf  349 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV-SGSDDFTLF  349 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE-EecCCceEE
Confidence            99999999999999999999888877722         11                         23466 699999999


Q ss_pred             EEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          243 VEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       243 i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      +|+-..  +++..+.+|..-|+.+.||||++++|++|.|+. ||+||-++|+.+.+|+
T Consensus       350 lW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfR  406 (480)
T KOG0271|consen  350 LWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFR  406 (480)
T ss_pred             EecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhh
Confidence            998542  356688999999999999999999999999999 9999999999887664

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=8.1e-28  Score=198.80  Aligned_cols=217  Identities=17%  Similarity=0.201  Sum_probs=172.8

Q ss_pred             CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCce--EEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      ++......+.+-....+.|+.+.+.||+++||+|+...||+||+.+...  +...+. |.+.+..+.+..++..+++.+ 
T Consensus        25 Wqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgs-  102 (311)
T KOG0315|consen   25 WQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG-HTKNVTAVGFQCDGRWMYTGS-  102 (311)
T ss_pred             eehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec-cCCceEEEEEeecCeEEEecC-
Confidence            3444444444445556799999999999999999999999999987654  444444 567788888888888888766 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCC--------------------
Q 022387          148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADL--------------------  204 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~--------------------  204 (298)
                            .||++||||++...+-+.+++..+|.++..|++  .|+++. ++.|++||+.+.                    
T Consensus       103 ------eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~  176 (311)
T KOG0315|consen  103 ------EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM  176 (311)
T ss_pred             ------CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence                  789999999999888889999999999999875  444444 378888888532                    


Q ss_pred             -----------------------------eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEe
Q 022387          205 -----------------------------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKF  253 (298)
Q Consensus       205 -----------------------------~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~  253 (298)
                                                   +++.+|+.|...+..|.+|++  +.+||+ ++.|.+++||+.+.-  ....
T Consensus       177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k~lat-~ssdktv~iwn~~~~~kle~~  253 (311)
T KOG0315|consen  177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VKYLAT-CSSDKTVKIWNTDDFFKLELV  253 (311)
T ss_pred             CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--CcEEEe-ecCCceEEEEecCCceeeEEE
Confidence                                         233445556566666777665  499995 999999999998764  3458


Q ss_pred             ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       254 ~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      +.+|..-|+.++||-||.||+|||.|++ +|+|+++.|+.+++|.
T Consensus       254 l~gh~rWvWdc~FS~dg~YlvTassd~~-~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  254 LTGHQRWVWDCAFSADGEYLVTASSDHT-ARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             eecCCceEEeeeeccCccEEEecCCCCc-eeecccccCceeeecC
Confidence            8999999999999999999999999998 9999999999998874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.6e-29  Score=217.30  Aligned_cols=217  Identities=14%  Similarity=0.065  Sum_probs=183.2

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCC--CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEE
Q 022387           69 YQMPLPSPAESTSSSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV  145 (298)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~d--g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (298)
                      .++.+.....-+.++|...|.++.|+|.  +..||+++.|| +++|..+....+...+. |...+.-+.+.+++..++++
T Consensus       201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG~~L~Ta  279 (459)
T KOG0272|consen  201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSGKFLGTA  279 (459)
T ss_pred             EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCCceeeec
Confidence            4555555556667899999999999997  56899999866 88999988665555554 67788888888999998888


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCA  221 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~  221 (298)
                      +       .|.+-++||++++..+...+.++ .|.+++|++++-++++.   ..=+|||++++.++..+.+|..++..++
T Consensus       280 s-------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~  352 (459)
T KOG0272|consen  280 S-------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVA  352 (459)
T ss_pred             c-------cccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEe
Confidence            8       78999999999998877666654 89999999998887764   5789999999999999999988877777


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+|+  |..|| +|+.|++++|||+.... +.++.+|..-|+.|+|+| .|++|+|+|.|++ +|||..++..+++.+
T Consensus       353 fsPN--Gy~lA-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksL  426 (459)
T KOG0272|consen  353 FSPN--GYHLA-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSL  426 (459)
T ss_pred             ECCC--ceEEe-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhh
Confidence            7665  48888 59999999999998765 568999999999999998 6899999999999 999999999888754

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=7e-28  Score=225.46  Aligned_cols=199  Identities=15%  Similarity=0.208  Sum_probs=173.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+|.++|..++|+||.++|+++++|+ +|+|.+++...+....- |..++..+.+++.+-++|+++       .|++.+
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~GyYFatas-------~D~tAr  518 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGYYFATAS-------HDQTAR  518 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCceEEEecC-------CCceee
Confidence            468899999999999999999999855 99999999888766664 677888888777777777765       689999


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +|........+.+..+ +.|.|+.|||+.-.+++   +.+||+||+.++..++.|.+|..++.+++||+.+  .+|| +|
T Consensus       519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G--r~La-Sg  595 (707)
T KOG0263|consen  519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG--RYLA-SG  595 (707)
T ss_pred             eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC--ceEe-ec
Confidence            9999988887777655 68999999998766654   4799999999999999999999999999988854  9999 69


Q ss_pred             CCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          236 LQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       236 s~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +.||.|.|||+... .+..+++|++.|.+|.||.||..||+||.|.+ |++||+..-
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-V~lWD~~~~  651 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-VRLWDLTKV  651 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-EEEEEchhh
Confidence            99999999999985 45689999999999999999999999999999 999998753

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.1e-28  Score=213.83  Aligned_cols=195  Identities=16%  Similarity=0.215  Sum_probs=169.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+|..+|..|+|+|+|++|+|++- .+.++||+.+..+++..+- |..++..+.+.+++.+.+++|       .|..-+|
T Consensus       258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL~~tGG-------lD~~~Rv  329 (459)
T KOG0272|consen  258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGSLAATGG-------LDSLGRV  329 (459)
T ss_pred             hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCceeeccC-------ccchhhe
Confidence            567789999999999999999996 5589999999988777775 677788888888887665554       6788999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||++++.++-.+..+ .+|.+|.|+|++..+++   |++++|||++.-+.++++.+|.+-+.-+.|++ ..|.+|+ +++
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~-Tas  407 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP-QEGYFLV-TAS  407 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc-cCCeEEE-Ecc
Confidence            999999999888866 58999999998776665   47999999998888999999999888888888 3457777 599


Q ss_pred             CCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          237 QKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       237 ~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .|++++||...+- +++++.+|.+.|-++++++||.+|+|+|.|++ ||+|.
T Consensus       408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT-~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT-IKLWR  458 (459)
T ss_pred             cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCce-eeecc
Confidence            9999999998765 46799999999999999999999999999999 99995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=4.6e-26  Score=202.55  Aligned_cols=202  Identities=18%  Similarity=0.243  Sum_probs=166.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ....|++++||.+|++||+|+.+| +|||+..-. ...+... |.+++..+.|...+++++.++       .|+++.+||
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~-HkgPI~slKWnk~G~yilS~~-------vD~ttilwd  304 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQ-HKGPIFSLKWNKKGTYILSGG-------VDGTTILWD  304 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhc-cCCceEEEEEcCCCCEEEecc-------CCccEEEEe
Confidence            346899999999999999999988 779997643 3333333 789999999999999888877       789999999


Q ss_pred             CCCCcEEEEeecCCce-EEEEEeCC-eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          163 DHQSRCIGELSFRSEV-RSVKLRRD-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v-~~v~~~~~-~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      ..+++..+.+.+++.. ..|.|-.+ .++.+ +++.|+++.+....++.++.+|.+.+.++.+  ++.+.+|+ ++|+|+
T Consensus       305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~--n~tg~LLa-S~SdD~  381 (524)
T KOG0273|consen  305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW--NPTGSLLA-SCSDDG  381 (524)
T ss_pred             ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE--CCCCceEE-EecCCC
Confidence            9999999999998866 77888654 44443 3689999999999999999998777655554  44557887 588888


Q ss_pred             eEEEEEcC---------------------------------------------------C-cceEeecccccceeEEEEC
Q 022387          240 QVRVEHYA---------------------------------------------------S-KRTKFIMAHDSRIACFALT  267 (298)
Q Consensus       240 ~v~i~~~~---------------------------------------------------~-~~~~~~~~H~~~V~~l~fs  267 (298)
                      +++||..+                                                   . .++.+|..|..+|.+|+||
T Consensus       382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS  461 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS  461 (524)
T ss_pred             eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec
Confidence            88888732                                                   1 1244678999999999999


Q ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       268 pdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      |+|+|||+|+.||. |.||+.++|+++++|.
T Consensus       462 ~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  462 PNGRYLASGSLDGC-VHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             CCCcEEEecCCCCe-eEeccccchheeEeec
Confidence            99999999999999 9999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-25  Score=184.66  Aligned_cols=208  Identities=13%  Similarity=0.118  Sum_probs=167.3

Q ss_pred             cccCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCc-----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC
Q 022387           79 STSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (298)
                      .+...|+..|+.++..+.+ +.|.+++.|. +.+|++....     .+.+..- |.+.+.-+.++++++....++     
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~s-----   82 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSAS-----   82 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEecc-----
Confidence            3456788999999999874 5777888755 7799875433     2223332 678888888899998777766     


Q ss_pred             CCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEecc--CCCcceEEEEeC
Q 022387          152 QYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQG  225 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~--~~~~~~~~~s~~  225 (298)
                        -|+++|+||+.+++..+.|..+. .|++++|+++.--+++   |.+|++||+..... .++..+  .+.+.++.|+|.
T Consensus        83 --wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   83 --WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             --ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCC
Confidence              68999999999999888887664 8999999986433332   58999999875543 455443  677888899988


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .++.+|+ +++.|++|++||+.+-++. .+.+|++.|+.|++||||.+.|+|+.||. +.+||++.+++++.+
T Consensus       160 ~~~p~Iv-s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  160 ESNPIIV-SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSL  230 (315)
T ss_pred             CCCcEEE-EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEec
Confidence            7778888 6999999999999887665 78999999999999999999999999999 999999999998654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-25  Score=184.71  Aligned_cols=204  Identities=11%  Similarity=0.113  Sum_probs=162.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+|...|..+..++||++..+|+.|+ +|+||+.+++...+... |...+..++++.+...++..+       .|++|++
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGS-------rDkTikl  131 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGS-------RDKTIKL  131 (315)
T ss_pred             eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCC-------Ccceeee
Confidence            45777999999999999999998765 78999999865444443 666777777776665554444       7899999


Q ss_pred             EeCCCCcEEEEeec--CCceEEEEEeCCe---EEE-E-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          161 WDDHQSRCIGELSF--RSEVRSVKLRRDR---IIV-V-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~~~~~~~~~--~~~v~~v~~~~~~---l~v-~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ||....+.......  ..-|.++.|+|+.   +++ + .|++|++||+++.+..+.+.+|...+..+++++|+  .+.+ 
T Consensus       132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG--slca-  208 (315)
T KOG0279|consen  132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG--SLCA-  208 (315)
T ss_pred             eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC--CEEe-
Confidence            99977665443333  4569999999862   222 2 26899999999999999999999988888988875  7777 


Q ss_pred             ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      +|..||.+.+||+..++-..-..|...|++++|+|+...|+.+- +-. |||||+.++.++.++.
T Consensus       209 sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~s-IkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATS-IKIWDLESKAVVEELK  271 (315)
T ss_pred             cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCc-eEEEeccchhhhhhcc
Confidence            69999999999999877666667899999999999988887774 555 9999999999988763

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=194.73  Aligned_cols=207  Identities=16%  Similarity=0.250  Sum_probs=175.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ++|...|..|+|+..|++||+.+.|. +++|+.++..........|++.+..+.+.+.++.++.++       .|++|+.
T Consensus       147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s-------rD~tik~  219 (406)
T KOG0295|consen  147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS-------RDNTIKA  219 (406)
T ss_pred             hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-------cccceeE
Confidence            67888999999999999999999877 889999874322222223688889999888888887777       7899999


Q ss_pred             EeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC----------
Q 022387          161 WDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV----------  226 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~----------  226 (298)
                      ||+.++-++.++..+. -|..+..+.++.+++.   +.+|++|-+.++++...+..|+.++.++++.+..          
T Consensus       220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            9999999999998765 5788888888766654   4799999999998888889999999988876542          


Q ss_pred             ---CCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          227 ---GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       227 ---d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                         .+++++ +|+.|++|++||+.+.. +.++.+|..-|+.++|+|-|+||+++.+|++ +||||+++++|+++.
T Consensus       300 ~~~~~~~l~-s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  300 STNGGQVLG-SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTL  372 (406)
T ss_pred             CCCCccEEE-eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeecc
Confidence               135666 69999999999998875 5599999999999999999999999999999 999999999998764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.94  E-value=2.6e-24  Score=181.64  Aligned_cols=206  Identities=15%  Similarity=0.140  Sum_probs=164.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEE--ecCCCEEEEEeCCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEM--LFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      +..+|.++|.++.|++|+++|++++.|| +.|||.-+..++....+   ...-++.+  +++++.+|.  ||     -|+
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAc--GG-----LdN  119 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVAC--GG-----LDN  119 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEe--cC-----cCc
Confidence            4478889999999999999999999977 67999988777666664   33444444  455555444  44     679


Q ss_pred             eEEEEeCCCC------cEEEEeecCC-ceEEEEEeCCeEEE-E-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387          157 KVMIWDDHQS------RCIGELSFRS-EVRSVKLRRDRIIV-V-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       157 ~v~iWD~~~~------~~~~~~~~~~-~v~~v~~~~~~l~v-~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      ...||++.+.      ...+++..+. -+.++.|-.+..++ + ++.++.+||+++++.+..|.+|...+..+++++. +
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-~  198 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-D  198 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-C
Confidence            9999999854      2334555553 56667776554333 3 3579999999999999999999888888888874 4


Q ss_pred             CeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      ++.++ +|+.|+..++||+.... ..+|.+|.+.|++|+|.|+|.-|||||+|++ +|+||++..+.+..|+
T Consensus       199 ~ntFv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  199 GNTFV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYS  268 (343)
T ss_pred             CCeEE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeec
Confidence            47777 69999999999998775 4589999999999999999999999999999 9999999999887774

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=1.5e-25  Score=185.63  Aligned_cols=198  Identities=19%  Similarity=0.306  Sum_probs=156.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|+.-|++|+|++|.++|.+|+. +-+|||+++..+..- .++. |.+++.-+.|+....-++.++       .|++||
T Consensus        97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSa-------dd~tVR  168 (334)
T KOG0278|consen   97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSA-------DDKTVR  168 (334)
T ss_pred             hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeec-------cCCceE
Confidence            456669999999999999999998 457899987544211 1111 567788888877665555544       689999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      +||.+++..++.+.+..+|.++..+++  .+.++-.+.|++||..+..+++.++...+ +.+.+++|  +..++++ |..
T Consensus       169 LWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n-V~SASL~P--~k~~fVa-Gge  244 (334)
T KOG0278|consen  169 LWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN-VESASLHP--KKEFFVA-GGE  244 (334)
T ss_pred             EEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc-cccccccC--CCceEEe-cCc
Confidence            999999999999999999999998765  34444568999999999999888775433 33444444  4466664 999


Q ss_pred             CceEEEEEcCCcceE-ee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          238 KGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       238 dg~v~i~~~~~~~~~-~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      |+.++.+|+.+.... .+ ++|-++|-||.|+|||.+.|+||+||+ ||||.+..++
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~  300 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGK  300 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCC
Confidence            999999999887654 43 899999999999999999999999999 9999987665

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.6e-24  Score=202.06  Aligned_cols=201  Identities=18%  Similarity=0.240  Sum_probs=169.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+|-..+++++++|||++||+|++|| |+|||...+-+..+..- |..++..+.+...++.+..++       -||+||.
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssS-------LDGtVRA  418 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSS-------LDGTVRA  418 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEee-------cCCeEEe
Confidence            56778999999999999999999976 89999999877666654 678888888888898888877       7899999


Q ss_pred             EeCCCCcEEEEeecCCc--eEEEEEeCCeEEEE-EC-C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFRSE--VRSVKLRRDRIIVV-LE-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~--v~~v~~~~~~l~v~-~~-~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      ||+...++.+++..+.+  ..|++..+...+++ ++ +  .|++|++++++++-.+.+|+.|+..++|++++  ..|| +
T Consensus       419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~--~~La-S  495 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG--SLLA-S  495 (893)
T ss_pred             eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc--CeEE-e
Confidence            99999999999988764  46677776444443 32 2  89999999999999999999999988888876  6787 6


Q ss_pred             cCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      ||.|.+|++|++-.. ....--.+...|..++|+|||+-||.+..||. |.+||...+.++
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~  555 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQV  555 (893)
T ss_pred             ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceee
Confidence            999999999997543 23333457788999999999999999999999 999999988765

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.94  E-value=3.2e-25  Score=207.71  Aligned_cols=210  Identities=14%  Similarity=0.193  Sum_probs=172.8

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc-----------------------------eEEEEee-
Q 022387           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-----------------------------EIFRRDF-  124 (298)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~-----------------------------~~~~~~~-  124 (298)
                      ..|++...+ ..|+|+.|++|+++||.|-.+. |++|.+.+.+                             ....+.+ 
T Consensus       370 c~YT~~nt~-~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  370 CMYTFHNTY-QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEEEEcC-CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            445554443 5899999999999999998865 8899776311                             0011111 


Q ss_pred             ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEE
Q 022387          125 ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYN  200 (298)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd  200 (298)
                      .|.++|..+.+.++.++|+.++       .|++||+|.+.+..++..+..+ .+|..+.|+|.....++   |++-++|.
T Consensus       449 GH~GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             cCCCceeeeeecccccceeecc-------CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            1778888888888888887777       6899999999999988887765 58999999987544443   57999999


Q ss_pred             cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCC
Q 022387          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTK  279 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~D  279 (298)
                      ....++.+.+.+|.+.+.++.|+|+.  .++| +||.|.+|++||..++. +..|.+|+++|.+|+|||+|++||+|++|
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs--~Y~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed  598 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNS--NYVA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED  598 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcc--cccc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence            99999999999999999999988865  8998 59999999999998764 56899999999999999999999999999


Q ss_pred             CCEEEEEECCCCcEEEec
Q 022387          280 GTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       280 gt~IrIWd~~tg~~l~~~  297 (298)
                      |. |+|||+.+|+++.++
T Consensus       599 ~~-I~iWDl~~~~~v~~l  615 (707)
T KOG0263|consen  599 GL-IKIWDLANGSLVKQL  615 (707)
T ss_pred             Cc-EEEEEcCCCcchhhh
Confidence            99 999999999987664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=202.25  Aligned_cols=204  Identities=16%  Similarity=0.239  Sum_probs=166.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCc--eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..+...|.++.|++||++|++++.+ .+++|+....+  ...... .|...+..+.+++++..++.++       .|++|
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s-------~D~ti  227 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGS-------DDKTL  227 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEec-------CCceE
Confidence            3446799999999999999999764 47899996665  333322 2567788888888888666666       78999


Q ss_pred             EEEeC-CCCcEEEEeecC-CceEEEEEeCCe-EEEE-E-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          159 MIWDD-HQSRCIGELSFR-SEVRSVKLRRDR-IIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       159 ~iWD~-~~~~~~~~~~~~-~~v~~v~~~~~~-l~v~-~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +|||+ ..+.++..+..+ ..|++++|+++. +++. . |++|+|||+++++++..+.+|...+..++|+.++  .+|++
T Consensus       228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~--~~l~s  305 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG--NLLVS  305 (456)
T ss_pred             EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC--CEEEE
Confidence            99999 455788888655 589999999865 3333 2 5899999999999999999999988777776654  88884


Q ss_pred             ecCCCceEEEEEcCCcc---eEeecccccc--eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~---~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       ++.||.|+|||..+..   ..++..+...  +++++|+|+|++|++++.|++ +++||+..++++.+|
T Consensus       306 -~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  306 -ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTY  372 (456)
T ss_pred             -cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeee
Confidence             7999999999999877   3477777666  999999999999999999999 999999999988776

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=2.3e-24  Score=200.98  Aligned_cols=197  Identities=16%  Similarity=0.296  Sum_probs=162.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC--eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~--gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ...+|..++||..|++||.|+.+  .+.||++++..-++.+.. |-..+.++++++++..+++++       .||+||||
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~-------eDgKVKvW  377 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGA-------EDGKVKVW  377 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEecc-------CCCcEEEE
Confidence            34589999999999999999985  578999988665555543 566788888888888887766       78999999


Q ss_pred             eCCCCcEEEEeecC-CceEEEEEeCCe--EE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          162 DDHQSRCIGELSFR-SEVRSVKLRRDR--II-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~~--l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      |..++-|+.+|..+ +.|..+.|+...  ++ .+.||+|+.||+...+..++|... .++...+++.|+.|.++.+ |+.
T Consensus       378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A-G~~  455 (893)
T KOG0291|consen  378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA-GAQ  455 (893)
T ss_pred             eccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe-ecc
Confidence            99999999999765 579999997643  22 235899999999999999998864 4555566666776677764 777


Q ss_pred             Cc-eEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          238 KG-QVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       238 dg-~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      |. .|.+|+++++++. .+.+|.++|.+++|+|+|..|||+|+|.| ||+||+-..
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s  510 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSS  510 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeecc
Confidence            76 5677999998876 89999999999999999999999999999 999998754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=177.54  Aligned_cols=194  Identities=16%  Similarity=0.208  Sum_probs=158.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+|..-+.|+.|-.|+.+|-..++.+..+||+++++......- |.+++..+.+.+ +++.++..+       .|+..+|
T Consensus       142 ~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~-------cD~~akl  213 (343)
T KOG0286|consen  142 AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGG-------CDKSAKL  213 (343)
T ss_pred             cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecc-------cccceee
Confidence            5788899999999977655444456688999999988655543 678888888887 677766655       7899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la~s  234 (298)
                      ||++.+.+.+.|..+ +.|.+|.|.|+....++   +++.++||++..+.+..+....  .++.+++|+.++  .+|. +
T Consensus       214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG--RlLf-a  290 (343)
T KOG0286|consen  214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG--RLLF-A  290 (343)
T ss_pred             eeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc--cEEE-e
Confidence            999999999999876 58999999997766654   3799999999988888877533  345566776665  7776 4


Q ss_pred             cCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      |..|..+.+||.-.. ....|.+|...|+||..+|||.-|+|||.|.+ +|||.
T Consensus       291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~-lriW~  343 (343)
T KOG0286|consen  291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST-LRIWA  343 (343)
T ss_pred             eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh-eeecC
Confidence            999999999997544 45589999999999999999999999999999 99994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4e-24  Score=175.79  Aligned_cols=201  Identities=15%  Similarity=0.220  Sum_probs=163.1

Q ss_pred             CCCCCCeEEEEEcCCCCE-EEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGC-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~-lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..+.++|+.+.|+-||+| |++|+++++++||...+..+.+... |++.+.-+...++...++.++       .|+.|.+
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~G-------gDk~v~v   85 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCG-------GDKAVQV   85 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCC-------CCceEEE
Confidence            567789999999999998 5567778999999888777666554 677777777777777776666       4799999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcC--CCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~--~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      ||+.+|+.++.+..+ ..|..+.|+..--+++.   +.++++||-+  ..++++.+......+.++.++-+   .+++  
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIva--  160 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVA--  160 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEe--
Confidence            999999999999876 58999999987555543   5799999984  57888888776666777776643   4554  


Q ss_pred             cCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+.||+++.||+..+.+.. ..-..+|+|++||+||+....++.|++ +|+-|-.+|+++++|
T Consensus       161 GS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSY  221 (307)
T ss_pred             eccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHh
Confidence            9999999999998776542 223458999999999999999999999 999999999998876

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.8e-24  Score=201.06  Aligned_cols=217  Identities=15%  Similarity=0.188  Sum_probs=169.0

Q ss_pred             CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCC
Q 022387           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (298)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (298)
                      |.............|.++|+.|+|+|++.++++|++|- |+||+.++.+++++... |..=+..+.+.+.-..++.++  
T Consensus        36 WDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSAS--  112 (1202)
T KOG0292|consen   36 WDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSAS--  112 (1202)
T ss_pred             ehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCceEEEcc--
Confidence            33333334445578899999999999999999999955 88999999999888764 455566666666666676666  


Q ss_pred             CCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCC-eEEE-E-ECCeEEEEEcCCCeE------------------
Q 022387          149 PDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD-RIIV-V-LEQKIFVYNFADLKL------------------  206 (298)
Q Consensus       149 ~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~-~l~v-~-~~~~I~iwd~~~~~~------------------  206 (298)
                           +|.||+||+++++.++..+..+. -|.|..||+. .+++ + .|.+||+||+...+.                  
T Consensus       113 -----DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  113 -----DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             -----CCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence                 78999999999999999998775 6899999983 3333 3 368999999953111                  


Q ss_pred             -----------EEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE---eecccccceeEEEECCCCCE
Q 022387          207 -----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQL  272 (298)
Q Consensus       207 -----------i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~~~H~~~V~~l~fspdg~~  272 (298)
                                 .+.+.+|..-+.-++|++  ...+++ ||++|..|++|.++..+..   +.++|...|.++-|+|...+
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhp--TlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHP--TLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecC--CcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence                       122345555555556555  446676 7999999999999866543   78999999999999999999


Q ss_pred             EEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          273 LATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       273 lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      +.|.|+|++ |||||+...+.+++|+
T Consensus       265 IlSnsEDks-irVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  265 ILSNSEDKS-IRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             eEecCCCcc-EEEEecccccceeeee
Confidence            999999999 9999999999998873

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.3e-24  Score=187.68  Aligned_cols=215  Identities=13%  Similarity=0.142  Sum_probs=164.6

Q ss_pred             CCCCCCCCCCc-ccCCCCCCeEEEEEcC-----CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCE
Q 022387           69 YQMPLPSPAES-TSSSPPPTLLHISFNQ-----DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI  141 (298)
Q Consensus        69 ~~~~~~~~~~~-~~~~~~~~V~~v~fs~-----dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (298)
                      ++.+.....+. ....|+..|++++|.|     ..++||+++.|| ++|||+....+++...- |...+.++.|  .+..
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrw--GG~g  259 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRW--GGEG  259 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEE--cCCc
Confidence            44544443332 2367888999999976     677999999866 89999998888776653 4555666555  3333


Q ss_pred             EEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeC-------------C---------------------
Q 022387          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRR-------------D---------------------  186 (298)
Q Consensus       142 ~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~-------------~---------------------  186 (298)
                      ++..+ +     .|++||+|+...|.+.++++.+. -|..++.+-             +                     
T Consensus       260 liySg-S-----~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~  333 (480)
T KOG0271|consen  260 LIYSG-S-----QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK  333 (480)
T ss_pred             eEEec-C-----CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence            33322 2     78999999999999888887664 566666541             1                     


Q ss_pred             ----eEEEEEC-CeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeeccccc
Q 022387          187 ----RIIVVLE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDS  259 (298)
Q Consensus       187 ----~l~v~~~-~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~  259 (298)
                          .++.+.| .++.+|+-. ..+++.++.+|.+-+..+.|+|+  +.++| +++.|+.|++|+..+++. .+|++|-.
T Consensus       334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd--~r~IA-SaSFDkSVkLW~g~tGk~lasfRGHv~  410 (480)
T KOG0271|consen  334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD--GRYIA-SASFDKSVKLWDGRTGKFLASFRGHVA  410 (480)
T ss_pred             cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC--ccEEE-EeecccceeeeeCCCcchhhhhhhccc
Confidence                3566665 699999974 45678888888777666666665  58888 699999999999988764 58999999


Q ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +|+.|+||.|.++|++||.|.+ +||||+++.|+...
T Consensus       411 ~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~D  446 (480)
T KOG0271|consen  411 AVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQD  446 (480)
T ss_pred             eeEEEEeccCccEEEEcCCCce-EEEEEeeeeeeccc
Confidence            9999999999999999999999 99999999887554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4.7e-24  Score=177.62  Aligned_cols=206  Identities=14%  Similarity=0.191  Sum_probs=160.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEe-cCCCEEEEEeCCCCCCCCCCe
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEML-FRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      .++|.++|.+|+|+.||..||+|+- +.++||+++..+.......+ |.+.+..++|. .+++.+++++       .|++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-------~dk~   88 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-------GDKT   88 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-------CCce
Confidence            4677789999999999999999987 55889999887554444332 45556666664 4677888888       5689


Q ss_pred             EEEEeCCCCcEEEEeecCCceEEEEEeCC------------------------------------------eEEEEE--C
Q 022387          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD------------------------------------------RIIVVL--E  193 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~------------------------------------------~l~v~~--~  193 (298)
                      |++||.+.++++..+.....-..+.|+|+                                          .++..+  .
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            99999999888776654433333333332                                          222222  2


Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCE
Q 022387          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQL  272 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~  272 (298)
                      |.|.|......+++.+++.|  +..++++.++|+|.++|+ |+.|..+.+||.+.- .+..+..|.-+|+.|.||-||++
T Consensus       169 G~v~ILsypsLkpv~si~AH--~snCicI~f~p~GryfA~-GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~  245 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAH--PSNCICIEFDPDGRYFAT-GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM  245 (313)
T ss_pred             ceEEEEeccccccccccccC--CcceEEEEECCCCceEee-ccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence            56777776677777788876  467889999999999996 999999999998754 45688899999999999999999


Q ss_pred             EEEEeCCCCEEEEEECCCCcEEEec
Q 022387          273 LATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       273 lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ||+||+|.- |-|=++++|..+++.
T Consensus       246 lASaSEDh~-IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  246 LASASEDHF-IDIAEVETGDRVWEI  269 (313)
T ss_pred             eeccCccce-EEeEecccCCeEEEe
Confidence            999999999 999999999998875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.9e-24  Score=189.76  Aligned_cols=202  Identities=15%  Similarity=0.160  Sum_probs=148.5

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce---EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      +...|.+.|..+.||++|+|||+|+.+. ..+|.+.....   ..+... |..++..+.|+++.++++.++.       +
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~-------~  290 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGF-------D  290 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCc-------h
Confidence            3467888999999999999999999855 66898755433   333333 6778999999999999988873       3


Q ss_pred             CeEEEEeCCCCcEEEEeecC--CceEEEEEeCC-----------------------------------------------
Q 022387          156 NKVMIWDDHQSRCIGELSFR--SEVRSVKLRRD-----------------------------------------------  186 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~-----------------------------------------------  186 (298)
                      ..+++||+.+|.+...+...  ..+.+++|.++                                               
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl  370 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVL  370 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEE
Confidence            44666666665444333222  12333333222                                               


Q ss_pred             ------------------------------------e-EE-EE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387          187 ------------------------------------R-II-VV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       187 ------------------------------------~-l~-v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                                                          . ++ +. .++.|++||+...++++++.+|.....++.-++.+.
T Consensus       371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence                                                1 11 11 246888899888888888888887777777677666


Q ss_pred             CeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +..+++|||.|+.|+||+...+. +.++.+|...|+||+|+|. -.+||+||+||+ ||||....
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~  514 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD  514 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence            64555589999999999987665 5599999999999999985 589999999999 99998764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.7e-24  Score=194.37  Aligned_cols=204  Identities=14%  Similarity=0.187  Sum_probs=176.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..-+|+++.|-+--+++++|++|. ||||+..+.+.+...+. |..=++++.+++...++.+++       +|-+||+||
T Consensus        54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~  125 (794)
T KOG0276|consen   54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWD  125 (794)
T ss_pred             cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCCeEEecC-------CccEEEEee
Confidence            345899999999999999999977 89999999998777765 677788999988888888877       789999999


Q ss_pred             CCCC-cEEEEeecCC-ceEEEEEeCC---eEEE-EECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          163 DHQS-RCIGELSFRS-EVRSVKLRRD---RIIV-VLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       163 ~~~~-~~~~~~~~~~-~v~~v~~~~~---~l~v-~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      .+++ .+.++++.|. -|.+++|+|+   .++. +.|++|++|.+....+..++++|..-+.++++-+.+|..+|+ +|+
T Consensus       126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI-sga  204 (794)
T KOG0276|consen  126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI-SGA  204 (794)
T ss_pred             ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE-ecC
Confidence            9875 5667777765 5999999974   4444 358999999999999999999999999999999988888998 699


Q ss_pred             CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|-.|+|||++++. +.++.+|...|+.++|+|.-.+++|||+||+ +|||+-.|-++.+++
T Consensus       205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTL  265 (794)
T ss_pred             CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhh
Confidence            99999999999886 4589999999999999999999999999999 999998887765543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=8.1e-23  Score=170.77  Aligned_cols=206  Identities=13%  Similarity=0.147  Sum_probs=171.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+|+.+++.|.+|.+|++|.+.+.|. .-||-...++.+-+..- |.+.+-++....+...+++.+       .|.+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGS-------AD~t~k   77 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGS-------ADQTAK   77 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeecc-------ccceeE
Confidence            356889999999999999999998866 56998888888777765 678888888888888777766       789999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEEC------CeEEEEEcC-------CCeEEEEEeccCCCcceEEEEe
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE------QKIFVYNFA-------DLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~------~~I~iwd~~-------~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      |||+.+|+++..+++...|..+.|+.  +.++++++      +.|.++|++       ..+++.++..+...+...-  +
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~--W  155 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL--W  155 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee--e
Confidence            99999999999999999999999986  45555554      589999997       4566778887765444444  4


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCcce--EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~~~--~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      ++-+..|+ +|..||.|.+||..++..  .....|...|+.|+|++|..+|+|+|.|.+ .|+||+.+-+++++|.
T Consensus       156 g~l~~~ii-~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  156 GPLGETII-AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT  229 (327)
T ss_pred             cccCCEEE-EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee
Confidence            55557777 499999999999987543  356789999999999999999999999999 9999999999999883

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=3.1e-22  Score=172.83  Aligned_cols=204  Identities=18%  Similarity=0.254  Sum_probs=162.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|+.+|++++|+|++++|++|+.++ +++|++++.+....... |...+..+.+..+.+.+++++       .++.|++
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i   77 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGS-------SDKTIRL   77 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEc-------CCCeEEE
Confidence            36778999999999999999999654 88999988765444443 455666677777776777766       5799999


Q ss_pred             EeCCCCcEEEEeecCC-ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||..+++.+..+..+. .+.++.++++  .++++. ++.|++||+.+.+.+..+..|...+..++++++  +.++++ ++
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~-~~  154 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD--GTFVAS-SS  154 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc--CCEEEE-Ec
Confidence            9999877777766544 7999999874  444455 689999999988888888877666666666554  567764 67


Q ss_pred             CCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+|.|.+|+.... ....+..|...|++++|+|++++|++++.|+. |++||+++++.+.++
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~  215 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTL  215 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecch
Confidence            7999999999754 45578899999999999999999999999999 999999998887665

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.91  E-value=4e-23  Score=178.64  Aligned_cols=207  Identities=16%  Similarity=0.192  Sum_probs=172.1

Q ss_pred             CCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        77 ~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      .+.+-..|.+=|+||++.|-.++|++|+.|+ ++|||+.+++...+..- |...+..+.++....++..++       .|
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~g-------ed  214 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAG-------ED  214 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEec-------CC
Confidence            3444567888999999999999999999855 88999999988777664 566777788888888888877       68


Q ss_pred             CeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          156 NKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      +.|+-||++..+.|+.+-.+ +.|.+++.+|.  .++.+. |.++++||+++...++.+.+|.+++..+.+.+- |.+++
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-dpqvi  293 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-DPQVI  293 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-CCceE
Confidence            99999999999998876654 68999999974  444444 479999999999999999999999877766542 22555


Q ss_pred             EEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                        +|+-|++|++||+..++ +.++..|+..|++++.+|....||++|.|  .|+-|++..|..++.
T Consensus       294 --t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  294 --TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQN  355 (460)
T ss_pred             --EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccCCccchhhc
Confidence              59999999999987654 56899999999999999999999999988  489999999987654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.91  E-value=1.3e-22  Score=171.97  Aligned_cols=198  Identities=17%  Similarity=0.238  Sum_probs=150.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCC-ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ...+|++.|+.+.|+|+|.+||+|+- ..|.+|++... +-....+. |.+.+--+.+..+++.++.++       .|++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~g-------tDk~  113 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCG-------TDKT  113 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEec-------CCce
Confidence            34678899999999999999999986 55889996432 23333443 556566666666777777777       7899


Q ss_pred             EEEEeCCCCcEEEEeecCCc-eEEEEEeC-CeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          158 VMIWDDHQSRCIGELSFRSE-VRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~-v~~v~~~~-~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      |+.||+++|++++.++.+.. |.++.-.. ...++++   ++++++||+++...++++..   .....++.+..+..-+.
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---ceeEEEEEeccccccee
Confidence            99999999999999887765 44444333 2233332   47999999998888877643   23445555544444444


Q ss_pred             EecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                       +|..|+.|++||.... ...++.+|..+|+.|..+|+|.++.+-++|.+ +|+||++-
T Consensus       191 -sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp  247 (338)
T KOG0265|consen  191 -SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRP  247 (338)
T ss_pred             -eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecc
Confidence             5899999999999655 45699999999999999999999999999999 99999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=6.3e-23  Score=174.66  Aligned_cols=208  Identities=16%  Similarity=0.227  Sum_probs=157.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC---------------Cce-EEEEeee-cCCceEEEEEecCCCEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP---------------FRE-IFRRDFE-RGGGIGVVEMLFRCNILA  143 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~---------------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  143 (298)
                      ..|++++++.+||+||.++|+|+.|. |+|+|++.               ... -..+.+. |...+..+.+.+....|+
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence            56888999999999999999999865 88998761               111 1223332 566677777666665555


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCCcEE---EEeecCCceEEEEEeC--CeEEEEEC-CeEEEEEcCCCeEEEEEec-cCCC
Q 022387          144 LVGGGPDPQYPLNKVMIWDDHQSRCI---GELSFRSEVRSVKLRR--DRIIVVLE-QKIFVYNFADLKLLHQIET-IANP  216 (298)
Q Consensus       144 ~~~~~~~~~~~d~~v~iWD~~~~~~~---~~~~~~~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~~~~i~~~~~-~~~~  216 (298)
                      .++       .|++||++|..+-...   ..++-..+|.++.|||  ++++++++ ..+++||+++.++...-.. ..+.
T Consensus       189 S~s-------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  189 SGS-------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             ecc-------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            544       7899999999874333   3344456899999997  56777777 6999999999888765443 2234


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEee-ccccc-ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI-MAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~-~~H~~-~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ..++.+..++.+.+.+ +|+.||-|++||--. +.+.++ ++|.+ .|.+..|..+|+|+.+.+.|.+ |++|.+.+|++
T Consensus       262 ~ai~~V~Ys~t~~lYv-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~  339 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYV-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRM  339 (430)
T ss_pred             cceeEEEecCCccEEE-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCce
Confidence            4566777777778888 599999999999554 445544 57875 5999999999999999999999 99999999999


Q ss_pred             EEecC
Q 022387          294 LQEGC  298 (298)
Q Consensus       294 l~~~~  298 (298)
                      +++|.
T Consensus       340 l~~Yt  344 (430)
T KOG0640|consen  340 LKEYT  344 (430)
T ss_pred             EEEEe
Confidence            99983

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=2.4e-21  Score=182.81  Aligned_cols=205  Identities=17%  Similarity=0.235  Sum_probs=151.6

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCc-------eEEEEeeecCCceEEEEEecCC-CEEEEEeCCCC
Q 022387           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRC-NILALVGGGPD  150 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  150 (298)
                      ..+|.+.|.+++|+| |+.+||+|+.|+ |+||++.+..       .+..... |...+..+.+.+.. +.+++++    
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs----  145 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAG----  145 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEe----
Confidence            357888999999999 889999999866 8899997643       1222222 56778888888764 5666666    


Q ss_pred             CCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc-eEEEEeC
Q 022387          151 PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKG-LCAVSQG  225 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~-~~~~s~~  225 (298)
                         .|++|+|||+++++.+..+..+ ..|.++.|+++.  ++++. +++|++||+++++.+.++..|..... .+.+.+ 
T Consensus       146 ---~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-  221 (493)
T PTZ00421        146 ---ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-  221 (493)
T ss_pred             ---CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-
Confidence               6899999999999888887744 579999998753  44443 58999999999999999888765433 334443 


Q ss_pred             CCCeEEEEec---CCCceEEEEEcCCc--ceEeeccc-ccceeEEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEe
Q 022387          226 VGSLVLVCPG---LQKGQVRVEHYASK--RTKFIMAH-DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       226 ~d~~~la~sG---s~dg~v~i~~~~~~--~~~~~~~H-~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~tg~~l~~  296 (298)
                       ++..+++.|   +.|+.|++||....  ++.....| ...+....|++++++|++++. |++ ||+||+.+++++..
T Consensus       222 -~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~  297 (493)
T PTZ00421        222 -RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFC  297 (493)
T ss_pred             -CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEE
Confidence             334444334   45899999998753  23333333 345667789999999999885 998 99999999987654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=1.1e-23  Score=184.71  Aligned_cols=202  Identities=10%  Similarity=0.117  Sum_probs=161.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      +.+|..|.|.|+|+.|++|+..| +-+|+.......+.... |+..+..+.|+.++..++.+.       .++.||+|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa-HDs~Vr~m~ws~~g~wmiSgD-------~gG~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA-HDSPVRTMKWSHNGTWMISGD-------KGGMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh-hcccceeEEEccCCCEEEEcC-------CCceEEeccc
Confidence            45899999999999999999977 77999865443333332 789999999999888776655       5699999998


Q ss_pred             CCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          164 HQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      ..........++ ..|.+++|+++  .++.|. +++|+|||....+.-+.+.+|.-.+.+++.++.  ..++| +|+.|.
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~--kgLia-sgskDn  244 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT--KGLIA-SGSKDN  244 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc--cceeE-EccCCc
Confidence            765443333344 68999999863  455554 589999999888888888888766666665554  46777 699999


Q ss_pred             eEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       240 ~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      .|++||-++.. +.++.+|+..|..+.|+|++.+|+|+|.|.. +|++|+++.+.++.|+
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r  303 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYR  303 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhh
Confidence            99999988765 5589999999999999999999999999999 9999999887776653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=1.2e-23  Score=184.35  Aligned_cols=209  Identities=20%  Similarity=0.214  Sum_probs=163.0

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387           69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      |+++.......+...|...|++++|+|....|+++++|+ |+|||..-.+....+.. |+-.+.+++|.+...+++.++ 
T Consensus       164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgLiasgs-  241 (464)
T KOG0284|consen  164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGLIASGS-  241 (464)
T ss_pred             ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccceeEEcc-
Confidence            333333333344455668999999999888899999876 78999876665444443 677889999988777766655 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387          148 GPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s  223 (298)
                            .|+.|++||.++++|+.++..+ ..|.++.|+++  .|+.++ |..+++||++.++.+.++++|..-+..+..+
T Consensus       242 ------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~Wh  315 (464)
T KOG0284|consen  242 ------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWH  315 (464)
T ss_pred             ------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccc
Confidence                  6789999999999999887655 58999999875  444444 5799999999999999999988776666555


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcC-CcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYA-SKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~-~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      +-.  .-|.++|..||.|..|.+. .+++. .-.+|...|++|+|+|-|.+|||||.|.+ +|.|.-
T Consensus       316 P~~--~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t-~rfw~r  379 (464)
T KOG0284|consen  316 PLN--ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT-VRFWTR  379 (464)
T ss_pred             ccc--ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc-eeeecc
Confidence            533  3333469999999999987 44444 34689999999999999999999999999 999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.4e-21  Score=183.90  Aligned_cols=203  Identities=19%  Similarity=0.267  Sum_probs=158.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEc-CCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|+.++|+|||+++++|++| +++||++ +....+.+..- |...+..+++.+.++.++.++       .|++|+
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs-------~D~tvr  271 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGNLLVSGS-------DDGTVR  271 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCCEEEEec-------CCCcEE
Confidence            5677899999999999999999985 4899999 44455555543 677777777777776666655       689999


Q ss_pred             EEeCCCCcEEEEeecCC-ceEEEEEeCCe--EEEEE-CCeEEEEEcCCCe--EEEEEeccCCC--cceEEEEeCCCCeEE
Q 022387          160 IWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSLVL  231 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~--~~~~~~s~~~d~~~l  231 (298)
                      |||+++++++..+..+. .|.+++|+++.  ++++. ++.|++||+.+++  ++..+..+..+  +..+.|+  +++.++
T Consensus       272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs--p~~~~l  349 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS--PNGKYL  349 (456)
T ss_pred             EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC--CCCcEE
Confidence            99999999999998765 89999998753  33333 5899999999988  56777776655  4555555  455788


Q ss_pred             EEecCCCceEEEEEcCCcc-eEeecccccc---eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSR---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~-~~~~~~H~~~---V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ++ +..|+.+++|++.... ...+.+|...   +.+..+++.|+++.+|+.|+. |++||+.++..+..
T Consensus       350 l~-~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~  416 (456)
T KOG0266|consen  350 LS-ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQR  416 (456)
T ss_pred             EE-ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhh
Confidence            74 8999999999998654 5578888774   444455789999999999999 99999998765543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.90  E-value=2.2e-23  Score=186.11  Aligned_cols=198  Identities=14%  Similarity=0.154  Sum_probs=155.6

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCC-ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ...+|+..|+++.|.| .+.+|++|+-|+ |+||++-.. +++.+... |...+..+.+...+..+..++       -|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~s-------fD~  280 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSAS-------FDR  280 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeee-------cce
Confidence            3478889999999999 889999998866 789998764 44333332 677888888888888888877       789


Q ss_pred             eEEEEeCCCCcEEEEeecCCceEEEEEeCCe---EEEEE-CCeEEEEEcCCCeEEEEEe---------------------
Q 022387          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIE---------------------  211 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~---l~v~~-~~~I~iwd~~~~~~i~~~~---------------------  211 (298)
                      .|++||+++|+++..+.....+.++.|+++.   +++++ ++.|+.||+++++.++++.                     
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            9999999999999999998889999998752   33333 4788888887654433221                     


Q ss_pred             -------------------------------------------------------------------ccCCCcceEEEEe
Q 022387          212 -------------------------------------------------------------------TIANPKGLCAVSQ  224 (298)
Q Consensus       212 -------------------------------------------------------------------~~~~~~~~~~~s~  224 (298)
                                                                                         +|......|.+.+
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence                                                                               1222222666777


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEE
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd  287 (298)
                      +||+.+|+ +|+.||.+.+||+++-. +..+++|++++..+.|+|. ...+||||.||. |+|||
T Consensus       441 SpDG~~l~-SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-Ikiwd  503 (503)
T KOG0282|consen  441 SPDGRTLC-SGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-IKIWD  503 (503)
T ss_pred             cCCCCeEE-eecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce-eEecC
Confidence            77889998 69999999999998755 4589999999999999997 489999999999 99996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=1.7e-20  Score=161.89  Aligned_cols=203  Identities=17%  Similarity=0.254  Sum_probs=157.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .|...+..+.|++++++|++++.++ +++|+++..+....... |...+..+.+..+...++.++       .++.|++|
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~  120 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSS-------RDKTIKVW  120 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec-cCCcEEEEEEcCCCCEEEEec-------CCCeEEEE
Confidence            4556788999999999999998754 88999988655444442 455677777776655554444       46899999


Q ss_pred             eCCCCcEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          162 DDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       162 D~~~~~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      |+++++.+..+. +...+.++.++++  .++++. ++.|++||+++.+.+..+..+...+..+.++++  +..+++ ++.
T Consensus       121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~-~~~  197 (289)
T cd00200         121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD--GEKLLS-SSS  197 (289)
T ss_pred             ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC--cCEEEE-ecC
Confidence            999888777776 3457999999883  444444 689999999988888888877666666666554  456664 566


Q ss_pred             CceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.|++|+..... ...+..|...|.+++|+|++.++++++.||. |++||+.+++.+.++
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~  257 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTL  257 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEc
Confidence            9999999998654 4467789999999999999999999998999 999999998877654

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=2e-20  Score=177.95  Aligned_cols=203  Identities=12%  Similarity=0.127  Sum_probs=148.3

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCce--------EEEEeeecCCceEEEEEecCCCEE-EEEeCCC
Q 022387           81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE--------IFRRDFERGGGIGVVEMLFRCNIL-ALVGGGP  149 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  149 (298)
                      ...|...|.+++|+|+ +.+||+|+.|+ |+||++.+...        +..... |...+..+.+.+....+ ++++   
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS---  145 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSG---  145 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEe---
Confidence            3578889999999997 78999999866 88999975421        111221 56778888888876654 4444   


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE---
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS---  223 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s---  223 (298)
                          .|++|+|||+++++.+..+.+...|.++.|+++  .+++++ ++.|+|||+++++.+.++..|........+.   
T Consensus       146 ----~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        146 ----FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             ----CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence                579999999999988877777778999999875  343333 5799999999999999999887655443332   


Q ss_pred             eCCCCeEEEEecCCC---ceEEEEEcCC--cceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          224 QGVGSLVLVCPGLQK---GQVRVEHYAS--KRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       224 ~~~d~~~la~sGs~d---g~v~i~~~~~--~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +.+++.+++++|..+   +.|+|||...  +++..  +..+.+.+......++|.+|++|+.|++ ||+|++..+.
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~  296 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS  296 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc
Confidence            235556777555544   4799999884  33333  3334444555555677999999999999 9999998774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=1.3e-20  Score=189.01  Aligned_cols=196  Identities=14%  Similarity=0.179  Sum_probs=146.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc----e--EEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCC
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----E--IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYP  154 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~----~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (298)
                      .|.+.|.+++|+|+|++||+|+.++ |+||+.....    .  .....+.+...+..+.+.. ....+++++       .
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~  553 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------F  553 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------C
Confidence            3678999999999999999999855 8899975321    0  0011111234556666654 355666665       6


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeC-C--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~-~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      |++|+|||+.+++.+..+..+ ..|.++.|++ +  .++++. +++|++||+++++.+.++..+ ..+.++.+. .+++.
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~-~~~g~  631 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFP-SESGR  631 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEe-CCCCC
Confidence            899999999999888887654 5799999985 2  444444 589999999999888888754 333344443 23457


Q ss_pred             EEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          230 VLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ++| +|+.||.|++||.....  ...+.+|...|++++|. ++.+|+|+|.|++ |+|||+..
T Consensus       632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~  691 (793)
T PLN00181        632 SLA-FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSM  691 (793)
T ss_pred             EEE-EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCC
Confidence            777 49999999999997643  45788999999999997 7889999999999 99999975

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.89  E-value=5e-21  Score=172.65  Aligned_cols=209  Identities=17%  Similarity=0.261  Sum_probs=165.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ....|..+|+-..|+|.|.|+|+|.. +.+|||+.-..+.++..++. =.+.+.-+.|.+++..++.++.|...   -+.
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer---fg~  130 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER---FGH  130 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc---eeE
Confidence            34566679999999999999999998 55999998665544444432 25788889999999999999877642   255


Q ss_pred             EEEEeCCCCcEEEEeecCC-ceEEEEEeC---CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          158 VMIWDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~-~v~~v~~~~---~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      +.+||  ++..+.++..++ .|.++.|.+   .+++.+.+ +.|-+|+-.-.+--.++..|.+-+.++.++|+  +.++|
T Consensus       131 ~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fa  206 (603)
T KOG0318|consen  131 VFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFA  206 (603)
T ss_pred             EEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC--CCeEE
Confidence            56666  566677777665 788899865   45666654 79999998777777788888776777777665  58888


Q ss_pred             EecCCCceEEEEEcCCcc-eEeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          233 CPGLQKGQVRVEHYASKR-TKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~-~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       +.+.||+|.+||=++.. +..|.   +|++.|.+|+|+||++.|+|+|.|.+ +||||+.++++++++
T Consensus       207 -t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  207 -TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTW  273 (603)
T ss_pred             -EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEe
Confidence             47889999998877654 45666   99999999999999999999999999 999999999999886

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=1.2e-20  Score=189.25  Aligned_cols=197  Identities=14%  Similarity=0.170  Sum_probs=156.7

Q ss_pred             CCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           85 PPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        85 ~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ...|.+++|++ ++.+||+|+.++ ++|||+.+.+.+..... |.+.+..+.+.+ ++..+++++       .|++|++|
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iW  603 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGS-------DDGSVKLW  603 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEE
Confidence            45799999997 578999998765 88999998776555543 677788888875 566677766       68999999


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCCe-EEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~~-~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      |++++..+..+.....+.++.|++   ..++++. ++.|++||+++.+ .+.++..|...+..+.|. +  +.+++ +|+
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~--~~~lv-s~s  679 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D--SSTLV-SSS  679 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C--CCEEE-EEE
Confidence            999999888888777899999853   3455554 5899999998765 566777787777777765 2  35666 489


Q ss_pred             CCceEEEEEcCC-------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       237 ~dg~v~i~~~~~-------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .||.|++||+..       +.+.++.+|...+++++|+|++.+||+||.|++ |+||+...+..+
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~  743 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPV  743 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCce
Confidence            999999999863       345688999999999999999999999999999 999998765443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.7e-20  Score=155.92  Aligned_cols=200  Identities=13%  Similarity=0.190  Sum_probs=160.5

Q ss_pred             cccCCCCCCeEEEEEcCC-CCEEEEEcC-CeEEEEEcCCC-ceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           79 STSSSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPF-REIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~d-g~~lasgs~-~gi~vw~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      .....|+.+|..++|+|- |..||+++. +.+|||+.... ....+..+  .|...++.+++++.+++|+.++       
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------   80 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------   80 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------
Confidence            344577789999999998 899999887 66999998742 22212111  1678899999999999998888       


Q ss_pred             CCCeEEEEeCCCC--cEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcC---CCeEEEEEeccCCCcceEEEEe
Q 022387          154 PLNKVMIWDDHQS--RCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       154 ~d~~v~iWD~~~~--~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~---~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      .|.++.||.-..+  +++..++.+ .+|.+++|+.+  +|+.|+ ++.|-||.+.   ..+++..++.|.+.+..+.++|
T Consensus        81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP  160 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP  160 (312)
T ss_pred             ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence            7899999987654  577788776 58999999864  566665 4799999984   4677888888988888888877


Q ss_pred             CCCCeEEEEecCCCceEEEEEcC-Cc---ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYA-SK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~-~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..  .+|+ ++++|.+|++|... ..   .+.++.+|...|.+++|++.|..|+++++|++ |+||.+.
T Consensus       161 t~--dlL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~  225 (312)
T KOG0645|consen  161 TE--DLLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLY  225 (312)
T ss_pred             Cc--ceeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeec
Confidence            64  5666 69999999997765 32   25689999999999999999999999999999 9999954

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.5e-21  Score=166.21  Aligned_cols=195  Identities=13%  Similarity=0.130  Sum_probs=161.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.++.|-|-|.+|++.+. .+|+.|+++++-++.+... |..-+.++....++.++|.++       .|.+|++
T Consensus       190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s-------~dqtl~v  261 (406)
T KOG0295|consen  190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCS-------NDQTLRV  261 (406)
T ss_pred             cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCeeEEEecC-------CCceEEE
Confidence            567779999999999999999987 6699999999988777664 455566666666666666655       7899999


Q ss_pred             EeCCCCcEEEEeecCC-ceEEEEEeCC-----------------eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387          161 WDDHQSRCIGELSFRS-EVRSVKLRRD-----------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~-----------------~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~  221 (298)
                      |=+.++++...+..++ +|-+++|-+.                 .+.++. |++|++||+.++.++-++.+|.+.+..++
T Consensus       262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence            9999998777766554 5666666332                 233332 58999999999999999999999988888


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      |++.+  .+|+ |+.+|+++++||++.++ ++++.+|..-|++++|+.+..+++|||-|.+ +|+|.-
T Consensus       342 f~p~G--kyi~-ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt-~KvwEc  405 (406)
T KOG0295|consen  342 FSPGG--KYIL-SCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWEC  405 (406)
T ss_pred             EcCCC--eEEE-EEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce-eeeeec
Confidence            88765  8888 69999999999999876 5689999999999999999999999999999 999963

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.88  E-value=4.8e-21  Score=181.49  Aligned_cols=200  Identities=17%  Similarity=0.235  Sum_probs=163.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+|.+.|.+++|..-+.+|++|+. .+++|||+.++++...... |...+.+  +......++.  |+     .|.+|+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~--~~~~~~~~~s--gs-----~D~tVk  314 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRC--LTIDPFLLVS--GS-----RDNTVK  314 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEE--EEccCceEee--cc-----CCceEE
Confidence            4688899999999987789999995 6799999999998777663 3333333  3333433333  33     689999


Q ss_pred             EEeCCCCcEEEEee-cCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       160 iWD~~~~~~~~~~~-~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      +||+.++.++..+. +...|.++..+.+.+++++ +++|++||+.++++++++.+|...+..+.+...   ..+. +|+.
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~---~~~~-Sgs~  390 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE---NRLL-SGSL  390 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc---ceEE-eeee
Confidence            99999999999998 7789999999988777776 589999999999999999998887776655432   3444 7999


Q ss_pred             CceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+.|++||+.++  .+.++.+|.+.|..+.+  .+++|.+++.|++ ||+||..++++++++
T Consensus       391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~  449 (537)
T KOG0274|consen  391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTL  449 (537)
T ss_pred             ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeee
Confidence            999999999987  56699999999977655  6789999999999 999999999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.6e-20  Score=154.57  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=152.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ...|+..|++|+|+|.|++||+|+-|. +.||......  ++..++- |+..+.++.|+.++++||+++       .|+.
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCS-------RDKS  128 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCS-------RDKS  128 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEee-------CCCe
Confidence            346778999999999999999999755 6799776443  4444444 788999999999999999999       8899


Q ss_pred             EEEEeCCCCc---EEEEee-cCCceEEEEEeC--CeEEEEE-CCeEEEEEcC---CCeEEEEEeccCCCcceEEEEeCCC
Q 022387          158 VMIWDDHQSR---CIGELS-FRSEVRSVKLRR--DRIIVVL-EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       158 v~iWD~~~~~---~~~~~~-~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~---~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      |-||.+..+.   ++.-++ |.+.|..+.|||  +.|+.+. +++|++|+-.   +.+++.++..|.+.+.+++|.+.  
T Consensus       129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~--  206 (312)
T KOG0645|consen  129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI--  206 (312)
T ss_pred             EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC--
Confidence            9999987543   444455 446899999999  5666654 7999999875   56788999998876666666554  


Q ss_pred             CeEEEEecCCCceEEEEEcC------------------------------------Cc---ce-----EeecccccceeE
Q 022387          228 SLVLVCPGLQKGQVRVEHYA------------------------------------SK---RT-----KFIMAHDSRIAC  263 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~------------------------------------~~---~~-----~~~~~H~~~V~~  263 (298)
                      +..|+ +++.|++|+||..-                                    ..   +.     +.-.+|...|++
T Consensus       207 G~rl~-s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs  285 (312)
T KOG0645|consen  207 GSRLV-SCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS  285 (312)
T ss_pred             CceEE-EecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence            47777 48899998888711                                    00   00     012468889999


Q ss_pred             EEECCC-CCEEEEEeCCCCEEEEEECC
Q 022387          264 FALTQD-GQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       264 l~fspd-g~~lAt~S~Dgt~IrIWd~~  289 (298)
                      |+|+|. ..+|++||+||. |++|.+.
T Consensus       286 V~w~p~~~~~L~s~~DDG~-v~~W~l~  311 (312)
T KOG0645|consen  286 VQWNPKVSNRLASGGDDGI-VNFWELE  311 (312)
T ss_pred             EEEcCCCCCceeecCCCce-EEEEEec
Confidence            999995 689999999999 9999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.87  E-value=8.3e-21  Score=161.01  Aligned_cols=201  Identities=12%  Similarity=0.118  Sum_probs=147.9

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ..+-+...|.+.|..+.|..|++.|++.+. +.++.||+++++..+.... |..-+..+..+-.+ ...+++++     .
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg-~~lv~Sgs-----d  153 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRG-PQLVCSGS-----D  153 (338)
T ss_pred             cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccC-CeEEEecC-----C
Confidence            344455688999999999999998887665 6799999999988665553 33333443322222 33344444     6


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceE-----------
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLC-----------  220 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~-----------  220 (298)
                      |+++||||.++..+++++....+++++.|+.  +....+ .++.|++||++.....+++.+|..++..+           
T Consensus       154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls  233 (338)
T KOG0265|consen  154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS  233 (338)
T ss_pred             CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence            8999999999999988887667888888864  333333 46788888887777777777666555422           


Q ss_pred             -------------------------------------EEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeeccccccee
Q 022387          221 -------------------------------------AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA  262 (298)
Q Consensus       221 -------------------------------------~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~  262 (298)
                                                           ..++.+++..+. +|+.|..+.+||..... +..+.+|.+.|+
T Consensus       234 nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~-ags~dr~vyvwd~~~r~~lyklpGh~gsvn  312 (338)
T KOG0265|consen  234 NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT-AGSADRFVYVWDTTSRRILYKLPGHYGSVN  312 (338)
T ss_pred             ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc-cccccceEEEeecccccEEEEcCCcceeEE
Confidence                                                 233334445555 48999999999998855 558999999999


Q ss_pred             EEEECCCCCEEEEEeCCCCEEEE
Q 022387          263 CFALTQDGQLLATSSTKGTLVRI  285 (298)
Q Consensus       263 ~l~fspdg~~lAt~S~Dgt~IrI  285 (298)
                      +++|+|....|.++|.|++ |.+
T Consensus       313 ~~~Fhp~e~iils~~sdk~-i~l  334 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKT-IYL  334 (338)
T ss_pred             EeeecCCCcEEEEeccCce-eEe
Confidence            9999999999999999999 765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.3e-20  Score=159.96  Aligned_cols=206  Identities=17%  Similarity=0.207  Sum_probs=162.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|.++|.+++|+.||+.+++|+.| .+++||+.+.+.....-  |++.+..+.|....++..++.|+.     |++||
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~~~cl~TGSW-----DKTlK  140 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMNYQCLVTGSW-----DKTLK  140 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee--cccceeEEEEecCCCcceeEeccc-----cccee
Confidence            35678899999999999999988875 58999999986543333  789999999988777666667664     69999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeE-EEEEecc-CCCcceEEEEeCCCCeEEEEecC
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKL-LHQIETI-ANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~-i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      .||.+....+.++..+.+|++...-...+++++ +..|.+|++++... .+.+... .-.+.++++..+.++.  |+ |+
T Consensus       141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--al-Gs  217 (347)
T KOG0647|consen  141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--AL-GS  217 (347)
T ss_pred             ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--Ee-ee
Confidence            999999999999999999999998777777776 57999999965432 2222221 1234567777777655  43 89


Q ss_pred             CCceEEEEEcCC---cceEeeccccc---------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYAS---KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~---~~~~~~~~H~~---------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+|.+.|..+..   +.-.+|++|..         +|++|+|+|....|||+|.||+ +-.||-.....|+++
T Consensus       218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTS  289 (347)
T ss_pred             ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhcc
Confidence            999999965554   33448899973         5899999999999999999999 999998887777664

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.87  E-value=3.1e-20  Score=165.64  Aligned_cols=200  Identities=15%  Similarity=0.183  Sum_probs=158.8

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce------------------------------EEEEeee--
Q 022387           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE------------------------------IFRRDFE--  125 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~------------------------------~~~~~~~--  125 (298)
                      .....|+.+|.++.|+.+|+||++|+.|+ +.+||..++..                              ++...+.  
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence            34467899999999999999999999855 77998743221                              1111111  


Q ss_pred             --------cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC----------
Q 022387          126 --------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD----------  186 (298)
Q Consensus       126 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~----------  186 (298)
                              |.+.+.++.+.+.+.+|+.++       +|+|+|||......+...+..+ ..|+.+.|+|.          
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~S-------dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~  422 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCS-------DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN  422 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEec-------CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence                    556677777777788888877       7899999998887777766644 47888888763          


Q ss_pred             -eEE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEE
Q 022387          187 -RII-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACF  264 (298)
Q Consensus       187 -~l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l  264 (298)
                       .++ ++.+++|++||+..+.++++|..|..|+..++|++++  .++| +|+.||.|.||+.++..+..-..-+..|..|
T Consensus       423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g--~ylA-sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel  499 (524)
T KOG0273|consen  423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG--RYLA-SGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL  499 (524)
T ss_pred             ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC--cEEE-ecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence             233 3447899999999999999999999998888888765  9999 5999999999999988766544556779999


Q ss_pred             EECCCCCEEEEEeCCCCEEEEEECC
Q 022387          265 ALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       265 ~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|+.+|.+|+.+-.|+. +.|-|++
T Consensus       500 ~Wn~~G~kl~~~~sd~~-vcvldlr  523 (524)
T KOG0273|consen  500 CWNAAGDKLGACASDGS-VCVLDLR  523 (524)
T ss_pred             EEcCCCCEEEEEecCCC-ceEEEec
Confidence            99999999999988999 9999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.87  E-value=6.9e-22  Score=170.52  Aligned_cols=193  Identities=11%  Similarity=0.250  Sum_probs=152.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      +..+|.+.|.|+.|.  .+.|++|+. .+++|||+++++.+-+..   .+.-.++.+.|..+++++++       .|.++
T Consensus       232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tli---hHceaVLhlrf~ng~mvtcS-------kDrsi  299 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI---HHCEAVLHLRFSNGYMVTCS-------KDRSI  299 (499)
T ss_pred             hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHh---hhcceeEEEEEeCCEEEEec-------CCcee
Confidence            346888899998876  458999986 558999999988765554   23445666777888888888       78999


Q ss_pred             EEEeCCCCcEEE---Ee-ecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          159 MIWDDHQSRCIG---EL-SFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       159 ~iWD~~~~~~~~---~~-~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ++||+.....+.   -+ .+...|..+.|+.+.++.+. +.+|++|++.+.+.++++.+|...+.+..+.    +.+++ 
T Consensus       300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr----~rlvV-  374 (499)
T KOG0281|consen  300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR----DRLVV-  374 (499)
T ss_pred             EEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc----CeEEE-
Confidence            999987754221   12 23457888999998887775 5799999999999999999987655444432    25555 


Q ss_pred             ecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +|+.|.+|++||...+. +..+.+|..-|+||.|  |.+.+++|..||+ |||||+..+.
T Consensus       375 SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aal  431 (499)
T KOG0281|consen  375 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAAL  431 (499)
T ss_pred             ecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEeccccc
Confidence            79999999999998775 4589999999999999  5589999999999 9999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=4.8e-21  Score=178.55  Aligned_cols=206  Identities=11%  Similarity=0.159  Sum_probs=163.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceE----EEEeeecCCceEEEEEecCC-CEEEEEeCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQY  153 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  153 (298)
                      +-.+|...|.++....+|.+||+|+. +.+++|.++.....    ..... |.+.++.++++..+ ..+++++       
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS-------  431 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVS-------  431 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEec-------
Confidence            55789999999997788899999997 55899977433211    11111 67888888885544 3455555       


Q ss_pred             CCCeEEEEeCCCCc-----EEEE-----eecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceE
Q 022387          154 PLNKVMIWDDHQSR-----CIGE-----LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLC  220 (298)
Q Consensus       154 ~d~~v~iWD~~~~~-----~~~~-----~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~  220 (298)
                      .|+++++|++...+     .+..     ..|...|.+++.+++.-++++   |.+.+||++.+.....++.+|..-+.++
T Consensus       432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V  511 (775)
T KOG0319|consen  432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV  511 (775)
T ss_pred             CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence            78999999987622     1111     124568999999986555554   4799999999999999999998888888


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .|++..  +.+| ++|.|++|+||.+.+.. +++|.+|+..|-.+.|-.+|+.|+|++.||- ||||++.++.|+.++
T Consensus       512 ~Fs~~d--q~la-T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  512 SFSKND--QLLA-TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTL  585 (775)
T ss_pred             Eecccc--ceeE-eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhh
Confidence            887754  7888 59999999999998754 6799999999999999999999999999998 999999999998764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.87  E-value=3e-22  Score=172.78  Aligned_cols=190  Identities=14%  Similarity=0.288  Sum_probs=148.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..|+|+.+  |...+++|.. ++|+|||..+..+...... |.+.+.  ++.++...  +++|+     .|.+|+|||++
T Consensus       198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVL--CLqyd~rv--iisGS-----SDsTvrvWDv~  265 (499)
T KOG0281|consen  198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVL--CLQYDERV--IVSGS-----SDSTVRVWDVN  265 (499)
T ss_pred             CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhc-CCCcEE--eeeccceE--EEecC-----CCceEEEEecc
Confidence            37888876  4567899987 6699999988777655542 444444  44455543  33333     67999999999


Q ss_pred             CCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCC---CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          165 QSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~---~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      +++++.++-++ ..|..+.|+...++.+. +.+|.+||+..   ..+.+.+.+|...+.++.|+.    .+++ +++.|.
T Consensus       266 tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----kyIV-sASgDR  340 (499)
T KOG0281|consen  266 TGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIV-SASGDR  340 (499)
T ss_pred             CCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----ceEE-EecCCc
Confidence            99999887665 58999999999998887 47999999954   344456677877777776643    5666 689999


Q ss_pred             eEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       240 ~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      +|++|+..+.. +.++.+|...|.|+.+  .|+++++||.|.+ |||||+..|+|++
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLR  394 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLR  394 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHH
Confidence            99999998866 4589999999999987  6899999999999 9999999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.5e-21  Score=173.86  Aligned_cols=203  Identities=11%  Similarity=0.151  Sum_probs=167.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      +..+|.+|.|+|.--++.++--.| +.|||.++...+...+. .+-+++...+..+.+.+++.+       +|..|||++
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVfn   83 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGS-------DDMQIRVFN   83 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEec-------CCceEEEEe
Confidence            456899999999999988888655 88999999887666655 356677777777777777766       789999999


Q ss_pred             CCCCcEEEEeecCC-ceEEEEEeCCeEEEE--EC-CeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          163 DHQSRCIGELSFRS-EVRSVKLRRDRIIVV--LE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       163 ~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~--~~-~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      ..+++.+..|.-|+ -+.+++.||..-.+.  .| =+|++||.. ...+.++|.+|.+.+..++|.|. |...+| |++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFa-S~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFA-SASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-Ccccee-eeec
Confidence            99999999998665 689999999754444  34 399999995 56788899999998888888875 456777 6999


Q ss_pred             CceEEEEEcCCcc-eEeecccccceeEEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg--~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |++|+||.+.... ..++.+|...|+||+|-+-|  .+|+||++|.+ |||||+++.+|++++
T Consensus       162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTL  223 (794)
T ss_pred             cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHh
Confidence            9999999998754 55999999999999998644  79999999999 999999999998653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=166.68  Aligned_cols=204  Identities=10%  Similarity=0.165  Sum_probs=158.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ....+.++...+....+++|+.| .+.++|....+.+...+   ++...+..+.+++....+..++     .|..|+||.
T Consensus       218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~---Gh~kki~~v~~~~~~~~v~~aS-----ad~~i~vws  289 (506)
T KOG0289|consen  218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK---GHTKKITSVKFHKDLDTVITAS-----ADEIIRVWS  289 (506)
T ss_pred             CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc---CcceEEEEEEeccchhheeecC-----CcceEEeec
Confidence            34478888888887899999986 68899999888776666   4555555554544443333332     678999999


Q ss_pred             CCCCcEEEEe-ecCCceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          163 DHQSRCIGEL-SFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       163 ~~~~~~~~~~-~~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      +-...+.... .+..+|..+..|+  ++++.+. +++..+.|++++..+.........+...+..++||+.+++ +|..|
T Consensus       290 ~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg-tgt~d  368 (506)
T KOG0289|consen  290 VPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG-TGTPD  368 (506)
T ss_pred             cccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe-ccCCC
Confidence            8765544333 4556899888876  5666665 4899999999998877665544556666667777879888 59999


Q ss_pred             ceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          239 GQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       239 g~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.|+|||++... ...|.+|+++|..|+|+.+|.|||++.+|+. |++||++.-+.+++|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTI  427 (506)
T ss_pred             ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhccccee
Confidence            999999998765 4589999999999999999999999999999 999999988877765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=4.9e-21  Score=174.99  Aligned_cols=225  Identities=20%  Similarity=0.279  Sum_probs=166.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEE
Q 022387           55 PDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVV  133 (298)
Q Consensus        55 p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~  133 (298)
                      |.+..|.+|.+.-...++  ...+....+|.+.|++|+..|.|.+||+|+++| +|||.+.+++++.+..+  .+.|.++
T Consensus       372 pe~LiPkLPsp~dLrPFP--t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~v  447 (733)
T KOG0650|consen  372 PESLIPKLPSPKDLRPFP--TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSV  447 (733)
T ss_pred             HHHhcccCCChhhcCCCc--ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEE
Confidence            555666666544444333  345566688999999999999999999999977 88999999999998888  7889999


Q ss_pred             EEecCCC--EEEEEeCCCC----C---------------------CCCCCeEEEEeCCC---Cc--EEEEeecCCce---
Q 022387          134 EMLFRCN--ILALVGGGPD----P---------------------QYPLNKVMIWDDHQ---SR--CIGELSFRSEV---  178 (298)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~----~---------------------~~~d~~v~iWD~~~---~~--~~~~~~~~~~v---  178 (298)
                      .|.+.++  .+|++.+...    .                     ...+.++..|.-..   ++  .-..+.+...|   
T Consensus       448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v  527 (733)
T KOG0650|consen  448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV  527 (733)
T ss_pred             EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence            9987654  3444433220    0                     11245566775331   11  11122333333   


Q ss_pred             ------------------------------------------EEEEEeC--CeEEEEECCeEEEEEcCCCeEEEEEeccC
Q 022387          179 ------------------------------------------RSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIA  214 (298)
Q Consensus       179 ------------------------------------------~~v~~~~--~~l~v~~~~~I~iwd~~~~~~i~~~~~~~  214 (298)
                                                                .++.||+  -.+++++...|+|||+....+++++.+..
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS  607 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC
Confidence                                                      3444443  27888889999999998888888888888


Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      ..+..+++++.+|+.++   |+.|+.++++|+..  ++.++++-|..+|++|+|++.-.+||+||.||+ +.||.
T Consensus       608 kwiS~msihp~GDnli~---gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfh  678 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLIL---GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFH  678 (733)
T ss_pred             eeeeeeeecCCCCeEEE---ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEe
Confidence            88889999998875443   79999999988765  477899999999999999999999999999999 88885

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.6e-19  Score=146.84  Aligned_cols=204  Identities=14%  Similarity=0.173  Sum_probs=154.8

Q ss_pred             CCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEE--EEcCCCc---eEEEEeeecCCceEEEEEecC----CCEEEEEe
Q 022387           77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRI--YNCDPFR---EIFRRDFERGGGIGVVEMLFR----CNILALVG  146 (298)
Q Consensus        77 ~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~v--w~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  146 (298)
                      .......|++.|+|++|+|+|++||+|++ +.|++  |+.++.+   ....... |++.+.-+++.-+    +..++.++
T Consensus        81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~g  159 (350)
T KOG0641|consen   81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAG  159 (350)
T ss_pred             EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecC
Confidence            34455678899999999999999999998 45775  4555432   2223333 6888887777533    23344433


Q ss_pred             CCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEE-EeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-----cc
Q 022387          147 GGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVK-LRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-----KG  218 (298)
Q Consensus       147 ~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~-~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-----~~  218 (298)
                      .      .|.+|.+-|..+++..+.+..+ +.|.++. |+.-.++... +.+|++||++-..++.++....+.     ..
T Consensus       160 a------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  160 A------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             C------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence            3      3688889999999988888765 5788876 4444444444 479999999988888887653322     23


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +.+++.+|.+.+|| +|..|..+.+||+....+ ..+..|+..|+|+.|||...||.|+|.|.. ||+=|++
T Consensus       234 vaav~vdpsgrll~-sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq  303 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLA-SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ  303 (350)
T ss_pred             eEEEEECCCcceee-eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc
Confidence            55777788889998 699999999999987764 579999999999999999999999999999 9999976

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=1.5e-20  Score=175.28  Aligned_cols=202  Identities=11%  Similarity=0.180  Sum_probs=166.0

Q ss_pred             CcccCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCc-----eEEEEe---eecCCceEEEEEecCCCEEEEEeC
Q 022387           78 ESTSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR-----EIFRRD---FERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      +....+|.+.|.+|+++..| .+|++++.|. +++|++...+     ..+...   ..|++++.+++..++..++|+++ 
T Consensus       404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S-  482 (775)
T KOG0319|consen  404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS-  482 (775)
T ss_pred             hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc-
Confidence            33447888999999998766 5899998865 8899886521     111111   11899999999999998888888 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387          148 GPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s  223 (298)
                            .|++.+||++...+....+..|. .|.+|.|++.  .++.+. |.+|+||.+.++.++++|.+|...+.-+.|-
T Consensus       483 ------qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~  556 (775)
T KOG0319|consen  483 ------QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI  556 (775)
T ss_pred             ------cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee
Confidence                  89999999999888888888775 7999999985  444443 5799999999999999999999888877777


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .++  ..|+ |+..||.+++|+.+++. +.++.+|+..|++++-+|.+..|+||+.||. |.+|.=-|
T Consensus       557 ~~~--~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wkD~T  620 (775)
T KOG0319|consen  557 RNG--KQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWKDVT  620 (775)
T ss_pred             eCC--cEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEeecCc
Confidence            654  5565 68999999999999875 5699999999999999999999999999999 98997443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.86  E-value=6.4e-20  Score=159.16  Aligned_cols=209  Identities=19%  Similarity=0.224  Sum_probs=158.5

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      .....|+..|+++.||.||.|||+|.-+| ++||.+.++........ ....+..+.|++....++..+       .||.
T Consensus       100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~illAG~-------~DGs  171 (399)
T KOG0296|consen  100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILLAGS-------TDGS  171 (399)
T ss_pred             eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEEeec-------CCCc
Confidence            33468899999999999999999998766 78999999887655532 256788888888776666555       6899


Q ss_pred             EEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCC---------CcceE----
Q 022387          158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIAN---------PKGLC----  220 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~---------~~~~~----  220 (298)
                      +-.|.+.++...+.+..+ .++.+-.|.++  +++.+. +++|++||..++++++++....+         ..+..    
T Consensus       172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g  251 (399)
T KOG0296|consen  172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG  251 (399)
T ss_pred             EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence            999999986655566554 47888777764  444443 68999999999999888762110         00000    


Q ss_pred             ----------------EEE-----------------------eCCCCeEEEEecCCCceEEEEEcCCcceEeecccccce
Q 022387          221 ----------------AVS-----------------------QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (298)
Q Consensus       221 ----------------~~s-----------------------~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V  261 (298)
                                      ..+                       ....-.+.|+ |+-||+|.|||+....+...-.|...|
T Consensus       252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~-G~vdG~i~iyD~a~~~~R~~c~he~~V  330 (399)
T KOG0296|consen  252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC-GSVDGTIAIYDLAASTLRHICEHEDGV  330 (399)
T ss_pred             cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc-ccccceEEEEecccchhheeccCCCce
Confidence                            000                       1111234443 888999999999988888888899999


Q ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       262 ~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      ..+.|-+ -.+|+|++.||+ ||+||.++|+++++|.
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~  365 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYT  365 (399)
T ss_pred             EEEEEcC-cchheeeccCce-EEeeeccccceEEEEe
Confidence            9999999 788999999999 9999999999999884

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=6.4e-20  Score=164.21  Aligned_cols=199  Identities=17%  Similarity=0.259  Sum_probs=153.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..|+++.|-.||++||+|.+-| ++|||+.+...+..... |...+..+.+++..+.++..+ +     +|+.+++||+.
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~-s-----Dd~v~k~~d~s  141 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSG-S-----DDKVVKYWDLS  141 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEec-C-----CCceEEEEEcC
Confidence            4799999999999999999966 78999766433333322 688888998888777665544 3     57899999999


Q ss_pred             CCcEEEEeecCC-ceEEEEEeCC--eEEEEE--CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          165 QSRCIGELSFRS-EVRSVKLRRD--RIIVVL--EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       165 ~~~~~~~~~~~~-~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      +.....++..+. -|.+.++++.  .+++.+  |+.|++||++.. ..+.++. |..|+..+.+-+.+  .++|.+|  .
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg--s~iasAg--G  216 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG--SLIASAG--G  216 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC--CEEEEcC--C
Confidence            988765666654 6899999863  455544  699999999876 5666655 56777777776654  6777433  3


Q ss_pred             ceEEEEEcCCc-ceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          239 GQVRVEHYASK-RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       239 g~v~i~~~~~~-~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..|+|||+..+ ++. .+..|...|+|+++..++..|.|||-|+. |||||+.+-|.++.+
T Consensus       217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSW  276 (487)
T ss_pred             CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEee
Confidence            58999999844 443 44459999999999999999999999999 999999998888764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=6.6e-20  Score=156.07  Aligned_cols=202  Identities=17%  Similarity=0.251  Sum_probs=154.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|..++.+++|.++.+ +++|+ ++.++.+|+.+........  |+..+.+++.....+.++.++       =|++|++
T Consensus        51 ~~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igt--h~~~i~ci~~~~~~~~vIsgs-------WD~~ik~  120 (323)
T KOG1036|consen   51 FKHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGT--HDEGIRCIEYSYEVGCVISGS-------WDKTIKF  120 (323)
T ss_pred             eecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceeecc--CCCceEEEEeeccCCeEEEcc-------cCccEEE
Confidence            45666999999998665 55555 4559999999987765555  688899998886666555544       3699999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEEEecCC
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      ||.+.......+.....|.++....+.|++++ +..|.+||+++.....+.....  -+..++++-+..  .-+|+ ++.
T Consensus       121 wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~--eGy~~-sSi  197 (323)
T KOG1036|consen  121 WDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG--EGYVV-SSI  197 (323)
T ss_pred             EeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC--CceEE-Eee
Confidence            99998777777777779999999999999966 5799999999876544322211  233455555533  44443 899


Q ss_pred             CceEEEEEcCCc-----ceEeeccccc---------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASK-----RTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~-----~~~~~~~H~~---------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.|.+..++..     +-..|++|..         +|++|+|+|-...||||+.||. |.+||+.+.|.+++|
T Consensus       198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQL  270 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhc
Confidence            999999666543     2337888853         7999999999999999999998 999999999988776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.85  E-value=9.8e-20  Score=151.06  Aligned_cols=181  Identities=18%  Similarity=0.174  Sum_probs=133.0

Q ss_pred             EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc--EEEEeecC
Q 022387           99 CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELSFR  175 (298)
Q Consensus        99 ~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~--~~~~~~~~  175 (298)
                      +||+++- .+||+|...++.+..+... .++.+..+++.++...+|.++        ...||+||++++.  .+.+++.+
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh-~dsqVNrLeiTpdk~~LAaa~--------~qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQH-PDSQVNRLEITPDKKDLAAAG--------NQHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEec-CccceeeEEEcCCcchhhhcc--------CCeeEEEEccCCCCCceeEEecc
Confidence            6888875 6799999999998877765 367788888888888888876        3679999999864  56777766


Q ss_pred             -CceEEEEEeCCeE--EEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC--------------------------
Q 022387          176 -SEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG--------------------------  225 (298)
Q Consensus       176 -~~v~~v~~~~~~l--~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~--------------------------  225 (298)
                       ..|.++.|+.+.-  ..++ ||+++|||++...+.+.++. ..++..+.++++                          
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence             5799999987543  3333 48999999998665554442 344444444433                          


Q ss_pred             ---------------CCCeEEEEecCCCceEEEEEcCCc-------ceEeecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387          226 ---------------VGSLVLVCPGLQKGQVRVEHYASK-------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (298)
Q Consensus       226 ---------------~d~~~la~sGs~dg~v~i~~~~~~-------~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I  283 (298)
                                     +|+.+++. +...|.+.+|++...       ++..+++|++.+..+-||||++||||+|.|.+ +
T Consensus       162 liPe~~~~i~sl~v~~dgsml~a-~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v  239 (311)
T KOG0315|consen  162 LIPEDDTSIQSLTVMPDGSMLAA-ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-V  239 (311)
T ss_pred             cCCCCCcceeeEEEcCCCcEEEE-ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-E
Confidence                           33344442 444455555544321       23468899999999999999999999999999 9


Q ss_pred             EEEECCCC
Q 022387          284 RIFNTLDG  291 (298)
Q Consensus       284 rIWd~~tg  291 (298)
                      |||+.++-
T Consensus       240 ~iwn~~~~  247 (311)
T KOG0315|consen  240 KIWNTDDF  247 (311)
T ss_pred             EEEecCCc
Confidence            99999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.85  E-value=5.8e-20  Score=171.69  Aligned_cols=205  Identities=17%  Similarity=0.214  Sum_probs=162.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee------------------------------------
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE------------------------------------  125 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~------------------------------------  125 (298)
                      .+|++.|++++||.|...+++|+.+.++||+.++.+++.+....                                    
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et  449 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET  449 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence            67899999999999999999999999999999877665544320                                    


Q ss_pred             ---cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC-------C-c-----EEEEeecCCceEEEEEeCCe--
Q 022387          126 ---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-------S-R-----CIGELSFRSEVRSVKLRRDR--  187 (298)
Q Consensus       126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~-------~-~-----~~~~~~~~~~v~~v~~~~~~--  187 (298)
                         |++.+..+...+++..+++++       .|++|++||..-       . +     ..+++++...|.|+.++|+.  
T Consensus       450 i~AHdgaIWsi~~~pD~~g~vT~s-------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  450 IRAHDGAIWSISLSPDNKGFVTGS-------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhccccceeeeeecCCCCceEEec-------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence               233333333334444444444       689999999531       1 1     12456677899999999864  


Q ss_pred             EEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEE
Q 022387          188 IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFA  265 (298)
Q Consensus       188 l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~  265 (298)
                      ++++ .+++|+||-+.+.+..-++.+|.-|+.++.++++.  .+++ +|+.|+.|+||-++.+... .+-+|...|.+|.
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS--kliv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS--KLIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc--CeEE-eccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            3333 37999999999999999999999999999999986  7777 5999999999999988765 8999999999999


Q ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       266 fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |-|+..+|.|+|.|+. ||-||-..-++++++
T Consensus       600 F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  600 FLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKL  630 (888)
T ss_pred             EcccceeEEEecCcce-EEeechhhhhhheee
Confidence            9999999999999999 999998777666554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=7.4e-20  Score=155.05  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=154.2

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCc------------eEEEEeee--cCCceEEEEEecCCCEE
Q 022387           79 STSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR------------EIFRRDFE--RGGGIGVVEMLFRCNIL  142 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~~~  142 (298)
                      .+.+.|++.|+++.+.+ .|+|+.+|+.|| +.|||++...            +...+...  |.-.+..+.|-+-...+
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            34577888999999997 799999999877 6699986432            11111111  33345555554444444


Q ss_pred             EEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC-----eEEEEEC-CeEEEEEcCCCeEEEEEeccCCC
Q 022387          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-----RIIVVLE-QKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       143 ~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-----~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                      .+.+ +     -|+++||||..+-|....|++...|++-++++-     .+++++. -.|++-|+..+..-+++.+|...
T Consensus       117 Ftss-S-----FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  117 FTSS-S-----FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             eecc-c-----ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            4433 1     689999999999999999999998988777652     3444444 59999999999999999998775


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-------------ce---EeecccccceeEEEECCCCCEEEEEeCCC
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-------------RT---KFIMAHDSRIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-------------~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dg  280 (298)
                      +  +++.+.+...++.++|+.||.|++||+...             ..   ++-.+|.+.|+.+||+.||.++++++.|.
T Consensus       191 v--laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  191 V--LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             e--EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            5  555555555777778999999999997521             11   12357889999999999999999999999


Q ss_pred             CEEEEEECCCCcE
Q 022387          281 TLVRIFNTLDGTL  293 (298)
Q Consensus       281 t~IrIWd~~tg~~  293 (298)
                      . +|+|+..+|+-
T Consensus       269 r-~r~wn~~~G~n  280 (397)
T KOG4283|consen  269 R-IRVWNMESGRN  280 (397)
T ss_pred             c-eEEeecccCcc
Confidence            9 99999998853

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=171.88  Aligned_cols=197  Identities=15%  Similarity=0.232  Sum_probs=160.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEE-EeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      +...+.+..|.  +.++++|+. ..+++|+..+...+.. ..- |.+.+..+++....+.++.++       .|+++++|
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS-------~D~t~rvW  276 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGS-------TDKTERVW  276 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEe-------cCCcEEeE
Confidence            45578888888  456777877 5577999999887666 333 677777777766677777776       78999999


Q ss_pred             eCCCCcEEEEeecCC-ceEEEEEeCCeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          162 DDHQSRCIGELSFRS-EVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       162 D~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      |..+++|+..+..+. .|.++...+..+..+ .+.+|++|++.+++.++.+.+|..++.++.+..    .+++ +|+.||
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~----~~lv-sgs~d~  351 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE----PLLV-SGSYDG  351 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC----CEEE-EEecCc
Confidence            999999999999664 667777666666653 478999999999999999998888887777762    5565 599999


Q ss_pred             eEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEec
Q 022387          240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEG  297 (298)
Q Consensus       240 ~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg-~~l~~~  297 (298)
                      +|.+|+....+ ++++.+|...|.++.+... .++.+||.|++ ||+||++++ +|+++|
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTL  409 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhh
Confidence            99999988654 6699999999999988776 89999999999 999999999 888765

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=6.2e-20  Score=173.56  Aligned_cols=203  Identities=18%  Similarity=0.260  Sum_probs=140.0

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc----------------------------e--E-----EE--
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----------------------------E--I-----FR--  121 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~----------------------------~--~-----~~--  121 (298)
                      +...|.+.|.++.||+||+|||+|++|+ |+||.+...+                            .  .     ..  
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            3348889999999999999999999988 5699764300                            0  0     00  


Q ss_pred             ---------------------Eeee-cCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCce
Q 022387          122 ---------------------RDFE-RGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV  178 (298)
Q Consensus       122 ---------------------~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v  178 (298)
                                           .++. |.++  ++.+++..+ .|+.++       .|+|||||++....|+..|.|..-|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~D--ILDlSWSKn~fLLSSS-------MDKTVRLWh~~~~~CL~~F~HndfV  412 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTAD--ILDLSWSKNNFLLSSS-------MDKTVRLWHPGRKECLKVFSHNDFV  412 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchh--heecccccCCeeEecc-------ccccEEeecCCCcceeeEEecCCee
Confidence                                 0000 2222  233333333 334444       7999999999999999999999999


Q ss_pred             EEEEEeC--C-eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--
Q 022387          179 RSVKLRR--D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--  252 (298)
Q Consensus       179 ~~v~~~~--~-~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--  252 (298)
                      +||+|+|  + +++.+ .|++||||+|.+.+.+.-...+ ..+..+++.  |||+..++ |+.+|.+++|+....++.  
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avI-Gt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVI-GTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEE-EEeccEEEEEEccCCeEEEe
Confidence            9999997  3 33333 4799999999887765444433 334444555  45577765 999999999998765432  


Q ss_pred             -ee-------cccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          253 -FI-------MAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       253 -~~-------~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       .+       ..|. .|+.+.|.|.. ..+...|.|.. |||+|.++.++++.|
T Consensus       489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKF  540 (712)
T ss_pred             eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhh
Confidence             11       1233 79999999753 33555567998 999999877766554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.8e-20  Score=152.78  Aligned_cols=203  Identities=15%  Similarity=0.140  Sum_probs=149.9

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEE-cCCeEEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHG-CFAAG-TDHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~-~lasg-s~~gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      .+..-...+..|+|++... .++++ +++.++|||..... .+...+- |..++..+.+....+...+.+ +     =|+
T Consensus        55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~lts-S-----WD~  127 (311)
T KOG0277|consen   55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTS-S-----WDG  127 (311)
T ss_pred             EeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEee-c-----cCC
Confidence            3344556899999998653 44444 45669999964322 2222221 567788888765555444444 3     379


Q ss_pred             eEEEEeCCCCcEEEEeecCC-ceEEEEEeC---CeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          157 KVMIWDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~---~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      +|||||...++.+.++..+. .|+...|++   +.++.+ +++++++||++.......|..|...+.+|.++... ..++
T Consensus       128 TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~-~~vl  206 (311)
T KOG0277|consen  128 TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN-HNVL  206 (311)
T ss_pred             ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC-CcEE
Confidence            99999999999999888764 788899986   445444 46899999996544444488888788888888653 3566


Q ss_pred             EEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCc
Q 022387          232 VCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      + +|+.|+.|++||+.+-+  +..+.+|.-+|+.|+|||- ..+|||+|.|-+ +||||...+.
T Consensus       207 ~-Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~d  268 (311)
T KOG0277|consen  207 A-TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQD  268 (311)
T ss_pred             E-ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccch
Confidence            6 59999999999998643  5588999999999999997 589999999999 9999988553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.1e-19  Score=148.06  Aligned_cols=215  Identities=16%  Similarity=0.163  Sum_probs=164.0

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387           69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      +|++..........+|...|..++.+.|...||+++. +.+.+||+.+++...++.- |.+.+.  .+.|+...-++++|
T Consensus        43 LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVN--tV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   43 LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVN--TVRFNEESSVVASG  119 (307)
T ss_pred             eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc-ccceee--EEEecCcceEEEec
Confidence            5666666666666788889999999999988887765 5578999999988655542 344444  44555555556665


Q ss_pred             CCCCCCCCCeEEEEeCCCC--cEEEEeec-CCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387          148 GPDPQYPLNKVMIWDDHQS--RCIGELSF-RSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~--~~~~~~~~-~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s  223 (298)
                      +     .|.++++||.++.  +.++.+.. ...|.++......++... +|+++.||++.++....+-  .+|+.+++|+
T Consensus       120 s-----fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s  192 (307)
T KOG0316|consen  120 S-----FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFS  192 (307)
T ss_pred             c-----ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEec
Confidence            5     6899999999875  46666654 357899999887777654 7999999999998766554  3578888888


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccc--eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+++ ..||  |+-|+++++-|.++++ +...++|...  =..++++..-..+++||+||. |.+||+..++++-.+
T Consensus       193 ~d~n-c~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~-Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  193 KDGN-CSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK-VYFWDLVDETQISKL  265 (307)
T ss_pred             CCCC-EEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce-EEEEEeccceeeeee
Confidence            8763 4554  7999999998777665 4588999753  455678888899999999999 999999999887554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.84  E-value=3.4e-21  Score=165.02  Aligned_cols=172  Identities=18%  Similarity=0.240  Sum_probs=119.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeE-EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+.++.+-|..|||||+||++|+.||+ .|||.-+++...-....           .                .|+ ...
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-----------A----------------qd~-fMM  261 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-----------A----------------QDN-FMM  261 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh-----------h----------------hcc-eee
Confidence            456678999999999999999999995 59998877542111110           0                000 111


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      -|             ..|.|+.|+++.-.+++   +|.|++|.++++++++.|. .|...+.++.|+.  |+..+. +++
T Consensus       262 md-------------~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiL-S~s  325 (508)
T KOG0275|consen  262 MD-------------DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQIL-SAS  325 (508)
T ss_pred             cc-------------cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc--Ccchhh-ccc
Confidence            11             03455555554322221   3566666666666666665 3444344444444  445555 589


Q ss_pred             CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      .|-+++|.-++.++ ++.+++|++.|+...|.+||.+++++|.||+ ||||+..+++|+.+|.
T Consensus       326 fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  326 FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVWHGKTTECLSTFK  387 (508)
T ss_pred             ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEecCcchhhhhhcc
Confidence            99999998888655 5699999999999999999999999999999 9999999999998873

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1e-19  Score=172.66  Aligned_cols=196  Identities=16%  Similarity=0.208  Sum_probs=158.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      .++|.+++|+|..-+|.++-..| |++||..-+..+.+..- |++++..+.+.+...+++.+|       +|.+|+||+.
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGG-------DDykIkVWnY   80 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGG-------DDYKIKVWNY   80 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecC-------CccEEEEEec
Confidence            35899999999999999999866 78999876655444433 799999999988887665544       6799999999


Q ss_pred             CCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          164 HQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      .+.+|+.++..+ .-|..+.||+..  ++.+. |++|+||+..+.+++..+.+|.+.+.+..|++..  .+++ |+|-|.
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE--DlIV-SaSLDQ  157 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE--DLIV-SASLDQ  157 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc--ceEE-Eecccc
Confidence            999998887665 468889999864  44444 4799999999999999999998877666666653  5555 799999


Q ss_pred             eEEEEEcCC----------------------------cc-eE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          240 QVRVEHYAS----------------------------KR-TK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       240 ~v~i~~~~~----------------------------~~-~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|+|||...                            .. ++ .+.+|+..|+-++|+|.-.+|+||++|+. ||+|.+.
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrmn  236 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMN  236 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEec
Confidence            999999651                            00 12 57899999999999999999999999998 9999987


Q ss_pred             CCc
Q 022387          290 DGT  292 (298)
Q Consensus       290 tg~  292 (298)
                      .-+
T Consensus       237 etK  239 (1202)
T KOG0292|consen  237 ETK  239 (1202)
T ss_pred             ccc
Confidence            544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=5.6e-18  Score=144.83  Aligned_cols=201  Identities=10%  Similarity=0.142  Sum_probs=137.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ...|.++.|+.+|.+|++.++ |.++|||+..++.+.+... ++.++..+++....+.++.++..     .|.+||..++
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLsl   87 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLSL   87 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCC-----CCCceEEEEe
Confidence            458999999999999998776 6899999999887666654 35577788887777766666543     3577888888


Q ss_pred             CCCcEEEEeecCC-ceEEEEEeCC---eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          164 HQSRCIGELSFRS-EVRSVKLRRD---RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       164 ~~~~~~~~~~~~~-~v~~v~~~~~---~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      .+.+.++.+..|. .|..+..+|.   ++..+.|++|++||++..++..-+.....  .++++  ||+|.++|+ |...+
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~Af--Dp~GLifA~-~~~~~  162 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAF--DPEGLIFAL-ANGSE  162 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeE--CCCCcEEEE-ecCCC
Confidence            8888888887664 6777877762   23333467888888876665544443222  22333  344456654 44444


Q ss_pred             eEEEEEcC------------------------------------------------CcceEeecccccc---eeEEEECC
Q 022387          240 QVRVEHYA------------------------------------------------SKRTKFIMAHDSR---IACFALTQ  268 (298)
Q Consensus       240 ~v~i~~~~------------------------------------------------~~~~~~~~~H~~~---V~~l~fsp  268 (298)
                      .|+++|++                                                .....++..|...   --..+|+|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            66666532                                                1112233333222   24668999


Q ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ||+++.+|+.||+ |.||++++|+.+..+
T Consensus       243 ds~Fvl~gs~dg~-i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  243 DSKFVLSGSDDGT-IHVWNLETGKKVAVL  270 (311)
T ss_pred             CCcEEEEecCCCc-EEEEEcCCCcEeeEe
Confidence            9999999999999 999999999987654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.83  E-value=1.9e-18  Score=156.19  Aligned_cols=198  Identities=18%  Similarity=0.204  Sum_probs=162.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      +.|..-|+|+.|+|||+++|+.+.| .+.+||-.+++.+...+-  .|.+++..+.|++++..+++++       .|+++
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-------aDkt~  259 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-------ADKTI  259 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-------CCceE
Confidence            5666799999999999999987764 488999999888766652  2889999999999999999999       78999


Q ss_pred             EEEeCCCCcEEEEeecCCce----EEEEEeCCeEE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          159 MIWDDHQSRCIGELSFRSEV----RSVKLRRDRII-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v----~~v~~~~~~l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ||||+.+..++.++.....|    ..+.|..+.++ +..+|.|.+++..+...++.+.+|...+.+..+++++  .+|. 
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~-  336 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG--KTIY-  336 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC--CEEE-
Confidence            99999999999998876532    23334455555 4567999999999999999999999888777777765  6666 


Q ss_pred             ecCCCceEEEEEcCCcceEee--cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          234 PGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~--~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +|+.||.|.-|+......-.+  +.|+..|.+|+-+..+. +.|.|+|.+ +|+.++..+
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~-l~~~~~~~~  394 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDT-LRVISLKDN  394 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEecCCe-EEEEecccC
Confidence            699999999999987765544  78999999999887665 667789999 999987543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.83  E-value=8.2e-19  Score=158.16  Aligned_cols=200  Identities=14%  Similarity=0.227  Sum_probs=141.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEE--EEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIF--RRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ..|...|.++++.|.|-.|++|+- -.+++||..-.....  -+.+.  ..+.+..+.++..++.+++++|.       .
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-------a  236 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-------A  236 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-------c
Confidence            345568999999999999999996 558999985432110  11111  46778899999988888887754       5


Q ss_pred             eEEEEeCCCCcEEEE---------ee----cCCceEEEEEeCC---eEEE-EECCeEEEEEcCCCe-EEEEEecc-----
Q 022387          157 KVMIWDDHQSRCIGE---------LS----FRSEVRSVKLRRD---RIIV-VLEQKIFVYNFADLK-LLHQIETI-----  213 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~---------~~----~~~~v~~v~~~~~---~l~v-~~~~~I~iwd~~~~~-~i~~~~~~-----  213 (298)
                      ..+|+|..-.+.+..         +.    |-..+.+.+||++   .++. +.++++||||+.+.+ ....|++.     
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            688888654332221         11    1235677889874   3444 457999999996543 33334331     


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .-++.+|++++  |+.+|| +|-.||.|.+|+.....    ...-++|..  .|+||+||+||++|+|-|.|++ +||||
T Consensus       317 Rv~~tsC~~nr--dg~~iA-agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWD  392 (641)
T KOG0772|consen  317 RVPVTSCAWNR--DGKLIA-AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWD  392 (641)
T ss_pred             ccCceeeecCC--Ccchhh-hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeee
Confidence            12345566555  558888 49999999999975432    335678988  8999999999999999999999 99999


Q ss_pred             CCCCc
Q 022387          288 TLDGT  292 (298)
Q Consensus       288 ~~tg~  292 (298)
                      ++.-+
T Consensus       393 Lrq~k  397 (641)
T KOG0772|consen  393 LRQFK  397 (641)
T ss_pred             ccccc
Confidence            99743

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=159.10  Aligned_cols=203  Identities=16%  Similarity=0.244  Sum_probs=152.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+..++|+.+.|.++++++++++. +.+++|+++..+...+... |...+..+.+......  +++|+     .|.+||+
T Consensus       216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~--vVsgs-----~DRtiK~  287 (459)
T KOG0288|consen  216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSR--VVSGS-----ADRTIKL  287 (459)
T ss_pred             hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhccccc--eeecc-----ccchhhh
Confidence            344568999999999997666665 5589999998887666654 5666666665433332  34433     6899999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      ||+++..|..++-..+.+..+..+...++.. .+++|++||++...+..++..+. .+.++.+++++  .-+. +.+-|.
T Consensus       288 WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g--~~lL-sssRDd  363 (459)
T KOG0288|consen  288 WDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG--LELL-SSSRDD  363 (459)
T ss_pred             hhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC--eEEe-eecCCC
Confidence            9999999998887777777777764333333 36899999999999998888765 45666666654  5444 358899


Q ss_pred             eEEEEEcCCcceE-eecc----cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          240 QVRVEHYASKRTK-FIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       240 ~v~i~~~~~~~~~-~~~~----H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+.+.|..+..+. .+.+    -...++.+.|||++.|+|+||.||. |+||++.+||+.+..
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVL  425 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEe
Confidence            9999998877654 3332    1234999999999999999999999 999999999987643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.3e-19  Score=156.77  Aligned_cols=201  Identities=14%  Similarity=0.192  Sum_probs=153.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      -+++|.+++-+|+|.||+.|+..+ +.+|.+.++..+..+.- |-..+.++.++-++..+++++       .||.|.+|+
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~  151 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGSHIITGS-------KDGAVLVWL  151 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCcEEEecC-------CCccEEEEE
Confidence            456899999999999999998755 88999999987666543 778899999888888777766       789999998


Q ss_pred             CCC---------CcEEEEeecCC-ceEEEEEeCC----eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387          163 DHQ---------SRCIGELSFRS-EVRSVKLRRD----RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       163 ~~~---------~~~~~~~~~~~-~v~~v~~~~~----~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      +..         -..+..+..|. +|..+.....    +++.+ .|.++++||+..+.++.++... .+..++++.+.. 
T Consensus       152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae-  229 (476)
T KOG0646|consen  152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAE-  229 (476)
T ss_pred             EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccc-
Confidence            532         23444555444 6777766432    44444 4689999999999988887643 335566666553 


Q ss_pred             CeEEEEecCCCceEEEEEcCC-----------------cceEeeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          228 SLVLVCPGLQKGQVRVEHYAS-----------------KRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~-----------------~~~~~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                       ..+.+ |+.+|.|.+-++..                 .+...+.+|..  +|+|+++|-||.+|++|+.||+ |.|||+
T Consensus       230 -~~~yi-Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi  306 (476)
T KOG0646|consen  230 -RVVYI-GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDI  306 (476)
T ss_pred             -cEEEe-cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEec
Confidence             44443 99999999955431                 12347889988  9999999999999999999999 999999


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      .+.+|+++.
T Consensus       307 ~S~Q~iRtl  315 (476)
T KOG0646|consen  307 YSKQCIRTL  315 (476)
T ss_pred             chHHHHHHH
Confidence            999988763

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=5.1e-19  Score=163.06  Aligned_cols=196  Identities=17%  Similarity=0.224  Sum_probs=150.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      +..|+++.|+++|.+||+|..+| +.|||....+........|...+++++|.  ...+...+       .++.|.++|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs-------r~~~I~~~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS-------RDGKILNHDV  287 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec-------CCCcEEEEEE
Confidence            78999999999999999999977 67999988776555543245566666664  43333333       5799999999


Q ss_pred             CCCcEEEE-ee-cCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          164 HQSRCIGE-LS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       164 ~~~~~~~~-~~-~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      +..+.+.. +. +.+.|..+.|+++....+.   |+.+.|||....+++.++..|...+..++++|...+.+-...|+.|
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            98765544 54 4468999999886544443   5799999998888999999998888888888876543333335668


Q ss_pred             ceEEEEEcC--------------------------------------------CcceEeecccccceeEEEECCCCCEEE
Q 022387          239 GQVRVEHYA--------------------------------------------SKRTKFIMAHDSRIACFALTQDGQLLA  274 (298)
Q Consensus       239 g~v~i~~~~--------------------------------------------~~~~~~~~~H~~~V~~l~fspdg~~lA  274 (298)
                      +.|++|+..                                            .+.+..+.+|...|-.+++||||..++
T Consensus       368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~  447 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV  447 (484)
T ss_pred             cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence            888888732                                            112336789999999999999999999


Q ss_pred             EEeCCCCEEEEEECCC
Q 022387          275 TSSTKGTLVRIFNTLD  290 (298)
Q Consensus       275 t~S~Dgt~IrIWd~~t  290 (298)
                      ||+.|.+ +|+|++-.
T Consensus       448 t~a~DET-lrfw~~f~  462 (484)
T KOG0305|consen  448 TGAADET-LRFWNLFD  462 (484)
T ss_pred             EecccCc-EEeccccC
Confidence            9999999 99999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.82  E-value=1.3e-18  Score=150.85  Aligned_cols=195  Identities=11%  Similarity=0.157  Sum_probs=155.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ++|-+.|+|++.+|.-+.|++|+.|. +||||+.+...++...- |...+..+.+.+....+++++       .|.+|++
T Consensus       232 hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpqvit~S-------~D~tvrl  303 (460)
T KOG0285|consen  232 HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQVITGS-------HDSTVRL  303 (460)
T ss_pred             ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCceEEec-------CCceEEE
Confidence            67778999999999999999999865 78999999888777764 566777776655455556655       7899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCCeEEEE--ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~--~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      ||++.++.+.++.++ ..|.+++.||+....+  ..+.|+.|++..+..+..+..|...+..+++..|  +.++  +|++
T Consensus       304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD--~v~~--~G~d  379 (460)
T KOG0285|consen  304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD--GVLV--SGGD  379 (460)
T ss_pred             eeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccC--ceEE--EcCC
Confidence            999999988887766 4899999998755544  4479999999999998888888777777776655  3555  4999


Q ss_pred             CceEEEEEcCCcceE------eecc---cccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          238 KGQVRVEHYASKRTK------FIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       238 dg~v~i~~~~~~~~~------~~~~---H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|.+..||++.+.-.      ...+   -...|.+.||...|..|+||..|++ |++|.-.
T Consensus       380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt-Ik~~keD  439 (460)
T KOG0285|consen  380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT-IKMYKED  439 (460)
T ss_pred             ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc-eEEEecc
Confidence            999999999875322      1112   2356999999999999999999999 9999754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=4e-18  Score=145.66  Aligned_cols=196  Identities=17%  Similarity=0.262  Sum_probs=151.8

Q ss_pred             CCCCCCeEEEEEcCCCC--EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~--~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|.+.|+++.|.++-.  .|.+|++|| |.+|+...-..+..... |.+.+..+.+.+.+.+-..++       .|+.+
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~KLALsVg-------~D~~l  151 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSGKLALSVG-------GDQVL  151 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCCceEEEEc-------CCcee
Confidence            35667999999999876  899999977 77999988766655554 677788888887776555555       47999


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ++||+-+|+.-..++.......+.|.+  +++++...+.|-+|-+.+.+.+..+.-   +....++-+... ..|++ |.
T Consensus       152 r~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l~~-~~L~v-G~  226 (362)
T KOG0294|consen  152 RTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN---PKRILCATFLDG-SELLV-GG  226 (362)
T ss_pred             eeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc---cccceeeeecCC-ceEEE-ec
Confidence            999999988766666665555577765  578888889999999987776655442   333344444433 45553 89


Q ss_pred             CCceEEEEEcCC-cceEeecccccceeEEEE--CCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          237 QKGQVRVEHYAS-KRTKFIMAHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       237 ~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~f--spdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      .|+.|.+||.+. .++..+.+|...|-.|.+  .|++.||+|+|.||. |+|||++..
T Consensus       227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~-I~vWd~~~~  283 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF-IKVWDIDME  283 (362)
T ss_pred             CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce-EEEEEcccc
Confidence            999999999885 456689999999999995  488999999999999 999999876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.5e-19  Score=165.26  Aligned_cols=198  Identities=14%  Similarity=0.283  Sum_probs=140.2

Q ss_pred             EEEEc-CCCCEEEEEcCCe-EEEEEcCCCceE----EEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           90 HISFN-QDHGCFAAGTDHG-FRIYNCDPFREI----FRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        90 ~v~fs-~dg~~lasgs~~g-i~vw~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      .+..+ |.++||.+|+.|| |++|+.......    +...+. |..-+.-+..+.+++.++.++       .|-+|++|+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~  101 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------SDTTVKVWN  101 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------CCceEEEee
Confidence            33444 4677899999988 679988554321    111111 333334444556677777777       789999999


Q ss_pred             CCCC--cEEEEeecC-CceEEEEE-eCCeEEEEE---CCeEEEEEcCCC--eEEEEEe---------ccCCCcceEEEEe
Q 022387          163 DHQS--RCIGELSFR-SEVRSVKL-RRDRIIVVL---EQKIFVYNFADL--KLLHQIE---------TIANPKGLCAVSQ  224 (298)
Q Consensus       163 ~~~~--~~~~~~~~~-~~v~~v~~-~~~~l~v~~---~~~I~iwd~~~~--~~i~~~~---------~~~~~~~~~~~s~  224 (298)
                      ...+  -++.++..| .-|.|++. -.+..++++   ++.|++||++.+  +.+.++.         ++..  .+.+++.
T Consensus       102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~--siYSLA~  179 (735)
T KOG0308|consen  102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD--SIYSLAM  179 (735)
T ss_pred             cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc--ceeeeec
Confidence            9887  455566544 45888887 444444433   579999999876  3333332         2222  2344555


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      .+.+.+++ +|+..+.+++||-.+. ++..+++|+..|++|-.+.||+.+.|+|.||+ |||||+.-.+|+++|.
T Consensus       180 N~t~t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  180 NQTGTIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYI  252 (735)
T ss_pred             CCcceEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEE
Confidence            55445666 7999999999998764 56688999999999999999999999999999 9999999999999873

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.9e-18  Score=147.94  Aligned_cols=198  Identities=18%  Similarity=0.205  Sum_probs=137.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce----EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ...+|...|++++|+.||++||+.++|+ ||||+++....    ..+... ..+....+.+.++...+++....      
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~------  153 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKR------  153 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEcc------
Confidence            3467888999999999999999998855 88999876432    112222 23355667777887776665532      


Q ss_pred             CCeEEEEeCCCCc---EEE------EeecC----CceEEEEE--eCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc
Q 022387          155 LNKVMIWDDHQSR---CIG------ELSFR----SEVRSVKL--RRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG  218 (298)
Q Consensus       155 d~~v~iWD~~~~~---~~~------~~~~~----~~v~~v~~--~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~  218 (298)
                      -.++++|-..+.+   .-.      .+.++    -.+..+-.  +...++.+. +..|.+|++. ++.+.++.+......
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~  232 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY  232 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence            3668888654321   111      11121    12333333  334555554 4699999998 888888887665566


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCC---------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~---------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      -++++|++  .++|+ +...-.|.+|..-.         +++..+++|.++|...|||++...++|.|.||+ +||||+.
T Consensus       233 ~aavSP~G--RFia~-~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtd  308 (420)
T KOG2096|consen  233 DAAVSPDG--RFIAV-SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTD  308 (420)
T ss_pred             ceeeCCCC--cEEEE-ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeecc
Confidence            67777765  88886 45556788887421         234589999999999999999999999999999 9999976

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.80  E-value=5.6e-18  Score=141.92  Aligned_cols=216  Identities=13%  Similarity=0.145  Sum_probs=161.1

Q ss_pred             CCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEE
Q 022387           67 PNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV  145 (298)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (298)
                      ++.+......+.....+|.+.|.||..+-+.++|++|+.| .+++||+++++++..+++  ...+..+.+.+.+++.+++
T Consensus        34 ~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l~~  111 (327)
T KOG0643|consen   34 PTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGGNLILAS  111 (327)
T ss_pred             ceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEEEE
Confidence            4444444444556668899999999999999999999984 589999999999999986  7888999999999987776


Q ss_pred             eCCCCCCCCCCeEEEEeCCC-------CcEEEEeec-CCceEEEEEeC--CeEEEEE-CCeEEEEEcCCC-eEEEEEecc
Q 022387          146 GGGPDPQYPLNKVMIWDDHQ-------SRCIGELSF-RSEVRSVKLRR--DRIIVVL-EQKIFVYNFADL-KLLHQIETI  213 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~-------~~~~~~~~~-~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~-~~i~~~~~~  213 (298)
                      ....- . ..+.|.++|++.       .+++..+.. .+.+..+.|.+  +.++.+. ++.|.+||++++ +.+...+.|
T Consensus       112 tD~~m-g-~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h  189 (327)
T KOG0643|consen  112 TDKQM-G-YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH  189 (327)
T ss_pred             ehhhc-C-cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh
Confidence            63221 1 347799999883       344444444 35777777876  3444443 489999999986 455555667


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC---------------------------------------------
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------------------------------------------  248 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~---------------------------------------------  248 (298)
                      ...+.-+.++++  ..+++ +|+.|.+-++||+.+                                             
T Consensus       190 ~~~Ind~q~s~d--~T~Fi-T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GK  266 (327)
T KOG0643|consen  190 SSKINDLQFSRD--RTYFI-TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGK  266 (327)
T ss_pred             ccccccccccCC--cceEE-ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccc
Confidence            776666666655  46776 599999988887431                                             


Q ss_pred             -----------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          249 -----------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       249 -----------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                                 +++-.+++|-++|++|||+|+|+..++|++||. |||--+..
T Consensus       267 FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~-VR~h~Fd~  318 (327)
T KOG0643|consen  267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY-VRLHHFDS  318 (327)
T ss_pred             hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce-EEEEEecc
Confidence                       011234789999999999999999999999999 99976553

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=1.6e-18  Score=161.43  Aligned_cols=199  Identities=15%  Similarity=0.206  Sum_probs=152.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCC---CEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~  157 (298)
                      ...+..+++++.||||++||+|...| ++||+++..+.....+. |+..+.++++++..   .+||.++       .|+-
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASas-------rdRl  527 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASAS-------RDRL  527 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhcc-------CCce
Confidence            45566899999999999999999855 99999998877666665 78888888887642   3344444       6799


Q ss_pred             EEEEeCCCC-cEEEEeec-CCceEEEEEe-------------------------------------------------C-
Q 022387          158 VMIWDDHQS-RCIGELSF-RSEVRSVKLR-------------------------------------------------R-  185 (298)
Q Consensus       158 v~iWD~~~~-~~~~~~~~-~~~v~~v~~~-------------------------------------------------~-  185 (298)
                      |+|+|+... ..++++.. .+.|+++.|-                                                 + 
T Consensus       528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence            999998653 23333333 2344444331                                                 1 


Q ss_pred             -CeEE-EEECCeEEEEEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccce
Q 022387          186 -DRII-VVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRI  261 (298)
Q Consensus       186 -~~l~-v~~~~~I~iwd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V  261 (298)
                       +.++ ++.|..|+|||+.+++..+.|++. .+....+.+.-||.+.++|+ .-.|+++.++|+-.++ +.+..+|...|
T Consensus       608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at-Scsdktl~~~Df~sgEcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT-SCSDKTLCFVDFVSGECVAQMTGHSEAV  686 (1080)
T ss_pred             cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE-eecCCceEEEEeccchhhhhhcCcchhe
Confidence             1233 344679999999999999999984 34466788888999999997 5568899998887665 55899999999


Q ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          262 ACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       262 ~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +.|.|.+|-+.|++.|-||. |.||.+..
T Consensus       687 TG~kF~nDCkHlISvsgDgC-IFvW~lp~  714 (1080)
T KOG1408|consen  687 TGVKFLNDCKHLISVSGDGC-IFVWKLPL  714 (1080)
T ss_pred             eeeeecccchhheeecCCce-EEEEECch
Confidence            99999999999999999999 99999864

>PTZ00421 coronin; Provisional

Probab=99.80  E-value=3.8e-17  Score=154.40  Aligned_cols=156  Identities=13%  Similarity=0.064  Sum_probs=120.8

Q ss_pred             cCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEEEeCCCCc-------EEEEeecC-CceEEEEEeCC---eEEEEE-
Q 022387          126 RGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQSR-------CIGELSFR-SEVRSVKLRRD---RIIVVL-  192 (298)
Q Consensus       126 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-------~~~~~~~~-~~v~~v~~~~~---~l~v~~-  192 (298)
                      |.+.+..+.+.+ +++.+++++       .|++|+|||+.++.       .+..+..+ ..|.++.|++.   .++++. 
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS-------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTAS-------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEe-------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            567788888876 677777777       68999999997642       34455544 58999999974   344444 


Q ss_pred             CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccc-eeEEEECCCC
Q 022387          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDG  270 (298)
Q Consensus       193 ~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~-V~~l~fspdg  270 (298)
                      +++|+|||+.+++.+..+..|...+..++++++  +.+|+ +|+.||.|++||..... +.++.+|.+. +..+.|.+++
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd--G~lLa-tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD--GSLLC-TTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECC--CCEEE-EecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence            689999999999999999888877777777664  47777 49999999999988655 4578889865 4577899988


Q ss_pred             CEEEEEe----CCCCEEEEEECCCCc
Q 022387          271 QLLATSS----TKGTLVRIFNTLDGT  292 (298)
Q Consensus       271 ~~lAt~S----~Dgt~IrIWd~~tg~  292 (298)
                      .+|++++    .|++ |+|||+++.+
T Consensus       224 ~~ivt~G~s~s~Dr~-VklWDlr~~~  248 (493)
T PTZ00421        224 DLIITLGCSKSQQRQ-IMLWDTRKMA  248 (493)
T ss_pred             CeEEEEecCCCCCCe-EEEEeCCCCC
Confidence            8887765    4788 9999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.80  E-value=2.1e-17  Score=146.39  Aligned_cols=204  Identities=13%  Similarity=0.181  Sum_probs=155.9

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ......+.|..+|+.+..+|.|+||.++++++ +.+.++.++..+....- ....+......|+++.++++.|.     .
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDgLifgtgt-----~  367 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDGLIFGTGT-----P  367 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCceEEeccC-----C
Confidence            34455688999999999999999999999977 56888888876554442 12445555555556666666554     6


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      |+.|+|||+.++..+..|..+ ++|..+.|+.++  ++++.+ +.|++||++..+.++++...... .+.++++|..|.+
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY  446 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence            799999999999888888765 589999998764  444444 56999999999988888875543 6777888888899


Q ss_pred             EEEecCCCceEEEEEcCCcc---eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          231 LVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~---~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      |++ ++.+=.|.++...++.   +..+.-|.+..+++.|....+++|++|.|.. .||+.+
T Consensus       447 L~~-~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~-l~~~a~  505 (506)
T KOG0289|consen  447 LGI-AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI-LRLYAL  505 (506)
T ss_pred             EEe-ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh-eEEeec
Confidence            986 5555455555544442   4577889999999999999999999999998 988764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.80  E-value=7e-18  Score=163.45  Aligned_cols=203  Identities=17%  Similarity=0.160  Sum_probs=149.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCeE-EEEEcCC------C------------ceEEEEeeecCCceEEEEEecCCCE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDP------F------------REIFRRDFERGGGIGVVEMLFRCNI  141 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~gi-~vw~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~  141 (298)
                      -..|.+.|.|+.|+|||++||+|++|.+ .||+...      .            +...+..- |..++.-++|+++..+
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccE
Confidence            3567789999999999999999999885 4998762      1            01112221 7788888888888888


Q ss_pred             EEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEE-------
Q 022387          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI-------  210 (298)
Q Consensus       142 ~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~-------  210 (298)
                      ++.++       .|++|.|||.++.+.+..+..+ +.|..+.|.|-  ++++-. |++|+||++.+..+.+++       
T Consensus       144 lvS~s-------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  144 LVSVS-------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             EEEec-------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            88887       7899999999999888877755 58999999984  444433 479999997654443333       


Q ss_pred             ---------------------------------------------eccCCCcceEEEEeC----C-C--------CeE-E
Q 022387          211 ---------------------------------------------ETIANPKGLCAVSQG----V-G--------SLV-L  231 (298)
Q Consensus       211 ---------------------------------------------~~~~~~~~~~~~s~~----~-d--------~~~-l  231 (298)
                                                                   -+|..+..++.|++.    + +        ..+ +
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence                                                         245555556666652    0 0        112 4


Q ss_pred             EEecCCCceEEEEEcCCcc-eEe-ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          232 VCPGLQKGQVRVEHYASKR-TKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~-~~~-~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +++|+.|+.|.||.....+ +.. ..-....|..|+|+|||..|..+|.||+ |.++.++..+
T Consensus       297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt-V~~i~Fee~E  358 (942)
T KOG0973|consen  297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT-VALIHFEEKE  358 (942)
T ss_pred             EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe-EEEEEcchHH
Confidence            5569999999999986543 222 2223568999999999999999999999 9999988643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=8.6e-19  Score=152.15  Aligned_cols=197  Identities=13%  Similarity=0.121  Sum_probs=150.5

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .+|+..|.|++=+|.. ..+|+|+.|| ++|||+....+...... |++-+..+++.+  ..+++++       +|++|+
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvg-------dDKtvK  132 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ--TSFFTVG-------DDKTVK  132 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc--cceEEec-------CCccee
Confidence            6899999999999987 7899999877 78999998877666665 677788777766  5667777       789999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCCe-EEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      .|-..- ..+.++-..+.+..+..+... .++.+...|.|||.....+++++.-....+.++.|++-. ..+|+ ++..|
T Consensus       133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILa-s~~sD  209 (433)
T KOG0268|consen  133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILA-SCASD  209 (433)
T ss_pred             eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chhee-eeccC
Confidence            998765 356666666777777776543 333345689999998888888887666666666666653 23454 46667


Q ss_pred             ceEEEEEcCC-------------------------------------------cceEeecccccceeEEEECCCCCEEEE
Q 022387          239 GQVRVEHYAS-------------------------------------------KRTKFIMAHDSRIACFALTQDGQLLAT  275 (298)
Q Consensus       239 g~v~i~~~~~-------------------------------------------~~~~~~~~H~~~V~~l~fspdg~~lAt  275 (298)
                      +.|.++|...                                           .++...++|.++|.+|+|||.|+-|+|
T Consensus       210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence            7777766432                                           123356789999999999999999999


Q ss_pred             EeCCCCEEEEEECCCCc
Q 022387          276 SSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       276 ~S~Dgt~IrIWd~~tg~  292 (298)
                      ||.|.+ ||||.+..|+
T Consensus       290 gsyDks-IRIf~~~~~~  305 (433)
T KOG0268|consen  290 GSYDKS-IRIFPVNHGH  305 (433)
T ss_pred             ccccce-EEEeecCCCc
Confidence            999999 9999998775

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.79  E-value=7.7e-18  Score=150.05  Aligned_cols=195  Identities=17%  Similarity=0.249  Sum_probs=148.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .|...+.+++.|+||+|||+|+.+. +.||++++.+.+..... |.+.+..+++...++.++.++       .|++|++|
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s-------~Drsvkvw  271 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSAS-------ADRSVKVW  271 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCccceeeee-------cCCceEEE
Confidence            6777999999999999999999866 66999999877655443 577788888877788888877       78999999


Q ss_pred             eCCCCcEEEEee-cCCceEEEEEeC-CeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          162 DDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       162 D~~~~~~~~~~~-~~~~v~~v~~~~-~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      +++....+.++- +...|.++.... .+.+.+.  |.++++|++..... -.+.++...+.+++|-.+   ..++ +|+.
T Consensus       272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~---~Hfv-sGSd  346 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND---EHFV-SGSD  346 (479)
T ss_pred             ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc---ccee-eccC
Confidence            998776665543 445788887654 4455444  57999999954332 245666666667776554   3444 5999


Q ss_pred             CceEEEEEcCCcc-eEe-eccc-----------ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          238 KGQVRVEHYASKR-TKF-IMAH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       238 dg~v~i~~~~~~~-~~~-~~~H-----------~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ||.|.+|++-.++ +.+ -.+|           ..-|++|+..|...+||+||.+|. ||||.+.+|
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g  412 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDG  412 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCC
Confidence            9999999987654 332 2233           126899999999999999999999 999999988

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.79  E-value=1.6e-17  Score=144.96  Aligned_cols=195  Identities=11%  Similarity=0.147  Sum_probs=148.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC-----Cc--------------------eEEEEeeecCCceEEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP-----FR--------------------EIFRRDFERGGGIGVVEM  135 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~-----~~--------------------~~~~~~~~~~~~~~~~~~  135 (298)
                      .+|+..|-+|+..+||..+++|+-|. +.||+...     .+                    .+..... |...+..+.|
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w  268 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVW  268 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEE
Confidence            48999999999999999999999755 88998211     00                    1111111 5566666666


Q ss_pred             ecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe-EEEE--ECCeEEEEEcCCC---eEEEE
Q 022387          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVV--LEQKIFVYNFADL---KLLHQ  209 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~--~~~~I~iwd~~~~---~~i~~  209 (298)
                      +. ......++       -|.+|+.||+.+++++.++.......++..++.. ++++  ++..|++||-+++   -..++
T Consensus       269 ~d-~~v~yS~S-------wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s  340 (423)
T KOG0313|consen  269 SD-ATVIYSVS-------WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS  340 (423)
T ss_pred             cC-CCceEeec-------ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence            55 33334444       6899999999999999999999999999998743 3332  2479999999653   23457


Q ss_pred             EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      |.+|.+.+..+..++.  +.++.++|+.||++++||....  ++..+.+|...|-++.|+. |.+++|||.|.+ |||+.
T Consensus       341 ~~gH~nwVssvkwsp~--~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~-l~i~~  416 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPT--NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNK-LRIFK  416 (423)
T ss_pred             eecchhhhhheecCCC--CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcce-EEEec
Confidence            7788887777766654  4566668999999999998753  5779999999999999975 679999999999 99987


Q ss_pred             CC
Q 022387          288 TL  289 (298)
Q Consensus       288 ~~  289 (298)
                      -.
T Consensus       417 ~~  418 (423)
T KOG0313|consen  417 GS  418 (423)
T ss_pred             cc
Confidence            54

>PTZ00420 coronin; Provisional

Probab=99.78  E-value=1.1e-16  Score=152.56  Aligned_cols=175  Identities=11%  Similarity=0.101  Sum_probs=125.6

Q ss_pred             EEEEEcCCCceEEEEeeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCCeEEEEeCCCCc--------EEEEee-cCCc
Q 022387          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRSE  177 (298)
Q Consensus       108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iWD~~~~~--------~~~~~~-~~~~  177 (298)
                      +++|+......+..... |.+.+..+.+.+. ++.+++++       .|++|+|||+.++.        .+..+. +...
T Consensus        56 I~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS-------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         56 IRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGS-------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             EEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            67998876554444333 6778888888775 56777766       68999999997642        122333 3457


Q ss_pred             eEEEEEeCCe--E-EEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-E
Q 022387          178 VRSVKLRRDR--I-IVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-K  252 (298)
Q Consensus       178 v~~v~~~~~~--l-~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~  252 (298)
                      |.++.|++..  + +++ .+++|+|||+++++.+..+.. ...  +.++++++++.+|++ ++.|+.|+|||...... .
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~~--V~SlswspdG~lLat-~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PKK--LSSLKWNIKGNLLSG-TCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-CCc--EEEEEECCCCCEEEE-EecCCEEEEEECCCCcEEE
Confidence            9999999853  3 333 368999999999888777753 333  445555566688885 78899999999987654 4


Q ss_pred             eecccccceeE-----EEECCCCCEEEEEeCCC----CEEEEEECCC-CcEEE
Q 022387          253 FIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQ  295 (298)
Q Consensus       253 ~~~~H~~~V~~-----l~fspdg~~lAt~S~Dg----t~IrIWd~~t-g~~l~  295 (298)
                      ++.+|.+.+.+     ..|++++.+|+|+|.|+    + |+|||+++ ++.++
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~  255 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALV  255 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceE
Confidence            78899876433     34678999999988875    6 99999995 55444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.6e-17  Score=153.25  Aligned_cols=195  Identities=15%  Similarity=0.125  Sum_probs=160.5

Q ss_pred             EEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~  168 (298)
                      .-+.|+ ....||+|....+.+|+..+.......++ ++..+..+.+..++..+++..       .+|.|.|||..+.+.
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~~LavG~-------~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGSHLAVGT-------SDGTVQIWDVKEQKK  251 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec-CCCceEEEEECCCCCEEEEee-------cCCeEEEEehhhccc
Confidence            446788 45689999999999999988875544454 367899999999999999988       679999999999888


Q ss_pred             EEEeec--CCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEE-EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387          169 IGELSF--RSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (298)
Q Consensus       169 ~~~~~~--~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~-~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~  244 (298)
                      +.++..  ...|-+++|+...+..+. ++.|..+|++..+.+.. +..|.  ..+|.+.+.+|+.++| +|+.|+.+.||
T Consensus       252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~--qeVCgLkws~d~~~lA-SGgnDN~~~Iw  328 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR--QEVCGLKWSPDGNQLA-SGGNDNVVFIW  328 (484)
T ss_pred             cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc--ceeeeeEECCCCCeec-cCCCccceEec
Confidence            888876  458999999977666665 58999999987665544 55454  4578888888889999 69999999999


Q ss_pred             EcCC-cceEeecccccceeEEEECCC-CCEEEEE--eCCCCEEEEEECCCCcEEEe
Q 022387          245 HYAS-KRTKFIMAHDSRIACFALTQD-GQLLATS--STKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       245 ~~~~-~~~~~~~~H~~~V~~l~fspd-g~~lAt~--S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      |... .+...+..|.++|.+++|+|- ..+||+|  +.|++ ||+||..+|++++.
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDS  383 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecc
Confidence            9854 456689999999999999985 6899998  56998 99999999998865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=1.2e-17  Score=148.77  Aligned_cols=207  Identities=13%  Similarity=0.149  Sum_probs=163.3

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceE-EEEee----------------ecCCceEEEEEecCCC
Q 022387           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI-FRRDF----------------ERGGGIGVVEMLFRCN  140 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~  140 (298)
                      .....|.-+|.+|+++||+++..+++.++ |.=|++.+++.. +.++-                .|...+..++++.++.
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            33456777999999999999999999866 668988665422 11110                1456677788889999


Q ss_pred             EEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeC--Ce-EEEEECCeEEEEEcCCCeEEEEEeccCCC
Q 022387          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR--DR-IIVVLEQKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       141 ~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~--~~-l~v~~~~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                      ++++++       .|+.|.|||.++.+.+..+..+ ..|.+++|-.  .. +..+.+.+|++|++.....+.++.+|...
T Consensus       216 ylatgg-------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  216 YLATGG-------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             EEEecC-------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence            888877       6799999999999998887765 5899999953  34 44456789999999999998898888766


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +..+....-   ...++.|..|.++++|.+.......+.+|.+.+-|++|-.+ ..|+|||+||. |-+|++.+.+.+++
T Consensus       289 v~~IdaL~r---eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  289 VLGIDALSR---ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFT  363 (479)
T ss_pred             eeeechhcc---cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeE
Confidence            555544332   34444599999999999977777789999999999999876 57999999999 99999999998876


Q ss_pred             c
Q 022387          297 G  297 (298)
Q Consensus       297 ~  297 (298)
                      +
T Consensus       364 ~  364 (479)
T KOG0299|consen  364 S  364 (479)
T ss_pred             e
Confidence            5

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.77  E-value=1.6e-17  Score=141.78  Aligned_cols=195  Identities=13%  Similarity=0.228  Sum_probs=149.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+|++++|+|.|++|++|.+ ..+++||+.+.++.....-.  |.+.+..+..+..+++.++++       .||.||||
T Consensus       216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-------kDG~Iklw  288 (430)
T KOG0640|consen  216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-------KDGAIKLW  288 (430)
T ss_pred             cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-------cCCcEEee
Confidence            348999999999999999999 66889999998875544321  677788888888888888877       78999999


Q ss_pred             eCCCCcEEEEeec---CCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccC---CCcc-e-EEEEeCCCCeE
Q 022387          162 DDHQSRCIGELSF---RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA---NPKG-L-CAVSQGVGSLV  230 (298)
Q Consensus       162 D~~~~~~~~~~~~---~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~---~~~~-~-~~~s~~~d~~~  230 (298)
                      |-.+++|+.++.-   ...|.+..|..+...+..   +..+++|.+.+++.+.++.+..   .... . ..|+...  .+
T Consensus       289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE--dy  366 (430)
T KOG0640|consen  289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE--DY  366 (430)
T ss_pred             ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc--ce
Confidence            9999999888753   347888889776544443   4699999999999999987632   1111 1 1333333  44


Q ss_pred             EEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          231 LVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +.+.-...+.++-||..+..-.  .-.+|+++|+++.-||.+.-|.|||+|.. +|.|--+
T Consensus       367 Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r-aRFWyrr  426 (430)
T KOG0640|consen  367 VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR-ARFWYRR  426 (430)
T ss_pred             EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce-eeeeeec
Confidence            4444566677888998765433  34589999999999999999999999999 9999643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.9e-17  Score=135.45  Aligned_cols=197  Identities=15%  Similarity=0.129  Sum_probs=142.6

Q ss_pred             CeEEEEEcC--CCCE-EEEEcC------CeEEEEEcC-CCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           87 TLLHISFNQ--DHGC-FAAGTD------HGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        87 ~V~~v~fs~--dg~~-lasgs~------~gi~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      .=.++.|||  ++++ +|++..      +.+.|-+.. ..+......+..+..+.-++|+.....++++..      .||
T Consensus        10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDG   83 (311)
T KOG0277|consen   10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS------GDG   83 (311)
T ss_pred             ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe------cCc
Confidence            346788998  3432 334332      224466663 444444444434667788888876655544443      369


Q ss_pred             eEEEEeCCC-CcEEEEeecC-CceEEEEEeC---CeEE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          157 KVMIWDDHQ-SRCIGELSFR-SEVRSVKLRR---DRII-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       157 ~v~iWD~~~-~~~~~~~~~~-~~v~~v~~~~---~~l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      .++|||... ...++.++.+ .+|.++.++.   +.++ ..-|++|++|+....+.++++.+|...+....+++.-. .+
T Consensus        84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nl  162 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP-NL  162 (311)
T ss_pred             eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC-Ce
Confidence            999999654 3455555544 5899999875   2222 23479999999999999999999998888888888653 45


Q ss_pred             EEEecCCCceEEEEEcCC-cceEeecccccceeEEEEC-CCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fs-pdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ++ +.|.||.+++||++. ++...+.+|...|.|+.|+ -+...||||+.|+. ||+||+++-+
T Consensus       163 fa-s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r  224 (311)
T KOG0277|consen  163 FA-SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLR  224 (311)
T ss_pred             EE-EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhcc
Confidence            55 589999999999875 3344699999999999999 57899999999999 9999999754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.76  E-value=7.1e-17  Score=143.68  Aligned_cols=199  Identities=13%  Similarity=0.110  Sum_probs=143.8

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCce----------EEEEeeecCCceEEEEEecCCCEEEEEeCCC
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE----------IFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      ..|++.|+.+..-|+. .++|+++..+ +.|||.....-          ..++.. |.+.-..+.|........+++ + 
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~-~-  197 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSG-S-  197 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeec-c-
Confidence            5677889999988865 5677777755 77998754321          112222 444333455554443333333 2 


Q ss_pred             CCCCCCCeEEEEeCCCCcE-------EEEeecC-CceEEEEEeC---CeEEEEE-CCeEEEEEcC--CCeEEEEEeccCC
Q 022387          150 DPQYPLNKVMIWDDHQSRC-------IGELSFR-SEVRSVKLRR---DRIIVVL-EQKIFVYNFA--DLKLLHQIETIAN  215 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~-------~~~~~~~-~~v~~v~~~~---~~l~v~~-~~~I~iwd~~--~~~~i~~~~~~~~  215 (298)
                          .|++|.+||+.....       ...+..+ ..|-.++|++   +.+..++ ++.+.|||++  +.++.+..++|..
T Consensus       198 ----~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  198 ----DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             ----CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence                679999999875322       2233334 3677788865   4555555 4899999999  6777778888999


Q ss_pred             CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .+.+++|++.. ..+|| +|+.||+|++||+.+  .++.++.+|...|.+|.|||. ...|||++.|+. +.|||+..
T Consensus       274 ~vn~~~fnp~~-~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~  348 (422)
T KOG0264|consen  274 EVNCVAFNPFN-EFILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSR  348 (422)
T ss_pred             ceeEEEeCCCC-CceEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccc
Confidence            99999998875 35666 699999999999875  356799999999999999997 589999999999 99999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.9e-16  Score=142.14  Aligned_cols=194  Identities=14%  Similarity=0.130  Sum_probs=147.2

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCeE-EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~gi-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|..+|..+.|+|++ +.|++|++|++ ++|++.+........- |..-+.+..+.+-.+.+++ +||     -|++||
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivv-tGs-----YDg~vr  179 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVV-TGS-----YDGKVR  179 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEE-ecC-----CCceEE
Confidence            6788899999999855 57888888775 5999988764323322 5666777777665554443 333     689999


Q ss_pred             EEeCCCC-cEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQS-RCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~-~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +||.+.. ..+.++++..+|-.+.+-+.  .++.++.+.|++||+. .++.+..+..|...+.++.+..++  ..|. ||
T Consensus       180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~--~rLl-S~  256 (487)
T KOG0310|consen  180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS--TRLL-SG  256 (487)
T ss_pred             EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCC--ceEe-ec
Confidence            9999986 78889999999999887654  5666667899999997 455555555577777777777654  5555 59


Q ss_pred             CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      +-||.|++++.++-++..-....++|-+|+.+|+++.++.|-.||. +-+=
T Consensus       257 sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGl-v~~r  306 (487)
T KOG0310|consen  257 SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL-VSIR  306 (487)
T ss_pred             ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccce-eeee
Confidence            9999999999766555533446789999999999999999999997 6554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=7.4e-17  Score=151.13  Aligned_cols=202  Identities=14%  Similarity=0.166  Sum_probs=160.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCC-------Cce------EEEEeeecCCceEEEEEecCCCEEEEE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDP-------FRE------IFRRDFERGGGIGVVEMLFRCNILALV  145 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (298)
                      +...|.+.|..++.+||++.+++|+. +++++|+...       .+.      ..+.++  ...+.++.+++++.+++++
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdgk~LaVs  526 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDGKLLAVS  526 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCCcEEEEE
Confidence            33688999999999999999999987 5688997631       111      123343  5678889999999999887


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~  221 (298)
                      =       -|++|+||-+.+-+-...+-.| -+|.|+..+++.  ++.+. |..|+||-+.=+.+-+.+-+|...+..+.
T Consensus       527 L-------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  527 L-------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             e-------ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            6       6899999999987766665555 499999988764  33333 57999999988888889999988887888


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcC-CcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      |.|..  .++. +++.||.|+.||-. .+.+..+.+|...|+|++.+|+|.+++|+|.|.+ ||+|......++
T Consensus       600 F~P~~--~~FF-t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s-IRlwE~tde~~~  669 (888)
T KOG0306|consen  600 FLPKT--HLFF-TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS-IRLWERTDEILI  669 (888)
T ss_pred             Ecccc--eeEE-EecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce-eEeeeccCccee
Confidence            87742  3333 58999999999865 4567799999999999999999999999999999 999997665444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.76  E-value=2.1e-15  Score=133.04  Aligned_cols=202  Identities=10%  Similarity=0.049  Sum_probs=139.0

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasg-s~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .+..++|+|+|++++++ .. +.+++||+.+.+.+.....  ......+.+.+++..++++..+      ...+.+||..
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~  145 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTK  145 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecC------CCeEEEEeCC
Confidence            35678999999977654 44 4588999988765544432  3345667778888887776522      2457888998


Q ss_pred             CCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccC-----CCcceEEEEeCCCCeEEEEec
Q 022387          165 QSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~-----~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +++.+..+........+.|+++  .+++..  ++.|++||+.+++.+.++..+.     .......+..++++.++.++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            8877665554455666777754  344443  5899999999988877765321     111222344445556544345


Q ss_pred             CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..++.+.+||..+.++.....+...+.+++|+|+|++|+++ +.+++ |+|||+++++++.++
T Consensus       226 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       226 GPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSND-VSVIDVAALKVIKSI  287 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEE
Confidence            56678999998776554333455689999999999999886 46888 999999999998765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.2e-17  Score=156.72  Aligned_cols=197  Identities=14%  Similarity=0.219  Sum_probs=146.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEE--EEeee--cCCceEE--EEE-ecCCCEEEEEeCCCCCCCCCCeE
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF--RRDFE--RGGGIGV--VEM-LFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~--~~~~~--~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....+|+.++|-..|++++...++||.+.+.....  ...+.  .+....+  +.| .+..+++|+++       ..|.|
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s-------~nG~i  112 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS-------TNGVI  112 (839)
T ss_pred             cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec-------CCCcE
Confidence            46778889999999999988888898775533111  11110  1122222  233 34567888887       56889


Q ss_pred             EEEeCCC---CcEEEEeecC-CceEEEEEeC---CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          159 MIWDDHQ---SRCIGELSFR-SEVRSVKLRR---DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       159 ~iWD~~~---~~~~~~~~~~-~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      .+||+..   ...+..+..+ ..+.+++||.   ..++.+. |+.|++||++..+...++......+.-+.|++.++. .
T Consensus       113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-~  191 (839)
T KOG0269|consen  113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-K  191 (839)
T ss_pred             EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-e
Confidence            9999987   3344444444 4799999985   4455544 589999999988888888876666777889988754 4


Q ss_pred             EEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          231 LVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ++ ++.+.|.++.||+..-.  ...+.+|.++|.|+.|+|++.+|||||.|+. |||||+.+++
T Consensus       192 F~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~  253 (839)
T KOG0269|consen  192 FA-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSR  253 (839)
T ss_pred             EE-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCC
Confidence            44 48999999999998643  4578999999999999999999999999999 9999998654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2e-18  Score=160.90  Aligned_cols=200  Identities=12%  Similarity=0.153  Sum_probs=162.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCeEE-EEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~gi~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .|...|.++..-..++.+++|+++-.. +|.+.....+..... |+..|.++.+.+...+++.++       .+|+||+|
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~Llaags-------asgtiK~w   97 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSERLLAAGS-------ASGTIKVW   97 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchhhhcccc-------cCCceeee
Confidence            345577777776778899999987755 998866555444444 688888888887776666655       67999999


Q ss_pred             eCCCCcEEEEeecC-CceEEEEEeCCeEEEE---ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          162 DDHQSRCIGELSFR-SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~---~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      |++..+.++++..+ ..+.+|.||+..-+.+   .+.-+++||++...+.+++.+|...+.++.|++++  .+++ +|..
T Consensus        98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G--r~v~-~g~e  174 (825)
T KOG0267|consen   98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG--RWVA-SGGE  174 (825)
T ss_pred             ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC--ceee-ccCC
Confidence            99999988887765 4789999999755553   35789999999999999999987777777777654  8888 5888


Q ss_pred             CceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          238 KGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       238 dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      |..++|||...+++ ..|+.|...|..+.|+|..-+|++||.|++ |++||+++-+.|
T Consensus       175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I  231 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVI  231 (825)
T ss_pred             cceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEe
Confidence            99999999987665 489999999999999999999999999999 999999976554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.75  E-value=2.7e-16  Score=141.67  Aligned_cols=204  Identities=12%  Similarity=0.154  Sum_probs=151.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCce---EEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|..-|.++++|...+++.+|+.++|+|||+...+.   +..+... .+.=++.+.+..+++.|++.+       ...+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG-------east  488 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG-------EAST  488 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc-------ccce
Confidence            5677789999999999999999999999999854321   1111110 133456667778888887765       3478


Q ss_pred             EEEEeCCCCcEEEEeecC---CceEEEEEeCCe---EEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          158 VMIWDDHQSRCIGELSFR---SEVRSVKLRRDR---IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~---~~v~~v~~~~~~---l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      +.|||+.........+..   ....+++.+++-   +..+.+|.|.|||+++...++.|++|..-..++.++.++  ..|
T Consensus       489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG--tkl  566 (705)
T KOG0639|consen  489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG--TKL  566 (705)
T ss_pred             eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC--cee
Confidence            999999875543333332   245667777753   333457999999999999999999998888888888776  444


Q ss_pred             EEecCCCceEEEEEcCC-----------------------------------------cceEeecccccceeEEEECCCC
Q 022387          232 VCPGLQKGQVRVEHYAS-----------------------------------------KRTKFIMAHDSRIACFALTQDG  270 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~-----------------------------------------~~~~~~~~H~~~V~~l~fspdg  270 (298)
                      = +|.-|.+|+-||+..                                         ..-..+..|.+.|-++.|++-|
T Consensus       567 W-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  567 W-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG  645 (705)
T ss_pred             e-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence            4 488888888888431                                         1112456788999999999999


Q ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          271 QLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ++|++.+.|.- +..|.+.-|..|++
T Consensus       646 kwfvStGkDnl-LnawrtPyGasiFq  670 (705)
T KOG0639|consen  646 KWFVSTGKDNL-LNAWRTPYGASIFQ  670 (705)
T ss_pred             ceeeecCchhh-hhhccCccccceee
Confidence            99999999998 99999988876654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.75  E-value=1.8e-16  Score=138.48  Aligned_cols=200  Identities=13%  Similarity=0.134  Sum_probs=143.3

Q ss_pred             cCCCCCCeEEEEEc-CCC--CEEEEEcC-CeEEEEEcCCCceEEEEee---ecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           81 SSSPPPTLLHISFN-QDH--GCFAAGTD-HGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        81 ~~~~~~~V~~v~fs-~dg--~~lasgs~-~gi~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      ..+|.++|.+++|- ++.  ..|++++. .++++|.++..........   .|+..+..+....++..++.++       
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS-------  212 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS-------  212 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-------
Confidence            36778899988875 333  25777776 5688998766542211110   1677788888777777776666       


Q ss_pred             CCCeEEEEeCCC-------------------------CcEEEEeecC-CceEEEEEeCCeEEE-E-ECCeEEEEEcCCCe
Q 022387          154 PLNKVMIWDDHQ-------------------------SRCIGELSFR-SEVRSVKLRRDRIIV-V-LEQKIFVYNFADLK  205 (298)
Q Consensus       154 ~d~~v~iWD~~~-------------------------~~~~~~~~~~-~~v~~v~~~~~~l~v-~-~~~~I~iwd~~~~~  205 (298)
                      -|.+|+||+..+                         +..+..+..| .+|.++.|.+...+. + -|.+|+.||+.+++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~  292 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG  292 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc
Confidence            689999999321                         1122334433 588999997643333 3 36899999999999


Q ss_pred             EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeecccccceeEEEECCC-CCEEEEEeCCC
Q 022387          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD-GQLLATSSTKG  280 (298)
Q Consensus       206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dg  280 (298)
                      .+.++.+. ....  +++..+...+|| +|+.|..+++||-..+.    ..+|.+|+.-|.+|.|+|. -.+|++||.|+
T Consensus       293 ~~~~~~~~-ksl~--~i~~~~~~~Ll~-~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  293 LKSTLTTN-KSLN--CISYSPLSKLLA-SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             ceeeeecC-ccee--Eeecccccceee-ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            88887753 3334  444455667888 49999999999976542    3378999999999999986 58999999999


Q ss_pred             CEEEEEECCCCc
Q 022387          281 TLVRIFNTLDGT  292 (298)
Q Consensus       281 t~IrIWd~~tg~  292 (298)
                      + +|+||+++-+
T Consensus       369 t-~klWDvRS~k  379 (423)
T KOG0313|consen  369 T-VKLWDVRSTK  379 (423)
T ss_pred             e-EEEEEeccCC
Confidence            9 9999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.9e-16  Score=135.58  Aligned_cols=190  Identities=16%  Similarity=0.159  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      -.|+.||+.|.+||+|..+| +.|||+.+.+.-..... |...+.+++|+.+++.|.+++       .|..|++||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS-------~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSS-------RDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeec-------CCceeEEEeccCC
Confidence            67999999999999999977 77999999875333332 678999999999999999988       7899999999999


Q ss_pred             cEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCC-cceE---EEEeCCCCeEEEEecCCC
Q 022387          167 RCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANP-KGLC---AVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~-~~~~---~~s~~~d~~~la~sGs~d  238 (298)
                      .++.++.|.++|..+.||+.  ..++++  +..-.+.++.+  .++++-..... ....   ...++..+.++. +|...
T Consensus        98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsK  174 (405)
T KOG1273|consen   98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSK  174 (405)
T ss_pred             CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEE-EecCc
Confidence            99999999999999999873  333332  44444444443  22332211111 0111   113455668887 49999


Q ss_pred             ceEEEEEcCCcc-eEeecccc-cceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          239 GQVRVEHYASKR-TKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       239 g~v~i~~~~~~~-~~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      |.+.+++..+-. +..++.-. ..|..|-|+..|+.|+.-..|+. ||.++++
T Consensus       175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~  226 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEIS  226 (405)
T ss_pred             ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehh
Confidence            999999987654 44566555 78999999999999999999999 9999977

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=7.8e-18  Score=158.06  Aligned_cols=193  Identities=12%  Similarity=0.139  Sum_probs=140.7

Q ss_pred             CeEEEEEcC-CCCEEEEEcCCe-EEEEEcCC---CceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEE
Q 022387           87 TLLHISFNQ-DHGCFAAGTDHG-FRIYNCDP---FREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        87 ~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+..|.|++ +.++||+.+..| |.+||+..   .+.+....- |+..+..+++.. .+++++.++       +|++||+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGS-------QDg~vK~  160 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGS-------QDGTVKC  160 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecC-------CCceEEE
Confidence            455678886 567999999877 56999976   222222221 566777777753 455555544       7899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeC---CeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRR---DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~---~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      ||++....+.++... ..|..|.|++   +.++.+.+ |.+++||++. .++...+.+|..++.++.++|  +..+|| +
T Consensus       161 ~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP--nr~~lA-T  237 (839)
T KOG0269|consen  161 WDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP--NREWLA-T  237 (839)
T ss_pred             EeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC--CCceee-e
Confidence            999988777666554 4789999975   34555544 8999999975 455667788988888777766  558999 5


Q ss_pred             cCCCceEEEEEcCCcceE-eeccc-ccceeEEEECCCC-CEEEEEeC--CCCEEEEEECCCC
Q 022387          235 GLQKGQVRVEHYASKRTK-FIMAH-DSRIACFALTQDG-QLLATSST--KGTLVRIFNTLDG  291 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~-~~~~H-~~~V~~l~fspdg-~~lAt~S~--Dgt~IrIWd~~tg  291 (298)
                      |+.|++|+||+++..... ...-| ..+|.+|+|-|+- .+|||+|.  |-. |+|||++.-
T Consensus       238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRP  298 (839)
T KOG0269|consen  238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRP  298 (839)
T ss_pred             cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccc
Confidence            999999999999865433 22233 3679999999984 78898865  445 999998853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.74  E-value=6.4e-17  Score=142.55  Aligned_cols=205  Identities=13%  Similarity=0.128  Sum_probs=146.6

Q ss_pred             CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387           69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      .|+........+..+|...|+++.|......+++|+. .++++||+....+..+.-.  ...+.-+.+.    ...+.+|
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~----~~~~~Sg  318 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS----ISDVISG  318 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec----ceeeeec
Confidence            3444444344445679999999999998877889987 6688999988654322221  1222222221    1222232


Q ss_pred             CCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCc--ceEEE
Q 022387          148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPK--GLCAV  222 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~--~~~~~  222 (298)
                           ..|++||+||.+...+...+...+.|.++..+.++  ++++. ++++.+.|+++.+..+.+.......  ....+
T Consensus       319 -----H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  319 -----HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             -----ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence                 26899999999999999999999999999887654  44443 5899999999999988887533211  12233


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCcceE-eeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      .++|++.|+|+ |+.||.|.||+..+.++. .+.....  .|++++|+|.|++|++++.++. +.+|
T Consensus       394 vfSpd~~YvaA-GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~-v~lW  458 (459)
T KOG0288|consen  394 VFSPDGSYVAA-GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA-VTLW  458 (459)
T ss_pred             EECCCCceeee-ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc-eEec
Confidence            34455689984 999999999999876643 4544333  6999999999999999999999 9999

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.73  E-value=1.5e-15  Score=132.24  Aligned_cols=204  Identities=12%  Similarity=0.151  Sum_probs=164.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....|...|.+|+.+|+.+++|+|+. |...||++.++.......- |+..+.++.+++++.++|++.       .+|.|
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGd-------msG~v  130 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGD-------MSGKV  130 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecC-------CCccE
Confidence            34678889999999999999999998 4456999999887666654 678888888888888888766       67999


Q ss_pred             EEEeCCCCcEEEEeecC-CceEEEEEeCCe-EEEE--ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRDR-IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~-l~v~--~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +||+..++.....+... ..+-=+.||+.. ++++  .++.+.+|.+.+....+.+.+|..+..+-.|.+++  ..+++ 
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG--Kr~~t-  207 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG--KRILT-  207 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC--ceEEE-
Confidence            99999999887776532 345556788752 2333  35899999999888889999998888777887764  77774 


Q ss_pred             cCCCceEEEEEcCCcce-Eeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          235 GLQKGQVRVEHYASKRT-KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~-~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      |..||+|++|+.++... ..+.+ -...-.++.++.++..+.+|+.++. +++-+..+||++.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~-~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV-ACGVNNGSGKVVN  269 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc-EEEEccccceEEE
Confidence            99999999999988753 34442 2346899999999999999999999 9999999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.71  E-value=8.7e-16  Score=134.19  Aligned_cols=196  Identities=10%  Similarity=0.140  Sum_probs=130.2

Q ss_pred             CCCCCeEEEEEcCC--CCEEEEEcCCe-EEEEEcCCC----------------ceEEEEeeecCCceEEEEEecCCCEEE
Q 022387           83 SPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPF----------------REIFRRDFERGGGIGVVEMLFRCNILA  143 (298)
Q Consensus        83 ~~~~~V~~v~fs~d--g~~lasgs~~g-i~vw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (298)
                      .|...|+-+.-++-  ..+.|+=++.| +.||++...                +.++.... |.+.-..++|++-... .
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g-~  226 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTG-R  226 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeeccccccc-c
Confidence            33444555555543  34666667766 789987421                23333332 4555556666552221 1


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCCcEEEE----eecCCceEEEEEeCC---eEEEE-ECCeEEEEEcCCC---eEEEEEec
Q 022387          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGE----LSFRSEVRSVKLRRD---RIIVV-LEQKIFVYNFADL---KLLHQIET  212 (298)
Q Consensus       144 ~~~~~~~~~~~d~~v~iWD~~~~~~~~~----~~~~~~v~~v~~~~~---~l~v~-~~~~I~iwd~~~~---~~i~~~~~  212 (298)
                      +.+|.     .-+.|++|...++.....    ..+...|-.++|++.   .++.| ++++|+|||++.+   .++.+ +.
T Consensus       227 LlsGD-----c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  227 LLSGD-----CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             cccCc-----cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence            22221     447899999988765332    223447888889763   34444 3799999999876   33333 66


Q ss_pred             cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC----cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEE
Q 022387          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       213 ~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~----~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd  287 (298)
                      |...+.+++++...  .+|| +|+.||++.|||+.+    .++.+|+.|+.+|++|.|+|. ...||.+|.|.. |.|||
T Consensus       301 h~sDVNVISWnr~~--~lLa-sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWD  376 (440)
T KOG0302|consen  301 HNSDVNVISWNRRE--PLLA-SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWD  376 (440)
T ss_pred             cCCceeeEEccCCc--ceee-ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEE
Confidence            77766666665544  6777 699999999999874    345699999999999999985 577888888998 99999


Q ss_pred             CCC
Q 022387          288 TLD  290 (298)
Q Consensus       288 ~~t  290 (298)
                      +.-
T Consensus       377 lsv  379 (440)
T KOG0302|consen  377 LSV  379 (440)
T ss_pred             eec
Confidence            874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=1.4e-15  Score=144.20  Aligned_cols=198  Identities=14%  Similarity=0.132  Sum_probs=149.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..+|.+.|..++||.++-+|-++.|+++|+|++....++....  |..=|+++++.+..+...+.| +     -|++|||
T Consensus       365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSG-S-----LD~KvRi  436 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISG-S-----LDGKVRL  436 (712)
T ss_pred             hhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeec-c-----cccceEE
Confidence            3688899999999998877777778999999999888876655  688889999887655444433 2     6899999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeE--EEEE-CCeEEEEEcCCCeEEEEEeccCC--------CcceEEEEeCCCCe
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIETIAN--------PKGLCAVSQGVGSL  229 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l--~v~~-~~~I~iwd~~~~~~i~~~~~~~~--------~~~~~~~s~~~d~~  229 (298)
                      |++...+.+.-.....-|+++++.|++-  ++++ .|.+++|+..+.++...++.+..        .+..+.+.+.....
T Consensus       437 WsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~  516 (712)
T KOG0283|consen  437 WSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE  516 (712)
T ss_pred             eecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence            9999988887777778899999988643  3333 69999999998888776654221        22333333322225


Q ss_pred             EEEEecCCCceEEEEEcCCcc-eEeecccccc--eeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|+  .+.|..|+|+|..... +..|+++...  =..-.|+.||++|+++|+|.. |.||++.
T Consensus       517 vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~-VYiW~~~  576 (712)
T KOG0283|consen  517 VLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW-VYIWKND  576 (712)
T ss_pred             EEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce-EEEEeCC
Confidence            776  4999999999986554 4467765432  344579999999999999998 9999974

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.71  E-value=1.5e-16  Score=136.65  Aligned_cols=206  Identities=16%  Similarity=0.203  Sum_probs=159.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .++..+|.|+.||.|...||+|+.|| |+||.++++.++.+.+-+|..++.++.++.++..+..++       .|.++||
T Consensus       260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s-------fD~tvRi  332 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS-------FDQTVRI  332 (508)
T ss_pred             eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc-------ccceEEE
Confidence            46678999999999999999999877 899999999887665544677788887777666555555       6899999


Q ss_pred             EeCCCCcEEEEeecCC-ceEEEEEeCC--eEEEE-ECCeEEEEEcCCCeEEEEEeccCC--CcceEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~~--~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~s  234 (298)
                      --+.+|+++.++..++ -|....|.++  .++.+ ++++|++|+..+.+++.+|+....  ++..+.+-|.....+++  
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV--  410 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV--  410 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--
Confidence            9999999999998775 5677778764  44444 469999999999999999987443  33444433332234555  


Q ss_pred             cCCCceEEEEEcCCcceEeecc---cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          235 GLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~~~~~---H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +....+|.|-++...-+..+..   -.+..-+.+.||.|.++-+.++|+. +.-|.+.+|++-+++
T Consensus       411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTL  475 (508)
T ss_pred             EcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeee
Confidence            5788899998887776666643   3356677789999999999999999 999999999986653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.71  E-value=5e-17  Score=145.67  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=126.4

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC-CcEEEEeecCC-ceEEEEEeCC---eEEEEECCeEEEEE
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSFRS-EVRSVKLRRD---RIIVVLEQKIFVYN  200 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~-~~~~~~~~~~~-~v~~v~~~~~---~l~v~~~~~I~iwd  200 (298)
                      |..++..+.+.+....|+++++      .|+.|+||++.. +.+++++.++. +|..+.|+..   ++.+.-|..|++||
T Consensus       213 H~kgvsai~~fp~~~hLlLS~g------mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  213 HTKGVSAIQWFPKKGHLLLSGG------MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             CccccchhhhccceeeEEEecC------CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            5666777777663333433332      789999999987 88999988764 8999999864   34444589999999


Q ss_pred             cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCC
Q 022387          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTK  279 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~D  279 (298)
                      +++++++.++... ....++.+.++..+.+|+  |..||.|+-||+....+. .+..|-+.|..|.|-++|++|+|+|+|
T Consensus       287 tETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  287 TETGQVLSRFHLD-KVPTCVKFHPDNQNIFLV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             cccceEEEEEecC-CCceeeecCCCCCcEEEE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            9999999998864 445677777776444444  999999999999887754 788899999999999999999999999


Q ss_pred             CCEEEEEECCCCcEE
Q 022387          280 GTLVRIFNTLDGTLL  294 (298)
Q Consensus       280 gt~IrIWd~~tg~~l  294 (298)
                      ++ +|||+.+.+-.+
T Consensus       364 ks-~riWe~~~~v~i  377 (503)
T KOG0282|consen  364 KS-VRIWENRIPVPI  377 (503)
T ss_pred             cc-EEEEEcCCCccc
Confidence            99 999999887554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.70  E-value=2.3e-15  Score=128.20  Aligned_cols=199  Identities=14%  Similarity=0.128  Sum_probs=145.3

Q ss_pred             CcccCCCCCCeEEEEEcC-CCCEEEEEcC-CeEEEEEcCCCceEEEEe-eecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           78 ESTSSSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~-dg~~lasgs~-~gi~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      +.+.......|.+++||| ...+|+.|+- ++||+|+++..+...-+. ..|.+.+..++|+-++..+++++       .
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------~   92 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------C   92 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------c
Confidence            344455667899999999 4456656765 559999998743222111 11688999999999997777766       7


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeE--EEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l--~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      |+.+++||+.++|...--.|..+|.++.|-+...  .+++   |++|++||.+..+++.+++-.+.   +.+...  ...
T Consensus        93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---vYa~Dv--~~p  167 (347)
T KOG0647|consen   93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---VYAADV--LYP  167 (347)
T ss_pred             CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---eeehhc--cCc
Confidence            8999999999998877667778999998855433  2222   58999999999999988875422   222222  224


Q ss_pred             EEEEecCCCceEEEEEcCCcceEeeccccc----ceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~~~~~~~H~~----~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ++++ +..+..|.++++.+.+ .+++.+.+    -++||+.-+|...+|-||-.|. +-|..+..+
T Consensus       168 m~vV-ata~r~i~vynL~n~~-te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~  230 (347)
T KOG0647|consen  168 MAVV-ATAERHIAVYNLENPP-TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP  230 (347)
T ss_pred             eeEE-EecCCcEEEEEcCCCc-chhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC
Confidence            5554 6788899999987653 23444433    4899999999999999999999 999999887

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.69  E-value=8.7e-16  Score=136.54  Aligned_cols=203  Identities=18%  Similarity=0.263  Sum_probs=156.4

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|..++|+..- ..||+|+. +++++||+++++...+... |++.+..+.|.+....+.+.| +     .|++|+
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsG-s-----~D~~V~  312 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSG-S-----YDGTVA  312 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEec-c-----ccceEE
Confidence            4577889999999865 57999997 6699999999988776664 688999999976544443433 2     689999


Q ss_pred             EEeCCC-CcEEEEeecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQ-SRCIGELSFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~-~~~~~~~~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +.|.+. .+.-..+++.+.|-.+.|++   ..+++.+ +|.|+-+|+|+. +++.+++.|..++..++++..-. .+++ 
T Consensus       313 l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p-~~l~-  390 (463)
T KOG0270|consen  313 LKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP-GLLS-  390 (463)
T ss_pred             eeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC-ccee-
Confidence            999984 44556788888888888865   3444554 489999999875 99999999999999888876542 4455 


Q ss_pred             ecCCCceEEEEEcCCcceEeecccc---cceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          234 PGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~~H~---~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      +++.++.|.+|++.....+....|.   +...|.++.|+ .-+||.|+..+. +||||+.+..-+
T Consensus       391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V  454 (463)
T KOG0270|consen  391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV  454 (463)
T ss_pred             eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence            5999999999999876655555554   34667777777 468899999987 999999887543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.4e-14  Score=124.07  Aligned_cols=195  Identities=11%  Similarity=0.164  Sum_probs=148.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+|...|++++.+|-++.+++|+. +++++||+...++......   .+..+.++.+.+..+|++.++       +.|+|
T Consensus        97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~-------~~IkL  166 (311)
T KOG1446|consen   97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGS-------ELIKL  166 (311)
T ss_pred             CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCC-------CeEEE
Confidence            578899999999998888888886 5799999998777655553   455677778888888887744       47999


Q ss_pred             EeCCCC--cEEEEeecC----CceEEEEEeCC--eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeE
Q 022387          161 WDDHQS--RCIGELSFR----SEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLV  230 (298)
Q Consensus       161 WD~~~~--~~~~~~~~~----~~v~~v~~~~~--~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~  230 (298)
                      +|++.-  ....++...    .+...+.|+++  .+++.+. +.+++.|--++..+.++..+.+.. .....++.||+++
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            999873  344444433    36788899875  4555554 789999999999999998876544 2234444556688


Q ss_pred             EEEecCCCceEEEEEcCCcc-eEeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          231 LVCPGLQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~-~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +. +|+.||+|.+|+.++.. +..+++ |.+++.|+.|+|....|||++.  . +-+|=...
T Consensus       247 vl-~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~-l~fw~p~~  304 (311)
T KOG1446|consen  247 VL-SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--N-LVFWLPDE  304 (311)
T ss_pred             EE-EecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--e-EEEEeccc
Confidence            87 59999999999998764 457777 8999999999999999998864  3 77886553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.69  E-value=1.8e-15  Score=143.39  Aligned_cols=195  Identities=13%  Similarity=0.110  Sum_probs=157.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEE--eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..+++|+.++-|++...|..+| |-+||++.+-.....  ...|.+.+..+.+......++.++       .+|-+++||
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-------~~Gilkfw~  521 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-------ADGILKFWD  521 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-------CcceEEEEe
Confidence            5899999999999999998866 669999987542222  113788888888887777777766       679999999


Q ss_pred             CCCCcEEEEeecCCceEEEEEeC--CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          163 DHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      ..++..+..+.....+.++..+.  +.++++.+ -.|+++|..+.+.++.|.+|.+.+..++||++  +.+|+ +.+-|+
T Consensus       522 f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D--grWli-sasmD~  598 (910)
T KOG1539|consen  522 FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD--GRWLI-SASMDS  598 (910)
T ss_pred             cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC--CcEEE-EeecCC
Confidence            99999888888888888877765  34444444 59999999999999999999887766666665  48888 489999


Q ss_pred             eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       240 ~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +|++||+-+..+.-.-.-..+.++|.|||+|.+|||...|..-|.+|--.+
T Consensus       599 tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  599 TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            999999988876644445688999999999999999999965599997543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=5.9e-17  Score=151.22  Aligned_cols=182  Identities=15%  Similarity=0.236  Sum_probs=137.1

Q ss_pred             EEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-C
Q 022387           99 CFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-S  176 (298)
Q Consensus        99 ~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~  176 (298)
                      +++.+-.. .++||+.+....       |...++++........++.+  |     .|..+-+|....-..+..+..+ .
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~~~-------hsaav~~lk~~~s~r~~~~G--g-----~~~k~~L~~i~kp~~i~S~~~hes   71 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREFVA-------HSAAVGCLKIRKSSRSLVTG--G-----EDEKVNLWAIGKPNAITSLTGHES   71 (825)
T ss_pred             ccceeeeeeccccccchhhhh-------hhhhhceeeeeccceeeccC--C-----CceeeccccccCCchhheeeccCC
Confidence            34444332 356777554322       23444555543344444443  3     4577889998877666666654 5


Q ss_pred             ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC-CcceE
Q 022387          177 EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTK  252 (298)
Q Consensus       177 ~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~~  252 (298)
                      +|-++.|+....+++.   +++|++||+...+.++++.+|......+.|++.  +.+.| +|+.|+.+.+||.+ .+...
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a-~gStdtd~~iwD~Rk~Gc~~  148 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFA-SGSTDTDLKIWDIRKKGCSH  148 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEec-cccccccceehhhhccCcee
Confidence            8999999876444432   489999999999999999998877767776655  48887 79999999999998 56778


Q ss_pred             eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       253 ~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      .+++|...|+++.|+|+|+++|+|++|.+ |+|||+.-|+.+++|.
T Consensus       149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  149 TYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFK  193 (825)
T ss_pred             eecCCcceeEEEeecCCCceeeccCCcce-eeeecccccccccccc
Confidence            99999999999999999999999999999 9999999999998873

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.8e-15  Score=135.28  Aligned_cols=189  Identities=14%  Similarity=0.130  Sum_probs=136.3

Q ss_pred             CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC-------CCceEEEEeeecCCceEEEEE--ecC-
Q 022387           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD-------PFREIFRRDFERGGGIGVVEM--LFR-  138 (298)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~-  138 (298)
                      |.........+...|-+.|+|+.|+-||.+|++|+.|| |.+|.+-       +........+ +.|...+..+  .+. 
T Consensus       108 WelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  108 WELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGG  186 (476)
T ss_pred             EEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-ccCcceeEEEEecCCC
Confidence            33333334445578888999999999999999999988 6699652       1111112223 2444444443  333 


Q ss_pred             -CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCC-----------
Q 022387          139 -CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFAD-----------  203 (298)
Q Consensus       139 -~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~-----------  203 (298)
                       ...+++++       .|+++|+||+..+..+.++.++..+.++..++-  .+++++ +|.|.+.++.+           
T Consensus       187 ~~~rl~TaS-------~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k  259 (476)
T KOG0646|consen  187 TNARLYTAS-------EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK  259 (476)
T ss_pred             ccceEEEec-------CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence             23556666       789999999999999999999999999999873  445554 47888877743           


Q ss_pred             -----CeEEEEEeccCC--CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCC
Q 022387          204 -----LKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQD  269 (298)
Q Consensus       204 -----~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspd  269 (298)
                           +..+..+.+|.+  .+.+.+++.|+  .+|+ +|+.||.|+|||...++.. ++..-.++|+.+.+.|=
T Consensus       260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLl-SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  260 GRHEENTQINVLVGHENESAITCLAISTDG--TLLL-SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ccccccceeeeeccccCCcceeEEEEecCc--cEEE-eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence                 234556677777  77788888876  7887 6999999999999988754 45446789999999664

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.68  E-value=1.2e-15  Score=126.98  Aligned_cols=201  Identities=13%  Similarity=0.124  Sum_probs=148.1

Q ss_pred             CCCCCCeEEEEEcC---CCCEEEEEcCCeEE-EEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQ---DHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~---dg~~lasgs~~gi~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ++|..+|..++|||   +|-+|++++.|+-- +-+-+++.++-+.+- |.+.+-..++  +.+-+..+++.     .|-+
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l--~~na~~aasaa-----adft   82 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATL--NKNATRAASAA-----ADFT   82 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeec--Cchhhhhhhhc-----ccch
Confidence            57778999999985   89999999998843 666788888766664 4554443333  33333222322     6788


Q ss_pred             EEEEeCCCCcEEEEeecCCceEEEEEeCC---------------------------------------------eEEE-E
Q 022387          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD---------------------------------------------RIIV-V  191 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------------------------------------------~l~v-~  191 (298)
                      .+|||..++..+..+++...|.+++|+.+                                             -++. +
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence            99999999988888888778888887654                                             1222 2


Q ss_pred             ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCC
Q 022387          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG  270 (298)
Q Consensus       192 ~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg  270 (298)
                      .+++||+||.++++.++++.. ..++.+.-++.++  .+|.+  ...+.|.+||.+. +.++.++ -.-.|.+-.++|+-
T Consensus       163 dd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG--~ilTi--a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDG--RILTI--AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKK  236 (334)
T ss_pred             cCCceEEEEeccCcEEEEEec-CCCCcceeeccCC--CEEEE--ecCceeEEeccccccceeecc-CccccccccccCCC
Confidence            358999999999999999886 3557777887766  56653  5566899999865 3343332 23458999999999


Q ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          271 QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..|+.|++|.. ++.||+.+|..+..|
T Consensus       237 ~~fVaGged~~-~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  237 EFFVAGGEDFK-VYKFDYNTGEEIGSY  262 (334)
T ss_pred             ceEEecCcceE-EEEEeccCCceeeec
Confidence            99999999999 999999999887654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=5.3e-14  Score=124.08  Aligned_cols=188  Identities=13%  Similarity=0.123  Sum_probs=128.1

Q ss_pred             CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387           97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (298)
Q Consensus        97 g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (298)
                      ++.+++++.++ +++|+.++.+.......  ...+..+.+.+++..++++++      .++.|++||..+++.+..+...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~--~~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPV--GQRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEEC--CCCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCC
Confidence            35677877654 88999988776555443  334556777777776655442      4688999999998887777655


Q ss_pred             CceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc-eEEEEEcCCcc
Q 022387          176 SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKR  250 (298)
Q Consensus       176 ~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg-~v~i~~~~~~~  250 (298)
                      ..+..+.++++  .++++.  ++.|++||+.+.+.+..+..+.. ...+++  ++++.++++ ++.++ .+.+|+.....
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~--~~dg~~l~~-~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE-PEGMAV--SPDGKIVVN-TSETTNMAHFIDTKTYE  148 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC-cceEEE--CCCCCEEEE-EecCCCeEEEEeCCCCe
Confidence            55667778764  344443  47999999998888877764322 233444  455577775 45444 55667877654


Q ss_pred             eEeecccccceeEEEECCCCCEEE-EEeCCCCEEEEEECCCCcEEEec
Q 022387          251 TKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       251 ~~~~~~H~~~V~~l~fspdg~~lA-t~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..........+.+++|+|+|++|+ ++..|+. |++||++++++++++
T Consensus       149 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~  195 (300)
T TIGR03866       149 IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKI  195 (300)
T ss_pred             EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeee
Confidence            432222334568899999999885 4456888 999999999876643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.68  E-value=2e-15  Score=134.45  Aligned_cols=198  Identities=16%  Similarity=0.214  Sum_probs=140.6

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCce----E-EEEee-ecCCceEEEEEec-CCCEEEEEeCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFRE----I-FRRDF-ERGGGIGVVEMLF-RCNILALVGGGPDPQ  152 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~----~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  152 (298)
                      .+|...-++++|++... .|++|++ .++.+||+.....    + -+..+ .|...+.-+.|.+ +.++++.++      
T Consensus       174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~------  247 (422)
T KOG0264|consen  174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG------  247 (422)
T ss_pred             EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec------
Confidence            45555678899998544 4666666 5589999864332    1 11112 1566666777754 455667777      


Q ss_pred             CCCCeEEEEeCCC--CcEEEEe-ecCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEe
Q 022387          153 YPLNKVMIWDDHQ--SRCIGEL-SFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       153 ~~d~~v~iWD~~~--~~~~~~~-~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~  224 (298)
                       .|+.+.|||.++  .++.... .+..+|.|+.|++.   .++.+. +++|.+||+|+. ++++++..|...+..+.++|
T Consensus       248 -dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  248 -DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             -CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence             689999999995  3333333 34568999999872   333333 689999999875 46788888888777777777


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCC---c------------ceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEEC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYAS---K------------RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~---~------------~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~  288 (298)
                      +.+ .+|| +++.|+.+.|||+..   +            .+.+-.||+..|..+.|+|+. -.+||.++|+. ++||++
T Consensus       327 h~e-tvLA-SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~~  403 (422)
T KOG0264|consen  327 HNE-TVLA-SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQM  403 (422)
T ss_pred             CCC-ceeE-ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce-EEEeec
Confidence            653 4566 567999999999862   1            123556899999999999986 56788898988 999997


Q ss_pred             C
Q 022387          289 L  289 (298)
Q Consensus       289 ~  289 (298)
                      .
T Consensus       404 s  404 (422)
T KOG0264|consen  404 A  404 (422)
T ss_pred             c
Confidence            6

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.4e-14  Score=138.59  Aligned_cols=202  Identities=12%  Similarity=0.095  Sum_probs=135.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC-----------ceEEE-------------------Eeee--c
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF-----------REIFR-------------------RDFE--R  126 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~-----------~~~~~-------------------~~~~--~  126 (298)
                      ..+.|...-+.|+|.++|++|.+.+.+| |++|+....           ..+..                   ..+.  .
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence            3456777788899999999888766655 789965221           00000                   0000  0


Q ss_pred             --------CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEee-cCCceEEEEEeCCeEE--EE-ECC
Q 022387          127 --------GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII--VV-LEQ  194 (298)
Q Consensus       127 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~~l~--v~-~~~  194 (298)
                              .-.+.++++..++..+|.++       +|-.|++-+.........+. +..+|.++.++++..+  +. ++|
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaags-------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGS-------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeec-------CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence                    01123333333444444433       57789999988766555555 4569999999986433  33 469


Q ss_pred             eEEEEEcCCCeEEEEEeccCC------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eee--cccccceeEEE
Q 022387          195 KIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI--MAHDSRIACFA  265 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~--~~H~~~V~~l~  265 (298)
                      .|+|||+.++.+.+++..-..      ...++..+++|++..+++ -..|+.|.+++...-.. ..+  +-|.+.+.+++
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~-~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV-PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe-eccCCeEEEEccCCceeheeecccccccceEEEE
Confidence            999999999888877764221      123556778888665554 47788999988876442 233  34555699999


Q ss_pred             ECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          266 LTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       266 fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      |||+|+|||+++.||. |-|||+++
T Consensus       240 wsPnG~YiAAs~~~g~-I~vWnv~t  263 (933)
T KOG1274|consen  240 WSPNGKYIAASTLDGQ-ILVWNVDT  263 (933)
T ss_pred             EcCCCcEEeeeccCCc-EEEEeccc
Confidence            9999999999999999 99999996

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.6e-15  Score=134.14  Aligned_cols=204  Identities=14%  Similarity=0.189  Sum_probs=156.9

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .+-+|.++.|.|+|. .+++++.+. ...||+++.+..-.....  .+..+...+++++++.++++|       ..|.|.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-------~~G~I~  328 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-------NNGHIH  328 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-------cCceEE
Confidence            345899999999999 888888866 569999887643222221  123445556788999999988       668999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      |....+++.+..++..+.|..+.|+.+  .++++ ..|.|.+||++...+++++..... +....++...++.+||+ |+
T Consensus       329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~-GS  406 (514)
T KOG2055|consen  329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLAT-GS  406 (514)
T ss_pred             eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEe-cc
Confidence            999999999999999999999999754  34433 468999999999999999876433 34445555555689995 99


Q ss_pred             CCceEEEEEcCC-------cceEeecccccceeEEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~-------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~--Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..|.|.||+.+.       ++++++..-...|++|+|++|+++||.+|.  +.. +|+-.+.+..++..|
T Consensus       407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNf  475 (514)
T KOG2055|consen  407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNF  475 (514)
T ss_pred             CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccC
Confidence            999999999653       345567777889999999999999999875  556 898888877666543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=1.6e-16  Score=141.95  Aligned_cols=196  Identities=16%  Similarity=0.195  Sum_probs=158.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      .-+.+.++.+|++|+.|+.+| +..+|+.+.+..+....  ...+..+.+.++..++|++-        .+-+.|||- .
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--~Etv~Dv~~LHneq~~AVAQ--------K~y~yvYD~-~  199 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--METVRDVTFLHNEQFFAVAQ--------KKYVYVYDN-N  199 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh--hhhhhhhhhhcchHHHHhhh--------hceEEEecC-C
Confidence            456789999999999999988 66999999988877775  67788888888887777764        577899985 4


Q ss_pred             CcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387          166 SRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (298)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~  242 (298)
                      |..++-+.-...|..+.|-+..++.++   .|.++.-|+..++++..+.+......++.-+|.  +-++- .|..+|+|.
T Consensus       200 GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~--NaVih-~GhsnGtVS  276 (545)
T KOG1272|consen  200 GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY--NAVIH-LGHSNGTVS  276 (545)
T ss_pred             CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc--cceEE-EcCCCceEE
Confidence            455556666778889999886555443   378999999999999988877666656655543  35555 599999999


Q ss_pred             EEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          243 VEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       243 i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.-+.+. +..+.+|.++|++||+.++|+|+||+|.|.. |+|||++.-..+++|
T Consensus       277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTY  331 (545)
T ss_pred             ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeecccccccee
Confidence            99987654 5578899999999999999999999999999 999999998877765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=2.2e-15  Score=125.06  Aligned_cols=201  Identities=17%  Similarity=0.183  Sum_probs=142.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCce-EEEEeee-cCCceEEEEEec--CCCEEEEEeCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE-IFRRDFE-RGGGIGVVEMLF--RCNILALVGGGPDPQYP  154 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  154 (298)
                      +-..|+..|..+...--|+.||+++. ..|+||.+..... ....++. |.+++--+.|.+  -+++||.++       -
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------Y   78 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------Y   78 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------c
Confidence            34567778888888888999998876 5589999977653 2333332 788888888865  577888877       7


Q ss_pred             CCeEEEEeCCCCcEEEEe---ecCCceEEEEEeCC---e-EEEE-ECCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeC
Q 022387          155 LNKVMIWDDHQSRCIGEL---SFRSEVRSVKLRRD---R-IIVV-LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~---~~~~~v~~v~~~~~---~-l~v~-~~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~  225 (298)
                      |++|.||.-++++-.+..   .+...|.+++|-+.   . |+++ .||.|.|.+.++. .-..+.....+.+++.++++.
T Consensus        79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa  158 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA  158 (299)
T ss_pred             CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence            899999999887543322   24458999988653   2 2222 3689999988543 111111112234455555544


Q ss_pred             CC---C-----------eEEEEecCCCceEEEEEcCCc---ceEeecccccceeEEEECCCC----CEEEEEeCCCCEEE
Q 022387          226 VG---S-----------LVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLVR  284 (298)
Q Consensus       226 ~d---~-----------~~la~sGs~dg~v~i~~~~~~---~~~~~~~H~~~V~~l~fspdg----~~lAt~S~Dgt~Ir  284 (298)
                      |-   +           ..|| +|..|..|+||.++..   ...+|.+|+.-|+.+||.|.-    .+||++|+||+ |-
T Consensus       159 pa~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-vi  236 (299)
T KOG1332|consen  159 PASAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VI  236 (299)
T ss_pred             CcCCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EE
Confidence            32   1           3466 6999999999999884   344799999999999999973    68999999999 98


Q ss_pred             EEECC
Q 022387          285 IFNTL  289 (298)
Q Consensus       285 IWd~~  289 (298)
                      ||-.+
T Consensus       237 Iwt~~  241 (299)
T KOG1332|consen  237 IWTKD  241 (299)
T ss_pred             EEEec
Confidence            99866

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.65  E-value=3.5e-15  Score=129.87  Aligned_cols=206  Identities=15%  Similarity=0.217  Sum_probs=138.0

Q ss_pred             CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC
Q 022387           70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      |++..-........|.+.|+.|++.. +.++.+|.+++++.|-++-. ...+..  .+..+..+......+.++++|   
T Consensus        94 WnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcG---  166 (433)
T KOG0268|consen   94 WNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCG---  166 (433)
T ss_pred             EehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccC---
Confidence            33333333445578888999999998 77788888899999987653 211221  133333444444455555555   


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC---eEEEE-ECCeEEEEEcCCCeEEEEEeccC----------
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVV-LEQKIFVYNFADLKLLHQIETIA----------  214 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~l~v~-~~~~I~iwd~~~~~~i~~~~~~~----------  214 (298)
                            ..|.|||.+....+..++-. ..+.++.|++.   .|+++ .++.|.+||+++.++++++....          
T Consensus       167 ------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe  240 (433)
T KOG0268|consen  167 ------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPE  240 (433)
T ss_pred             ------ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcc
Confidence                  45899998887777777755 36888888874   34444 35789999988777665442110          


Q ss_pred             ------------------------------CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEee--ccccccee
Q 022387          215 ------------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIA  262 (298)
Q Consensus       215 ------------------------------~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~--~~H~~~V~  262 (298)
                                                    +...++++.++|.|+-++ +|+.|.+|+|+.........+  ..-...|.
T Consensus       241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv-sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~  319 (433)
T KOG0268|consen  241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV-SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF  319 (433)
T ss_pred             ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc-cccccceEEEeecCCCcchhhhhHhhhheee
Confidence                                          011245555666668887 599999999988765432211  11224699


Q ss_pred             EEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          263 CFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       263 ~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ||.||-|.+|+.+||+|+. ||+|...-
T Consensus       320 ~Vk~S~Dskyi~SGSdd~n-vRlWka~A  346 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGSDDGN-VRLWKAKA  346 (433)
T ss_pred             EEEEeccccEEEecCCCcc-eeeeecch
Confidence            9999999999999999999 99998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=4.4e-15  Score=132.11  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             CCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      .|++|++||+.++++...+.++ ..|.++.|++.   .++.++ +++|.+.|.+........-.....+..+++.+...+
T Consensus       264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~  343 (463)
T KOG0270|consen  264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN  343 (463)
T ss_pred             CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce
Confidence            7899999999999999999865 58999999874   333333 689999999842221111111233556666666544


Q ss_pred             eEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387          229 LVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .+++  |..||+|+..|...  +++.++++|.+.|.+|++++. -.+|+|+|.|++ |+||++..
T Consensus       344 ~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~  405 (463)
T KOG0270|consen  344 SFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDV  405 (463)
T ss_pred             eEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecC
Confidence            4444  89999999988764  567799999999999999965 578999999999 99999873

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=1.3e-14  Score=124.57  Aligned_cols=205  Identities=13%  Similarity=0.163  Sum_probs=142.2

Q ss_pred             CCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEE------cCC--------CceEE-------------------
Q 022387           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYN------CDP--------FREIF-------------------  120 (298)
Q Consensus        75 ~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~------~~~--------~~~~~-------------------  120 (298)
                      ........+|.+.|++|.|++.+.++++|+.|+ ..||.      +..        .+...                   
T Consensus       180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~  259 (481)
T KOG0300|consen  180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH  259 (481)
T ss_pred             ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence            334445578889999999999999999999876 45884      110        00000                   


Q ss_pred             --E---Eeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEE-
Q 022387          121 --R---RDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL-  192 (298)
Q Consensus       121 --~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~-  192 (298)
                        +   ..+. |.+.+.+..|...+...++++       =|++..+||+++++.+..+..+. ...-++.|+..-++.+ 
T Consensus       260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS-------WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs  332 (481)
T KOG0300|consen  260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS-------WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS  332 (481)
T ss_pred             eeeeeeeeeeccccceEehhhhcCcceeeeee-------ccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence              0   0000 222223333333444444444       47999999999999999888764 6666777876544443 


Q ss_pred             --CCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEEC
Q 022387          193 --EQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALT  267 (298)
Q Consensus       193 --~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fs  267 (298)
                        +.+.++||++ ....+..|++|...+.+..|..+.  . ++ +|+.|.+|+|||+.+..  +.+++ -.++++.|+.+
T Consensus       333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~-vV-SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs  407 (481)
T KOG0300|consen  333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--R-VV-SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVS  407 (481)
T ss_pred             ccCceeEeccchhhcceeeeecccccceeEEEEecCC--c-ee-ecCCCceEEEeeeccccCcceeee-cCCccceeEee
Confidence              3699999995 456677889998888888887763  3 33 69999999999998653  33444 46789999999


Q ss_pred             CCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          268 QDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       268 pdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ..++.+|.--++.. |||||+...+
T Consensus       408 ~g~~iIAiPhDNRq-vRlfDlnG~R  431 (481)
T KOG0300|consen  408 KGHPIIAIPHDNRQ-VRLFDLNGNR  431 (481)
T ss_pred             cCCceEEeccCCce-EEEEecCCCc
Confidence            98888888865555 9999987443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=2.6e-14  Score=122.74  Aligned_cols=197  Identities=13%  Similarity=0.141  Sum_probs=150.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+|...|.++.|-..|+.+++|+- .+..+||++++..+..... |++....+.-.+...++++++       .|-+.++
T Consensus       269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvTsS-------rDtTFRL  340 (481)
T KOG0300|consen  269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVTSS-------RDTTFRL  340 (481)
T ss_pred             eccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcceEEEEec-------cCceeEe
Confidence            468889999999999999999996 5677999999987666654 566666666666666666666       7899999


Q ss_pred             EeCCCC-cEEEEeecC-CceEEEEEeCCeEEEEE-C-CeEEEEEcCCCe-EEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          161 WDDHQS-RCIGELSFR-SEVRSVKLRRDRIIVVL-E-QKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       161 WD~~~~-~~~~~~~~~-~~v~~v~~~~~~l~v~~-~-~~I~iwd~~~~~-~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ||++.. +.+.-|+.+ ..|.++.|+.+.-++.+ + .+|++||++++. ++.++.. ..++.-++++...  .++|+ -
T Consensus       341 WDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~--~iIAi-P  416 (481)
T KOG0300|consen  341 WDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGH--PIIAI-P  416 (481)
T ss_pred             ccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCC--ceEEe-c
Confidence            999842 334445555 47999999876655554 3 699999998875 4555554 4566777877754  68887 6


Q ss_pred             CCCceEEEEEcCCcceE-----eecccccceeEEEECCCC--CEEEEEeCCCCEEEEEECCCC
Q 022387          236 LQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~-----~~~~H~~~V~~l~fspdg--~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ..+..|+++|++...+.     .-.+|..-|+|++|..+.  .-|.|++.|.. +-=|.+..-
T Consensus       417 hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~-v~gW~in~p  478 (481)
T KOG0300|consen  417 HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRM-VAGWKINTP  478 (481)
T ss_pred             cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccce-eeeeEeccc
Confidence            88889999999876543     456899999999998653  56889999998 889998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=5.9e-15  Score=136.63  Aligned_cols=197  Identities=10%  Similarity=0.183  Sum_probs=146.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeee-cCCceEEEEEe-cCCCEEEEEeCCCCCCCCCCeEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE-RGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .|..=|+.+....+|+.|++++.| +|++|+...........++ |..=+.++... .+...+|  +||     -|+.|.
T Consensus        71 ~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva--SgG-----LD~~If  143 (735)
T KOG0308|consen   71 HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA--SGG-----LDRKIF  143 (735)
T ss_pred             hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEE--ecC-----CCccEE
Confidence            455678888888899877777765 5899998766311111111 45556666663 3333333  333     579999


Q ss_pred             EEeCCCCc--EEEEee----------cCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe
Q 022387          160 IWDDHQSR--CIGELS----------FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       160 iWD~~~~~--~~~~~~----------~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      |||++++.  .+..++          ....|++++.++....++.   ++-+++||-++.+.+.++++|..-+.++-++.
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d  223 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND  223 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence            99999873  332222          1236899999887544443   47899999999999999999988888888777


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ++  ..++ +++.||+|++|++.... +.++..|+..|+++.-+|+-+++.+|+.||. |..=|+++
T Consensus       224 DG--t~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n  286 (735)
T KOG0308|consen  224 DG--TRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRN  286 (735)
T ss_pred             CC--CeEe-ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCC
Confidence            65  6665 59999999999998654 5689999999999999999999999999999 88888887

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.5e-13  Score=127.98  Aligned_cols=202  Identities=14%  Similarity=0.224  Sum_probs=149.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .++.|+++||+.+.+.||.|-.+| |-||++...- .....+  ..+..+..++|+ ++..|..++       .+|.|.-
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~-e~~RLFS~g-------~sg~i~E   94 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWA-EGGRLFSSG-------LSGSITE   94 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEc-cCCeEEeec-------CCceEEE
Confidence            456899999999999999998766 6799998742 222222  135677788887 455555656       4689999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||+.+.+....++.. +.+.+++.++  +.+++.+ +|.+.++++...++.....-......+.++++++++..+| +|+
T Consensus        95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs  173 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGS  173 (691)
T ss_pred             EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecc
Confidence            999999888777754 5899999876  4566654 4777777777777655443334445678888888888788 499


Q ss_pred             CCceEEEEEcCCcceEe-----e---cc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRTKF-----I---MA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~-----~---~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .||.|++||.+......     +   .. -..-|++|.|-.++ .||+|..-|+ |++||...|.+++.+
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~  241 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSH  241 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhh
Confidence            99999999998654221     1   11 23358899888765 6999999999 999999999987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.6e-13  Score=113.05  Aligned_cols=195  Identities=13%  Similarity=0.208  Sum_probs=145.5

Q ss_pred             CCCCCCeEEEEEcC----CCCEEEEEcCCeEEEE--EcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQ----DHGCFAAGTDHGFRIY--NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        82 ~~~~~~V~~v~fs~----dg~~lasgs~~gi~vw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      .+|.+.|+.++|-.    .|.+||+|+.+-.+||  |+.+++......- |.+.+..+ ..+++-.++.  |+     +|
T Consensus       133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilal-yswn~~m~~s--gs-----qd  203 (350)
T KOG0641|consen  133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILAL-YSWNGAMFAS--GS-----QD  203 (350)
T ss_pred             eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEE-EEecCcEEEc--cC-----CC
Confidence            67888999999964    3568888887554554  6766665443332 33333222 2344444433  33     78


Q ss_pred             CeEEEEeCCCCcEEEEeec--------CCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe
Q 022387          156 NKVMIWDDHQSRCIGELSF--------RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~--------~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      ++||+||++-..++..+..        .+.|.+++..+..-+.++   +....+||++.++.++.+..|...+.++.|++
T Consensus       204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp  283 (350)
T KOG0641|consen  204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP  283 (350)
T ss_pred             ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence            9999999998888877642        246888888875444333   46899999999999999999998888999888


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCcc-----eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..  .++. +|+.|..|++-|++...     +.....|+..+-.+.|+|..--|++.|.|++ +.+|-+.
T Consensus       284 ~a--~yll-t~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt-~tlwa~~  349 (350)
T KOG0641|consen  284 GA--HYLL-TCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT-ATLWALN  349 (350)
T ss_pred             Cc--eEEE-EecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce-EEEeccC
Confidence            75  6776 59999999998887542     3466789999999999999999999999999 9999764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.63  E-value=1.9e-14  Score=134.15  Aligned_cols=194  Identities=12%  Similarity=0.151  Sum_probs=141.9

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      .++.+..+|.+.|.|++...++. |++||- .+++||.......  ...- |...+-.+...+.. .+++++       .
T Consensus        92 ~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~--~l~g-H~asVWAv~~l~e~-~~vTgs-------a  159 (745)
T KOG0301|consen   92 EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY--SLQG-HTASVWAVASLPEN-TYVTGS-------A  159 (745)
T ss_pred             CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc--ccCC-cchheeeeeecCCC-cEEecc-------C
Confidence            34555678999999999989998 888886 5689997654433  2332 44555544444433 455544       6


Q ss_pred             CCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCC-eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          155 LNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD-RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~-~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      |++||+|..  +.+++++..|. -|..+++-++ .++.|. ++.|++|++ +++.+.++.+|.+.+.+++...+  +..+
T Consensus       160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~--~~~I  234 (745)
T KOG0301|consen  160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALS--DGLI  234 (745)
T ss_pred             cceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCC--CCeE
Confidence            899999997  66777787765 6888887665 666655 689999999 78888999999888877774443  3566


Q ss_pred             EEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      + +++.|++++||... .....+.--...|+++++-++|. +++|+.||. ||||-...
T Consensus       235 v-s~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~-VrVfT~~k  289 (745)
T KOG0301|consen  235 V-STGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGR-VRVFTVDK  289 (745)
T ss_pred             E-EecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCC-EEEeccCce-EEEEEecc
Confidence            6 58999999999987 33334443445899999999998 667777999 99998764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.63  E-value=1.1e-14  Score=134.50  Aligned_cols=204  Identities=15%  Similarity=0.199  Sum_probs=133.5

Q ss_pred             ccCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCc-----------------------eEE---EEeeecCCceE
Q 022387           80 TSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR-----------------------EIF---RRDFERGGGIG  131 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~-----------------------~~~---~~~~~~~~~~~  131 (298)
                      +..+|...|.+++|.++. ..|++|+.|| +.|||+.-..                       ...   ....++...+.
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence            356788899999999966 4788999887 7799984221                       000   00000222333


Q ss_pred             E---EEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe------ec--CC----ceEEEEEeC--C-eEEEEEC
Q 022387          132 V---VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL------SF--RS----EVRSVKLRR--D-RIIVVLE  193 (298)
Q Consensus       132 ~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~------~~--~~----~v~~v~~~~--~-~l~v~~~  193 (298)
                      .   +.+..+...+|.+++      .|+.|||||+++.......      .+  ++    .+.++....  . .++.|+|
T Consensus       219 ssvTvv~fkDe~tlaSaga------~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGA------ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             eeeEEEEEeccceeeeccC------CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            2   233445666777764      4799999999986554332      12  21    244554443  3 4555779


Q ss_pred             CeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCC
Q 022387          194 QKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD  269 (298)
Q Consensus       194 ~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspd  269 (298)
                      +.|++||+....  ++..+.++...-.-+.-.-.+|+++++ +|+.|+...+|.+..-.  ...+.+|...|++++|.|.
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~-SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL-SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe-ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            999999996432  333333322221122223345668888 69999999999998654  4578999999999999875


Q ss_pred             C-CEEEEEeCCCCEEEEEECCCC
Q 022387          270 G-QLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       270 g-~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      . .-+||+|+|-+ ++||++..|
T Consensus       372 ~~t~v~TcSdD~~-~kiW~l~~~  393 (720)
T KOG0321|consen  372 ATTPVATCSDDFR-VKIWRLSNG  393 (720)
T ss_pred             cCCCceeeccCcc-eEEEeccCc
Confidence            3 56788899999 999999766

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.63  E-value=2e-14  Score=121.99  Aligned_cols=195  Identities=11%  Similarity=0.114  Sum_probs=141.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceE-EEEeee----cCCceEEEEEec--CCCEEEEEeCCCCCCCCCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI-FRRDFE----RGGGIGVVEMLF--RCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~-~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~  156 (298)
                      +-.+|.||-|.|+++.||+-.+..|.+|+++..... ......    +......-.|++  +++.+++.+        |+
T Consensus       122 avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--------d~  193 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--------DS  193 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--------CC
Confidence            345899999999999999988888999999875541 111110    233344455654  455555554        68


Q ss_pred             eEEEEeCCCCcEEEEee--cCCceEEEEEeCCe---EEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCe
Q 022387          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDR---IIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~--~~~~v~~v~~~~~~---l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      ++..||+++..+...++  +.+.|..+.|+++.   ++.+++ +.|+|||.+. ..++.++..|.+.+.++.|++..|..
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence            89999999977766554  45679999999863   334443 7999999964 56788888899988888888876544


Q ss_pred             EEEEecCCCceEEEEEcC------------------------------CcceEeecccccceeEEEEC-CCCCEEEEEeC
Q 022387          230 VLVCPGLQKGQVRVEHYA------------------------------SKRTKFIMAHDSRIACFALT-QDGQLLATSST  278 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~------------------------------~~~~~~~~~H~~~V~~l~fs-pdg~~lAt~S~  278 (298)
                      +|  +|+.|..|.+|-..                              .+.+.++..|...|.+++|| .|.=.||+-|+
T Consensus       274 iL--s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY  351 (370)
T KOG1007|consen  274 IL--SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY  351 (370)
T ss_pred             EE--ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence            43  58889888886522                              11233678899999999998 56778999999


Q ss_pred             CCCEEEEEECC
Q 022387          279 KGTLVRIFNTL  289 (298)
Q Consensus       279 Dgt~IrIWd~~  289 (298)
                      ||. +-|=.+.
T Consensus       352 DGR-viIs~V~  361 (370)
T KOG1007|consen  352 DGR-VIISSVP  361 (370)
T ss_pred             Cce-EEeecCC
Confidence            999 7565543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.3e-13  Score=118.03  Aligned_cols=199  Identities=16%  Similarity=0.234  Sum_probs=128.3

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC--CceEE--EEeeecCCceEEEEEecC--CCEEEEEeCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIF--RRDFERGGGIGVVEMLFR--CNILALVGGGPDPQ  152 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~--~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  152 (298)
                      +-..|..-|.++.|.+-|+.+|+++.|+ ++|||...  .....  .... |++.+--+.|.+.  +..+|+++      
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS------   80 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCS------   80 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEe------
Confidence            3456777899999999999999998755 89999533  22222  2222 6787777777543  56667776      


Q ss_pred             CCCCeEEEEeCCCC-------cEEEE--e-ecCCceEEEEEeCCe----EEEE-ECCeEEEEEcCC--------------
Q 022387          153 YPLNKVMIWDDHQS-------RCIGE--L-SFRSEVRSVKLRRDR----IIVV-LEQKIFVYNFAD--------------  203 (298)
Q Consensus       153 ~~d~~v~iWD~~~~-------~~~~~--~-~~~~~v~~v~~~~~~----l~v~-~~~~I~iwd~~~--------------  203 (298)
                       -|++++||.-...       +-+..  + +-.+.|+.+.|.+.+    ++.+ .+|.+|||+..+              
T Consensus        81 -~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~  159 (361)
T KOG2445|consen   81 -YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ  159 (361)
T ss_pred             -cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence             6899999974211       11111  1 223466667665531    1222 135555554421              


Q ss_pred             -----------------------------------------------------CeEEEEEeccCCCcceEEEEeCC--CC
Q 022387          204 -----------------------------------------------------LKLLHQIETIANPKGLCAVSQGV--GS  228 (298)
Q Consensus       204 -----------------------------------------------------~~~i~~~~~~~~~~~~~~~s~~~--d~  228 (298)
                                                                           ...+.++..|..++..++++|.-  .-
T Consensus       160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                                                                 11222333445555566666542  12


Q ss_pred             eEEEEecCCCceEEEEEcCC---------------------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          229 LVLVCPGLQKGQVRVEHYAS---------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~---------------------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .+||+ ++.|| |+||.++.                     ..+..+..|++.|+.|.|+=.|..|++.|+||. ||+|.
T Consensus       240 ~~lAv-A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWk  316 (361)
T KOG2445|consen  240 HLLAV-ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWK  316 (361)
T ss_pred             eeEEE-eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehh
Confidence            56664 89999 99988762                     012357889999999999999999999999999 99997


Q ss_pred             CC
Q 022387          288 TL  289 (298)
Q Consensus       288 ~~  289 (298)
                      ..
T Consensus       317 an  318 (361)
T KOG2445|consen  317 AN  318 (361)
T ss_pred             hh
Confidence            54

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.62  E-value=3.5e-14  Score=134.75  Aligned_cols=198  Identities=14%  Similarity=0.181  Sum_probs=139.2

Q ss_pred             CeEEEEEcCCCC----EEEEEc-C-CeEEEEEcCCCce-EEEEeee----cCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           87 TLLHISFNQDHG----CFAAGT-D-HGFRIYNCDPFRE-IFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~----~lasgs-~-~gi~vw~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      +|...+|.-...    -+++.. + ..++.|++..... .++..-.    ....+.++++++.+|..++..       +.
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-------S~  469 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-------SK  469 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec-------cC
Confidence            666666654211    133333 3 4477998876432 2222210    124567777788888766655       45


Q ss_pred             CeEEEEeCCCCcEEEEe----ecCCceEEEEEeC-Ce-EEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          156 NKVMIWDDHQSRCIGEL----SFRSEVRSVKLRR-DR-IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~----~~~~~v~~v~~~~-~~-l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      |+|.+++.++|-....+    .+..+|..++... +. ++.+ .+|-+++||+.+..++.++..... ...+..+...  
T Consensus       470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-~~~iv~hr~s--  546 (910)
T KOG1539|consen  470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS-ITGIVYHRVS--  546 (910)
T ss_pred             CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC-cceeeeeehh--
Confidence            89999999999877776    4567899999875 33 3333 359999999998888888775433 2233333333  


Q ss_pred             eEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          229 LVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      .++|+ +-.|=.|+++|..+.++ ..|.+|...|++++|||||++|++++.|++ ||+||+.+|++|--
T Consensus       547 ~l~a~-~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~  613 (910)
T KOG1539|consen  547 DLLAI-ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDG  613 (910)
T ss_pred             hhhhh-hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeee
Confidence            45554 66777888877776654 589999999999999999999999999999 99999999998753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.8e-15  Score=147.71  Aligned_cols=202  Identities=14%  Similarity=0.218  Sum_probs=144.3

Q ss_pred             CeEEEEEcCCCCE----EEEEcCCe-EEEEEcCCC---c---eEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCC
Q 022387           87 TLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF---R---EIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYP  154 (298)
Q Consensus        87 ~V~~v~fs~dg~~----lasgs~~g-i~vw~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (298)
                      +-+.++|.+.|..    ||.|.+|| |.+|+....   .   .+.++.- |.+.|..+++.. .++.+|.++       +
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa-------~  137 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA-------D  137 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccC-------C
Confidence            5667999987775    88888877 789987652   1   1112221 788888888854 455666554       6


Q ss_pred             CCeEEEEeCCCCcEEE---EeecCCceEEEEEeCC--eEEE-EE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387          155 LNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD--RIIV-VL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~---~~~~~~~v~~v~~~~~--~l~v-~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      +|+|.|||+.+-+.-.   .....+.|.+++|+.+  ++++ +. ++++.|||++..+++..+..+.....+-.+.++++
T Consensus       138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence            7999999998743221   2234568999999975  3333 33 37999999998888877776544333445555555


Q ss_pred             --CeEEEEecCCCc-eEEEEEcCC--cceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          228 --SLVLVCPGLQKG-QVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       228 --~~~la~sGs~dg-~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                        .++++++++..- .|.+||+..  .+++++.+|...|.+|.|++.+ .+|+|++.|+. |-+|+.++|+.+.++
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGEL  292 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeec
Confidence              456664443322 566699774  4567889999999999999766 99999999999 999999999998775

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.62  E-value=2.1e-14  Score=139.62  Aligned_cols=179  Identities=19%  Similarity=0.218  Sum_probs=131.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc--C-CeEEEEEcCCCc------------eEEEEeeecCCceEEEEEecCCCEEEEEeCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGT--D-HGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs--~-~gi~vw~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (298)
                      +...|.+|+.+|||..+|+|+  - .|++||+.++.-            .+.... .|.+.+.++.|++++.++|+++  
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS--   88 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS--   88 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc--
Confidence            344699999999999999998  3 458899875431            111111 1788899999999999888877  


Q ss_pred             CCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       149 ~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                           +|+-|.||+.... ..      +.+..          .+++   .-+.+..+.+..+.+|...  +..+.++|++
T Consensus        89 -----DD~~v~iW~~~~~-~~------~~~fg----------s~g~---~~~vE~wk~~~~l~~H~~D--V~Dv~Wsp~~  141 (942)
T KOG0973|consen   89 -----DDRLVMIWERAEI-GS------GTVFG----------STGG---AKNVESWKVVSILRGHDSD--VLDVNWSPDD  141 (942)
T ss_pred             -----CcceEEEeeeccc-CC------ccccc----------cccc---ccccceeeEEEEEecCCCc--cceeccCCCc
Confidence                 6799999997641 00      01100          0000   1123455677788877655  4556666677


Q ss_pred             eEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .++| +++.|++|.||+..+ +.++++++|.+.|-.+.|.|-|+||||-|+|++ |+||++.+-.+.
T Consensus       142 ~~lv-S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-ikvwrt~dw~i~  206 (942)
T KOG0973|consen  142 SLLV-SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-LKVWRTSDWGIE  206 (942)
T ss_pred             cEEE-EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce-EEEEEcccceee
Confidence            8998 699999999999765 556799999999999999999999999999999 999997764443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.8e-14  Score=135.00  Aligned_cols=175  Identities=13%  Similarity=0.137  Sum_probs=137.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ++++++|+.+|+++|.|++|. |++-+++....+....- |++.+..+.+.+.++++|+++       .||+|++||+++
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss-------~dG~v~iw~~~~  169 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSS-------CDGKVQIWDLQD  169 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEe-------cCceEEEEEccc
Confidence            899999999999999999976 78999877665555544 688999999999999999998       689999999999


Q ss_pred             CcEEEEeec---------CCceEEEEEeCC---eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          166 SRCIGELSF---------RSEVRSVKLRRD---RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       166 ~~~~~~~~~---------~~~v~~v~~~~~---~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +.+...+..         ...+..++|+|+   .++.+.++.|++|+..+.....++.........+.+.++|.|.+||+
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            877655432         234566889986   44556789999999999988888776333333566667777899995


Q ss_pred             ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEE
Q 022387          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL  273 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~l  273 (298)
                       ++-||.|.|||.++-..   ..-...|.|++|-|++.-+
T Consensus       250 -s~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  250 -STLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             -eccCCcEEEEecccchh---ccccceeEEEecCCCCCee
Confidence             99999999999987221   2224579999999987644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.61  E-value=1.6e-13  Score=115.09  Aligned_cols=195  Identities=15%  Similarity=0.177  Sum_probs=144.5

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ++|.+.|-.++|+|. ...||+++. +.+++||....++....+.  .++--.+.|.+++..+++++       .|..|.
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--~~eni~i~wsp~g~~~~~~~-------kdD~it  131 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET--KGENINITWSPDGEYIAVGN-------KDDRIT  131 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec--cCcceEEEEcCCCCEEEEec-------CcccEE
Confidence            567778999999974 457777665 7799999999988777764  56666778888888887766       444555


Q ss_pred             EEeCCCCc------------------------------EEEEee------------cCCceEEEEEeCC--eEEEEE-CC
Q 022387          160 IWDDHQSR------------------------------CIGELS------------FRSEVRSVKLRRD--RIIVVL-EQ  194 (298)
Q Consensus       160 iWD~~~~~------------------------------~~~~~~------------~~~~v~~v~~~~~--~l~v~~-~~  194 (298)
                      ..|.++.+                              ++..+.            |.....|+.|+++  +++++. +-
T Consensus       132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA  211 (313)
T KOG1407|consen  132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA  211 (313)
T ss_pred             EEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc
Confidence            55544322                              222222            2234577778875  455544 35


Q ss_pred             eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEE
Q 022387          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLL  273 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~l  273 (298)
                      .+.+||+...-+++.|..+.-|+..++|+.++  .+|| +||.|-.|-|=+.+++ ++..+ .|.++...|+|+|...+|
T Consensus       212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg--~~lA-SaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVAWHPk~~LL  287 (313)
T KOG1407|consen  212 LVSLWDVDELICERCISRLDWPVRTLSFSHDG--RMLA-SASEDHFIDIAEVETGDRVWEI-PCEGPTFTVAWHPKRPLL  287 (313)
T ss_pred             eeeccChhHhhhheeeccccCceEEEEeccCc--ceee-ccCccceEEeEecccCCeEEEe-eccCCceeEEecCCCcee
Confidence            89999999999999999888888888888765  9999 6999999999666555 44444 488999999999999999


Q ss_pred             EEEeCC---------CCEEEEEECCC
Q 022387          274 ATSSTK---------GTLVRIFNTLD  290 (298)
Q Consensus       274 At~S~D---------gt~IrIWd~~t  290 (298)
                      |=+.+|         |+ +|||-+.+
T Consensus       288 AyA~ddk~~d~~reag~-vKiFG~~~  312 (313)
T KOG1407|consen  288 AYACDDKDGDSNREAGT-VKIFGLSN  312 (313)
T ss_pred             eEEecCCCCccccccce-eEEecCCC
Confidence            988765         46 78876543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=1.3e-13  Score=118.34  Aligned_cols=200  Identities=15%  Similarity=0.159  Sum_probs=136.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCC--CEEEEEeCCCCCCCCCCe
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNK  157 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~  157 (298)
                      ...|..+|++++.+  |.|+|+|+. ++|+|||+.....+...-. |.+.+..+.+...-  +.|+.++       .||.
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s-------dDG~  108 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS-------DDGH  108 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec-------CCCc
Confidence            46788899999987  789999986 7799999988766544432 56666666654332  2344444       6899


Q ss_pred             EEEEeCCCCcEEEEeecC-CceEEEEEeCC-eEE--EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRD-RII--VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~-~l~--v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      |.+|++..-.++..++.+ ..|+.++.||. .++  +..|+.+++||+-+++.-..++-. +....+.++  +.+..+++
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~--~~Gd~F~v  185 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWS--PQGDHFVV  185 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEc--CCCCEEEE
Confidence            999999998888888755 47999999985 333  345789999999776654333322 122234444  55566665


Q ss_pred             ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                        .....|-||...+..+.....-...+.|+.|- ++.+|++|++|+. |++||..++.++.+|
T Consensus       186 --~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~  245 (362)
T KOG0294|consen  186 --SGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEF  245 (362)
T ss_pred             --EeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceee
Confidence              23346777777665433211122446666664 4678999999999 999999988887665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=2.5e-14  Score=126.72  Aligned_cols=189  Identities=16%  Similarity=0.207  Sum_probs=134.3

Q ss_pred             EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      .+++|++||..||+|+.|| +|||++.....+....- |.+++..+.+++++..++..+       .| ..+||+++++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk~lasig-------~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGKFLASIG-------AD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCcEEEEec-------CC-ceEEEEeccCc
Confidence            7899999999999999877 88999766554332221 678899999999999999988       45 69999999997


Q ss_pred             EEEEee-cCC--ceEEEEEeCC----eEEE-EE---CCeEEEEEcCCC---eEE--EEEeccCCCcceEEEEeCCCCeEE
Q 022387          168 CIGELS-FRS--EVRSVKLRRD----RIIV-VL---EQKIFVYNFADL---KLL--HQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       168 ~~~~~~-~~~--~v~~v~~~~~----~l~v-~~---~~~I~iwd~~~~---~~i--~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      .+.... +..  ....+.|..+    .+.+ +.   .+.|+.||+...   ..+  ++.....+.+.+++++.  ++.++
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~--dGkf~  296 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD--DGKFL  296 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC--CCcEE
Confidence            766655 221  2334555433    2222 22   156777666321   111  11111223455566655  45999


Q ss_pred             EEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          232 VCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      |+ |+.+|.|.|++...-+..  .-++|...|+.|.|+||.+++++-|.|.+ ++|..+.-
T Consensus       297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            97 999999999887655433  55789999999999999999999999999 99987653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.59  E-value=6.7e-14  Score=130.51  Aligned_cols=193  Identities=13%  Similarity=0.129  Sum_probs=125.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEE-EEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGV-VEMLF-RCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|+.+++.+.. ++++|++ ++++||+-...+.+-...+. +.+-+.. +++.. +...+.+.+       .|.+
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-------~D~~   82 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-------MDTT   82 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec-------ccce
Confidence            5788899999988755 6778876 55899987544433322221 1111111 11111 111122222       3444


Q ss_pred             EEEEeCCCCcEEEE---------------------------------------eecC-CceEEEEEeCCeEE-EE-ECCe
Q 022387          158 VMIWDDHQSRCIGE---------------------------------------LSFR-SEVRSVKLRRDRII-VV-LEQK  195 (298)
Q Consensus       158 v~iWD~~~~~~~~~---------------------------------------~~~~-~~v~~v~~~~~~l~-v~-~~~~  195 (298)
                      +.+|.......+..                                       +..| ..|.++..-+...+ .+ .|.+
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKt  162 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKT  162 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcce
Confidence            44444433333322                                       2322 35555544333222 22 3578


Q ss_pred             EEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEE
Q 022387          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT  275 (298)
Q Consensus       196 I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt  275 (298)
                      |++|.-  ++.+++|.+|...+..+++-++.  .++  |++.||.|+.|++....+..+.+|+..|.+|+...++..++|
T Consensus       163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~fl--ScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFL--SCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             eeeccC--CchhhhhccchhheeeeEEecCC--CeE--eecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEE
Confidence            888864  67788999998888777776653  455  479999999999988888999999999999998888999999


Q ss_pred             EeCCCCEEEEEECC
Q 022387          276 SSTKGTLVRIFNTL  289 (298)
Q Consensus       276 ~S~Dgt~IrIWd~~  289 (298)
                      +|+|++ +|||+..
T Consensus       237 ~gEDrt-lriW~~~  249 (745)
T KOG0301|consen  237 TGEDRT-LRIWKKD  249 (745)
T ss_pred             ecCCce-EEEeecC
Confidence            999999 9999977

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.58  E-value=7.1e-13  Score=119.93  Aligned_cols=187  Identities=19%  Similarity=0.316  Sum_probs=130.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .-|.|++|.++|+.+ +|.. +.|.||+..+.+...... +|++++..+++..++.++-   |+     .|+.|..||-.
T Consensus       247 k~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS---Gg-----KDRki~~Wd~~  316 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS---GG-----KDRKIILWDDN  316 (626)
T ss_pred             eEEEEEEEcCCCCEE-eecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee---cC-----ccceEEecccc
Confidence            579999999999954 5554 447799998776544444 5899999999987776543   44     57999999932


Q ss_pred             CCcEEEEeec------------------------------------------CCceEEEEEeC--CeEEEEE-CCeEEEE
Q 022387          165 QSRCIGELSF------------------------------------------RSEVRSVKLRR--DRIIVVL-EQKIFVY  199 (298)
Q Consensus       165 ~~~~~~~~~~------------------------------------------~~~v~~v~~~~--~~l~v~~-~~~I~iw  199 (298)
                      - +.+++++.                                          ......++.++  +.++.+. ++.+++|
T Consensus       317 y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW  395 (626)
T KOG2106|consen  317 Y-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW  395 (626)
T ss_pred             c-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence            1 11111110                                          01222233333  2344443 5799999


Q ss_pred             EcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC
Q 022387          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (298)
Q Consensus       200 d~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D  279 (298)
                      +  +.+++.+... ..+..+.+|++  .+ .+|+ |+..|...+.|.++..+.+++.-++++++|+|+|+|.+||.||.|
T Consensus       396 ~--~~k~~wt~~~-~d~~~~~~fhp--sg-~va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  396 N--DHKLEWTKII-EDPAECADFHP--SG-VVAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             c--CCceeEEEEe-cCceeEeeccC--cc-eEEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence            9  6666666554 34455555555  44 6664 999999999998887776666558999999999999999999999


Q ss_pred             CCEEEEEECCCC
Q 022387          280 GTLVRIFNTLDG  291 (298)
Q Consensus       280 gt~IrIWd~~tg  291 (298)
                      +. |.||.+...
T Consensus       469 ~~-iyiy~Vs~~  479 (626)
T KOG2106|consen  469 NH-IYIYRVSAN  479 (626)
T ss_pred             Ce-EEEEEECCC
Confidence            99 999998854

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.57  E-value=6.5e-14  Score=126.34  Aligned_cols=193  Identities=10%  Similarity=0.139  Sum_probs=143.6

Q ss_pred             EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      .|++......|+++|+..+ ++|||++...+..... .|...+.++.+....+++|.++.|       |.|.|..+.+++
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-------Gdiiih~~~t~~  154 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-------GDIIIHGTKTKQ  154 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccC-------CcEEEEecccCc
Confidence            3444444458999998865 6799998543322222 156677777777778888888744       779999999988


Q ss_pred             EEEEeecC--CceEEEEEeC--C-eEEEEEC-CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecCCCce
Q 022387          168 CIGELSFR--SEVRSVKLRR--D-RIIVVLE-QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (298)
Q Consensus       168 ~~~~~~~~--~~v~~v~~~~--~-~l~v~~~-~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (298)
                      ...+|.+.  +.|.-+.+++  . .+.++.+ |.|.+||+..+.++..+. .|..|..-++|++..  ..|.++-+.|+.
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn--e~l~vsVG~Dkk  232 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN--EALLVSVGYDKK  232 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc--cceEEEecccce
Confidence            87788775  3565677765  2 3334444 899999998887766654 588888888888764  555556789999


Q ss_pred             EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       241 v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      |.+||...+..........+.++|+|+++|.+|+.|...|. |..||++..+
T Consensus       233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k  283 (673)
T KOG4378|consen  233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTK  283 (673)
T ss_pred             EEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCC
Confidence            99999987665544445679999999999999999999999 9899999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.57  E-value=5.3e-14  Score=118.06  Aligned_cols=61  Identities=15%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             CCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      +|+.++| +++.||.|+|+..++. ++..++.|...|++++|+||..++|.+|.|++ |-+|++
T Consensus       261 pD~KIlA-TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL  322 (323)
T KOG0322|consen  261 PDGKILA-TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL  322 (323)
T ss_pred             cCCcEEe-ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence            4668888 5889999999988764 56699999999999999999999999999999 999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.57  E-value=5.9e-13  Score=117.23  Aligned_cols=205  Identities=13%  Similarity=0.142  Sum_probs=142.9

Q ss_pred             CCCcccCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCc-------eEEEEeeecCCceEEEEEecCC-CEEEEE
Q 022387           76 PAESTSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRC-NILALV  145 (298)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  145 (298)
                      ..+.+..+|+++|..++|+|- ...||+|++|. +.||.+-...       .+..+.. |...++.+.|.+.- +.|+.+
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhc
Confidence            346677899999999999994 55799999976 7799874432       2223333 67788999998754 455555


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcce-EE
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGL-CA  221 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~-~~  221 (298)
                      +       .|++|.+||+.+++.+.++.+...|.++.|+.++-..++   |.+|||||.++++.+..-..|...... ..
T Consensus       151 g-------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  151 G-------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI  223 (472)
T ss_pred             c-------CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence            5       579999999999999999998889999999876544433   589999999999999887666543222 22


Q ss_pred             EEeCCCCeEEEEecC---CCceEEEEEcCCcc----eEeecccccceeEEEECCCCCEEEEEeC-CCCEEEEEECCCCcE
Q 022387          222 VSQGVGSLVLVCPGL---QKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL  293 (298)
Q Consensus       222 ~s~~~d~~~la~sGs---~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~tg~~  293 (298)
                      |-.++  . ++++|.   .+-.+.+||-+.-.    +.++...+ .|--==|.+|-+.+--+|. |+. ||-|.+.....
T Consensus       224 fl~~g--~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P  298 (472)
T KOG0303|consen  224 FLASG--K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPP  298 (472)
T ss_pred             EeccC--c-eeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCc
Confidence            22233  4 444554   35677888865422    12343333 3433346788776666654 777 99999887653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=3.7e-13  Score=115.74  Aligned_cols=199  Identities=14%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      +...|...|..+..--.+++|++++.++ |.+|++. ++.+....- .........++++++.++.++       -.-.|
T Consensus       182 f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GRFia~~g-------FTpDV  252 (420)
T KOG2096|consen  182 FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSG-------FTPDV  252 (420)
T ss_pred             cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCcEEEEec-------CCCCc
Confidence            3455666777788888899999999866 8899998 444433332 122344566788999888877       33459


Q ss_pred             EEEeCCC---C---cE--EEEeecC-CceEEEEEeCC--eEEEE-ECCeEEEEEcC-------CCeEEEEEec--cCCCc
Q 022387          159 MIWDDHQ---S---RC--IGELSFR-SEVRSVKLRRD--RIIVV-LEQKIFVYNFA-------DLKLLHQIET--IANPK  217 (298)
Q Consensus       159 ~iWD~~~---~---~~--~~~~~~~-~~v~~v~~~~~--~l~v~-~~~~I~iwd~~-------~~~~i~~~~~--~~~~~  217 (298)
                      ++|.+--   |   +.  +.++..+ +.|..++|+++  +++.+ -+|+++|||+.       +.+.+++...  +....
T Consensus       253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~  332 (420)
T KOG2096|consen  253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS  332 (420)
T ss_pred             eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC
Confidence            9998531   2   11  2233433 47999999864  34433 47999999983       2333333321  11222


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      .-+.++-.|.+..||+  +....+.++..+... ..++ +.|...|++|+|+++|+++||++ |+. +||+.-..|
T Consensus       333 ~p~RL~lsP~g~~lA~--s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~-vrv~~ntpg  404 (420)
T KOG2096|consen  333 EPVRLELSPSGDSLAV--SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRY-VRVIRNTPG  404 (420)
T ss_pred             CceEEEeCCCCcEEEe--ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-cee-eeeecCCCc
Confidence            2344555555688885  555678887665543 3333 57999999999999999999999 777 999874433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=1.5e-14  Score=141.21  Aligned_cols=201  Identities=17%  Similarity=0.190  Sum_probs=147.1

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEcCCCceEEEE-eeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRR-DFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|.+.|+.+.||+.+. +||+|+++| |.|||+...+.-+.. ...--..|.++.|... ...++.++       .++.
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s-------~sg~  185 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS-------PSGR  185 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC-------CCCC
Confidence            67888999999999765 999999977 889999764432222 1001345666666422 33344433       5689


Q ss_pred             EEEEeCCCCcEEEEeecCCc---eEEEEEeCC---eEEEEEC----CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCC
Q 022387          158 VMIWDDHQSRCIGELSFRSE---VRSVKLRRD---RIIVVLE----QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~~---v~~v~~~~~---~l~v~~~----~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      +.|||++..+.+..+.....   +..+.||++   .++++++    -.|.+||+|. ..++++++.|..-  ++++++.+
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--ilslsWc~  263 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--ILSLSWCP  263 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc--eeeeccCC
Confidence            99999999988888877653   778999985   5667664    3899999964 5566777777554  45555544


Q ss_pred             CCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCc
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ....++.++..|+.|.+|+.++.++. .+.....-+..+.|+|.- ..||.+|.||. |-|+.+.++.
T Consensus       264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~  330 (1049)
T KOG0307|consen  264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTD  330 (1049)
T ss_pred             CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCC
Confidence            44333336899999999999987654 777777789999999875 59999999999 9999988754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.55  E-value=1.2e-13  Score=123.43  Aligned_cols=198  Identities=10%  Similarity=0.111  Sum_probs=133.4

Q ss_pred             CCCCCCeEEEEEcCCC--CEEEEEcCCe-EEEEEcCCCce----EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg--~~lasgs~~g-i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      .-+..+|++++|+|--  +++|+|...| |-+||+.+.+.    ++...- |.+.|..+.+.+.....++++.      .
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS------y  255 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS------Y  255 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec------c
Confidence            3445699999999954  4778887766 67999953321    111111 5667888888765444344331      6


Q ss_pred             CCeEEEEeCCCCcE--EEEeecCC-ceEEEEEeCC-eEEEEEC--CeEEEEEcCCCeE-EEEEeccCCCcceEEEEeCCC
Q 022387          155 LNKVMIWDDHQSRC--IGELSFRS-EVRSVKLRRD-RIIVVLE--QKIFVYNFADLKL-LHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       155 d~~v~iWD~~~~~~--~~~~~~~~-~v~~v~~~~~-~l~v~~~--~~I~iwd~~~~~~-i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      ||+|++-|+++...  +...+... ....+.|+.. ..++..+  |...+||++..+. ...+..|...+..++++|--.
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            89999999987642  22222122 2344555532 3333332  7889999976654 444555666677777766432


Q ss_pred             CeEEEEecCCCceEEEEEcCC---cc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          228 SLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~---~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                       .+|| +++.|++.+|||+..   +.  ......|...|++..|||+|-.|+|.+.|.. |||||..
T Consensus       336 -~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss  399 (498)
T KOG4328|consen  336 -WFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSS  399 (498)
T ss_pred             -hhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecc
Confidence             4555 699999999999863   22  3456689999999999999877999999999 9999973

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.8e-13  Score=113.83  Aligned_cols=203  Identities=14%  Similarity=0.115  Sum_probs=145.4

Q ss_pred             ccCCCCCCeEEEEEcC--CCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~--dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      ...+|.++|..++|-.  -|.+||+.+-|| +.||.-+.++.....++. |...+..+++.++.-.+.+++++     .|
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas-----SD  125 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS-----SD  125 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee-----CC
Confidence            3468899999999985  799999999755 789988776532222221 67888999988776555555543     68


Q ss_pred             CeEEEEeCCCC-cEE-EEe--ecCCceEEEEEeCC----------------eEEEE-ECCeEEEEEcCCC--eEEEEEec
Q 022387          156 NKVMIWDDHQS-RCI-GEL--SFRSEVRSVKLRRD----------------RIIVV-LEQKIFVYNFADL--KLLHQIET  212 (298)
Q Consensus       156 ~~v~iWD~~~~-~~~-~~~--~~~~~v~~v~~~~~----------------~l~v~-~~~~I~iwd~~~~--~~i~~~~~  212 (298)
                      |+|.|.+.+.. ... ..+  .+.--|.++++.|-                +++.+ .|+.|+||+..+.  +.-+++..
T Consensus       126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~  205 (299)
T KOG1332|consen  126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG  205 (299)
T ss_pred             CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence            99999998764 221 112  23335777777542                24443 4689999999653  44456788


Q ss_pred             cCCCcceEEEEeCC--CCeEEEEecCCCceEEEEEcCCc----ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          213 IANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       213 ~~~~~~~~~~s~~~--d~~~la~sGs~dg~v~i~~~~~~----~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      |...+.-++.+|.-  ....|| +++.||.|.||....+    +.+.++....++..+.||..|..||.++-|.. |++|
T Consensus       206 H~dwVRDVAwaP~~gl~~s~iA-S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk-vtlw  283 (299)
T KOG1332|consen  206 HKDWVRDVAWAPSVGLPKSTIA-SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK-VTLW  283 (299)
T ss_pred             cchhhhhhhhccccCCCceeeE-EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE-EEEE
Confidence            88877777776643  124666 6999999999987643    12345556788999999999999999999998 9999


Q ss_pred             ECC
Q 022387          287 NTL  289 (298)
Q Consensus       287 d~~  289 (298)
                      .-.
T Consensus       284 ke~  286 (299)
T KOG1332|consen  284 KEN  286 (299)
T ss_pred             EeC
Confidence            854

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.53  E-value=5.2e-13  Score=125.11  Aligned_cols=207  Identities=14%  Similarity=0.106  Sum_probs=129.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcC---CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC------
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTD---HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------  151 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~---~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  151 (298)
                      ...++.+++|++||++|+|+|+|-.   ..++||++.....+....- |+-.+.++.+++...+++.++..-|.      
T Consensus        74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvd-HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~d  152 (1080)
T KOG1408|consen   74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVD-HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVND  152 (1080)
T ss_pred             ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhh-ccccceeeeecCCCcEEEeeccccceEEEhhh
Confidence            3456669999999999999999953   3488999988775433321 56677788887777776654432110      


Q ss_pred             --------------------CC---------CCCeEEEEeCCCCcEEE-------------Eee----------------
Q 022387          152 --------------------QY---------PLNKVMIWDDHQSRCIG-------------ELS----------------  173 (298)
Q Consensus       152 --------------------~~---------~d~~v~iWD~~~~~~~~-------------~~~----------------  173 (298)
                                          +.         ....|++|.++-+....             ++.                
T Consensus       153 Wr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAe  232 (1080)
T KOG1408|consen  153 WRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAE  232 (1080)
T ss_pred             hhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccccc
Confidence                                00         12346777654332100             000                


Q ss_pred             -------------cC-------------CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEec-cC-----------
Q 022387          174 -------------FR-------------SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIET-IA-----------  214 (298)
Q Consensus       174 -------------~~-------------~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~-~~-----------  214 (298)
                                   |.             ....|++.+.+++++++ ++.|++|+-.+.....+++. |.           
T Consensus       233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~  312 (1080)
T KOG1408|consen  233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP  312 (1080)
T ss_pred             ceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence                         00             01123444555666544 58888888776555544431 10           


Q ss_pred             C----------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC----cceEeecccccceeEEEECC------------
Q 022387          215 N----------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ------------  268 (298)
Q Consensus       215 ~----------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~----~~~~~~~~H~~~V~~l~fsp------------  268 (298)
                      +          .-.++++-+++....|.+ -..|-.++|||+..    .+...+..|...|+.|.--|            
T Consensus       313 ~~~~s~~~~a~fPD~IA~~Fdet~~klsc-VYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp  391 (1080)
T KOG1408|consen  313 EPKNSESSPAIFPDAIACQFDETTDKLSC-VYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLP  391 (1080)
T ss_pred             cccccccCcccCCceeEEEecCCCceEEE-EEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCC
Confidence            0          012566667766666665 57789999999874    23446778998888886544            


Q ss_pred             CCCEEEEEeCCCCEEEEEECCCC
Q 022387          269 DGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      .+ -|.|+|.|++ |||||+..+
T Consensus       392 ~~-cF~TCSsD~T-IRlW~l~~c  412 (1080)
T KOG1408|consen  392 RG-CFTTCSSDGT-IRLWDLAFC  412 (1080)
T ss_pred             cc-ceeEecCCCc-EEEeecccc
Confidence            22 4999999999 999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.53  E-value=5.6e-13  Score=116.79  Aligned_cols=194  Identities=10%  Similarity=0.160  Sum_probs=141.7

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcC-CeEEEEEcCCCceEEE-Eeee-cCCceEEEEEecCC-CEEEEEeCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQ--DHGCFAAGTD-HGFRIYNCDPFREIFR-RDFE-RGGGIGVVEMLFRC-NILALVGGGPDPQYPL  155 (298)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasgs~-~gi~vw~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d  155 (298)
                      ..|...=++++|||  .| .|++|.. ++|.+|...++.+.+- +.|. |...+.-++|++.. ..++.++       .|
T Consensus       208 ~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS-------~D  279 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS-------CD  279 (440)
T ss_pred             cccCccceeeeccccccc-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee-------cC
Confidence            45667789999999  33 3777766 7799998877665432 2232 56677777787654 4455555       78


Q ss_pred             CeEEEEeCCCC---cEEEEeecCCceEEEEEeCCeEEE--EE-CCeEEEEEcCC---CeEEEEEeccCCCcceEEEEeCC
Q 022387          156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIV--VL-EQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       156 ~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~l~v--~~-~~~I~iwd~~~---~~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      ++|+|||++.+   .++..-.+.+.|..+.|+.+.-++  +. +|+++|||+++   ++++.+|+-|..++.++.+++..
T Consensus       280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e  359 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE  359 (440)
T ss_pred             ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence            99999999987   466666677899999999764433  33 38999999975   46778999999999999999887


Q ss_pred             CCeEEEEecCCCceEEEEEcCCcc-----------------eEeecccc--cceeEEEECCC-CCEEEEEeCCCCEEEEE
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASKR-----------------TKFIMAHD--SRIACFALTQD-GQLLATSSTKGTLVRIF  286 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~~-----------------~~~~~~H~--~~V~~l~fspd-g~~lAt~S~Dgt~IrIW  286 (298)
                      +..+.|  ++.|..|.+||+....                 ...+--|.  ..|..|.|++. .-+|++.+.||-  .||
T Consensus       360 ~s~iaa--sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf--nVf  435 (440)
T KOG0302|consen  360 DSVIAA--SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF--NVF  435 (440)
T ss_pred             CceEEe--ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce--eEE
Confidence            655544  7888999999976321                 11344564  46999999986 467888888984  666


Q ss_pred             E
Q 022387          287 N  287 (298)
Q Consensus       287 d  287 (298)
                      .
T Consensus       436 k  436 (440)
T KOG0302|consen  436 K  436 (440)
T ss_pred             E
Confidence            4

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=4.8e-12  Score=118.03  Aligned_cols=197  Identities=12%  Similarity=0.129  Sum_probs=144.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ......|-+++|++.|+++.+|..+.|.-||+.+.+..+.... -.+.+-.++..+....+++.+       .||.+.++
T Consensus        66 g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~Igc-------ddGvl~~~  137 (691)
T KOG2048|consen   66 GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILAIGC-------DDGVLYDF  137 (691)
T ss_pred             cCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEEeec-------CCceEEEE
Confidence            3445689999999888888788778888999999988777764 255666667777777777766       57877788


Q ss_pred             eCCCCcEEEEeec---CCceEEEEEeCCeE--EEEE-CCeEEEEEcCCCeEEEEEe--c---cC-CCc--ceEEEEeCCC
Q 022387          162 DDHQSRCIGELSF---RSEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIE--T---IA-NPK--GLCAVSQGVG  227 (298)
Q Consensus       162 D~~~~~~~~~~~~---~~~v~~v~~~~~~l--~v~~-~~~I~iwd~~~~~~i~~~~--~---~~-~~~--~~~~~s~~~d  227 (298)
                      +...+.......+   .++|+++.|+++..  +.++ |+.|++||...+..++.+.  .   .. .+.  ..+.+-.+  
T Consensus       138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--  215 (691)
T KOG2048|consen  138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--  215 (691)
T ss_pred             ecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--
Confidence            8877776655544   35899999999765  4433 5789999998777666221  1   11 222  22333322  


Q ss_pred             CeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                       ..|| +|...|+|.+||.....+. .++.|.+.|.||+-++++.++.+++.|+. |--+...++
T Consensus       216 -~tI~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~-ii~~~~~~~  277 (691)
T KOG2048|consen  216 -STIA-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK-IIQYSLTTN  277 (691)
T ss_pred             -CcEE-EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc-eEEEEecCC
Confidence             4555 4999999999999887654 78999999999999999999999999999 444444443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=2e-12  Score=110.70  Aligned_cols=193  Identities=15%  Similarity=0.172  Sum_probs=132.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...+...|..|.|+|.+..|++++-|| +++|+...........  |++++  +++.|.....++.++      .|+.|+
T Consensus         9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~pl--L~c~F~d~~~~~~G~------~dg~vr   78 (323)
T KOG1036|consen    9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPL--LDCAFADESTIVTGG------LDGQVR   78 (323)
T ss_pred             CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCce--eeeeccCCceEEEec------cCceEE
Confidence            344556899999999887777766655 8999998875433333  35544  444554444444443      579999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeC--CeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      .+|+.++.....-.+...|.++...+  +.++.+ .+++|++||.++....-++.... .+.++.+  .+  ..|++ |.
T Consensus        79 ~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g--~~LvV-g~  152 (323)
T KOG1036|consen   79 RYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SG--NRLVV-GT  152 (323)
T ss_pred             EEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cC--CEEEE-ee
Confidence            99999998877778888999999874  333333 37899999998755544444332 2333333  32  44443 88


Q ss_pred             CCceEEEEEcCCcceEe---ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          237 QKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~---~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .+-.|.+||+.+.....   -..-+-.++||++-|++.-+|.+|-||. |-+=.+..
T Consensus       153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~  208 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDD  208 (323)
T ss_pred             cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCC
Confidence            89999999987644321   1223346999999999999999999998 76654443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.51  E-value=4.2e-13  Score=113.98  Aligned_cols=200  Identities=14%  Similarity=0.151  Sum_probs=141.6

Q ss_pred             ccCCCCCCeEEEEEcC-CCCEEEEEcC--------CeEEEEEcCCC---------ceEEEEeeecCCceEEEEEecCCCE
Q 022387           80 TSSSPPPTLLHISFNQ-DHGCFAAGTD--------HGFRIYNCDPF---------REIFRRDFERGGGIGVVEMLFRCNI  141 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~-dg~~lasgs~--------~gi~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  141 (298)
                      ....+.+.|..++=+| |.+.|++.-.        .++.||.+...         +.+....-.+.+.+.++.|.+++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            3355667899999998 5566776433        23669987432         1222222113567889999998888


Q ss_pred             EEEEeCCCCCCCCCCeEEEEeCCCCcE-EEEeec------CCceEEEEEeC----CeEEEEECCeEEEEEcCCCeEEEEE
Q 022387          142 LALVGGGPDPQYPLNKVMIWDDHQSRC-IGELSF------RSEVRSVKLRR----DRIIVVLEQKIFVYNFADLKLLHQI  210 (298)
Q Consensus       142 ~~~~~~~~~~~~~d~~v~iWD~~~~~~-~~~~~~------~~~v~~v~~~~----~~l~v~~~~~I~iwd~~~~~~i~~~  210 (298)
                      ++...        |+.|.+|++..+.. +.++..      ....++-.|++    +.+++..++++..||+++++....+
T Consensus       138 lasm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI  209 (370)
T KOG1007|consen  138 LASMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI  209 (370)
T ss_pred             eEEec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence            87765        68899999988765 333322      22445555655    3566666789999999999887777


Q ss_pred             ec-cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEE
Q 022387          211 ET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIF  286 (298)
Q Consensus       211 ~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIW  286 (298)
                      .. |.+-+..+.|++  +.+.+.++|+.||.|+|||....  ++.++.+|.--|++|.|+|. .+++.|||.|.. |.+|
T Consensus       210 ~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Ls  286 (370)
T KOG1007|consen  210 EDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLS  286 (370)
T ss_pred             hhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEE
Confidence            54 544444445544  44555557999999999998753  56789999999999999987 489999999999 9999


Q ss_pred             ECCC
Q 022387          287 NTLD  290 (298)
Q Consensus       287 d~~t  290 (298)
                      -..+
T Consensus       287 ca~s  290 (370)
T KOG1007|consen  287 CASS  290 (370)
T ss_pred             eccc
Confidence            7653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.51  E-value=3.1e-12  Score=115.82  Aligned_cols=196  Identities=16%  Similarity=0.243  Sum_probs=147.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe---------EEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG---------FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGP  149 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g---------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  149 (298)
                      ...|+..|.|++.+||-..+|+|-..|         +|+||..+...+...-+ -+.++.+++++.  .+..+..+..+ 
T Consensus       100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-f~~GV~~vaFsk~~~G~~l~~vD~s-  177 (626)
T KOG2106|consen  100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-FDRGVTCVAFSKINGGSLLCAVDDS-  177 (626)
T ss_pred             ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecc-ccccceeeeecccCCCceEEEecCC-
Confidence            367888999999999999999875422         78999777666555543 256788888864  34555555544 


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeC---CeEEEEECCeEEEEEcCCCeEEEEEe---ccCCCcceEEE
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVVLEQKIFVYNFADLKLLHQIE---TIANPKGLCAV  222 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~---~~l~v~~~~~I~iwd~~~~~~i~~~~---~~~~~~~~~~~  222 (298)
                          .+.-+.+||++.+....+++... -|....|+|   +.+..++.+.+.+|+.+.+.+.++..   .++. ..+.++
T Consensus       178 ----~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v  252 (626)
T KOG2106|consen  178 ----NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCV  252 (626)
T ss_pred             ----CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEE
Confidence                45778999999988777776554 567788987   45566667999999998877666543   2333 445556


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .+.+++..+  +|..+|.|.||+.....+. ...+|.+.|.+++.-.+|.+|- |+.|+. |-.||
T Consensus       253 ~F~engdvi--TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk-i~~Wd  314 (626)
T KOG2106|consen  253 TFLENGDVI--TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK-IILWD  314 (626)
T ss_pred             EEcCCCCEE--eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce-EEecc
Confidence            666666766  4999999999999776543 4459999999999999998776 999999 99999

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.50  E-value=1.3e-12  Score=111.16  Aligned_cols=201  Identities=10%  Similarity=0.108  Sum_probs=133.7

Q ss_pred             CCCCCCeEEEEEcCCCC-----EEEEEcCCeEEEEEcCCCc--eEEEEeee------cCCceEEEEEe-cCCCEEEEEeC
Q 022387           82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFR--EIFRRDFE------RGGGIGVVEML-FRCNILALVGG  147 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-----~lasgs~~gi~vw~~~~~~--~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~  147 (298)
                      ..|+-+++.+.|.||.+     +||+ +.|-+|+|.+....  ......+.      +...+....|. -+++++.+++ 
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec-
Confidence            46777999999999873     4555 46778999886321  11111110      12233333442 2466666666 


Q ss_pred             CCCCCCCCCeEEEEeCCCCc----EEEEeecCCceEEEEEeC---CeEEEE-ECCeEEEEEcCCCeEEEEEeccCC-Ccc
Q 022387          148 GPDPQYPLNKVMIWDDHQSR----CIGELSFRSEVRSVKLRR---DRIIVV-LEQKIFVYNFADLKLLHQIETIAN-PKG  218 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~----~~~~~~~~~~v~~v~~~~---~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~-~~~  218 (298)
                            -|-+..|||++++.    ..+-+.|..+|..++|..   +.++.+ .+|.||+||++..+--..+..... ...
T Consensus       171 ------iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p  244 (364)
T KOG0290|consen  171 ------IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP  244 (364)
T ss_pred             ------ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence                  78999999999973    234467788999999976   334433 479999999986543222222222 223


Q ss_pred             eEEEEeCC-CCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCCC
Q 022387          219 LCAVSQGV-GSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       219 ~~~~s~~~-d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ...+++.. |-.++|+-+.....|.|-|+..  .++..+++|.+.|+.|+|.|. ...|+|+++|.. +-|||+...
T Consensus       245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~  320 (364)
T KOG0290|consen  245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQM  320 (364)
T ss_pred             ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccc
Confidence            44455432 3366665456666788877764  356689999999999999986 689999998887 999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.50  E-value=1.6e-13  Score=124.10  Aligned_cols=162  Identities=21%  Similarity=0.271  Sum_probs=110.9

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC---cEEEEeec---CCceEEEEEeCC--eEEEEEC-CeE
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSF---RSEVRSVKLRRD--RIIVVLE-QKI  196 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~---~~~~~~~~---~~~v~~v~~~~~--~l~v~~~-~~I  196 (298)
                      |+.-+..+..+.....+.+++        .+.|||||+...   ..+..+..   ..-+.++.+.++  .|++++. .++
T Consensus       418 HGEvVcAvtIS~~trhVyTgG--------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGG--------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             cCcEEEEEEecCCcceeEecC--------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence            555556666665555555544        478999998653   22333332   223556666554  4444443 699


Q ss_pred             EEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEE
Q 022387          197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLAT  275 (298)
Q Consensus       197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt  275 (298)
                      .|||+....+-.+.+.......+.++..++|..+.+ ++-.||.|.|||+.+..+ ..|++|...+.||.+++||..|=|
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcF-sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT  568 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT  568 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceee-eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec
Confidence            999997655422222222222333444444435444 689999999999988764 589999999999999999999999


Q ss_pred             EeCCCCEEEEEECCCCcEEEec
Q 022387          276 SSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       276 ~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+-|.+ ||-||+++|+++.++
T Consensus       569 GGlDnt-vRcWDlregrqlqqh  589 (705)
T KOG0639|consen  569 GGLDNT-VRCWDLREGRQLQQH  589 (705)
T ss_pred             CCCccc-eeehhhhhhhhhhhh
Confidence            999999 999999999987664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.49  E-value=3e-12  Score=115.78  Aligned_cols=178  Identities=17%  Similarity=0.226  Sum_probs=131.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCE-EEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|++|.++-...|||+++.+| |.|-.+.+...........+..+..+.++..... |.+++       ++|.|.
T Consensus       118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as-------d~G~Vt  190 (673)
T KOG4378|consen  118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS-------DKGAVT  190 (673)
T ss_pred             cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec-------cCCeEE
Confidence            56778999999999999999999977 7788887766543333211345567777665554 44444       679999


Q ss_pred             EEeCCCCcEEEEee--cCCceEEEEEeCC--eEEE--EECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIV--VLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~--~~~~v~~v~~~~~--~l~v--~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +||+.....+..+.  |..+...++|++.  .+++  +.|.+|.+||++..+...++.- ..|...++|..++  .+|++
T Consensus       191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G--~~L~a  267 (673)
T KOG4378|consen  191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECG--TYLCA  267 (673)
T ss_pred             EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCc--eEEEe
Confidence            99998877765543  3457777888763  2332  3478999999987776665543 4566677776654  88885


Q ss_pred             ecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCC
Q 022387          234 PGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDG  270 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg  270 (298)
                       |+..|.|..||+...  ++.++.+|+..|++|+|-|.-
T Consensus       268 -G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  268 -GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             -ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence             999999999998765  467899999999999998764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.48  E-value=2.5e-12  Score=109.60  Aligned_cols=161  Identities=16%  Similarity=0.227  Sum_probs=111.8

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc------------EEEEeecC----CceEEEEEeC--Ce
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR------------CIGELSFR----SEVRSVKLRR--DR  187 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~------------~~~~~~~~----~~v~~v~~~~--~~  187 (298)
                      |.+++..+.+......+.+.+|      .|+.|.+||+++-.            ++...++.    -.|..+.|-|  ..
T Consensus        42 HgGsvNsL~id~tegrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             CCCccceeeeccccceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            4566666666543333333332      57999999987632            11111221    2456666644  45


Q ss_pred             EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC-CeEEEEecCCCceEEEEEcCCcce-EeecccccceeE
Q 022387          188 IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC  263 (298)
Q Consensus       188 l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d-~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~  263 (298)
                      ++...  +.++++||..+.+....|+-. ..+...++++-.. +.++|+ |..+-.|++-|+..+.. .++.+|...|-+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~-gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAA-GTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEE-ecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            55543  689999999999888877643 3345555555332 477774 99999999999988765 599999999999


Q ss_pred             EEECCCC-CEEEEEeCCCCEEEEEECCCC-cEEE
Q 022387          264 FALTQDG-QLLATSSTKGTLVRIFNTLDG-TLLQ  295 (298)
Q Consensus       264 l~fspdg-~~lAt~S~Dgt~IrIWd~~tg-~~l~  295 (298)
                      |.|||.. -.|||||.||. ||+||++.. .|+.
T Consensus       194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~  226 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFR  226 (397)
T ss_pred             EEeccCceeEEEecCCCce-EEEEEeecccceeE
Confidence            9999975 57899999999 999999865 4443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.48  E-value=1.6e-12  Score=115.06  Aligned_cols=115  Identities=11%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE---EEEee-cCCceEEEEEeCC--eEEEEE-CCeEEE
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFV  198 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~---~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~i  198 (298)
                      |...+-.+.+++++.++|.++       .|.+..+|++.....   ..++. +..+|..+.|+|+  .+++|. +..+++
T Consensus       223 htdEVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  223 HTDEVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             CCCcEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            567788888899999999988       789999999765432   34444 4568999999985  444443 578999


Q ss_pred             EEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc
Q 022387          199 YNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (298)
Q Consensus       199 wd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~  250 (298)
                      ||..++.+.+.+... ...+.+|+..||+  ..+++ |+.|+.|..|+.+...
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~-Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVT-GSPDRTIIMWDLDGNI  345 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCC--ceeEe-cCCCCcEEEecCCcch
Confidence            999999998887653 4455566666654  77774 9999999999976543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.47  E-value=1.4e-12  Score=118.25  Aligned_cols=195  Identities=12%  Similarity=0.174  Sum_probs=127.5

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCce---EEEEeeecCC--ceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFRE---IFRRDFERGG--GIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      .+|...++|.+|+|+.+ .+.+.+. .++|||++...+.   ++........  .+..+.|..++..+|.+.       .
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-------~  337 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-------L  337 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-------c
Confidence            56778999999999764 4555555 5599999976542   2222211122  234555666677666555       6


Q ss_pred             CCeEEEEeCCCCcE--EEE--eecC--CceEEEEEeCCeEEEE---ECCeEEEEEcCCCe-EEEEEeccC--CCcceEEE
Q 022387          155 LNKVMIWDDHQSRC--IGE--LSFR--SEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-LLHQIETIA--NPKGLCAV  222 (298)
Q Consensus       155 d~~v~iWD~~~~~~--~~~--~~~~--~~v~~v~~~~~~l~v~---~~~~I~iwd~~~~~-~i~~~~~~~--~~~~~~~~  222 (298)
                      ||.|.+||......  ...  -.|.  +.|.+|.|+.+.-.++   .++++++||+++.+ ++.+..+-.  .+..-|+|
T Consensus       338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F  417 (641)
T KOG0772|consen  338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF  417 (641)
T ss_pred             CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence            79999999754321  111  1222  3799999998654444   36899999998754 444444333  23445667


Q ss_pred             EeCCCCeEEEEecCC------CceEEEEEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          223 SQGVGSLVLVCPGLQ------KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       223 s~~~d~~~la~sGs~------dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +++.  .+|+ +|..      .|.+.+++..+ ..+..+...+..|..+.|+|.-+.|..|+.||+ ++|+=
T Consensus       418 SPd~--kli~-TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~-~~vyY  485 (641)
T KOG0772|consen  418 SPDD--KLIL-TGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT-AHVYY  485 (641)
T ss_pred             CCCc--eEEE-ecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc-eEEEE
Confidence            6654  6666 4543      67788877654 445566666788999999999877777888999 88863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=6.7e-13  Score=121.45  Aligned_cols=208  Identities=13%  Similarity=0.189  Sum_probs=136.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce--------EEEEee-ecCCceEEEEEecCCCEEEEEeCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--------IFRRDF-ERGGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      ..+.|+.+|.|+++.+++..+.+|+.|| |+.|++.+..-        ...-.+ .|...+..+.++.....++.++   
T Consensus       339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs---  415 (577)
T KOG0642|consen  339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS---  415 (577)
T ss_pred             EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec---
Confidence            3478999999999999999999999866 88996632110        011111 1455566666776666777776   


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeec---CCceEEEEEeCCeE-EEEECCeEEEEEcCCCeEEEEEeccC---CC-----c
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDRI-IVVLEQKIFVYNFADLKLLHQIETIA---NP-----K  217 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~---~~~v~~v~~~~~~l-~v~~~~~I~iwd~~~~~~i~~~~~~~---~~-----~  217 (298)
                          .|++|++|+...... ..+..   +.--..+++-.-.+ ....+...+.+.+.+++....+....   .+     .
T Consensus       416 ----~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~  490 (577)
T KOG0642|consen  416 ----SDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP  490 (577)
T ss_pred             ----CCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence                789999999877655 22221   22334455543332 22234455555554444333332211   11     1


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ....+-.++.+.+.. ++..|+.|+++|..... +....+|...|+++++.|+|.+|++++.|+. |++|.+....|+.+
T Consensus       491 ~in~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~e  568 (577)
T KOG0642|consen  491 QINKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLE  568 (577)
T ss_pred             ccceEEecCCCCeeE-ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeec
Confidence            122222333334444 58999999998877654 5588899999999999999999999999999 99999988887765


Q ss_pred             c
Q 022387          297 G  297 (298)
Q Consensus       297 ~  297 (298)
                      .
T Consensus       569 s  569 (577)
T KOG0642|consen  569 S  569 (577)
T ss_pred             c
Confidence            4

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.9e-12  Score=115.95  Aligned_cols=191  Identities=14%  Similarity=0.244  Sum_probs=136.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..+.....++|+++||..+..| |.|....+.+.+...++  ++.+..++++.++..+.+++       .+|.|.+||++
T Consensus       304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk~l~~~~-------~~GeV~v~nl~  374 (514)
T KOG2055|consen  304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSKELLASG-------GTGEVYVWNLR  374 (514)
T ss_pred             chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCcEEEEEc-------CCceEEEEecC
Confidence            3677788899999999999977 56888888888877776  78888888888887776666       46899999999


Q ss_pred             CCcEEEEeecCCce----EEEEEeCCeEEEEEC-CeEEEEEcC------CCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          165 QSRCIGELSFRSEV----RSVKLRRDRIIVVLE-QKIFVYNFA------DLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       165 ~~~~~~~~~~~~~v----~~v~~~~~~l~v~~~-~~I~iwd~~------~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ...+++.+.-.+.|    .|++.++..++++++ |-|.|||..      +.+++.++.--...+..+.|++  |.++||+
T Consensus       375 ~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~--d~qiLAi  452 (514)
T KOG2055|consen  375 QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH--DAQILAI  452 (514)
T ss_pred             CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc--chhhhhh
Confidence            99999888755433    344456677777765 899999964      2444444432222344455554  5588886


Q ss_pred             ecCC--CceEEEEEcCCcceE-eec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          234 PGLQ--KGQVRVEHYASKRTK-FIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       234 sGs~--dg~v~i~~~~~~~~~-~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                       +|.  +..+++-.+-.-.+. .+.   .--+.|+||+|||.|-+||.|-++|. ++||.+.
T Consensus       453 -aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~  512 (514)
T KOG2055|consen  453 -ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH  512 (514)
T ss_pred             -hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence             443  345666443322211 222   22356999999999999999999999 9999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.46  E-value=2.7e-12  Score=110.61  Aligned_cols=184  Identities=18%  Similarity=0.182  Sum_probs=133.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEc-CCCceEEEE------eeecCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeE
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNC-DPFREIFRR------DFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v  158 (298)
                      .-.+++|+|||++|.+|-...|+|||+ .+++..-..      ++...+-+.+.++++... .++..+       --+.+
T Consensus       160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-------Y~q~~  232 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-------YGQRV  232 (406)
T ss_pred             hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec-------cccee
Confidence            456899999999999999999999998 444322111      110123344444554433 445544       23567


Q ss_pred             EEEeCCCCcEEEEee-cCCceEEEEEeC--CeEEEEE--CCeEEEEEcCC-CeEEEEEeccCC-CcceEEEEeCCCCeEE
Q 022387          159 MIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVL--EQKIFVYNFAD-LKLLHQIETIAN-PKGLCAVSQGVGSLVL  231 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~-~~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~-~~~i~~~~~~~~-~~~~~~~s~~~d~~~l  231 (298)
                      -|+....+..+..+- +.+-|+.+.|++  +.+++..  +.+|.+||++. ..++..+..|.. ...-+-|.-++++++|
T Consensus       233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L  312 (406)
T KOG2919|consen  233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL  312 (406)
T ss_pred             eeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee
Confidence            777766666655554 445899999986  4566654  47999999975 456667776654 5667888888899999


Q ss_pred             EEecCCCceEEEEEcCC-c-ceEeecccccceeEEEECCCCCEEEEEeC
Q 022387          232 VCPGLQKGQVRVEHYAS-K-RTKFIMAHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~-~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                      | +|+.+|.|++||++. . .+..+..|+..|+.++++|--.++||+|-
T Consensus       313 a-sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  313 A-SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             e-ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            9 699999999999986 3 36678889999999999999999999973

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=6.7e-13  Score=122.22  Aligned_cols=192  Identities=16%  Similarity=0.206  Sum_probs=143.6

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC----CeEEEEEcCCCce--EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      +.-.|...|+.+.|+.+|+|||+-..    .++.|..+.....  -|.+.   .+.+..+.+.+....+++++       
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks---kG~vq~v~FHPs~p~lfVaT-------  585 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS---KGLVQRVKFHPSKPYLFVAT-------  585 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc---CCceeEEEecCCCceEEEEe-------
Confidence            33456779999999999999998765    4466776654332  22222   56677777777777777776       


Q ss_pred             CCCeEEEEeCCCCcEEEEeecC-CceEEEEEeC--CeEEEEE-CCeEEEEEc-CCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVL-EQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~-~~~I~iwd~-~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                       .+.|+|||+..+..+.++-.. ..|..++.|+  +.+++++ ++.+..||+ ...++.+++.-|...+..++++...  
T Consensus       586 -q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry--  662 (733)
T KOG0650|consen  586 -QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY--  662 (733)
T ss_pred             -ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc--
Confidence             477999999987766655433 4577788887  6666665 689999999 4567778888888877777777654  


Q ss_pred             eEEEEecCCCceEEEEE-c-----CCc----ceEeecccccc----eeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          229 LVLVCPGLQKGQVRVEH-Y-----ASK----RTKFIMAHDSR----IACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~-~-----~~~----~~~~~~~H~~~----V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      .++| +|+.||.+.|+- +     ...    +++.+++|...    |-.+.|+|...+|.|++.||+ ||+|
T Consensus       663 PLfa-s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t-irlf  732 (733)
T KOG0650|consen  663 PLFA-SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT-IRLF  732 (733)
T ss_pred             ceee-eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCce-EEee
Confidence            7777 699999999932 1     122    24578999876    999999999999999999999 9998

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.44  E-value=1.2e-12  Score=112.96  Aligned_cols=198  Identities=16%  Similarity=0.171  Sum_probs=136.9

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ++|...|+.|.|.|+. +++++++.|. +|+||+++..++...--.  |...+..+.++.+++.++.+|       .|..
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG-------mDhs  204 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG-------MDHS  204 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC-------Ccce
Confidence            6788899999999976 6888998755 899999999876654322  667788888888888776666       7899


Q ss_pred             EEEEeCCCCcEEEEe----e---------cC----------------CceEEEEEeCCeEEE-EECCeEEEEEcCC-Ce-
Q 022387          158 VMIWDDHQSRCIGEL----S---------FR----------------SEVRSVKLRRDRIIV-VLEQKIFVYNFAD-LK-  205 (298)
Q Consensus       158 v~iWD~~~~~~~~~~----~---------~~----------------~~v~~v~~~~~~l~v-~~~~~I~iwd~~~-~~-  205 (298)
                      +++|++...+....+    .         +.                ..|-|+.|-.++++. ..++.|.+|.... .+ 
T Consensus       205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~  284 (385)
T KOG1034|consen  205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES  284 (385)
T ss_pred             EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhh
Confidence            999998743221111    0         10                011222222333433 3468999998732 11 


Q ss_pred             ------------EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce---Eeeccc--ccceeEEEECC
Q 022387          206 ------------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAH--DSRIACFALTQ  268 (298)
Q Consensus       206 ------------~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~---~~~~~H--~~~V~~l~fsp  268 (298)
                                  .+.+++-....+.-+.|++++-+..||+ |...|.|.+||++....   .++..+  .+.|+..+||.
T Consensus       285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~-gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~  363 (385)
T KOG1034|consen  285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL-GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR  363 (385)
T ss_pred             hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh-ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc
Confidence                        1223333333345678888888888986 99999999999986543   234333  45799999999


Q ss_pred             CCCEEEEEeCCCCEEEEEEC
Q 022387          269 DGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ||.+|+...+|++ |--||.
T Consensus       364 dgs~lv~vcdd~~-Vwrwdr  382 (385)
T KOG1034|consen  364 DGSILVLVCDDGT-VWRWDR  382 (385)
T ss_pred             cCcEEEEEeCCCc-EEEEEe
Confidence            9999999999999 766764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.44  E-value=2.1e-10  Score=103.43  Aligned_cols=205  Identities=18%  Similarity=0.263  Sum_probs=146.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCc-eEEEEeeecCCceEEEEE-ecCCCEEEEEeCCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR-EIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ....+...+.++.|.+++..++.++. ..+.+|+..... ........+...+..+.. ..+....+...+.     .|+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~  134 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS-----LDG  134 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC-----CCc
Confidence            34567789999999999999998885 558899988775 333332201113444444 3334423333222     478


Q ss_pred             eEEEEeCCC-CcEEEEeecC-CceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          157 KVMIWDDHQ-SRCIGELSFR-SEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       157 ~v~iWD~~~-~~~~~~~~~~-~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      .+++||... ......+..+ ..|..+.|+++.  ++++.  ++.+++|++...+.+..+..|...+..+++++  ++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~  212 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP--DGGL  212 (466)
T ss_pred             cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC--Ccce
Confidence            999999998 5555555544 578889998765  33333  68999999998888888888878787888774  4444


Q ss_pred             EEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          231 LVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ++.+++.|+.|.+|+.......  .+.+|...+ ...|+|++.++++++.|+. +++|++.....
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~  275 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSS  275 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCc
Confidence            4444699999999987755443  488888886 4489999999999999999 99999987654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.6e-11  Score=113.76  Aligned_cols=198  Identities=13%  Similarity=0.049  Sum_probs=124.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .+...|.+.+|||||++||..+. +   .+.+|++.+++......+  .+......|+++++.++++..      .++.+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG~~La~~~~------~~g~~  272 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDGSRLAFASS------KDGVL  272 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCCCEEEEEEe------cCCcE
Confidence            34567999999999999997764 2   378999987654333333  333446788889988887653      23444


Q ss_pred             --EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          159 --MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       159 --~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                        .+||+.+++..........+....|+++  .++...+  +...||++.. ......+ .+..  ....  +++|+..+
T Consensus       273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~--~SpDG~~i  347 (429)
T PRK01742        273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQ--ISADGKTL  347 (429)
T ss_pred             EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCcc--CCCCCCEE
Confidence              4557766665433333445677888876  3444443  6777777632 2222222 3222  2233  45566777


Q ss_pred             EEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC--CCcEEEec
Q 022387          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEG  297 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~--tg~~l~~~  297 (298)
                      ++. +.++ +.+||..+.....+..+ .....++|+|||++|+.++.++. +++|++.  +|++++++
T Consensus       348 a~~-~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        348 VMI-NGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARL  411 (429)
T ss_pred             EEE-cCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEc
Confidence            763 3354 44478776654444322 23467889999999999999999 8888863  57666543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.43  E-value=1.9e-11  Score=105.52  Aligned_cols=198  Identities=13%  Similarity=0.142  Sum_probs=130.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCC------------ceEEEEeeecCCceEEEEEe-------cCCCEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF------------REIFRRDFERGGGIGVVEML-------FRCNILAL  144 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  144 (298)
                      .+-...+.|+|||..|.+-++ +++.+|++...            .............+...+|-       ++.++++.
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            345667999999999888887 66889987321            11112221112222222321       34556666


Q ss_pred             EeCCCCCCCCCCeEEEEeCCCCcEEEEee---cC---CceEEEEEeCC--eEEEEECCeEEEEEc-CCCeEEEEEe--cc
Q 022387          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELS---FR---SEVRSVKLRRD--RIIVVLEQKIFVYNF-ADLKLLHQIE--TI  213 (298)
Q Consensus       145 ~~~~~~~~~~d~~v~iWD~~~~~~~~~~~---~~---~~v~~v~~~~~--~l~v~~~~~I~iwd~-~~~~~i~~~~--~~  213 (298)
                      .+       .+.-|++||.-+|+....+.   +-   ....++.|+++  .+++.-...|+++|+ +.+.-...+.  .+
T Consensus       129 ss-------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  129 SS-------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             cc-------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence            55       78899999999987655443   22   24577899886  455555689999999 5443322222  12


Q ss_pred             -----CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          214 -----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       214 -----~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                           ...+.+++|+|.. ...+|+ |+....+-|+.... +++..+-+|.+.|+.++|.+||..|.+|+...-.|..||
T Consensus       202 ~k~gq~giisc~a~sP~~-~~~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMD-SKTLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             ccccccceeeeeeccCCC-Ccceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence                 1223344666543 247775 99988998966654 456688899999999999999999999976333499999


Q ss_pred             CCCC
Q 022387          288 TLDG  291 (298)
Q Consensus       288 ~~tg  291 (298)
                      ++.-
T Consensus       280 iR~~  283 (406)
T KOG2919|consen  280 IRYS  283 (406)
T ss_pred             ehhc
Confidence            9864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.42  E-value=2.1e-10  Score=103.72  Aligned_cols=200  Identities=10%  Similarity=0.057  Sum_probs=125.2

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceE--EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ....++|+|+|++|++++.  +.+.+|++++.+..  ....+.+......+.+.+++..++++..      .++.|.+||
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d  154 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFT  154 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEE
Confidence            4568999999999888764  55889998753321  1111111223344556777777766653      358899999


Q ss_pred             CCCCcEEE-------EeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCC--C--eEEEEEeccC----CCcceEEEE
Q 022387          163 DHQSRCIG-------ELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD--L--KLLHQIETIA----NPKGLCAVS  223 (298)
Q Consensus       163 ~~~~~~~~-------~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~--~--~~i~~~~~~~----~~~~~~~~s  223 (298)
                      +.+...+.       .+........+.|+++  .++++.  +++|.+|++..  +  +.+.++....    .+.....+.
T Consensus       155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            97643221       1222334567888876  565665  48999999963  2  3444443321    111222344


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccc---cceeEEEECCCCCEEEEEeC-CCCEEEEEECC--CCcE
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD---SRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGTL  293 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~---~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~--tg~~  293 (298)
                      .++++.++.++...++.|.+|++.... ...+.+|.   ...+.++|+|||++|+++.. +++ |.||++.  +|.+
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~-v~v~~~~~~~g~l  310 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHH-ISVYEIDGETGLL  310 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCc-EEEEEEcCCCCcE
Confidence            455667777656678899999885432 22333332   25678999999999998876 888 9999874  4543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.41  E-value=2.7e-10  Score=102.81  Aligned_cols=198  Identities=20%  Similarity=0.323  Sum_probs=144.3

Q ss_pred             CeEEEEE-cCCCC-EEEEEcC-Ce-EEEEEcCC-CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           87 TLLHISF-NQDHG-CFAAGTD-HG-FRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        87 ~V~~v~f-s~dg~-~lasgs~-~g-i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .+..+.+ ++++. +++..+. ++ +.+|+... ......... |...+..+.+.+....++..+ .     .++.+++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-~-----~~~~~~~~  183 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGS-S-----LDGTIKLW  183 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCCEEEecC-C-----CCCceEEE
Confidence            6777777 88888 5554343 54 77999987 444333333 566777777777777554443 1     27999999


Q ss_pred             eCCCCcEEEEeec-CCceEEEEEeCCe--EEEE--ECCeEEEEEcCCCeEEE-EEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          162 DDHQSRCIGELSF-RSEVRSVKLRRDR--IIVV--LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       162 D~~~~~~~~~~~~-~~~v~~v~~~~~~--l~v~--~~~~I~iwd~~~~~~i~-~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +...+..+..+.. ...|.++.++++.  +++.  .++.|++||...++.+. .+..|.... ...++++.  .+++ ++
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~  259 (466)
T COG2319         184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG--SLLA-SG  259 (466)
T ss_pred             EcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC--CEEE-Ee
Confidence            9998777777765 5689999998764  3333  35799999998777777 577666654 44555554  5565 58


Q ss_pred             CCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          236 LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       236 s~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +.|+.+++|+.....  ...+..|...|.++.|+|++..+++++.|+. +++||+.++.....
T Consensus       260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~  321 (466)
T COG2319         260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSS  321 (466)
T ss_pred             cCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEE
Confidence            999999999987544  3444688999999999999999999999987 99999998876543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=1e-11  Score=107.69  Aligned_cols=186  Identities=15%  Similarity=0.145  Sum_probs=129.2

Q ss_pred             CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (298)
Q Consensus        98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (298)
                      +.+|+|-. +.+++||..+++.+..... +...+..+.+..  .++.+..++       .||+||+||++.......+.+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~s-------sDG~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCS-------SDGTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEec-------cCCeEEEEEeecchhhhheec
Confidence            45777755 6699999999765544443 244444555543  455566655       689999999998765544443


Q ss_pred             C--C--ceEEEEEe-CCeEEEEE-C-----CeEEEEEcCCCeE-EEEE-eccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387          175 R--S--EVRSVKLR-RDRIIVVL-E-----QKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       175 ~--~--~v~~v~~~-~~~l~v~~-~-----~~I~iwd~~~~~~-i~~~-~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      .  +  +..+++.+ ...++.++ .     =.|.+||++..+. ++.+ ..|...+..+.|+|... .+|+ +||.||.|
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-nlLl-SGSvDGLv  190 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-NLLL-SGSVDGLV  190 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-CeEE-eecccceE
Confidence            2  2  55666665 34444443 2     2799999987655 5555 45777788888877542 4555 69999999


Q ss_pred             EEEEcCCcc----eEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE
Q 022387          242 RVEHYASKR----TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       242 ~i~~~~~~~----~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .++|.+...    +...-.|.+.|.++.|..++ +.|-+-+...+ ..+|+++.|.+.
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~  247 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEE  247 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChh
Confidence            999987643    33444577889999999776 56888889999 999999998753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=3.4e-11  Score=106.12  Aligned_cols=202  Identities=15%  Similarity=0.205  Sum_probs=136.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCc----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...+|..++.. ||.++++-+.+-+++|+.+..-    .+..+..  ...+..+.-......++..||.+    .-+.++
T Consensus       104 ~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke----~~n~lk  176 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKE----NINELK  176 (412)
T ss_pred             ccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchh----ccccee
Confidence            33456555533 5666665555568899887321    2222222  34455555444444444434332    226799


Q ss_pred             EEeCCCCcEEEEee--------cCCc--eEEEEEeC----CeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEE
Q 022387          160 IWDDHQSRCIGELS--------FRSE--VRSVKLRR----DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       160 iWD~~~~~~~~~~~--------~~~~--v~~v~~~~----~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s  223 (298)
                      |||++..+.+.+-+        ..-+  +..+.|-+    ..++.++. +.+++||.+. -+++.+|.-..+++.++..-
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence            99999876554422        1112  34456643    35555554 8999999964 45777777777777777776


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +++  .++. .|...|.+..+|...+.+.  .+++-++.|++|-.+|.+++||++|-|+. +||+|+++.++++.
T Consensus       257 p~g--n~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~k  327 (412)
T KOG3881|consen  257 PSG--NFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHK  327 (412)
T ss_pred             CCC--cEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhh
Confidence            654  5555 4899999999999887654  48899999999999999999999999999 99999999887654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.38  E-value=1.9e-11  Score=113.40  Aligned_cols=204  Identities=11%  Similarity=0.141  Sum_probs=132.6

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEE-eeecCCceEEEEEec-CCCEEEEEeCCCCCCCCC
Q 022387           79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRR-DFERGGGIGVVEMLF-RCNILALVGGGPDPQYPL  155 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d  155 (298)
                      .....|.+.|..+.|-|-...|++++. .++++||+...++.... .+.|.+.+..+++.. +...+++  ||     .|
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t--Gg-----RD  166 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT--GG-----RD  166 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee--cc-----CC
Confidence            344678889999999994456777765 56999999988765443 222667777777654 3444444  33     78


Q ss_pred             CeEEEEeCCCCcE--E-----------EE---------------e----ecCCceEEEEEeC-CeEEEEE--CCeEEEEE
Q 022387          156 NKVMIWDDHQSRC--I-----------GE---------------L----SFRSEVRSVKLRR-DRIIVVL--EQKIFVYN  200 (298)
Q Consensus       156 ~~v~iWD~~~~~~--~-----------~~---------------~----~~~~~v~~v~~~~-~~l~v~~--~~~I~iwd  200 (298)
                      +.|.|||.+-...  .           .+               .    .+.+.|+.+.|.. ..++.++  |+.|+|||
T Consensus       167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD  246 (720)
T KOG0321|consen  167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD  246 (720)
T ss_pred             CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence            9999999753210  0           00               0    0112355556654 3444443  58999999


Q ss_pred             cCCCeEEEEEe------ccC---CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc---eEeeccccc---ceeEEE
Q 022387          201 FADLKLLHQIE------TIA---NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDS---RIACFA  265 (298)
Q Consensus       201 ~~~~~~i~~~~------~~~---~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~---~~~~~~H~~---~V~~l~  265 (298)
                      |+.........      .+.   ...+.+.+..|..|.+|.+++. |+.|..|++....   ...+.+|-.   .|.+ .
T Consensus       247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~  324 (720)
T KOG0321|consen  247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-E  324 (720)
T ss_pred             ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeee-e
Confidence            98654433221      111   1355677777777788877666 9999999987543   234444432   2333 4


Q ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          266 LTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       266 fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .+||+.+|++|+.|.. +.||.+.+-+
T Consensus       325 lSpd~~~l~SgSsd~~-ayiw~vs~~e  350 (720)
T KOG0321|consen  325 LSPDDCSLLSGSSDEQ-AYIWVVSSPE  350 (720)
T ss_pred             cCCCCceEeccCCCcc-eeeeeecCcc
Confidence            6899999999999999 9999988654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.38  E-value=5e-11  Score=111.62  Aligned_cols=206  Identities=13%  Similarity=0.167  Sum_probs=137.1

Q ss_pred             CCcccCCCCCCeEEEEEcCCCC---EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           77 AESTSSSPPPTLLHISFNQDHG---CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        77 ~~~~~~~~~~~V~~v~fs~dg~---~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .+....+|.++|+|+.|=|+.+   +|++|+.|+ +++|.+..........+. .+.+.++++.-.........      
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~cv~a~~~~~~~~~------  118 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECVCVVARSSVMTCKA------  118 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEEEEEeeeeEEEeec------
Confidence            3445578999999999999888   888988766 779998844443344442 23444444432222222212      


Q ss_pred             CCCCeEEEEeCCCCc--EEEEeecCC-ce--EEEEE--eCCeEEEEECC---eEEEEEcC--CCeEEEEEeccCCCcceE
Q 022387          153 YPLNKVMIWDDHQSR--CIGELSFRS-EV--RSVKL--RRDRIIVVLEQ---KIFVYNFA--DLKLLHQIETIANPKGLC  220 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~--~~~~~~~~~-~v--~~v~~--~~~~l~v~~~~---~I~iwd~~--~~~~i~~~~~~~~~~~~~  220 (298)
                       .|+++.+||.+..+  +...+.+.- .+  +|+++  +++.++.+..+   .|.+|.-.  ..+.+..+.+|...+..+
T Consensus       119 -ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl  197 (764)
T KOG1063|consen  119 -ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL  197 (764)
T ss_pred             -cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence             57999999996555  333333321 22  22222  34455555444   44444332  346778889999999999


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCCcc-------------------------e-------EeecccccceeEEEECC
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------------------T-------KFIMAHDSRIACFALTQ  268 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-------------------------~-------~~~~~H~~~V~~l~fsp  268 (298)
                      +|+.-+.+.++++||+.|..|+||.+....                         +       ..+.+|..-|.++.|+|
T Consensus       198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p  277 (764)
T KOG1063|consen  198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP  277 (764)
T ss_pred             hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence            988766545555589999999999753110                         0       12359999999999999


Q ss_pred             CCCEEEEEeCCCCEEEEEECCCC
Q 022387          269 DGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ++..|.++|.|.+ +-||.-.+.
T Consensus       278 ~~~~LLSASaDks-miiW~pd~~  299 (764)
T KOG1063|consen  278 EGLDLLSASADKS-MIIWKPDEN  299 (764)
T ss_pred             chhhheecccCcc-eEEEecCCc
Confidence            9999999999999 889987654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=2.4e-10  Score=100.20  Aligned_cols=187  Identities=17%  Similarity=0.191  Sum_probs=132.1

Q ss_pred             CeEEEEEcCCCCEEEEEc-CCe--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           87 TLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs-~~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      .|.-.-||.  .++|..+ +++  +++.+......+....+  ...+..+.+  +-..++++=        ...|.|+|+
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--pt~IL~Vrm--Nr~RLvV~L--------ee~IyIydI  113 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFF--PTSILAVRM--NRKRLVVCL--------EESIYIYDI  113 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEec--CCceEEEEE--ccceEEEEE--------cccEEEEec
Confidence            344444553  4555444 344  77888877666655555  344444443  434444433        134999999


Q ss_pred             CCCcEEEEeecC----CceEEEEEeCC--eEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          164 HQSRCIGELSFR----SEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       164 ~~~~~~~~~~~~----~~v~~v~~~~~--~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      ++.+.+.++...    ..+.++.++..  .++.-.   .|.|.+||+.+.+.+.++..|..++.+++|++++  .+||+ 
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G--~llAT-  190 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG--TLLAT-  190 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC--CEEEE-
Confidence            999988887654    23566666665  344322   3899999999999999999999998888888765  89995 


Q ss_pred             cCCCce-EEEEEcCCcc-eEeecccc--cceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          235 GLQKGQ-VRVEHYASKR-TKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       235 Gs~dg~-v~i~~~~~~~-~~~~~~H~--~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +|+.|+ |+|+....++ +..|+.-.  ..|.+|+|+||+++|+..|.-++ |+||.+..-
T Consensus       191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~  250 (391)
T KOG2110|consen  191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKV  250 (391)
T ss_pred             eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEeccc
Confidence            888885 5668887654 45665432  35899999999999999999999 999998754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.36  E-value=2.5e-11  Score=113.59  Aligned_cols=201  Identities=14%  Similarity=0.100  Sum_probs=139.2

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcC------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           79 STSSSPPPTLLHISFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasgs~------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .+.++|.-.|++++.||+|++||++..      ..|++|+...-.....+.+ |.-.+..+.+++++.+++.++      
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLsvs------  591 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLSVS------  591 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEEee------
Confidence            344789999999999999999999864      2377998877555545554 445566777788889999988      


Q ss_pred             CCCCeEEEEeCCCCcE-EEE---ee-cCCceEEEEEeCCe--EEEEE-CCeEEEEEcCCC--eEEEEEec--cCCCcceE
Q 022387          153 YPLNKVMIWDDHQSRC-IGE---LS-FRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADL--KLLHQIET--IANPKGLC  220 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~-~~~---~~-~~~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~--~~i~~~~~--~~~~~~~~  220 (298)
                       .|+++.+|....... ...   .+ |...|.++.|+++.  ++.+. |++|++|...+.  +.+..+..  +...+..+
T Consensus       592 -RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv  670 (764)
T KOG1063|consen  592 -RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV  670 (764)
T ss_pred             -cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence             899999999854321 111   22 23367888898864  44444 589999999776  55555432  33344444


Q ss_pred             EEEeCC---CCeEEEEecCCCceEEEEEcC------Ccc-------eEeecccccceeEEEECCC----------CCEEE
Q 022387          221 AVSQGV---GSLVLVCPGLQKGQVRVEHYA------SKR-------TKFIMAHDSRIACFALTQD----------GQLLA  274 (298)
Q Consensus       221 ~~s~~~---d~~~la~sGs~dg~v~i~~~~------~~~-------~~~~~~H~~~V~~l~fspd----------g~~lA  274 (298)
                      ++.+--   ....++ .|-..|.|.+|...      +.-       .....+|.+.|+.++|+|.          ...||
T Consensus       671 ~~~~~~~~e~~~~va-vGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la  749 (764)
T KOG1063|consen  671 AYLPVDHNEKGDVVA-VGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA  749 (764)
T ss_pred             EeeccccccccceEE-EEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEe
Confidence            444321   122455 49999999998865      110       1133568889999999965          34679


Q ss_pred             EEeCCCCEEEEEECC
Q 022387          275 TSSTKGTLVRIFNTL  289 (298)
Q Consensus       275 t~S~Dgt~IrIWd~~  289 (298)
                      .|++|-+ +||+++.
T Consensus       750 ~~g~D~~-vri~nv~  763 (764)
T KOG1063|consen  750 VGGDDES-VRIFNVD  763 (764)
T ss_pred             eecccce-eEEeecc
Confidence            9999999 9999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=6.7e-11  Score=104.44  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=74.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      +.|.+-|.++.|+.+|++||+|+++- ++||+++..      +.+-.....|...+.++++.. .+..+..++      .
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~------~  125 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGE------R  125 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCC------C
Confidence            57788999999999999999999855 789998632      222222221334455555443 333444333      5


Q ss_pred             CCeEEEEeCCCCcEEEEeecCC---ceEEEEEeC--CeEEEEE-CCeEEEEEcC
Q 022387          155 LNKVMIWDDHQSRCIGELSFRS---EVRSVKLRR--DRIIVVL-EQKIFVYNFA  202 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~---~v~~v~~~~--~~l~v~~-~~~I~iwd~~  202 (298)
                      +++|.+-|+++.+.+.-+.+..   .|+.+..++  +.+++.+ ++.|.+||++
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            6899999999988776665543   677766665  2333333 3666677664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=3.2e-11  Score=100.49  Aligned_cols=139  Identities=10%  Similarity=0.142  Sum_probs=98.3

Q ss_pred             CCCeEEEEeCCC---------C-cEE-EEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeE------EEEEeccCC-
Q 022387          154 PLNKVMIWDDHQ---------S-RCI-GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL------LHQIETIAN-  215 (298)
Q Consensus       154 ~d~~v~iWD~~~---------~-~~~-~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~------i~~~~~~~~-  215 (298)
                      .+|+|.+..+.+         + ..+ .+..+..+++.+.|+.++++++.+|.|+-|..+....      +.+.+.... 
T Consensus        30 ~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~  109 (325)
T KOG0649|consen   30 LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV  109 (325)
T ss_pred             CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence            568888887542         1 122 2334567999999999999999999999998754322      111111111 


Q ss_pred             ------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          216 ------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       216 ------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                            .+..+.+.|..+ .++. +| .|+.+.-||++.++++ ++++|+..|.+++--.....+.||++||+ +||||.
T Consensus       110 ~~~evPeINam~ldP~en-Si~~-Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~  185 (325)
T KOG0649|consen  110 DAVEVPEINAMWLDPSEN-SILF-AG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDT  185 (325)
T ss_pred             CcccCCccceeEeccCCC-cEEE-ec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEec
Confidence                  123344444333 3333 24 7899999999998876 89999999999998555556889999999 999999


Q ss_pred             CCCcEEEe
Q 022387          289 LDGTLLQE  296 (298)
Q Consensus       289 ~tg~~l~~  296 (298)
                      +++|+++.
T Consensus       186 kt~k~v~~  193 (325)
T KOG0649|consen  186 KTQKHVSM  193 (325)
T ss_pred             cccceeEE
Confidence            99998764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=9.4e-11  Score=112.34  Aligned_cols=190  Identities=15%  Similarity=0.172  Sum_probs=129.3

Q ss_pred             EEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCC---CEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        91 v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      -.||+|++++..-..+.|+||...++.++...+. |...+..+.+.+..   .++.+++       .+|+|++||...+.
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~-~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLED-HTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGE   93 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhhhhccc-ccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcE
Confidence            3599999999999999999999999887665554 45555555554443   3444555       68999999999988


Q ss_pred             EEEEeecCCceEEEEEe------------------------C-------------------------------------C
Q 022387          168 CIGELSFRSEVRSVKLR------------------------R-------------------------------------D  186 (298)
Q Consensus       168 ~~~~~~~~~~v~~v~~~------------------------~-------------------------------------~  186 (298)
                      .+.++..+-++..+.+.                        .                                     .
T Consensus        94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge  173 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE  173 (792)
T ss_pred             EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence            87766543333222110                        0                                     0


Q ss_pred             eEEEEECCeEEEEEcCCCeE-EEEEe---ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-----cceEeeccc
Q 022387          187 RIIVVLEQKIFVYNFADLKL-LHQIE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAH  257 (298)
Q Consensus       187 ~l~v~~~~~I~iwd~~~~~~-i~~~~---~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-----~~~~~~~~H  257 (298)
                      +..++....+.+|+...... .....   .|.....+.+++  +.+.++| +|..||.|.+|.--.     .....+.-|
T Consensus       174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s--pn~~~~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS--PNERYLA-AGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEec--cccceEE-EeccCCcEEEEeccccccccccceEEEec
Confidence            22233345677777755331 00011   122233344554  4558888 599999999976322     234578889


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ...|++++||+||.+|.|||..|. +-+|.+.+++
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~  284 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK  284 (792)
T ss_pred             ccccceeEEecCCceEeecccceE-EEEEeecCCC
Confidence            999999999999999999999998 8899999987

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.33  E-value=3.5e-10  Score=94.61  Aligned_cols=133  Identities=18%  Similarity=0.267  Sum_probs=90.2

Q ss_pred             eEEEEeCCC-CcEEEEe--ecCCceEEEEEeCC--eEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          157 KVMIWDDHQ-SRCIGEL--SFRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       157 ~v~iWD~~~-~~~~~~~--~~~~~v~~v~~~~~--~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      ...||-++. +..+..+  ...++|.+++|+|+  .++++.   ...|.+||++ .+.+.++..  .+...+.  ++|+|
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~n~i~--wsP~G  112 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPRNTIS--WSPDG  112 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCceEEE--ECCCC
Confidence            355555532 2233333  34457999999874  555553   2589999996 666666653  3344444  55556


Q ss_pred             eEEEEec--CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEec
Q 022387          229 LVLVCPG--LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       229 ~~la~sG--s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~------Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+++++|  ...|.|.+||...........| ..++.++|||||++|||+..      |.. ++||++ .|+++.+.
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKK  186 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEec
Confidence            8888755  3468899999986554433334 34789999999999999964      788 999998 48787664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=8.4e-10  Score=95.21  Aligned_cols=169  Identities=19%  Similarity=0.237  Sum_probs=119.2

Q ss_pred             eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC-CCcEEEEeecCC---ceEEEE
Q 022387          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSFRS---EVRSVK  182 (298)
Q Consensus       107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~-~~~~~~~~~~~~---~v~~v~  182 (298)
                      .+.|||=...+++.+..+  ..++..+.+.  .+.++++-        .++|.||... +-+.++.+....   ...+++
T Consensus        76 kviIWDD~k~~~i~el~f--~~~I~~V~l~--r~riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELSF--NSEIKAVKLR--RDRIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             eEEEEecccCcEEEEEEe--ccceeeEEEc--CCeEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            477999555566667776  6777776664  45555554        5889999987 445555554322   233343


Q ss_pred             EeCCe-EEEEE---CCeEEEEEcCCCeE--EEEEeccCCCcceEEEEeCCCCeEEEEecCCCce-EEEEEcCCcc-eEee
Q 022387          183 LRRDR-IIVVL---EQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ-VRVEHYASKR-TKFI  254 (298)
Q Consensus       183 ~~~~~-l~v~~---~~~I~iwd~~~~~~--i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~-v~i~~~~~~~-~~~~  254 (298)
                      -+... +++.-   -|.|.|-|+...+.  ...+.+|...+.+++++.++  .++| ++|..|+ |+|||..++. +..+
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G--t~vA-TaStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG--TLVA-TASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc--cEEE-EeccCcEEEEEEEcCCCcEeeee
Confidence            33333 33322   28999999965544  46788999999999998865  8888 5888885 5779988765 4455


Q ss_pred             c-c-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          255 M-A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       255 ~-~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      + + ....|.||+||||+.+||.+|+.|| ++||.++.-
T Consensus       221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~  258 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDT  258 (346)
T ss_pred             ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecC
Confidence            4 3 3356999999999999999999999 999998863

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.32  E-value=6.4e-11  Score=110.08  Aligned_cols=135  Identities=14%  Similarity=0.180  Sum_probs=104.9

Q ss_pred             CCeEEEEeCCCCc-----EEEEeecCCceEEEEEeC---CeEEEEEC-CeEEEEEcCC-------CeEEEEEeccCCCcc
Q 022387          155 LNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR---DRIIVVLE-QKIFVYNFAD-------LKLLHQIETIANPKG  218 (298)
Q Consensus       155 d~~v~iWD~~~~~-----~~~~~~~~~~v~~v~~~~---~~l~v~~~-~~I~iwd~~~-------~~~i~~~~~~~~~~~  218 (298)
                      -|.|.|++++...     .+-.+.....|+.+.|++   .+++++++ +.|++|.+..       +++-..+..|...+.
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            3789999998732     233344455788888875   58888875 8999999953       344556677777666


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .+.|++-.- .+|| +.++|-+|++||+.+.... .|.+|+..|..+||||||+++||.+.||+ |||++-+++.
T Consensus       682 slRfHPLAa-dvLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e  753 (1012)
T KOG1445|consen  682 SLRFHPLAA-DVLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE  753 (1012)
T ss_pred             EEEecchhh-hHhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC
Confidence            666665332 3455 4799999999999887655 79999999999999999999999999999 9999988764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.32  E-value=2.6e-10  Score=112.79  Aligned_cols=206  Identities=11%  Similarity=0.101  Sum_probs=139.8

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCc-------eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           82 SSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      +.|...|..++.+++ +.+|++|++|| |++|++....       ...+... .+..+..+.+++.++.+|+++      
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t------ 1117 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST------ 1117 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc------
Confidence            566778888888765 59999999977 7899985422       1122221 366788889999999999986      


Q ss_pred             CCCCeEEEEeCCC--C-----cEEEEe--ecCCceEEEE-Ee---CC-eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCc
Q 022387          153 YPLNKVMIWDDHQ--S-----RCIGEL--SFRSEVRSVK-LR---RD-RIIVVLE-QKIFVYNFADLKLLHQIETIANPK  217 (298)
Q Consensus       153 ~~d~~v~iWD~~~--~-----~~~~~~--~~~~~v~~v~-~~---~~-~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~  217 (298)
                       .||.|++.++.-  .     .+.+..  ...+.+..+. +.   .. .++.+++ +.|..||++...-..+++......
T Consensus      1118 -~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 -KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             -CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence             789999998765  1     112222  2223333321 21   12 4445555 799999998877777776554445


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-ee-cccccceeEEEECCCC---CEEEEEeC--CCCEEEEEECCC
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDG---QLLATSST--KGTLVRIFNTLD  290 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~-~~H~~~V~~l~fspdg---~~lAt~S~--Dgt~IrIWd~~t  290 (298)
                      .+.++.-++.++++++ |+..|.+.+||+..+... .. ..|..+|+.|+.+|-.   ...++++.  .+. |-+|++.+
T Consensus      1197 ~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~~~ 1274 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNMET 1274 (1431)
T ss_pred             ceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeeccc
Confidence            5666777777788885 999999999999987644 22 2344778888877543   45555544  566 99999999


Q ss_pred             CcEEEec
Q 022387          291 GTLLQEG  297 (298)
Q Consensus       291 g~~l~~~  297 (298)
                      |.+-..+
T Consensus      1275 g~~~~vl 1281 (1431)
T KOG1240|consen 1275 GLRQTVL 1281 (1431)
T ss_pred             CcceEEE
Confidence            9775543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.32  E-value=9.7e-11  Score=103.70  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC--------C------CceEEEEeee-cCCceEEEEEecCCCEEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFE-RGGGIGVVEMLFRCNILALV  145 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~--------~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  145 (298)
                      ..|...|++|.|+|+|++||+|+++| +.+|-..        +      ..++..+.++ |..++.-++|..+++.++++
T Consensus        62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence            35667999999999999999999977 5589544        2      1133333332 55677777888888877777


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEe
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLR  184 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~  184 (298)
                      +       .|+.+++||+..|+.+..+.-+. -|..++|.
T Consensus       142 s-------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawD  174 (434)
T KOG1009|consen  142 S-------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWD  174 (434)
T ss_pred             e-------ccceEEEEEeccceeEeeccccccccceeecc
Confidence            6       68999999999999887765443 34445544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.32  E-value=2.5e-11  Score=107.13  Aligned_cols=130  Identities=16%  Similarity=0.248  Sum_probs=97.0

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCe
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLK  205 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~  205 (298)
                      |.+.+.-+.|++..+. .+++|+     .|.+|+||++-.+.....+.                               +
T Consensus        80 Ht~~vLDi~w~PfnD~-vIASgS-----eD~~v~vW~IPe~~l~~~lt-------------------------------e  122 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDC-VIASGS-----EDTKVMVWQIPENGLTRDLT-------------------------------E  122 (472)
T ss_pred             ccccccccccCccCCc-eeecCC-----CCceEEEEECCCcccccCcc-------------------------------c
Confidence            4566666667654332 344444     46888888875544332221                               4


Q ss_pred             EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (298)
Q Consensus       206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~Ir  284 (298)
                      ++..+.+|...++.++.++...+.++  +.+.|..|.+|+..++... ++. |..-|.++.|+.||.+|+|.+.|+. ||
T Consensus       123 pvv~L~gH~rrVg~V~wHPtA~NVLl--sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vR  198 (472)
T KOG0303|consen  123 PVVELYGHQRRVGLVQWHPTAPNVLL--SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VR  198 (472)
T ss_pred             ceEEEeecceeEEEEeecccchhhHh--hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eE
Confidence            45667777777888888887655444  4688899999999987644 566 9999999999999999999999999 99


Q ss_pred             EEECCCCcEEEe
Q 022387          285 IFNTLDGTLLQE  296 (298)
Q Consensus       285 IWd~~tg~~l~~  296 (298)
                      |||.++|+++.|
T Consensus       199 v~dpr~~~~v~e  210 (472)
T KOG0303|consen  199 VIDPRRGTVVSE  210 (472)
T ss_pred             EEcCCCCcEeee
Confidence            999999999876

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.32  E-value=1.2e-10  Score=110.63  Aligned_cols=201  Identities=14%  Similarity=0.058  Sum_probs=131.3

Q ss_pred             ccCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCce--EEEEee---ecCCceEEEEEecCC--CEEEEEeCCCC
Q 022387           80 TSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE--IFRRDF---ERGGGIGVVEMLFRC--NILALVGGGPD  150 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~  150 (298)
                      .....+..|+|+.|+|. ..+||.|..+| |.+||+...+.  ......   .|...+..+.|..+.  ..++.++    
T Consensus       237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s----  312 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS----  312 (555)
T ss_pred             EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe----
Confidence            33455679999999995 56777777766 88999976554  222111   145556666665432  2355555    


Q ss_pred             CCCCCCeEEEEeCCCCcE---EEEe----------ecCCceEEEEEe---CCeEEEEEC-CeEEEEEcCCC--------e
Q 022387          151 PQYPLNKVMIWDDHQSRC---IGEL----------SFRSEVRSVKLR---RDRIIVVLE-QKIFVYNFADL--------K  205 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~---~~~~----------~~~~~v~~v~~~---~~~l~v~~~-~~I~iwd~~~~--------~  205 (298)
                         .||.|..|+++.-..   ....          .-...++++.|.   +..++++++ |.|.-=+-...        +
T Consensus       313 ---sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~  389 (555)
T KOG1587|consen  313 ---SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK  389 (555)
T ss_pred             ---cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence               689999998765321   1110          111246777775   568888886 66665333221        1


Q ss_pred             EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceEeecccccceeEEEECCCC-CEEEEEeCCCCE
Q 022387          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTL  282 (298)
Q Consensus       206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~  282 (298)
                      ....+..|..++.++.+++-....+++  +. |..|+||...  ..++..+..+...|++++|||-- ..||++..||. 
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls--~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-  465 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLS--VG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-  465 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeee--ec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-
Confidence            223445566666677666655434444  33 9999999876  34566788888889999999974 79999999999 


Q ss_pred             EEEEECCCC
Q 022387          283 VRIFNTLDG  291 (298)
Q Consensus       283 IrIWd~~tg  291 (298)
                      |.|||+...
T Consensus       466 l~iWDLl~~  474 (555)
T KOG1587|consen  466 LDIWDLLQD  474 (555)
T ss_pred             eehhhhhcc
Confidence            999998753

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.32  E-value=1.4e-10  Score=100.26  Aligned_cols=94  Identities=9%  Similarity=0.097  Sum_probs=79.8

Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-e---ecccccceeEEEECCC
Q 022387          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-F---IMAHDSRIACFALTQD  269 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~---~~~H~~~V~~l~fspd  269 (298)
                      |.|+|.|+.++++...+.+|...+..+.+.++.. ++++ ++|.|-.|++|++++.... .   +.+|...|-++.|+++
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvl-s~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVL-SASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             eEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEE-EecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            7899999988888888888888777777776542 3444 6999999999999987643 3   4689999999999999


Q ss_pred             CCEEEEEeCCCCEEEEEECCC
Q 022387          270 GQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      |.+||++|+|.+ |++|++..
T Consensus       193 gd~i~ScGmDhs-lk~W~l~~  212 (385)
T KOG1034|consen  193 GDRIASCGMDHS-LKLWRLNV  212 (385)
T ss_pred             CCeeeccCCcce-EEEEecCh
Confidence            999999999999 99999984

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.31  E-value=3.4e-12  Score=121.44  Aligned_cols=205  Identities=11%  Similarity=0.127  Sum_probs=138.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ++|.+.|+|+.|...|.++++|+++- ++||.+++..++..... |.+.+.-+++..+.-.++.++       .|+-|++
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS-------~D~vIrv  258 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS-------NDKVIRV  258 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc-------cCceEEE
Confidence            78889999999999999999999966 67999999887666553 566666666655444444444       6889999


Q ss_pred             EeCCCCcEEEEeec-CCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEE---------------EEe---------ccC-
Q 022387          161 WDDHQSRCIGELSF-RSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLH---------------QIE---------TIA-  214 (298)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~---------------~~~---------~~~-  214 (298)
                      |-+..+..+.-+.. .+.|++++|+|.. ....+|++++||.+ ..++.               .+.         +.. 
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCccc-cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999987766554 4689999999877 33345899999987 11111               110         000 


Q ss_pred             ---CC-----------cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCC-CCEEEEEeC
Q 022387          215 ---NP-----------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSST  278 (298)
Q Consensus       215 ---~~-----------~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspd-g~~lAt~S~  278 (298)
                         ..           +..+.....++..-+.++.-.+-.+++|+.-... ...+.+|...+..|.++|= .+...+++.
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~  416 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY  416 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence               00           0000011111111111112233445557766554 4578899999999999984 566678899


Q ss_pred             CCCEEEEEECCCCcEEEec
Q 022387          279 KGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       279 Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ||. +-|||+..|..++.|
T Consensus       417 dgs-t~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  417 DGS-TIIWDIWEGIPIKHY  434 (1113)
T ss_pred             CCc-eEeeecccCCcceee
Confidence            999 889999999888766

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.31  E-value=2.3e-09  Score=97.00  Aligned_cols=194  Identities=14%  Similarity=0.087  Sum_probs=120.9

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CeEEEEEcCC-CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ....++++|||++|++++.  +++.+|+++. +...........+....+.+.++++.++++..      .++.|.+||+
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~~  109 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSPL  109 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEEE
Confidence            4567899999999887754  5688899873 33222222212345567777888887777763      3588999999


Q ss_pred             CCC----cEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEE-------EEeccCCCcceEEEEeCCCC
Q 022387          164 HQS----RCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       164 ~~~----~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~-------~~~~~~~~~~~~~~s~~~d~  228 (298)
                      .+.    +.+..+........+.++++  .++++.  ++.|.+||+.+...+.       .+.....+ ..++|+  +++
T Consensus       110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-~~~~~~--pdg  186 (330)
T PRK11028        110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-RHMVFH--PNQ  186 (330)
T ss_pred             CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC-ceEEEC--CCC
Confidence            743    22333333345666778765  455544  4899999997633221       11122222 234554  555


Q ss_pred             eEEEEecCCCceEEEEEcCC--cce---Eeeccc------ccceeEEEECCCCCEEEEEeC-CCCEEEEEECCC
Q 022387          229 LVLVCPGLQKGQVRVEHYAS--KRT---KFIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLD  290 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~--~~~---~~~~~H------~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~t  290 (298)
                      .++.++...++.|.+|+++.  +.+   ..+..+      ......|.|+|||++|+++.. +++ |.+|++..
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~  259 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSE  259 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeC
Confidence            77765456689999999863  222   122221      123446999999999998855 566 99999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=5e-10  Score=96.52  Aligned_cols=204  Identities=12%  Similarity=0.107  Sum_probs=137.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|-.+|++++||+||++|.+++.|- +++||+..+..+.+..|  ...+..+.+.+.....+++.-      .+..-.+
T Consensus        62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~spv~~~q~hp~k~n~~va~~------~~~sp~v  133 (405)
T KOG1273|consen   62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--DSPVWGAQWHPRKRNKCVATI------MEESPVV  133 (405)
T ss_pred             hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc--cCccceeeeccccCCeEEEEE------ecCCcEE
Confidence            56777999999999999999999854 78999998888888887  678888888776555555441      1222333


Q ss_pred             EeCCCC--cEEEEe---ecCCceEEEEEe--CCeEEEEEC-CeEEEEEcCCCeEEEEEeccC-CCcceEEEEeCCCCeEE
Q 022387          161 WDDHQS--RCIGEL---SFRSEVRSVKLR--RDRIIVVLE-QKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       161 WD~~~~--~~~~~~---~~~~~v~~v~~~--~~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~-~~~~~~~~s~~~d~~~l  231 (298)
                      -++...  .++..=   ..+....+..|+  ++.+.+++. |.+.+||..+.+++..++... ..+..+.++..+  ..|
T Consensus       134 i~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g--~~l  211 (405)
T KOG1273|consen  134 IDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG--RFL  211 (405)
T ss_pred             EEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC--cEE
Confidence            344321  111110   011111222344  456666664 899999999999999887654 445556666655  666


Q ss_pred             EEecCCCceEEEEEcCCc----c--eE----eec--ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          232 VCPGLQKGQVRVEHYASK----R--TK----FIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~----~--~~----~~~--~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ++ -..|..|+.|+.+.-    +  ..    .+.  -.+..=.+++||.||.|++.++.--..+.||....|.+++-
T Consensus       212 ii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI  287 (405)
T KOG1273|consen  212 II-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI  287 (405)
T ss_pred             EE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence            65 788999999987521    0  00    111  11234578999999999998887666699999999988763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=1.8e-10  Score=112.36  Aligned_cols=195  Identities=16%  Similarity=0.211  Sum_probs=130.7

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee--cCCceEEEEEecC--CCEEEEEeCCCCCCCCCCeEEEE
Q 022387           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      +-..+.|+|=...|+++.+ ..|+|||.+..+.+......  ....+..+++...  ..++.+++       .||.||||
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas-------~dGvIRIw 1138 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS-------SDGVIRIW 1138 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec-------cCceEEEe
Confidence            3456788988888998886 77899999887764333210  1234455555432  33444544       68999999


Q ss_pred             eCC-----CCcEEEEeec----------CCceEEEEEeCCeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeC
Q 022387          162 DDH-----QSRCIGELSF----------RSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       162 D~~-----~~~~~~~~~~----------~~~v~~v~~~~~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~  225 (298)
                      +-.     +.+.+..+..          .+-+..+......+++.++ ..|+|||....+.++.+....+ ..+.+++.+
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSAD 1217 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccc
Confidence            742     2233332221          0122222223456666664 7999999998888887765422 334466655


Q ss_pred             CCC-eEEEEecCCCceEEEEEcCCcc----eEeecccccc--eeEEEECCCCC-EEEEEeCCCCEEEEEECCCC
Q 022387          226 VGS-LVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSR--IACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       226 ~d~-~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~~--V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ..+ .++| +|-.||.|++||.....    +...+.|+..  |..+.+.+.|- .|++||.||. |++||++..
T Consensus      1218 ~~~gn~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1218 LVHGNIIA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMS 1289 (1387)
T ss_pred             ccCCceEE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccC
Confidence            443 6666 49999999999987643    4477889887  99999999874 4999999999 999999973

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=6.7e-11  Score=102.73  Aligned_cols=135  Identities=13%  Similarity=0.245  Sum_probs=98.0

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCC-ceEEEEEe----CCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-cceEEEEeCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRS-EVRSVKLR----RDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-KGLCAVSQGV  226 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~----~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-~~~~~~s~~~  226 (298)
                      +.++|+++|..+++.+.+++.+. .+..+.|.    +..+.+++ +|+|++||++....+..+.-..++ ...++|...-
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            45889999999999999998764 45555553    45666654 689999999877666555543333 2223333332


Q ss_pred             CCeEEEEecCC----CceEEEEEcCCcce--E-eecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387          227 GSLVLVCPGLQ----KGQVRVEHYASKRT--K-FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       227 d~~~la~sGs~----dg~v~i~~~~~~~~--~-~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ...++++ |..    +-.|.+||+...+.  . -...|...|++|+|+|. -.+|+|||.||- |.|||+..
T Consensus       128 k~~ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~  197 (376)
T KOG1188|consen  128 KKNIIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKK  197 (376)
T ss_pred             cCCeEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCC
Confidence            4477775 643    66888899887643  2 35689999999999986 689999999998 99999874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=3.1e-10  Score=110.76  Aligned_cols=198  Identities=16%  Similarity=0.264  Sum_probs=130.9

Q ss_pred             CCCCCCeEEEEEc--CCCCEEEEEcCCe-EEEEEc-CC----CceEEEEe-ee-----cCCceEEEEEecCCCEEEEEeC
Q 022387           82 SSPPPTLLHISFN--QDHGCFAAGTDHG-FRIYNC-DP----FREIFRRD-FE-----RGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        82 ~~~~~~V~~v~fs--~dg~~lasgs~~g-i~vw~~-~~----~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      ......|+.+.+-  .|..++.+|+.|| ||||.- .+    .+.+..+. +.     ..+.-.+++|......+.+.| 
T Consensus      1106 ~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG- 1184 (1387)
T KOG1517|consen 1106 AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG- 1184 (1387)
T ss_pred             CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-
Confidence            3445688888864  3556888998877 779953 22    22221111 10     122225556665566665555 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEE---eCCeEEEE-ECCeEEEEEcCCC---eEEEEEeccCCCcc
Q 022387          148 GPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKL---RRDRIIVV-LEQKIFVYNFADL---KLLHQIETIANPKG  218 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~---~~~~l~v~-~~~~I~iwd~~~~---~~i~~~~~~~~~~~  218 (298)
                            .-+.|+|||..+.++...+.+.+  -|+++.-   +.+.++++ .||.|++||.+-.   ..+...+.|.....
T Consensus      1185 ------d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1185 ------DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             ------CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence                  23789999999998888877654  4555543   23445544 3799999998632   35667777877644


Q ss_pred             eEEE--EeCCCCeEEEEecCCCceEEEEEcCCcc-e--Eeecccc--c-ceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          219 LCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKR-T--KFIMAHD--S-RIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       219 ~~~~--s~~~d~~~la~sGs~dg~v~i~~~~~~~-~--~~~~~H~--~-~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ++.+  ...+.+. |+ +|+.||.|++||+.... .  .++..|-  + .+++|..+++...+||||. +. |+||++..
T Consensus      1259 Iv~~slq~~G~~e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~~G 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGE-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSLSG 1334 (1387)
T ss_pred             ceeEEeecCCCcc-ee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEecCh
Confidence            5544  4444443 44 69999999999998732 2  2445554  3 5999999999999999998 76 99999764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=5.1e-10  Score=107.38  Aligned_cols=199  Identities=17%  Similarity=0.189  Sum_probs=119.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      +.+=|-..|.+++|++||.+|.+|+.-+ +.+|.+++.+..+--.+  ++.+..+.++++++..+++.       .|+.|
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL--gs~I~~i~vS~ds~~~sl~~-------~DNqI  316 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL--GSPILHIVVSPDSDLYSLVL-------EDNQI  316 (792)
T ss_pred             EEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc--CCeeEEEEEcCCCCeEEEEe-------cCceE
Confidence            3355667999999999999999999866 56999999887776666  77888888888888877776       45555


Q ss_pred             EEEeC-----------------------------------------------------CCCcEEEEeec------CC---
Q 022387          159 MIWDD-----------------------------------------------------HQSRCIGELSF------RS---  176 (298)
Q Consensus       159 ~iWD~-----------------------------------------------------~~~~~~~~~~~------~~---  176 (298)
                      .+-..                                                     .+...+.++..      .+   
T Consensus       317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n  396 (792)
T KOG1963|consen  317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN  396 (792)
T ss_pred             EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence            55543                                                     33222222210      00   


Q ss_pred             ---ceEEEEEeCCeEEEEE-----------C--CeEEEEEcCCC----eEEEEEe-ccCCCcceEEEEeCCCCeEEEEec
Q 022387          177 ---EVRSVKLRRDRIIVVL-----------E--QKIFVYNFADL----KLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       177 ---~v~~v~~~~~~l~v~~-----------~--~~I~iwd~~~~----~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                         .+.++....+....++           +  -.+++|-....    .+..++. .|....-..++.........+ +.
T Consensus       397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v-ta  475 (792)
T KOG1963|consen  397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV-TA  475 (792)
T ss_pred             eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE-Ee
Confidence               0111111111111111           0  14555644221    1221221 233333333444333333444 47


Q ss_pred             CCCceEEEEEcCCcc-------e---E-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          236 LQKGQVRVEHYASKR-------T---K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       236 s~dg~v~i~~~~~~~-------~---~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +.||.++||.++...       .   + .-..|..++++++||.||.+||.+ .|++ |.|||..+
T Consensus       476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~-Itiwd~~~  539 (792)
T KOG1963|consen  476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDT-ITIWDYDT  539 (792)
T ss_pred             ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCE-EEEecCCC
Confidence            899999999984211       1   1 122478999999999999766655 6887 99999988

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=6.7e-10  Score=92.73  Aligned_cols=194  Identities=12%  Similarity=0.143  Sum_probs=125.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCC---------CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDP---------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      .|..-+++|.+++|+.|...| |.|+.+..         ++.....+-.|++++..+.+  ..+.+..++        ||
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f--~d~~Lls~g--------dG   81 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF--HDDFLLSGG--------DG   81 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee--ehhheeecc--------Cc
Confidence            455668899999999999866 77876532         22222222225666665554  344444443        58


Q ss_pred             eEEEEeCCCCcE------EEEeec--------CCceEEEEEeC--C-eEEEEECCeEEEEEcCCCeEEEEEeccCCCcce
Q 022387          157 KVMIWDDHQSRC------IGELSF--------RSEVRSVKLRR--D-RIIVVLEQKIFVYNFADLKLLHQIETIANPKGL  219 (298)
Q Consensus       157 ~v~iWD~~~~~~------~~~~~~--------~~~v~~v~~~~--~-~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~  219 (298)
                      .|+-|.++....      +.++..        -..|.++...|  + .+++++|+.++.||+++++..+++++|...+.+
T Consensus        82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~  161 (325)
T KOG0649|consen   82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS  161 (325)
T ss_pred             eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence            899998754221      111111        12566666654  3 455556789999999999999999999988877


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-e---------ecccccc-eeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-F---------IMAHDSR-IACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~---------~~~H~~~-V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      +... ...+++|  +|+.||++++||.++.+.. .         ++.|.+. |-+++-  +..+|++|+-.  .+.||++
T Consensus       162 vv~R-~~~~qil--sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp--~lslwhL  234 (325)
T KOG0649|consen  162 VVGR-NANGQIL--SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP--KLSLWHL  234 (325)
T ss_pred             eeec-ccCccee--ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC--ceeEEec
Confidence            7652 2233666  5999999999999875422 2         2333332 556655  55699998744  3789999


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      ++.++...|
T Consensus       235 rsse~t~vf  243 (325)
T KOG0649|consen  235 RSSESTCVF  243 (325)
T ss_pred             cCCCceEEE
Confidence            988776544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1e-10  Score=107.12  Aligned_cols=206  Identities=14%  Similarity=0.147  Sum_probs=131.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCC-CEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .+|.+-|+|+.|+.||.+||+|++|. +.|||.-..+.+....-.|...|.++.+.+.. +.+++.+.      .|+.|+
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i~  120 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLIK  120 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceEE
Confidence            57888999999999999999999988 77999887776666554466778888887654 44444443      469999


Q ss_pred             EEeCCCCc----------EEEEeec-CCceEEEEEe---CCeEEEEE-CCeEEEEEcCCCeEEE-EEecc-------C--
Q 022387          160 IWDDHQSR----------CIGELSF-RSEVRSVKLR---RDRIIVVL-EQKIFVYNFADLKLLH-QIETI-------A--  214 (298)
Q Consensus       160 iWD~~~~~----------~~~~~~~-~~~v~~v~~~---~~~l~v~~-~~~I~iwd~~~~~~i~-~~~~~-------~--  214 (298)
                      |+|+...+          .+.-+.. ...|..++.-   |..+.++. +|+|+-||++...... ....+       .  
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99987521          1111222 2356666553   34455554 6999999997522111 00000       0  


Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--c-----------c------eE-eecccc-----------cceeE
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K-----------R------TK-FIMAHD-----------SRIAC  263 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~-----------~------~~-~~~~H~-----------~~V~~  263 (298)
                      -...++.+++.- ..+||+ |..|-..++||...  +           +      +. -..+|.           ..++-
T Consensus       201 ielk~ltisp~r-p~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  201 IELKCLTISPSR-PYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             heeeeeeecCCC-CceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            012356777653 367775 99999999988320  0           0      11 112232           12567


Q ss_pred             EEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          264 FALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       264 l~fspdg~-~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++|+|+|. +|++-+-+  .|.+||+..++-...|
T Consensus       279 vtfnpNGtElLvs~~gE--hVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGE--HVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EEECCCCcEEEEeeCCe--EEEEEeecCCCCceee
Confidence            78999995 55554433  5999999998876554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=3.5e-09  Score=99.31  Aligned_cols=199  Identities=14%  Similarity=0.079  Sum_probs=125.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      +...+.+.+|||||+.||..+.    ..+.+|++++++......+  .+......|++++..++++....    ....|.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~La~~~~~~----g~~~I~  270 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSKLAFALSKT----GSLNLY  270 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCEEEEEEcCC----CCcEEE
Confidence            3457899999999999886432    2367889887654333332  34445678899999888765322    124699


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +||+.+++..+.......+....|+++  .++...+  +  .|.++|+.+++. +.+...........++  +|+..+++
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~S--pDG~~Ia~  347 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS--SDGKFMVM  347 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEEC--CCCCEEEE
Confidence            999998876554444456677888875  3444443  3  455556665543 3443322223334454  45577776


Q ss_pred             ecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC--EEEEEECCCCcE
Q 022387          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTL  293 (298)
Q Consensus       234 sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt--~IrIWd~~tg~~  293 (298)
                      .+..++  .|.+++..+.....+... .......|+|||++|+.++.|+.  .+.++++. |+.
T Consensus       348 ~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~  409 (429)
T PRK03629        348 VSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRF  409 (429)
T ss_pred             EEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCC
Confidence            555544  466688877766555432 23457789999999999998874  25666763 443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.25  E-value=2.9e-10  Score=106.30  Aligned_cols=186  Identities=11%  Similarity=0.123  Sum_probs=134.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      .|..++|-|||+.|+.+.++.+.|||...+..+-..+. |...+.+++++.++..+|..+       .|+.|.+|.-+-.
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~-------aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCC-------CceeEEEeccccc
Confidence            78999999999999999899989999988887666665 678899999999998887765       7899999986432


Q ss_pred             cEEEEeecCCceEEEEEeC--CeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387          167 RCIGELSFRSEVRSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (298)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~--~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~  244 (298)
                      . +....+...|-|+.|+|  ..++.|.=+..-+|...+...    ..+.....++..++..||+++|. |..||+|.|.
T Consensus        86 G-~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V----~K~kss~R~~~CsWtnDGqylal-G~~nGTIsiR  159 (1081)
T KOG1538|consen   86 G-ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV----SKHKSSSRIICCSWTNDGQYLAL-GMFNGTISIR  159 (1081)
T ss_pred             c-eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH----HhhhhheeEEEeeecCCCcEEEE-eccCceEEee
Confidence            2 33556667899999998  455556557788887653322    22333456778888888999997 9999999997


Q ss_pred             EcCCcceEee---cccccceeEEEECCCC-----CEEEEEeCCCCEEEEEE
Q 022387          245 HYASKRTKFI---MAHDSRIACFALTQDG-----QLLATSSTKGTLVRIFN  287 (298)
Q Consensus       245 ~~~~~~~~~~---~~H~~~V~~l~fspdg-----~~lAt~S~Dgt~IrIWd  287 (298)
                      +...++-..+   -+.+++|++|+|+|..     ..+|...+..| +-.+.
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~  209 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQ  209 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEE
Confidence            6554432222   2466778888887752     24444444444 43333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=8.3e-10  Score=94.88  Aligned_cols=155  Identities=15%  Similarity=0.179  Sum_probs=108.5

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc----EEEEee-cCCceEEEEEe-C---CeEEEEE-CCe
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLR-R---DRIIVVL-EQK  195 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~----~~~~~~-~~~~v~~v~~~-~---~~l~v~~-~~~  195 (298)
                      |..-+..+.+.|.++.+|+++       .|++|+|||.+...    +....+ +.+.|..+.|- +   +.+++|. |++
T Consensus        12 h~DlihdVs~D~~GRRmAtCS-------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCS-------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             CcceeeeeeecccCceeeecc-------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            344467788889999999998       78999999975432    333444 44688888884 3   3344443 689


Q ss_pred             EEEEEcC---------CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC-------------------
Q 022387          196 IFVYNFA---------DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-------------------  247 (298)
Q Consensus       196 I~iwd~~---------~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~-------------------  247 (298)
                      +.||.=.         ......++......+.-+.|++..-|..+|+ .+.||+++||+.-                   
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            9999741         1223334444445566677777777788884 8888888887610                   


Q ss_pred             ----------------------------------------------Cc---ceEeecccccceeEEEECCC----CCEEE
Q 022387          248 ----------------------------------------------SK---RTKFIMAHDSRIACFALTQD----GQLLA  274 (298)
Q Consensus       248 ----------------------------------------------~~---~~~~~~~H~~~V~~l~fspd----g~~lA  274 (298)
                                                                    .+   .+.++..|..+|+.|+|.|+    ..+||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence                                                          00   11245678899999999997    36899


Q ss_pred             EEeCCCCEEEEEECCC
Q 022387          275 TSSTKGTLVRIFNTLD  290 (298)
Q Consensus       275 t~S~Dgt~IrIWd~~t  290 (298)
                      +++.||  ||||.+..
T Consensus       244 vA~kDg--v~I~~v~~  257 (361)
T KOG2445|consen  244 VATKDG--VRIFKVKV  257 (361)
T ss_pred             EeecCc--EEEEEEee
Confidence            999998  89999884

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.23  E-value=1.6e-09  Score=93.61  Aligned_cols=198  Identities=14%  Similarity=0.123  Sum_probs=138.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCc-eEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+|+|.+|++|++.+|++-+. -+-||.+...+ ......+. |+..+..++|.+..+.+++++       .|+...||
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-------~drnayVw   82 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-------HDRNAYVW   82 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-------CCCCcccc
Confidence            3589999999999999999884 57899886655 32222222 788899999999999999888       78999999


Q ss_pred             eCCC-Cc---EEEEeecCCceEEEEEeCC--eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCc--ceEEEEeCCCCeEEE
Q 022387          162 DDHQ-SR---CIGELSFRSEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLV  232 (298)
Q Consensus       162 D~~~-~~---~~~~~~~~~~v~~v~~~~~--~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~--~~~~~s~~~d~~~la  232 (298)
                      .... +.   .+..+.++..++++.|+++  .+++... ..|.||=++..+--..-+.-..|+  .+.++++++++.+||
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            9843 32   3445677888999999874  5555543 577777664332211111111121  245666777778888


Q ss_pred             EecCCCceEEEEEc-----CCcc--------------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          233 CPGLQKGQVRVEHY-----ASKR--------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       233 ~sGs~dg~v~i~~~-----~~~~--------------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      + |+.|+.++|...     +.++              +.++....+-|..+.|+|+|..||=.+.|.+ |.+=|....
T Consensus       163 a-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p  238 (361)
T KOG1523|consen  163 A-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGP  238 (361)
T ss_pred             c-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCC
Confidence            5 999999999542     2211              1133344567999999999999999999999 888886654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=1.1e-09  Score=100.99  Aligned_cols=197  Identities=15%  Similarity=0.208  Sum_probs=133.1

Q ss_pred             CCCCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           84 PPPTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ++...+.|..+|||+|+. +|.- -.|++||+......+.+.+. ...+...-++-+-...++..       .|++|.+-
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD-ae~V~feiLsDD~SK~v~L~-------~DR~IefH  121 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD-AEVVDFEILSDDYSKSVFLQ-------NDRTIEFH  121 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc-ccceeEEEeccchhhheEee-------cCceeeeh
Confidence            444677899999999855 5544 45899999988887777761 22223222222222233333       34555432


Q ss_pred             eCCCCcEEEEeecCCceEEEEE---eCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          162 DDHQSRCIGELSFRSEVRSVKL---RRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~---~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      .-  ......+..+.....+.+   +-+.++++....|+-+++..+.-+..|......+.+|.++.-  +.+||+ |..+
T Consensus       122 ak--~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~--hgLla~-Gt~~  196 (703)
T KOG2321|consen  122 AK--YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE--HGLLAC-GTED  196 (703)
T ss_pred             hh--cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc--cceEEe-cccC
Confidence            21  111222222223333443   446777778889999999999999888887777777777664  478886 9999


Q ss_pred             ceEEEEEcCCcceE-------eeccccc-----ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          239 GQVRVEHYASKRTK-------FIMAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       239 g~v~i~~~~~~~~~-------~~~~H~~-----~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      |.|..||-..+...       .+..|.+     .|++|.|+.||-.+|.|..+|. |.|+|+++.+.+
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl  263 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPL  263 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCce
Confidence            99999998765421       2233433     4999999999999999999999 999999987654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.22  E-value=1.3e-09  Score=102.14  Aligned_cols=202  Identities=14%  Similarity=0.111  Sum_probs=125.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC-------
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-------  152 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  152 (298)
                      ..+|+..|+||+|+.||+.+|+|+.|. +.||+-+--+. ....  |+..+.++.+.+-...++.++-++-..       
T Consensus        49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkYS--H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~  125 (1081)
T KOG1538|consen   49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKYS--HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS  125 (1081)
T ss_pred             cccccceEEEEEEccCCceeccCCCceeEEEecccccce-eeec--cCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence            457889999999999999999999866 66997543322 1222  444444444433223333322221111       


Q ss_pred             -------------------------CCCCeEEEEeCCCCcEEEEee---cCCceEEEEEeCC-------eEEEEE-CCeE
Q 022387          153 -------------------------YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD-------RIIVVL-EQKI  196 (298)
Q Consensus       153 -------------------------~~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~-------~l~v~~-~~~I  196 (298)
                                               ..+|+|.|=+....+.+..-.   -+++|.+++|++.       .+.++. +.++
T Consensus       126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence                                     134555554432222222111   2358999999763       233332 3677


Q ss_pred             EEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387          197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~  276 (298)
                      .+|.+.. +.|.+-+.-.  ..-++++.-++|.++.+ |+.||.+.++..+.-.+-++-..+.-|++|+..|++++.+.|
T Consensus       206 SFy~LsG-~~Igk~r~L~--FdP~CisYf~NGEy~Li-GGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  206 SFYQLSG-KQIGKDRALN--FDPCCISYFTNGEYILL-GGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             EEEEecc-eeecccccCC--CCchhheeccCCcEEEE-ccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence            7777643 3222212111  12234445555688876 899999999988877777777778889999999999999999


Q ss_pred             eCCCCEEEEEECCC
Q 022387          277 STKGTLVRIFNTLD  290 (298)
Q Consensus       277 S~Dgt~IrIWd~~t  290 (298)
                      ..||| |--|++..
T Consensus       282 CqDGT-iACyNl~f  294 (1081)
T KOG1538|consen  282 CQDGT-IACYNLIF  294 (1081)
T ss_pred             EccCe-eehhhhHH
Confidence            99999 88887653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=6.2e-09  Score=97.81  Aligned_cols=198  Identities=11%  Similarity=0.050  Sum_probs=123.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ++..+.+.+|+|||+.||..+. +   .+.+|++.+++......+  .+......+++++..+++....+    ....|.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~~~SpDG~~l~~~~s~~----g~~~Iy  275 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAPSFSPDGRRLALTLSRD----GNPEIY  275 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCceECCCCCEEEEEEeCC----CCceEE
Confidence            4557899999999999997763 2   277889887665333332  33444567888888877654321    234699


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +||+.+++...............|+++  .++...+  +  .|.++|+.+++. +.+..+.......++++  |+..+++
T Consensus       276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~  352 (433)
T PRK04922        276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSP--DGKKIAM  352 (433)
T ss_pred             EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECC--CCCEEEE
Confidence            999998875443333334456778775  4555543  2  477777766553 33332222233345554  5577776


Q ss_pred             ecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCCC
Q 022387          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDG  291 (298)
Q Consensus       234 sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg  291 (298)
                      ....++  .|.+|+..++....+. +.......+|+|||++|+..+.++  ..|.++++..+
T Consensus       353 ~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        353 VHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            433443  5777998777666554 333456789999999988877642  23777777543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=2.6e-08  Score=93.70  Aligned_cols=201  Identities=7%  Similarity=-0.015  Sum_probs=124.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .+...+.+.+|+|||+.||..+.    ..+.+|++.+++......+  .+.+....+++++..+++....+    ....|
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~~~----g~~~I  272 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF--PGMTFAPRFSPDGRKVVMSLSQG----GNTDI  272 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC--CCcccCcEECCCCCEEEEEEecC----CCceE
Confidence            44568999999999999887653    2377999987765322222  44555667888888877665321    13458


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      .+||+.+++...............|+++  .++...+    ..|.++|+.+++. +.+..+........++  +|+..|+
T Consensus       273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia  349 (435)
T PRK05137        273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWS--PRGDLIA  349 (435)
T ss_pred             EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEEC--CCCCEEE
Confidence            8889988766443333334555778765  4555543    3688889866544 3443322223334444  5557777


Q ss_pred             EecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC-----CEEEEEECCCCcE
Q 022387          233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTL  293 (298)
Q Consensus       233 ~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg-----t~IrIWd~~tg~~  293 (298)
                      +.....+  .|.+++...+....+. +...+..+.|+|||++|+..+.++     ..+.+.|+..++.
T Consensus       350 ~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        350 FTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            6444344  5666777665544443 233578899999999988766542     2377888766543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.16  E-value=1.3e-09  Score=99.75  Aligned_cols=141  Identities=13%  Similarity=0.205  Sum_probs=94.6

Q ss_pred             CCCeEEEEeCCCCcEEEEeec-----CCceEEEEEeC--C-eEEEE-ECCeEEEEEcCC--------------CeEEE--
Q 022387          154 PLNKVMIWDDHQSRCIGELSF-----RSEVRSVKLRR--D-RIIVV-LEQKIFVYNFAD--------------LKLLH--  208 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~-----~~~v~~v~~~~--~-~l~v~-~~~~I~iwd~~~--------------~~~i~--  208 (298)
                      ..+.|.+.|....+..+.+..     ...|+++.|-+  + .++++ .++.+.+||..-              +..+.  
T Consensus       193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL  272 (636)
T ss_pred             ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence            346688777665332222221     25788888853  2 33333 468888887631              11111  


Q ss_pred             EEec--cCCCcc--------eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEe
Q 022387          209 QIET--IANPKG--------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSS  277 (298)
Q Consensus       209 ~~~~--~~~~~~--------~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S  277 (298)
                      +-+.  ..+|+.        +..|++.+|+.+||+ -+.||.++|+++....+. .++..-+...||+|||||+|+|||+
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~-VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG  351 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLAT-VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG  351 (636)
T ss_pred             eeeccccCCccceeEeccccccceeEcCCCceEEE-EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence            1111  112322        234455567899996 799999999999876654 6677778999999999999999999


Q ss_pred             CCCCEEEEEECCCCcEEEe
Q 022387          278 TKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       278 ~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +|.- |.||.+..++++..
T Consensus       352 EDDL-VtVwSf~erRVVAR  369 (636)
T KOG2394|consen  352 EDDL-VTVWSFEERRVVAR  369 (636)
T ss_pred             Ccce-EEEEEeccceEEEe
Confidence            9997 99999999988753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.2e-08  Score=93.93  Aligned_cols=185  Identities=12%  Similarity=0.091  Sum_probs=112.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-Ce---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~-~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .+...+.+.+|+|||+.||..+. ++   +.+||+.+++......+  .+......|++++..+++...      .++..
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~------~~g~~  264 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAPAWSPDGRTLAVALS------RDGNS  264 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEc------cCCCc
Confidence            34567899999999999987764 32   77889987765433332  345566788899988877543      23445


Q ss_pred             EEE--eCCCCcEEEEeec-CCceEEEEEeCC--eEEEEEC--CeEEEE--EcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387          159 MIW--DDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVLE--QKIFVY--NFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       159 ~iW--D~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~~--~~I~iw--d~~~~~~i~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      .||  |...+.. ..+.. ........|+++  .++...+  +...+|  ++.+++. ..+..........+++  +|+.
T Consensus       265 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~S--pDG~  340 (427)
T PRK02889        265 QIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRIS--PDGK  340 (427)
T ss_pred             eEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEEC--CCCC
Confidence            555  5555543 33332 233455678775  4444443  445555  4444432 2222222222233444  4557


Q ss_pred             EEEEecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC
Q 022387          230 VLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       230 ~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg  280 (298)
                      ++++....+|  .|.+|++..+....+..+ .......|+|||++|+.++.++
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecC
Confidence            7776444444  577799887766655433 3457889999999999888666

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.14  E-value=1.5e-09  Score=97.66  Aligned_cols=209  Identities=11%  Similarity=0.080  Sum_probs=133.5

Q ss_pred             CcccCCCCCCeEEEEEcCCC--CEEEEEcCCeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           78 ESTSSSPPPTLLHISFNQDH--GCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg--~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ..+...|..+|.++.|+|..  ..+++..++++|.-|++........... .......+.+..+...++++.       .
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~-------~  299 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD-------N  299 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee-------c
Confidence            34456788899999999954  3455555666999888765422222210 012223333344444444444       3


Q ss_pred             CCeEEEEeCCCCcE-EEEeecC-CceEEEEEeC---CeEEEE-ECCeEEEEEcCCCeEEE----EEeccCCCcceEEEEe
Q 022387          155 LNKVMIWDDHQSRC-IGELSFR-SEVRSVKLRR---DRIIVV-LEQKIFVYNFADLKLLH----QIETIANPKGLCAVSQ  224 (298)
Q Consensus       155 d~~v~iWD~~~~~~-~~~~~~~-~~v~~v~~~~---~~l~v~-~~~~I~iwd~~~~~~i~----~~~~~~~~~~~~~~s~  224 (298)
                      -|...+||.+++.. ...+..+ ..|..++++|   ..++.+ .+++.+|||++....-.    ..-.|...+.+..|||
T Consensus       300 ~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP  379 (498)
T KOG4328|consen  300 VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP  379 (498)
T ss_pred             ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence            36789999998654 4344443 4899999986   345554 36899999997644322    2233666777778877


Q ss_pred             CCCCeEEEEecCCCceEEEEEcC----CcceEeeccccc------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYA----SKRTKFIMAHDS------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~----~~~~~~~~~H~~------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      ++  ..|++ -..|..|+|||..    ..+....-.|..      ..---+|.|+..+++.|-.-.. |-|+|-..|+.+
T Consensus       380 s~--gtl~T-T~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~-IDv~~~~~~q~v  455 (498)
T KOG4328|consen  380 SG--GTLLT-TCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP-IDVFDGNGGQMV  455 (498)
T ss_pred             CC--CceEe-eccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc-eeEEcCCCCEEe
Confidence            65  44664 6888999999984    222221112221      1334479999999999999998 999998888877


Q ss_pred             Eec
Q 022387          295 QEG  297 (298)
Q Consensus       295 ~~~  297 (298)
                      .++
T Consensus       456 ~el  458 (498)
T KOG4328|consen  456 CEL  458 (498)
T ss_pred             eec
Confidence            663

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.13  E-value=1.7e-08  Score=84.36  Aligned_cols=153  Identities=10%  Similarity=0.135  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCEEEEEcC-C----------eEEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           89 LHISFNQDHGCFAAGTD-H----------GFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~-~----------gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ..+.|+++|++|++-.. +          ...||.++... ......+...+.+..+.|.++++.++++.|.     .++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----MPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----CCc
Confidence            35789999998774332 1          13466663322 2222333124568999999999999888753     467


Q ss_pred             eEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE----CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      .|.+||++ ++.+.++. ...+..+.|+|+  .+++++    .|.|.+||+++.+.+.++...    .+..+.++|||.+
T Consensus        84 ~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~  157 (194)
T PF08662_consen   84 KVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRY  157 (194)
T ss_pred             ccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCE
Confidence            99999996 55555554 346778999885  444443    368999999999988776532    3466777788899


Q ss_pred             EEEecCC-----CceEEEEEcCCcceE
Q 022387          231 LVCPGLQ-----KGQVRVEHYASKRTK  252 (298)
Q Consensus       231 la~sGs~-----dg~v~i~~~~~~~~~  252 (298)
                      ++++.+.     |..++||++..+.+.
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~G~~l~  184 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQGRLLY  184 (194)
T ss_pred             EEEEEeccceeccccEEEEEecCeEeE
Confidence            9876553     888999999876554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.09  E-value=1.4e-09  Score=99.59  Aligned_cols=178  Identities=12%  Similarity=0.026  Sum_probs=121.6

Q ss_pred             EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCce
Q 022387           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV  178 (298)
Q Consensus        99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v  178 (298)
                      ++++.+++.+.|.+.. ++....... |.+.+.+-.|.+++..+.++|       .||.|++|...-.---.-.++..+|
T Consensus        78 ~~i~s~DGkf~il~k~-~rVE~sv~A-H~~A~~~gRW~~dGtgLlt~G-------EDG~iKiWSrsGMLRStl~Q~~~~v  148 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKS-ARVERSISA-HAAAISSGRWSPDGAGLLTAG-------EDGVIKIWSRSGMLRSTVVQNEESI  148 (737)
T ss_pred             EEEEcCCceEEEeccc-chhhhhhhh-hhhhhhhcccCCCCceeeeec-------CCceEEEEeccchHHHHHhhcCcee
Confidence            4444444445554422 222112222 677777778888888888887       7899999985432111123455689


Q ss_pred             EEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc
Q 022387          179 RSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (298)
Q Consensus       179 ~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~  256 (298)
                      .|+.|.++  .++.|..+.+.|=-+.-...+.+.+.|...+.+++  +++...+++ +|+.|=..+|||-....+.+-..
T Consensus       149 ~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~--W~~~s~lI~-sgGED~kfKvWD~~G~~Lf~S~~  225 (737)
T KOG1524|consen  149 RCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLS--WSTQSNIIA-SGGEDFRFKIWDAQGANLFTSAA  225 (737)
T ss_pred             EEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEee--cCcccccee-ecCCceeEEeecccCcccccCCh
Confidence            99999764  56666678888887766666667788876655555  444557777 69999999999988887777788


Q ss_pred             cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       257 H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      |.-+|++|+|+|| +.+|.+|..  ..|+=..+.|
T Consensus       226 ~ey~ITSva~npd-~~~~v~S~n--t~R~~~p~~G  257 (737)
T KOG1524|consen  226 EEYAITSVAFNPE-KDYLLWSYN--TARFSSPRVG  257 (737)
T ss_pred             hccceeeeeeccc-cceeeeeee--eeeecCCCcc
Confidence            9999999999998 888888755  2664444434

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.2e-09  Score=95.65  Aligned_cols=157  Identities=20%  Similarity=0.240  Sum_probs=111.6

Q ss_pred             EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc-EEEEeecCCceEEEEEeCCeEE--EEECCeEEEEEcCCCeEE
Q 022387          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSFRSEVRSVKLRRDRII--VVLEQKIFVYNFADLKLL  207 (298)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-~~~~~~~~~~v~~v~~~~~~l~--v~~~~~I~iwd~~~~~~i  207 (298)
                      .++++.+++..+++.+       .||++|||++-+.. ...+..++.+|.++.|+++..+  ..+.+..+||+.+++..+
T Consensus       148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeecc-------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence            6677777878888877       78999999965544 4445667889999999987633  334569999999998776


Q ss_pred             EEEeccC--CCcceEEEEeCC--CCeEEEEecCCCceEEEEEcCCc------ceEeecccccceeEEEECCCCCEEEEEe
Q 022387          208 HQIETIA--NPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK------RTKFIMAHDSRIACFALTQDGQLLATSS  277 (298)
Q Consensus       208 ~~~~~~~--~~~~~~~~s~~~--d~~~la~sGs~dg~v~i~~~~~~------~~~~~~~H~~~V~~l~fspdg~~lAt~S  277 (298)
                      .+.....  .....|.|+.++  +..++|+.-..-|.|+.++....      +..+...-...|++++.|+||+++|-|+
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence            6654322  223467777665  23456654455566666554421      1122223345799999999999999999


Q ss_pred             CCCCEEEEEECCCCcEEE
Q 022387          278 TKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       278 ~Dgt~IrIWd~~tg~~l~  295 (298)
                      .||. |-|++..+.++++
T Consensus       301 ~dGs-Vai~~~~~lq~~~  317 (398)
T KOG0771|consen  301 MDGS-VAIYDAKSLQRLQ  317 (398)
T ss_pred             cCCc-EEEEEeceeeeeE
Confidence            9999 9999999887764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.08  E-value=1.4e-07  Score=86.62  Aligned_cols=201  Identities=15%  Similarity=0.136  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      ..+.|+|||+++.+.+.+| +.++|+.+.+.+.+...  ......+.++.++.+++++..      .++++.++|.++.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle  111 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLE  111 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEec------CCCceeEecccccc
Confidence            4477999999988887755 77999999988766664  566777888899998887762      46889999998887


Q ss_pred             EEEEeecC--------CceEEEEE--------------------------------------------eCC--eEEEEE-
Q 022387          168 CIGELSFR--------SEVRSVKL--------------------------------------------RRD--RIIVVL-  192 (298)
Q Consensus       168 ~~~~~~~~--------~~v~~v~~--------------------------------------------~~~--~l~v~~-  192 (298)
                      .+.++...        +++.++..                                            +++  +++++. 
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence            76654321        12222211                                            111  233332 


Q ss_pred             -CCeEEEEEcCCCeEEEEEeccCCCc----------------------------------------------------ce
Q 022387          193 -EQKIFVYNFADLKLLHQIETIANPK----------------------------------------------------GL  219 (298)
Q Consensus       193 -~~~I~iwd~~~~~~i~~~~~~~~~~----------------------------------------------------~~  219 (298)
                       ++.|-++|..+++.+..+.....+.                                                    .-
T Consensus       192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence             3577777777666555443211100                                                    01


Q ss_pred             EEEEeCCCCeEEEEe---cCCCceEEEEEcCCcce-Eeecccc-cceeEEEECCCCCEEEEEeCCCC-EEEEEECCCCcE
Q 022387          220 CAVSQGVGSLVLVCP---GLQKGQVRVEHYASKRT-KFIMAHD-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTL  293 (298)
Q Consensus       220 ~~~s~~~d~~~la~s---Gs~dg~v~i~~~~~~~~-~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt-~IrIWd~~tg~~  293 (298)
                      +.+..+|++.++.+.   +...+.|.+.|.++.+. .++.... ..+..+.|++||+++-.+..|+. .|.|+|..|.++
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            122334455566554   45567888888776543 3444322 35999999999985555544333 499999999999


Q ss_pred             EEec
Q 022387          294 LQEG  297 (298)
Q Consensus       294 l~~~  297 (298)
                      ++++
T Consensus       352 ~~~i  355 (369)
T PF02239_consen  352 KKRI  355 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=1e-09  Score=99.44  Aligned_cols=81  Identities=17%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             EeccCCCcceEEEEeCC-CCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          210 IETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       210 ~~~~~~~~~~~~~s~~~-d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +++|.+...+-.+++-+ ...+++ ||+.-|.|.||+.++.++. .+.+-...|+||.=+|--..|||+|-|.. ||||-
T Consensus       387 YKGHrN~~TVKgVNFfGPrsEyVv-SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D-VKIWT  464 (559)
T KOG1334|consen  387 YKGHRNSRTVKGVNFFGPRSEYVV-SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD-VKIWT  464 (559)
T ss_pred             hcccccccccceeeeccCccceEE-ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccc-eeeec
Confidence            66776655554555433 345555 7999999999999987755 45665569999999999999999999999 99998


Q ss_pred             CCCCc
Q 022387          288 TLDGT  292 (298)
Q Consensus       288 ~~tg~  292 (298)
                      -.+.+
T Consensus       465 P~~~e  469 (559)
T KOG1334|consen  465 PLTAE  469 (559)
T ss_pred             CCccc
Confidence            75443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.08  E-value=2.2e-09  Score=93.20  Aligned_cols=195  Identities=15%  Similarity=0.068  Sum_probs=127.1

Q ss_pred             EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~  169 (298)
                      -++|||+|+|+|+.++-.+.|-|..+.+.......  -..+..+.|..+...+..+.      +.++.|.+|++...+..
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~------yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA------YKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeee------eccceEEEEEeecceeE
Confidence            37899999999999987777777777653211111  23455667766665544333      25688999999998888


Q ss_pred             EEeecCC-ceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC--------
Q 022387          170 GELSFRS-EVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL--------  236 (298)
Q Consensus       170 ~~~~~~~-~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs--------  236 (298)
                      ..++..+ .+.++.|+++.  ++..+  +-+|.+|.+.+.+... ++-.......++|++  |+++.|+...        
T Consensus        85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~--dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHP--DGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECC--CCceeeeeecccHHHHHH
Confidence            8887654 67788999875  33332  3689999998776533 222222233445544  4466554211        


Q ss_pred             --------------------------CCc-eEEEEEcCCcceEeecccc-cceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          237 --------------------------QKG-QVRVEHYASKRTKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       237 --------------------------~dg-~v~i~~~~~~~~~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                                                -|| .+.+||.-.+ .+.+..|. -.|..++|+|.+++||.||.|+. +||-+-
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh  239 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNH  239 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-heeeeeeeccceeEEEeccccceEEeeccchh-hhhhce
Confidence                                      134 4444775433 22333444 46999999999999999999999 999886


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      -+-+.+.||
T Consensus       240 ~tWk~f~ef  248 (447)
T KOG4497|consen  240 FTWKPFGEF  248 (447)
T ss_pred             eeeeehhhh
Confidence            666555544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.4e-09  Score=97.78  Aligned_cols=209  Identities=18%  Similarity=0.093  Sum_probs=143.9

Q ss_pred             CcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC-CceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP-FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      |..+++|+..|+.|.-+ -.+++.+++-+| +++|.... ....+...++ |.+.+..++.+.++.++.+++.      .
T Consensus         2 yeksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d------~   74 (558)
T KOG0882|consen    2 YEKSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED------P   74 (558)
T ss_pred             cchhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC------c
Confidence            66789999999887655 357899999877 67997665 4455555553 4555566666677766666551      3


Q ss_pred             CCeEEEEeCCCCcEEEEe--ecCCceEEEEEeCC----eEEEEE--CCeEEEEEcC-CC-eEEEEEeccCCCcceEEEEe
Q 022387          155 LNKVMIWDDHQSRCIGEL--SFRSEVRSVKLRRD----RIIVVL--EQKIFVYNFA-DL-KLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~--~~~~~v~~v~~~~~----~l~v~~--~~~I~iwd~~-~~-~~i~~~~~~~~~~~~~~~s~  224 (298)
                      |+.+|++|+++-..+.-+  .+-....++..++.    .+++..  ++.|.++|-. +. +.....+-|..++..+.+.+
T Consensus        75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q  154 (558)
T KOG0882|consen   75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ  154 (558)
T ss_pred             ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence            799999999875544333  33233333333333    333332  4799999984 33 33333344888888888888


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCC------cc----------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYAS------KR----------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~------~~----------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      .+|.  .+ |+...|.|..|..+.      ..          +..+...+....++.|+|+|..+++-+.|.+ ||++++
T Consensus       155 a~Ds--~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~  230 (558)
T KOG0882|consen  155 AGDS--AV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVF  230 (558)
T ss_pred             cccc--ee-eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEe
Confidence            7643  22 478889999998762      11          1133455678999999999999999999998 999999


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      ++|++++++
T Consensus       231 KtGklvqei  239 (558)
T KOG0882|consen  231 KTGKLVQEI  239 (558)
T ss_pred             ccchhhhhh
Confidence            999998765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.03  E-value=5e-09  Score=96.06  Aligned_cols=176  Identities=13%  Similarity=0.082  Sum_probs=119.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|.+.|.+-.|+|||.=|.++++|| |++|.-.-.-......  .+..+.++.|.++++.++.+.|        +.+.|
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q--~~~~v~c~~W~p~S~~vl~c~g--------~h~~I  170 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ--NEESIRCARWAPNSNSIVFCQG--------GHISI  170 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh--cCceeEEEEECCCCCceEEecC--------CeEEE
Confidence            45677899999999999999999988 6799754321111111  2568899999999888877764        34555


Q ss_pred             EeCCCCcEEEEee-cCCceEEEEEeCCeEE--EEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRII--VVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~-~~~~v~~v~~~~~~l~--v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      =-+..+..+...+ +.+-|.++.|++..-+  .+++ -+.++||-.. +.+.+-..|..++.+++++++   ..+++ |+
T Consensus       171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd---~~~~v-~S  245 (737)
T KOG1524|consen  171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE---KDYLL-WS  245 (737)
T ss_pred             eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc---cceee-ee
Confidence            5555544444444 5578999999875433  3333 4899999764 444455667778777777665   34443 55


Q ss_pred             CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I  283 (298)
                      .+ +++          .-+...+.|..++||+||..+|.|...|.+|
T Consensus       246 ~n-t~R----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  246 YN-TAR----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             ee-eee----------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence            43 222          1123457899999999999999999888733

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.03  E-value=1.5e-07  Score=87.67  Aligned_cols=201  Identities=10%  Similarity=0.068  Sum_probs=122.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      +...+...+|+|||++||.... +   .+.+|++.+++......+  .+......+++++..+++.....    ....|.
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--~~~~~~~~~spDg~~l~~~~~~~----~~~~i~  261 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF--PGMNGAPAFSPDGSKLAVSLSKD----GNPDIY  261 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEECCC----CCccEE
Confidence            3446888999999999987653 2   377899988754333332  34455577888888777655322    235699


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +||+.+++......+........|+++  .++...+    ..|.++|+.+++. ..+..+........+++  ++.++++
T Consensus       262 ~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~sp--dg~~i~~  338 (417)
T TIGR02800       262 VMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSP--DGDLIAF  338 (417)
T ss_pred             EEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECC--CCCEEEE
Confidence            999988765433333333445567654  4555443    2688888876654 33433333333445544  5567776


Q ss_pred             ecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC--EEEEEECCCCcEEE
Q 022387          234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQ  295 (298)
Q Consensus       234 sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt--~IrIWd~~tg~~l~  295 (298)
                      +....+  .|.+++...+....+..+ ......+|+|||++|+..+.++.  .+.+.+. +|+..+
T Consensus       339 ~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~  402 (417)
T TIGR02800       339 VHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRA  402 (417)
T ss_pred             EEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence            444333  566688776655544433 23456789999999988877653  2555553 344433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.03  E-value=3.9e-08  Score=84.15  Aligned_cols=190  Identities=9%  Similarity=0.058  Sum_probs=133.1

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecCC-CEEEEEeCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL  155 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d  155 (298)
                      .....+++++..|+. |-++|.+.+-|+ ..||+++++.  .+.+.-++|++.+.-+++...+ +.+|.+|       .|
T Consensus       146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg-------aD  218 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG-------AD  218 (364)
T ss_pred             ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec-------CC
Confidence            345567999999997 667888888776 5699999862  2333334478888888887643 4566666       68


Q ss_pred             CeEEEEeCCCCcEEE-Eeec---CCceEEEEEeCC---eEEEE--ECCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeC
Q 022387          156 NKVMIWDDHQSRCIG-ELSF---RSEVRSVKLRRD---RIIVV--LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~-~~~~---~~~v~~v~~~~~---~l~v~--~~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~  225 (298)
                      |.||+||++..+.-. .++-   +.+...++++++   .++..  .+..|.|.|++. ..++.+++.|...+..++..++
T Consensus       219 GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh  298 (364)
T KOG0290|consen  219 GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH  298 (364)
T ss_pred             CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC
Confidence            999999998754221 1221   335677777753   44432  247999999975 4677889999999988998887


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcceE------eecccccceeEEEECCC-CCEEEEEeCC
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFALTQD-GQLLATSSTK  279 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~~------~~~~H~~~V~~l~fspd-g~~lAt~S~D  279 (298)
                      ... .|+ +++.|-.+.|||+......      ......+.|+.|.|++. +.+||.+...
T Consensus       299 S~~-hic-taGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  299 SSS-HIC-TAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             CCc-eee-ecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence            643 444 5899999999998754321      11224578999999964 7899988633

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.02  E-value=4e-09  Score=93.64  Aligned_cols=178  Identities=14%  Similarity=0.189  Sum_probs=121.8

Q ss_pred             CCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCC---c----eEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           85 PPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPF---R----EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        85 ~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ..+|.++.|.+++. .||+|+. ..|+||-+...   +    ..+.-.+. |...+.++.+.++++.+|.++       +
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D   85 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------D   85 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------C
Confidence            35899999999877 9999886 55999976332   2    22222221 677788888888888887776       5


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +++|.+|-...-...     ...- ....         +.       +.....+.+.+|...+  ..+++.+++.+++ +
T Consensus        86 ~g~v~lWk~~~~~~~-----~~d~-e~~~---------~k-------e~w~v~k~lr~h~~di--ydL~Ws~d~~~l~-s  140 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIF-----DADT-EADL---------NK-------EKWVVKKVLRGHRDDI--YDLAWSPDSNFLV-S  140 (434)
T ss_pred             CceEEEEEecCcCCc-----cccc-hhhh---------Cc-------cceEEEEEecccccch--hhhhccCCCceee-e
Confidence            699999986541100     0000 0000         00       0011122334444433  4455566668888 5


Q ss_pred             cCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          235 GLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      |+.|..+++||.....+. .+..|...|.-++|.|-.+++++-|.|.. .+++.+...++++
T Consensus       141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~-~~~~~~~~~~~~~  201 (434)
T KOG1009|consen  141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH-PEGFSAKLKQVIK  201 (434)
T ss_pred             eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc-cceeeeeeeeeee
Confidence            999999999999887654 78899999999999999999999999997 8888887766553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=3.3e-08  Score=92.83  Aligned_cols=174  Identities=14%  Similarity=0.097  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC
Q 022387          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (298)
Q Consensus       107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~  186 (298)
                      .+.+||.+.........  +...+....|++++..+++++.++    .+.+|.+||+.+++......+......+.|+++
T Consensus       185 ~i~i~d~dg~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~~~----~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQFIVNR--SSQPLMSPAWSPDGSKLAYVSFEN----KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCceEecc--CCCccccceEcCCCCEEEEEEecC----CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            36677776544322111  345577788999999998877432    235799999988764333333344556788876


Q ss_pred             --eEEEEE--CCe--EEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccc
Q 022387          187 --RIIVVL--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD  258 (298)
Q Consensus       187 --~l~v~~--~~~--I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~  258 (298)
                        .++++.  ++.  |.+||+.+++. ..+..+........++  +|+..|++++..+|...||++..  .....+ .|.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS--PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence              455543  354  44556655543 4555444434444554  45576666566778888877643  323333 444


Q ss_pred             cceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       259 ~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .  .+++|||||++||..+.++  |.+||+.+|+..
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~  366 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTE  366 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeE
Confidence            4  5678999999999988765  445999988653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.4e-07  Score=86.92  Aligned_cols=198  Identities=13%  Similarity=0.085  Sum_probs=119.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .+...+...+|+|||++||..+. +   .+.+|++++++......+  .+......|++++..+++....+    .+..|
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~g~~~~~~~SpDG~~la~~~~~~----g~~~I  269 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--EGLNGAPAWSPDGSKLAFVLSKD----GNPEI  269 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--CCCcCCeEECCCCCEEEEEEccC----CCceE
Confidence            34457889999999999887653 2   266788887754332222  33344567888888887655322    23468


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      .+||+.+++...............|+++  .++...+    ..|.++|+.+++. ..+...........+++  |+..++
T Consensus       270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~  346 (430)
T PRK00178        270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLV  346 (430)
T ss_pred             EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccceEECC--CCCEEE
Confidence            8999988765433333334455677764  4555443    3688888876664 33322222222334554  556777


Q ss_pred             EecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCC
Q 022387          233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLD  290 (298)
Q Consensus       233 ~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~t  290 (298)
                      +....+|  .|.++++.++....+.. ........|+|||++|+-.+.++  ..|.++++..
T Consensus       347 ~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEEccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            6555555  45668887766554432 22333568999999998877543  2266667643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.99  E-value=2.1e-08  Score=95.42  Aligned_cols=203  Identities=11%  Similarity=0.057  Sum_probs=128.6

Q ss_pred             CcccCCCCCCeEEEEEcCCC--CEEEEEcC-CeEEEEEcCCCce-----EEEEe------eecCCceEEEEEec-CCCEE
Q 022387           78 ESTSSSPPPTLLHISFNQDH--GCFAAGTD-HGFRIYNCDPFRE-----IFRRD------FERGGGIGVVEMLF-RCNIL  142 (298)
Q Consensus        78 ~~~~~~~~~~V~~v~fs~dg--~~lasgs~-~gi~vw~~~~~~~-----~~~~~------~~~~~~~~~~~~~~-~~~~~  142 (298)
                      ......|..+|+.+.|-++-  .-|++++- ++|..|+++-...     +....      +.....+..+.+.. +++.+
T Consensus       284 s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F  363 (555)
T KOG1587|consen  284 SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF  363 (555)
T ss_pred             ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence            34457888999999998643  23555554 5588998754321     00000      00012233444433 34455


Q ss_pred             EEEeCCCCCCCCCCeEEEE---eCCCCc------EEEEeecCCceEEEEEeC---CeEEEEECCeEEEEEcC-CCeEEEE
Q 022387          143 ALVGGGPDPQYPLNKVMIW---DDHQSR------CIGELSFRSEVRSVKLRR---DRIIVVLEQKIFVYNFA-DLKLLHQ  209 (298)
Q Consensus       143 ~~~~~~~~~~~~d~~v~iW---D~~~~~------~~~~~~~~~~v~~v~~~~---~~l~v~~~~~I~iwd~~-~~~~i~~  209 (298)
                      ++++       ..|.|..=   +.+...      ......+.+.|.++.+++   ..++++++-+|+||.-. ...++..
T Consensus       364 iVGT-------e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~  436 (555)
T KOG1587|consen  364 IVGT-------EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS  436 (555)
T ss_pred             EEEc-------CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence            5544       44666552   222222      111233456888888665   56777778999999976 6666666


Q ss_pred             EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc---ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      +..+...+..++.|+  -...+.+++..||.+.+||+...   ++.+.+.+..+.+.+.|+++|+.||.|...|+ |+++
T Consensus       437 ~~~~~~~v~~vaWSp--trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~  513 (555)
T KOG1587|consen  437 LDSSPDYVTDVAWSP--TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THIL  513 (555)
T ss_pred             hhhccceeeeeEEcC--cCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEE
Confidence            665544444445444  33444445899999999998754   45566667788899999999999999999999 9999


Q ss_pred             ECCC
Q 022387          287 NTLD  290 (298)
Q Consensus       287 d~~t  290 (298)
                      ++..
T Consensus       514 ~l~~  517 (555)
T KOG1587|consen  514 KLSE  517 (555)
T ss_pred             EcCc
Confidence            9864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.99  E-value=3.1e-08  Score=91.78  Aligned_cols=148  Identities=13%  Similarity=0.156  Sum_probs=110.4

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC----CceEEEEEe------C--------------C--eEEEEE
Q 022387          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR----SEVRSVKLR------R--------------D--RIIVVL  192 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~----~~v~~v~~~------~--------------~--~l~v~~  192 (298)
                      ..++|++.       .||.+|+||..+++..+++...    +...+..|.      +              +  .++.++
T Consensus         5 ~~~~A~~~-------~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    5 LDYFALST-------GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             hheEeecC-------CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            34566666       5699999999999888776532    233333331      1              1  222233


Q ss_pred             -CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCC
Q 022387          193 -EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG  270 (298)
Q Consensus       193 -~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg  270 (298)
                       .|.|.+|++..+++-.++.+..++..+.++....+ ...+.|++.|+.+.+|+.+.+... .+++-...+.+++++|||
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence             48999999999999889887666666666654433 333346899999999999988765 678888899999999999


Q ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          271 QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.|+++|.  . |++||+++++++.+|
T Consensus       157 ~~l~~as~--~-ik~~~~~~kevv~~f  180 (541)
T KOG4547|consen  157 KILLTASR--Q-IKVLDIETKEVVITF  180 (541)
T ss_pred             CEEEeccc--e-EEEEEccCceEEEEe
Confidence            99999974  3 999999999999887

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.1e-07  Score=89.35  Aligned_cols=176  Identities=12%  Similarity=0.091  Sum_probs=109.1

Q ss_pred             EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe
Q 022387          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (298)
Q Consensus       108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~  187 (298)
                      +.+||.+.........  +...+....|+++++.+++++...    ....|.+||+.+++......+.....+..|+++.
T Consensus       186 l~i~D~~g~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        186 LQVADSDGYNPQTILR--SAEPILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEECCCCCCceEeec--CCCccccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            5567765443322222  244566677888898888876332    2357999999887764443444455567888753


Q ss_pred             --EEEEE--C--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeeccccc
Q 022387          188 --IIVVL--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDS  259 (298)
Q Consensus       188 --l~v~~--~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~~  259 (298)
                        +++..  +  ..|++||+.+++. ..+..+.......++  ++|+..++++...+|.  |.+++...+....+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence              44332  2  3799999987764 344433332333444  4556777765555665  4445655555544443444


Q ss_pred             ceeEEEECCCCCEEEEEeCCC---CEEEEEECCCCcE
Q 022387          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTL  293 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~Dg---t~IrIWd~~tg~~  293 (298)
                      ....++|||||++||..+.++   . |.+||+.+++.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~  372 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSV  372 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCe
Confidence            566789999999998875443   5 89999988764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=2.4e-07  Score=87.45  Aligned_cols=200  Identities=13%  Similarity=0.104  Sum_probs=116.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-Ce---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      +..+.+..|+|||++|+..+. ++   +.+|++.+++......+  .+......|++++..++++...+    ....|.+
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~  290 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKD----GQPEIYV  290 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCC----CCeEEEE
Confidence            446778999999999887653 32   56778877654322222  23334567888998888765322    1235888


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +|+.+++...............|+++  .++...+    ..|.++|+.+++. ..+..........++++  |+..++++
T Consensus       291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~Sp--DG~~l~~~  367 (448)
T PRK04792        291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGGSITP--DGRSMIMV  367 (448)
T ss_pred             EECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCeeECC--CCCEEEEE
Confidence            89988765433333334556677765  4444443    3677778876654 23322222222334554  55677665


Q ss_pred             cCCCceEEE--EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC-C-EEEEEECCCCcEEE
Q 022387          235 GLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQ  295 (298)
Q Consensus       235 Gs~dg~v~i--~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg-t-~IrIWd~~tg~~l~  295 (298)
                      +..++...|  ++..++....+.... ......|+|||++|+-.+.++ . .+.+++. +|+..+
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~  430 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKA  430 (448)
T ss_pred             EecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence            665665555  566666555444321 223458999999888766543 2 2666676 454443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.97  E-value=9.6e-07  Score=81.11  Aligned_cols=189  Identities=14%  Similarity=0.164  Sum_probs=119.0

Q ss_pred             CEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCce-EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387           98 GCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (298)
Q Consensus        98 ~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (298)
                      ++++ +-.+ +.+.|.|.++.+.+.+...  .+.. ..+.+..+++++.+++       .|+.|.++|+.+++.+.++..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~-------rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVAN-------RDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEE-------TTSEEEEEETTSSSEEEEEE-
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEc-------CCCeEEEEECCcccEEEEEec
Confidence            3443 3444 5688999999887766663  3444 3345567788888877       579999999999999999998


Q ss_pred             CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCc-----ceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387          175 RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (298)
Q Consensus       175 ~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~v~i~~  245 (298)
                      ......++++++  .++++.  .+.+.++|.++.++++++.....+.     ...++-..+....++++--..+.|.+-|
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            888888888764  555554  5899999999999999987653222     2233322222333333345567887777


Q ss_pred             cCCc-ceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          246 YASK-RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       246 ~~~~-~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      +... .+. .............|+|+|+||..+......|-++|.++++++.
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            6543 222 2333445678899999999887764433349999999998764

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.96  E-value=1.5e-09  Score=65.94  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=34.8

Q ss_pred             ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       250 ~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .+.++.+|.+.|++|+|+|++.+|||+|.|++ |+|||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            35689999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=7.1e-09  Score=95.44  Aligned_cols=208  Identities=12%  Similarity=0.151  Sum_probs=133.2

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC--------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF--------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..+.|...|+.++|.+....|++++.++ +++|+++..        +.++++.. |.+.|.++++...+..+..++    
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg----  363 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGG----  363 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeec----
Confidence            4467788999999999999999999977 679998321        22333332 889999999988888777776    


Q ss_pred             CCCCCCeEEEEeCCC------Cc---EE-EEe-ecCCceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC
Q 022387          151 PQYPLNKVMIWDDHQ------SR---CI-GEL-SFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~------~~---~~-~~~-~~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                         .||+|+.|++-.      ..   .+ ..+ .+...|+.+.++.  ++++.|. +++++.|+.....+ .+|......
T Consensus       364 ---~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~  439 (577)
T KOG0642|consen  364 ---IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH  439 (577)
T ss_pred             ---cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc
Confidence               789999995421      11   11 122 3345787888874  5666664 79999999876665 455443322


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecc-------cccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~-------H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ..-..+..-.....++++....|.-.++++.... +..+..       -...++-|.++|.+.+..++.+|+. ||++|.
T Consensus       440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn  518 (577)
T KOG0642|consen  440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDN  518 (577)
T ss_pred             CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccc
Confidence            2222222211111111112222232334443322 222211       1234788899999999999999999 999999


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      .+|+.+++.
T Consensus       519 ~~~~~l~s~  527 (577)
T KOG0642|consen  519 KTGKILHSM  527 (577)
T ss_pred             cccccchhe
Confidence            999988753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=1.7e-06  Score=78.33  Aligned_cols=198  Identities=15%  Similarity=0.139  Sum_probs=119.5

Q ss_pred             EcCCCCEEEEEcC-----------CeEEEEEcCCCceEEEEeeec------CCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        93 fs~dg~~lasgs~-----------~gi~vw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      +||||+.|+++.-           +.+.|||..+.+.+....+..      ........++.++..+++..-.     .+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PS  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CC
Confidence            9999997665533           668899999998876666410      1112256677788777766522     36


Q ss_pred             CeEEEEeCCCCcEEEEeecCCc--------------------------------eEEEE-Ee----------------CC
Q 022387          156 NKVMIWDDHQSRCIGELSFRSE--------------------------------VRSVK-LR----------------RD  186 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~--------------------------------v~~v~-~~----------------~~  186 (298)
                      +.|.+.|+.+++.+.++.....                                +.... |+                ..
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence            8899999998887776542210                                00000 11                11


Q ss_pred             eEEEEECCeEEEEEcCC-----CeEEEEEecc-----CCCcc--eEEEEeCCCCeEEEEecC-------CCceEEEEEcC
Q 022387          187 RIIVVLEQKIFVYNFAD-----LKLLHQIETI-----ANPKG--LCAVSQGVGSLVLVCPGL-------QKGQVRVEHYA  247 (298)
Q Consensus       187 ~l~v~~~~~I~iwd~~~-----~~~i~~~~~~-----~~~~~--~~~~s~~~d~~~la~sGs-------~dg~v~i~~~~  247 (298)
                      .+++...|+|.+.|+..     .+.+..+...     -.|.+  .+++++++...+++.-+.       ..+.|.+.|..
T Consensus       208 ~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~  287 (352)
T TIGR02658       208 LVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK  287 (352)
T ss_pred             EEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence            33444457788888532     2222222111     12222  356655543333321111       12478888887


Q ss_pred             CcceE-eecccccceeEEEECCCCC-EEEEEe-CCCCEEEEEECCCCcEEEec
Q 022387          248 SKRTK-FIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       248 ~~~~~-~~~~H~~~V~~l~fspdg~-~lAt~S-~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.+.. .+. -...+..|+|+|||+ +|.+.. .++. |.|.|..+++.+++.
T Consensus       288 t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~~t~k~i~~i  338 (352)
T TIGR02658       288 TGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT-LYIFDAETGKELSSV  338 (352)
T ss_pred             CCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc-EEEEECcCCeEEeee
Confidence            76654 332 234899999999999 777665 5777 999999999998864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.94  E-value=1.4e-09  Score=104.12  Aligned_cols=199  Identities=15%  Similarity=0.213  Sum_probs=136.9

Q ss_pred             cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..-++|.+.|+.++.+.+..++|+++.|. |++|.+.....+..+.. |.+.+..+++++..      +.+     .||+
T Consensus       226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg-htgavtaiafsP~~------sss-----~dgt  293 (1113)
T KOG0644|consen  226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG-HTGAVTAIAFSPRA------SSS-----DDGT  293 (1113)
T ss_pred             ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc-cccceeeeccCccc------cCC-----CCCc
Confidence            33478889999999999999999999876 67999988765544433 67777777776544      222     6899


Q ss_pred             EEEEeCCCCc--------------EEEEeec-----------------CCceEEEEEeCCeEEEE--------------E
Q 022387          158 VMIWDDHQSR--------------CIGELSF-----------------RSEVRSVKLRRDRIIVV--------------L  192 (298)
Q Consensus       158 v~iWD~~~~~--------------~~~~~~~-----------------~~~v~~v~~~~~~l~v~--------------~  192 (298)
                      +++||.+-..              .+..+.+                 ....-++.++...+..+              .
T Consensus       294 ~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  294 CRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             eEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence            9999987110              0000000                 00111112222222211              1


Q ss_pred             CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-ceEe-ecccccceeEEEECCCC
Q 022387          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKF-IMAHDSRIACFALTQDG  270 (298)
Q Consensus       193 ~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-~~~~-~~~H~~~V~~l~fspdg  270 (298)
                      +-.+++|++.++.+.+.+.+|.....++.+++-  +..++.+...||...|||...+ +++. +.+| ..+...+||+||
T Consensus       374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDG  450 (1113)
T ss_pred             eeEeeeeecccchhhhhhcccccceeeeeecCC--CcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCC
Confidence            247889999999999999999888888887764  4777778899999999998654 3443 3454 566677999999


Q ss_pred             CEEEEEeCCCCEEEEEECCCCcE
Q 022387          271 QLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      +.++..-.-|. +.|.....++-
T Consensus       451 ts~~lsd~hgq-l~i~g~gqs~s  472 (1113)
T KOG0644|consen  451 TSIALSDDHGQ-LYILGTGQSKS  472 (1113)
T ss_pred             ceEecCCCCCc-eEEeccCCCcc
Confidence            99998877777 99988766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.93  E-value=4.5e-06  Score=76.11  Aligned_cols=203  Identities=15%  Similarity=0.168  Sum_probs=126.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEE--eee-----------cCCceEEEEEecCCCEEEEEeCCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRR--DFE-----------RGGGIGVVEMLFRCNILALVGGGPD  150 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..-..++++||+++|+++.-  +.+.+++++..+.+...  ...           .......+.+.++++.++++.-|. 
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-  165 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-  165 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-
Confidence            35568999999999998864  44779999875432222  110           123455677788888887776542 


Q ss_pred             CCCCCCeEEEEeCCCCc--EEE--Eee--cCCceEEEEEeCC--eEEEEEC--CeEEEEEcC--CC--eEEEEEeccC-C
Q 022387          151 PQYPLNKVMIWDDHQSR--CIG--ELS--FRSEVRSVKLRRD--RIIVVLE--QKIFVYNFA--DL--KLLHQIETIA-N  215 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~--~~~--~~~--~~~~v~~v~~~~~--~l~v~~~--~~I~iwd~~--~~--~~i~~~~~~~-~  215 (298)
                           ..|.+|++....  ...  .+.  .......+.|+++  .+.+..+  ++|.+|++.  ++  +.+.++.... .
T Consensus       166 -----D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  166 -----DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             -----TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             -----CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence                 569999987654  322  222  2345677888876  5666653  799999987  33  3344443321 1


Q ss_pred             C---cceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceE---eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          216 P---KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       216 ~---~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~---~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .   .....+..++|+.+|.++......|.+++++  ++.+.   .+.......+.++|+|+|++|+.+..+...|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence            1   1233444455557776667778899998883  23333   33333345899999999999999886665599997


Q ss_pred             C--CCCcEE
Q 022387          288 T--LDGTLL  294 (298)
Q Consensus       288 ~--~tg~~l  294 (298)
                      +  ++|++.
T Consensus       321 ~d~~tG~l~  329 (345)
T PF10282_consen  321 IDPDTGKLT  329 (345)
T ss_dssp             EETTTTEEE
T ss_pred             EeCCCCcEE
Confidence            6  577654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=3.4e-07  Score=85.93  Aligned_cols=177  Identities=14%  Similarity=0.098  Sum_probs=111.3

Q ss_pred             EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe
Q 022387          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (298)
Q Consensus       108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~  187 (298)
                      +.+||.+.........  +...+....|++++..+++++...    .+..|.+||+.+++......+...+....|+++.
T Consensus       181 l~~~d~dg~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        181 LRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             EEEEcCCCCCCEEeec--CCCceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            5566665443322222  244677788899999888876322    2357999999888654444444555667888763


Q ss_pred             --EEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE--EcCCcceEeeccccc
Q 022387          188 --IIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HYASKRTKFIMAHDS  259 (298)
Q Consensus       188 --l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~--~~~~~~~~~~~~H~~  259 (298)
                        ++...+    ..|.+||+.+++.. .+..+.....  ...+++|+..|+++...+|...||  +...+....+..+..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~--~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNT--EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcC--ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence              444322    26999999877653 3333322233  344555667777655555655564  555555555555555


Q ss_pred             ceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCcE
Q 022387          260 RIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTL  293 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~~  293 (298)
                      .+.+.+|||||++||..+.++  ..|.+||+.+++.
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            677899999999998876543  2288899988864

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=2.5e-08  Score=87.09  Aligned_cols=201  Identities=14%  Similarity=0.222  Sum_probs=117.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce-E--EEEeee-c------------CCceEEEEEecCCC--EEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-I--FRRDFE-R------------GGGIGVVEMLFRCN--ILALVG  146 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~-~--~~~~~~-~------------~~~~~~~~~~~~~~--~~~~~~  146 (298)
                      .-|.+|.|...|.+||+|..+| +.+|.-+.... .  +...+. |            +..+.-+.|...++  .+.+++
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            4789999999999999999877 55774332211 1  111111 2            22344555655443  344545


Q ss_pred             CCCCCCCCCCeEEEEeCCCCcEEE---------------E--------------------ee--cCCceEEEEEeCCeE-
Q 022387          147 GGPDPQYPLNKVMIWDDHQSRCIG---------------E--------------------LS--FRSEVRSVKLRRDRI-  188 (298)
Q Consensus       147 ~~~~~~~~d~~v~iWD~~~~~~~~---------------~--------------------~~--~~~~v~~v~~~~~~l-  188 (298)
                             .|++|++|.++......               .                    +.  |.-.|.++.++.+.- 
T Consensus       106 -------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  106 -------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             -------CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence                   68999999875421110               0                    00  112466677766533 


Q ss_pred             -EEEECCeEEEEEcCC-CeEE--EEEeccC-----CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-----E--
Q 022387          189 -IVVLEQKIFVYNFAD-LKLL--HQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----K--  252 (298)
Q Consensus       189 -~v~~~~~I~iwd~~~-~~~i--~~~~~~~-----~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-----~--  252 (298)
                       +.+-+=.|.+|++.- .+..  ..++.+.     ..+.+.-|++.. +.++++ .+..|.|++-|+....+     +  
T Consensus       179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~Y-SSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVY-SSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEE-ecCCCcEEEeechhhhhhcchhhhh
Confidence             333345899999842 2222  2222221     123344555543 456666 68899999988763211     1  


Q ss_pred             ----------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC-CCCcEEEec
Q 022387          253 ----------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQEG  297 (298)
Q Consensus       253 ----------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~-~tg~~l~~~  297 (298)
                                -|..--+.|..+.|+++|+|++|-+. -+ |+|||+ ...+.+.+|
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETY  310 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEE
Confidence                      12222357899999999999999853 34 999999 455555554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=5.3e-08  Score=90.06  Aligned_cols=191  Identities=15%  Similarity=0.184  Sum_probs=130.3

Q ss_pred             CeEEEEEc-CCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs-~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      .-+.++++ +.-.++..|+..-+.-+|++.++.+.-... ..+.+.++.+.....+++..+       .+|.|..||.+.
T Consensus       135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt-------~~g~VEfwDpR~  206 (703)
T KOG2321|consen  135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGT-------EDGVVEFWDPRD  206 (703)
T ss_pred             CCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecc-------cCceEEEecchh
Confidence            44556666 455677777776666778888876554443 246677777765555554444       579999999998


Q ss_pred             CcEEEEeecCC------------ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCC--CcceEEEEeCCCC
Q 022387          166 SRCIGELSFRS------------EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGS  228 (298)
Q Consensus       166 ~~~~~~~~~~~------------~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~--~~~~~~~s~~~d~  228 (298)
                      ...+..+....            .|+++.|..+.+-++.   .|.|.|||++..+++.. +.|..  ++..+.+....++
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCC
Confidence            77666655433            3899999887666553   48999999998887654 33443  3334444334334


Q ss_pred             eEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..++  ......++||+-.++.....-..+..++.+|+-|++-+|.++-++.. |..+=+.
T Consensus       286 ~~v~--S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~-m~~yyiP  343 (703)
T KOG2321|consen  286 NKVV--SMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK-MHTYYIP  343 (703)
T ss_pred             ceEE--ecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc-ceeEEcc
Confidence            5555  35666889999887765544445667999999999999999988776 6555433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=4.8e-07  Score=84.90  Aligned_cols=159  Identities=16%  Similarity=0.084  Sum_probs=99.6

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEE--CCe--EEEEE
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQK--IFVYN  200 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~--I~iwd  200 (298)
                      ...+....|+++++.+++++...    ....|.+||+.+++......+...+....|+++.  +++..  ++.  |.++|
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            45666778899999888877432    2356999999988765443455566678888763  44433  344  44555


Q ss_pred             cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                      +..++ ++.+..+........++  +|+..|++.+..+|...||.+.  .+....+..+.......+|||||++||..+.
T Consensus       271 ~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        271 ADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             CCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            54443 34444333333334444  5557776655556677776553  3333333223334556899999999998776


Q ss_pred             CC---CEEEEEECCCCcE
Q 022387          279 KG---TLVRIFNTLDGTL  293 (298)
Q Consensus       279 Dg---t~IrIWd~~tg~~  293 (298)
                      ++   . |.+||+.+++.
T Consensus       348 ~~g~~~-I~v~d~~~g~~  364 (427)
T PRK02889        348 VGGAFK-LYVQDLATGQV  364 (427)
T ss_pred             cCCcEE-EEEEECCCCCe
Confidence            54   5 99999988764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=6.2e-07  Score=84.36  Aligned_cols=176  Identities=11%  Similarity=0.077  Sum_probs=111.9

Q ss_pred             EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe
Q 022387          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (298)
Q Consensus       108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~  187 (298)
                      +.++|.+.........  +...+....|++++..+++++...    .+..|.+||+.+++......+...+....|+++.
T Consensus       184 l~~~d~dg~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        184 LAIMDQDGANVRYLTD--GSSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEECCCCCCcEEEec--CCCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            4455554433221111  356777888999999888876432    2478999999988764433445566777888754


Q ss_pred             --EEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc--eEEEEEcCCcceEeeccccc
Q 022387          188 --IIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS  259 (298)
Q Consensus       188 --l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~  259 (298)
                        +++..+    ..|.+||+.+++. ..+..+........+++  |+..+++....+|  .|.+++...+....+..+..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~  334 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG  334 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence              443332    3688889877654 44544433333445554  5566666444455  56667777766665555566


Q ss_pred             ceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCc
Q 022387          260 RIACFALTQDGQLLATSSTKG--TLVRIFNTLDGT  292 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~  292 (298)
                      .+...+|||||++||..+.++  ..|.+||+.++.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            678899999999999876543  237888876543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.85  E-value=1.1e-06  Score=81.97  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=105.5

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEE
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYN  200 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd  200 (298)
                      ...+....+++++..++++....    ....|++||+.+++......+...+.+..|+++  .+++..+    ..|++||
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            33466667888898888876332    236799999998866544445556667788875  3544432    3699999


Q ss_pred             cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                      +.+++. ..+..+........++  +|+..|++.....|  .|.+++........+..+...+..++|+|||++|+.++.
T Consensus       265 ~~~~~~-~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       265 LDGKQL-TRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CCCCCE-EECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence            977654 3343333323334454  45566665444445  455577766665556556677888999999999999988


Q ss_pred             CC---CEEEEEECCCCcE
Q 022387          279 KG---TLVRIFNTLDGTL  293 (298)
Q Consensus       279 Dg---t~IrIWd~~tg~~  293 (298)
                      ++   . |.+||+.++..
T Consensus       342 ~~~~~~-i~~~d~~~~~~  358 (417)
T TIGR02800       342 EGGGFN-IAVMDLDGGGE  358 (417)
T ss_pred             cCCceE-EEEEeCCCCCe
Confidence            76   6 88999887643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.82  E-value=4.2e-08  Score=91.73  Aligned_cols=189  Identities=14%  Similarity=0.186  Sum_probs=122.4

Q ss_pred             EEcCCCCEEEE---EcCCeEEEEEcCCCceEEE---EeeecCCceEEEEE-ecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           92 SFNQDHGCFAA---GTDHGFRIYNCDPFREIFR---RDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        92 ~fs~dg~~las---gs~~gi~vw~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .|+.+.+++|+   |+.+.|.||++...+.+--   -.+.-+..+.-+.| .|+...+|+++       +|+.|+||-+.
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~  658 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLT  658 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEec
Confidence            35556677775   3334467999854332110   01101222333344 36778889988       78999999876


Q ss_pred             CCc-------EEEEeecC-CceEEEEEeC---CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          165 QSR-------CIGELSFR-SEVRSVKLRR---DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       165 ~~~-------~~~~~~~~-~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      .+.       ....+..+ ..|+.+.||+   +.++++. +-+|++||+.+++...++.+|...+.  .|+++++|..+|
T Consensus       659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf--~~AWSpdGr~~A  736 (1012)
T KOG1445|consen  659 ANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF--GIAWSPDGRRIA  736 (1012)
T ss_pred             cCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee--EEEECCCCccee
Confidence            532       22334444 5899999997   5566654 67999999999999889998877654  455555668888


Q ss_pred             EecCCCceEEEEEcCCcceEeec--cc-ccceeEEEECCCCCEEEEEeCCCC---EEEEEECCC
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIM--AH-DSRIACFALTQDGQLLATSSTKGT---LVRIFNTLD  290 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~--~H-~~~V~~l~fspdg~~lAt~S~Dgt---~IrIWd~~t  290 (298)
                      . -..||+|++|.-...+.....  +- ...-..|.|--||++++..+.|..   +|.+||.++
T Consensus       737 t-VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  737 T-VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             e-eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            4 788999999987655433222  11 123345677789999998888762   256666543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=3.9e-07  Score=80.29  Aligned_cols=192  Identities=17%  Similarity=0.172  Sum_probs=119.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCE-EEEEeCCCCCCCCCCeEEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .+-.++.++|+|.-..+|++.. |.||+|+..... ....+......+.+++|.+.+.. ++++.        .+-|.||
T Consensus        97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgC--------r~gIciW  167 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGC--------RAGICIW  167 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeee--------cceeEEE
Confidence            3447899999998777888876 778999876522 22222112567889999876544 44444        3559999


Q ss_pred             eCCCC----cEE--------EEee--cCCceEEEEEeCCeEEEEE----CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387          162 DDHQS----RCI--------GELS--FRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       162 D~~~~----~~~--------~~~~--~~~~v~~v~~~~~~l~v~~----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s  223 (298)
                      .....    ..+        .-++  .+..|.++.|+++....++    +..|+|||..++..+.-..  ....+..-+-
T Consensus       168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLk  245 (445)
T KOG2139|consen  168 SDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLK  245 (445)
T ss_pred             EcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEE
Confidence            86431    111        1122  3457999999988655543    4699999998776544332  2223333334


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ++||+.+|.+ .+-|+..++|.....-.+ ...--.+.|..-+|+|+|++|.-++...  =+|+.+.
T Consensus       246 wSPdgd~lfa-At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~  309 (445)
T KOG2139|consen  246 WSPDGDVLFA-ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLT  309 (445)
T ss_pred             EcCCCCEEEE-ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEe
Confidence            4445555553 699999999965433221 1222334899999999998776665433  3466543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.6e-06  Score=80.28  Aligned_cols=204  Identities=16%  Similarity=0.221  Sum_probs=129.2

Q ss_pred             CCCCCeEEEEEcCCCC--EEEE-----EcC-CeEEEEEcCC---CceEEEEeeecCCceEEEEEecCCCE-EEEEeCCCC
Q 022387           83 SPPPTLLHISFNQDHG--CFAA-----GTD-HGFRIYNCDP---FREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD  150 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~--~las-----gs~-~gi~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  150 (298)
                      .|...|+...+||-+.  ++|+     ++. ..+|||-+.-   ...+..+.| -..+...+.|...+.. |++++..-|
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-Fkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-FKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-cccceeEEEeccCCceEEEEEEEeec
Confidence            3456889999998643  5664     222 4488997641   122222222 1233344445444443 444432211


Q ss_pred             ----CCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387          151 ----PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCA  221 (298)
Q Consensus       151 ----~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~  221 (298)
                          +=+...++.+.+.+...+...+.-.++|.++.|++..  ++++-.   -++-|||++ ++++..+  ...+...+.
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~  318 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF  318 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence                1122356888888855666666667899999998754  777655   589999986 4554444  456777888


Q ss_pred             EEeCCCCeEEEEecCC--CceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeC------CCCEEEEEECCCCc
Q 022387          222 VSQGVGSLVLVCPGLQ--KGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGT  292 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~--dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~------Dgt~IrIWd~~tg~  292 (298)
                      |++++  .+++++|-.  .|.+.|||..+.+. ..+.+-  .-+-++|+|||.+|.|+..      |.. ||||++ +|.
T Consensus       319 fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhy-tG~  392 (566)
T KOG2315|consen  319 FNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHY-TGS  392 (566)
T ss_pred             ECCCC--CEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCC-eEEEEe-cCc
Confidence            88877  555555544  68999999987543 345543  3455689999999999853      678 999995 466


Q ss_pred             EEEe
Q 022387          293 LLQE  296 (298)
Q Consensus       293 ~l~~  296 (298)
                      .+++
T Consensus       393 ~l~~  396 (566)
T KOG2315|consen  393 LLHE  396 (566)
T ss_pred             eeeh
Confidence            6655

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=4.5e-06  Score=78.32  Aligned_cols=201  Identities=10%  Similarity=0.034  Sum_probs=116.1

Q ss_pred             CCeEEEEEcCCCCE--E-EEEcCCe---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGC--F-AAGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~--l-asgs~~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+..=+|||||+.  + ++...++   |.+.+++.++......+  .+......|++++..++++.....  ..+-.+.
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~  260 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQ  260 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCC--CcceeEE
Confidence            34566799999975  2 2444333   44557766554333333  344455678899998888763221  0233455


Q ss_pred             EEeCCCC---cEEEEeecC-CceEEEEEeCC--eEEEEEC--C--eEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCC
Q 022387          160 IWDDHQS---RCIGELSFR-SEVRSVKLRRD--RIIVVLE--Q--KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       160 iWD~~~~---~~~~~~~~~-~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      +||+..+   ......... .......|+++  .++...+  +  .|.++++.. +...+.+..+........+  ++|+
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w--SPDG  338 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW--SPDG  338 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE--CCCC
Confidence            6787653   222222222 23355678876  3454443  4  344555532 2233344333333334444  5555


Q ss_pred             eEEEEecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC---CCCEEEEEECCCCcE
Q 022387          229 LVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTL  293 (298)
Q Consensus       229 ~~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~---Dgt~IrIWd~~tg~~  293 (298)
                      ..|++.+..+|  .|.+|+..++....+......+....|+|||++|+-.+.   ... |.+||+.+++.
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~  407 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKT  407 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCE
Confidence            77776555444  677799888777666555556788999999998875433   234 88899988765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.78  E-value=5.2e-08  Score=100.00  Aligned_cols=189  Identities=12%  Similarity=0.198  Sum_probs=126.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      -..|+++.=+|..-+.++|+.+| +++|....++.+..........+.-+.++..++.+.++.       .||.+-+|..
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d-------~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD-------GDGDLSLWQA 2280 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec-------cCCceeeccc
Confidence            35788888889888888998877 779999877766655531123333444566778777776       4688999998


Q ss_pred             CCCcEEEEeec-CCceEEEEEeCCeEEEEE----CCeEEEEEcC---CCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          164 HQSRCIGELSF-RSEVRSVKLRRDRIIVVL----EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       164 ~~~~~~~~~~~-~~~v~~v~~~~~~l~v~~----~~~I~iwd~~---~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      .... ....+. +.....+.|-...++.++    ++.+.+||..   ..-+++  ..|.....++++.|  ..++|+ +|
T Consensus      2281 ~pk~-~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P--~~qlli-sg 2354 (2439)
T KOG1064|consen 2281 SPKP-YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP--KHQLLI-SG 2354 (2439)
T ss_pred             CCcc-eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC--cceEEE-ec
Confidence            7332 222222 223333444444444433    2589999973   233444  44555455555554  557777 69


Q ss_pred             CCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.+|.|++||....++. ++++         +. ...+|++|+..|. ||||++..-.++++|
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcC
Confidence            99999999999877643 4443         44 5689999999999 999999987777664

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.72  E-value=2.6e-07  Score=82.16  Aligned_cols=83  Identities=23%  Similarity=0.310  Sum_probs=62.2

Q ss_pred             EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC-CcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +-+|-....-+++++|+  +++. ++..|+.|+|-.+. .-.+. -+.||+.-|..|+.-++ +.|++||-|++ +|+||
T Consensus       147 ~lGhvSml~dVavS~D~--~~Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd  221 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDD--QFII-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWD  221 (390)
T ss_pred             hhhhhhhhheeeecCCC--CEEE-EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEe
Confidence            34455555556666665  7776 48999999994433 22333 45689999999999775 45899999999 99999


Q ss_pred             CCCCcEEEec
Q 022387          288 TLDGTLLQEG  297 (298)
Q Consensus       288 ~~tg~~l~~~  297 (298)
                      +++|++++++
T Consensus       222 ~~sgk~L~t~  231 (390)
T KOG3914|consen  222 ITSGKLLDTC  231 (390)
T ss_pred             cccCCccccc
Confidence            9999999875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.9e-06  Score=80.05  Aligned_cols=183  Identities=15%  Similarity=0.161  Sum_probs=123.8

Q ss_pred             CCCCEEEEEcCCe-EEEEEcCCCceEEEE--eeecCCceEEEEEe--------------------cCCCEEEEEeCCCCC
Q 022387           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRR--DFERGGGIGVVEML--------------------FRCNILALVGGGPDP  151 (298)
Q Consensus        95 ~dg~~lasgs~~g-i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~  151 (298)
                      +-+.|+|....+| +|||+....+.....  ..+-.+......|.                    .+...+++..     
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt-----   77 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT-----   77 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec-----
Confidence            4467889888777 789998776542211  11012222222221                    0112223333     


Q ss_pred             CCCCCeEEEEeCCCCcEEEEee---cCCceEEEEEeCC--eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC
Q 022387          152 QYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~--~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~  225 (298)
                        ..|.|-++++..++....+.   +.+.|.++.++.+  -+..+ .+..+..|+....+.++..+.....+..+++++|
T Consensus        78 --~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   78 --PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             --CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence              34789999999999888776   3457888777654  23333 3579999999999999998876666677777776


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCC-----CCEEEEE-eCCCCEEEEEECCC
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQD-----GQLLATS-STKGTLVRIFNTLD  290 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspd-----g~~lAt~-S~Dgt~IrIWd~~t  290 (298)
                        +.++++   ..+.|.+|+.+++++ .+|.+|.++|++++|-.+     |.+|.++ ..+.. |-+|-+..
T Consensus       156 --~~~l~~---as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~  221 (541)
T KOG4547|consen  156 --GKILLT---ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK  221 (541)
T ss_pred             --CCEEEe---ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence              467763   337999999998875 489999999999999877     6666655 44555 88887665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=3.9e-07  Score=80.25  Aligned_cols=153  Identities=12%  Similarity=0.154  Sum_probs=108.1

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC--CceEEEEEeC---CeEEEEECCeEEEEEc
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRR---DRIIVVLEQKIFVYNF  201 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~---~~l~v~~~~~I~iwd~  201 (298)
                      +-.+..+.|..+...+++++       .|-.|+++|... .+...++..  ..|.+++|.|   ..++++....|.||..
T Consensus        98 ~~dlr~~aWhqH~~~fava~-------nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~  169 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVAT-------NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSD  169 (445)
T ss_pred             hcceeeEeechhhhhhhhhc-------cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence            44566777766555566655       678899999877 333444443  3799999865   5788888899999987


Q ss_pred             C-CC---eEEEEEe-------ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeec-ccccceeEEEECCC
Q 022387          202 A-DL---KLLHQIE-------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQD  269 (298)
Q Consensus       202 ~-~~---~~i~~~~-------~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~-~H~~~V~~l~fspd  269 (298)
                      . +.   ..++-..       .+.+...+..+.+.+|+..++.+.-.+..|.|||..++...-+. .--+.++-+.||||
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd  249 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD  249 (445)
T ss_pred             CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence            3 11   1111111       11222445666677777888876777889999999887655444 44567999999999


Q ss_pred             CCEEEEEeCCCCEEEEEEC
Q 022387          270 GQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~  288 (298)
                      |.+|..+.-|+. .+||+.
T Consensus       250 gd~lfaAt~dav-frlw~e  267 (445)
T KOG2139|consen  250 GDVLFAATCDAV-FRLWQE  267 (445)
T ss_pred             CCEEEEecccce-eeeehh
Confidence            999999999999 999953

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.67  E-value=2.7e-05  Score=66.97  Aligned_cols=198  Identities=15%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             EEEcCCCCEEEEEcCCeEEEEEcCC-CceE-EEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           91 ISFNQDHGCFAAGTDHGFRIYNCDP-FREI-FRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        91 v~fs~dg~~lasgs~~gi~vw~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ++.+.||++||.--+..+.|=.... ..-+ ......  ....-+-++|++++..+|.+.       ..|+|+++|+...
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-------S~G~i~vfdl~g~   75 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-------STGTIRVFDLMGS   75 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-------CCCeEEEEecccc
Confidence            5678899999988777665553321 1111 111111  233446788899999999988       4599999998653


Q ss_pred             cEEEEee--------cCCceEEEEEeC---------CeEEEEECCeEEEEEc-----CCCeEEEEEeccC-CCcceEEEE
Q 022387          167 RCIGELS--------FRSEVRSVKLRR---------DRIIVVLEQKIFVYNF-----ADLKLLHQIETIA-NPKGLCAVS  223 (298)
Q Consensus       167 ~~~~~~~--------~~~~v~~v~~~~---------~~l~v~~~~~I~iwd~-----~~~~~i~~~~~~~-~~~~~~~~s  223 (298)
                      ... .+.        ....|..+.|-.         ..+++.-.|.++-|-+     ...+..++|.-.. .+.++.++.
T Consensus        76 ~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   76 ELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             eeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            322 221        122344454422         2333334677776665     2344455554322 356777777


Q ss_pred             eCCCCeEEEEecCCCce----------EEEEEcCC-----------------c-------ceEe---e---cccccceeE
Q 022387          224 QGVGSLVLVCPGLQKGQ----------VRVEHYAS-----------------K-------RTKF---I---MAHDSRIAC  263 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~----------v~i~~~~~-----------------~-------~~~~---~---~~H~~~V~~  263 (298)
                      .++..++|.++|.....          +.-|.+-.                 .       ++..   +   ..-...|..
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            77777777776655332          22233210                 0       0011   1   112456999


Q ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       264 l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |..||||++||+.+.+|. |-||++.+-++.+++
T Consensus       235 mSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSW  267 (282)
T ss_pred             EEECCCCCEEEEEEcCCe-EEEEecCcchhhccc
Confidence            999999999999999999 999999998776653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=2.2e-06  Score=79.40  Aligned_cols=84  Identities=12%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             eEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC----CCCeEEEEeC
Q 022387           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY----PLNKVMIWDD  163 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~v~iWD~  163 (298)
                      =+.+.|||-|+||++=...||.+|--.....+.+..   ...+..+.+++.-.+|++-+...+..-    ....+.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc---CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            367999999999999999999999766655543333   346788888888888877654322110    2367999999


Q ss_pred             CCCcEEEEeec
Q 022387          164 HQSRCIGELSF  174 (298)
Q Consensus       164 ~~~~~~~~~~~  174 (298)
                      .+|...+.+..
T Consensus       290 ~tG~lkrsF~~  300 (698)
T KOG2314|consen  290 ATGLLKRSFPV  300 (698)
T ss_pred             cccchhcceec
Confidence            99987666543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.66  E-value=7.2e-07  Score=82.14  Aligned_cols=112  Identities=14%  Similarity=0.204  Sum_probs=86.6

Q ss_pred             ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-
Q 022387          177 EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-  252 (298)
Q Consensus       177 ~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-  252 (298)
                      .|...+|+++  .|+++. |+.+||+|..+++++..++.  .-.+.+++++++|+.+|++ |..|--|.||.+..+++. 
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvt-GGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVT-GGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEe-cCCcceEEEEEeccceEEE
Confidence            5667777765  444444 68999999988887665543  2245677788888899995 999999999999988765 


Q ss_pred             eecccccceeEEEECC------------------------------------------------CCCEEEEEeCCCCEEE
Q 022387          253 FIMAHDSRIACFALTQ------------------------------------------------DGQLLATSSTKGTLVR  284 (298)
Q Consensus       253 ~~~~H~~~V~~l~fsp------------------------------------------------dg~~lAt~S~Dgt~Ir  284 (298)
                      .-.+|++-|+.|+|.|                                                .-..|.+.+.|-. +-
T Consensus       369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq-lc  447 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ-LC  447 (636)
T ss_pred             eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce-EE
Confidence            5679999999999982                                                1137888999988 99


Q ss_pred             EEECCCCc
Q 022387          285 IFNTLDGT  292 (298)
Q Consensus       285 IWd~~tg~  292 (298)
                      +||+..-.
T Consensus       448 LWDlteD~  455 (636)
T KOG2394|consen  448 LWDLTEDV  455 (636)
T ss_pred             EEecchhh
Confidence            99987543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.65  E-value=4.4e-06  Score=71.13  Aligned_cols=196  Identities=12%  Similarity=0.085  Sum_probs=115.3

Q ss_pred             EEEEEcC-----CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCCeEEEE
Q 022387           89 LHISFNQ-----DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        89 ~~v~fs~-----dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+.|-|     .-.+||.|+..| +.+|.+.+.+......-.+..++.++....+ .-.+.+++       .|.++++.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s-------ndht~k~~  143 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS-------NDHTGKTM  143 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc-------CCcceeEE
Confidence            3456665     334789888755 7899998765433332113444444432222 12234444       67888888


Q ss_pred             eCCCCcEEEEeecC-CceEEEEEeC--CeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          162 DDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ++.-+..-..+-.. -.+..+..++  ..++++++ ..|..|.+.+ .+.+..+............+++.....+|+ ++
T Consensus       144 ~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~  222 (344)
T KOG4532|consen  144 VVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VF  222 (344)
T ss_pred             EEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-Ee
Confidence            87654322222221 1255566654  34444554 6899999843 333333222222233444455555678885 99


Q ss_pred             CCceEEEEEcCCcce------EeecccccceeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEE
Q 022387          237 QKGQVRVEHYASKRT------KFIMAHDSRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~------~~~~~H~~~V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .||++.|||+.....      .+-..|+++|+.+.|++-|.   +|.|-. =+. ++|-|+++++..
T Consensus       223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~-~hv~D~R~~~~~  287 (344)
T KOG4532|consen  223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSR-VHVVDTRNYVNH  287 (344)
T ss_pred             cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cce-EEEEEcccCcee
Confidence            999999999875421      23456999999999997653   444443 344 899999998653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.63  E-value=3.2e-08  Score=89.43  Aligned_cols=185  Identities=13%  Similarity=0.122  Sum_probs=133.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ..|+.+.|=.+-.+||++-.+-+.|||-.-.+....++   ...+.-+++.+..-+|+.++       ..|-++.-|+.+
T Consensus       171 Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~---~~~v~rLeFLPyHfLL~~~~-------~~G~L~Y~DVS~  240 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR---HIRVARLEFLPYHFLLVAAS-------EAGFLKYQDVST  240 (545)
T ss_pred             hhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh---cCchhhhcccchhheeeecc-------cCCceEEEeech
Confidence            37888889888899999988878899865544333333   34556666655444455444       458899999999


Q ss_pred             CcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387          166 SRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       166 ~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      |+.+..+... +.+..+..+|-.-++..   .|+|.+|.-...+++..+..|..++..+++.+.+  .++|+ .+.|..|
T Consensus       241 GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G--~YMaT-tG~Dr~~  317 (545)
T KOG1272|consen  241 GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG--RYMAT-TGLDRKV  317 (545)
T ss_pred             hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC--cEEee-cccccce
Confidence            9998887654 46666667775555543   4899999999899999999999999888886654  99996 6778899


Q ss_pred             EEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          242 RVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       242 ~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +|||+..- .+.++.. .-+...++||..|-+-++-|  .. |.||.
T Consensus       318 kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G--~~-v~iw~  360 (545)
T KOG1272|consen  318 KIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYG--DH-VQIWK  360 (545)
T ss_pred             eEeeeccccccceeec-CCCccccccccccceeeecC--Ce-eeeeh
Confidence            99998753 3333332 35688899998775443333  34 89996

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.63  E-value=1.4e-06  Score=75.69  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=108.9

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc---EEEEee-cCCceEEEEEeC--CeEEEEE-CCeEEEE
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR---CIGELS-FRSEVRSVKLRR--DRIIVVL-EQKIFVY  199 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~---~~~~~~-~~~~v~~v~~~~--~~l~v~~-~~~I~iw  199 (298)
                      ...+.+.++..+...+|++.       ..+.|.|+.....+   ..++++ +...|..++|++  +++..+. +..-++|
T Consensus        10 ~~pitchAwn~drt~iAv~~-------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSP-------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             cCceeeeeecCCCceEEecc-------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            46778888887777788877       55789999887765   344554 345888999986  4566665 5688899


Q ss_pred             Ec-CCC--eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-----eecccccceeEEEECCCCC
Q 022387          200 NF-ADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDGQ  271 (298)
Q Consensus       200 d~-~~~--~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-----~~~~H~~~V~~l~fspdg~  271 (298)
                      .. .++  ++.-.+..+...  ...+.+.|....+|+ |+.-..|.||-++.+.-.     +-+.+.+.|++++|+|+.-
T Consensus        83 ~~~~~~~WkptlvLlRiNrA--At~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV  159 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRA--ATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV  159 (361)
T ss_pred             ccCCCCeeccceeEEEeccc--eeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence            88 332  333333333333  345555566688886 999999999777765432     4456788899999999999


Q ss_pred             EEEEEeCCCCEEEEEEC
Q 022387          272 LLATSSTKGTLVRIFNT  288 (298)
Q Consensus       272 ~lAt~S~Dgt~IrIWd~  288 (298)
                      +||.||.|+. .|||..
T Consensus       160 LlaaGs~D~k-~rVfSa  175 (361)
T KOG1523|consen  160 LLAAGSTDGK-CRVFSA  175 (361)
T ss_pred             eecccccCcc-eeEEEE
Confidence            9999999999 999974

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.61  E-value=4.4e-05  Score=79.07  Aligned_cols=195  Identities=11%  Similarity=0.058  Sum_probs=116.3

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeee------cC---------CceEEEEEecCCCEEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFE------RG---------GGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      .-..|++++++..|+++..  +.|++++..+..........      ..         .....+.+..+...+.++..  
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--  702 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--  702 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence            3467889988876655543  55778887654321110000      00         01123444543444444432  


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeec----------------CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEE
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSF----------------RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQ  209 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~----------------~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~  209 (298)
                          .++.|++||..++.... +..                ......++++++  .+.++.  ++.|++||+.++.....
T Consensus       703 ----~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~  777 (1057)
T PLN02919        703 ----GQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL  777 (1057)
T ss_pred             ----CCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence                35789999987765421 110                012345777765  366654  37999999976543211


Q ss_pred             Eec----------------------cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc-----------
Q 022387          210 IET----------------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----------  256 (298)
Q Consensus       210 ~~~----------------------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~-----------  256 (298)
                      ..+                      ..+| ..+++  ++++.+++ +...++.|++|+..+..+.++.+           
T Consensus       778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvav--d~dG~LYV-ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~  853 (1057)
T PLN02919        778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLC--AKDGQIYV-ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA  853 (1057)
T ss_pred             EecccccCcccccccCCCCchhhhhccCC-ceeeE--eCCCcEEE-EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence            100                      0011 13344  44455555 47889999999988766554332           


Q ss_pred             ---cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          257 ---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       257 ---H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                         +-.....|+++++|+++++-+.+++ ||+||+.+++.
T Consensus       854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~  892 (1057)
T PLN02919        854 LKAQLSEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA  892 (1057)
T ss_pred             cccccCCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence               2235789999999999999988998 99999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.60  E-value=5.8e-05  Score=64.52  Aligned_cols=185  Identities=17%  Similarity=0.135  Sum_probs=116.1

Q ss_pred             CCCEEEEE-cCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe-e
Q 022387           96 DHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S  173 (298)
Q Consensus        96 dg~~lasg-s~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~-~  173 (298)
                      ++.++.++ .++.+..||..+++.+++..+  .+.+.... ....+.+++..       .++.+..+|..+++.+.+. .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~~~v~v~~-------~~~~l~~~d~~tG~~~W~~~~  104 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDGGRVYVGT-------SDGSLYALDAKTGKVLWSIYL  104 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEETTEEEEEE-------TTSEEEEEETTTSCEEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eeccccccccc-------ceeeeEecccCCcceeeeecc
Confidence            44555555 456788999999998888775  23222212 22344555555       3578999999999988774 3


Q ss_pred             cCC------ceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc---------eEEEEeCCCCeEEEEecCC
Q 022387          174 FRS------EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       174 ~~~------~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~---------~~~~s~~~d~~~la~sGs~  237 (298)
                      ...      ......+..+.++++. ++.|..+|+.+++.+.++........         ....... ++.+++  ++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~--~~~  181 (238)
T PF13360_consen  105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYV--SSG  181 (238)
T ss_dssp             -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEE--ECC
T ss_pred             ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEE--EcC
Confidence            221      2234555677788877 68999999999999998877432211         1222222 235554  455


Q ss_pred             Cce-EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQ-VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~-v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|. +.+ |..+.... .......+..+ ...++..|+.++.|+. |..||+++|+.+.++
T Consensus       182 ~g~~~~~-d~~tg~~~-w~~~~~~~~~~-~~~~~~~l~~~~~~~~-l~~~d~~tG~~~W~~  238 (238)
T PF13360_consen  182 DGRVVAV-DLATGEKL-WSKPISGIYSL-PSVDGGTLYVTSSDGR-LYALDLKTGKVVWQQ  238 (238)
T ss_dssp             TSSEEEE-ETTTTEEE-EEECSS-ECEC-EECCCTEEEEEETTTE-EEEEETTTTEEEEEE
T ss_pred             CCeEEEE-ECCCCCEE-EEecCCCccCC-ceeeCCEEEEEeCCCE-EEEEECCCCCEEeEC
Confidence            664 556 87776533 22112223332 3466777777778999 999999999998764

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.60  E-value=2.6e-06  Score=83.80  Aligned_cols=189  Identities=11%  Similarity=0.088  Sum_probs=125.8

Q ss_pred             EEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCce---EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           90 HISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ...+..+.+.++.+.. +.+.+|+...........  +....   .++-+....+.+.+++|.     .-+.|.+|+...
T Consensus        92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gs-----v~~~iivW~~~~  164 (967)
T KOG0974|consen   92 GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGS-----VFGEIIVWKPHE  164 (967)
T ss_pred             ccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEecc-----ccccEEEEeccc
Confidence            3555556667776655 666788776544332222  11211   112223344555555543     348899999873


Q ss_pred             C-cEEEEeecCCceEEEEEe--CCeEEEEEC-CeEEEEEcCCCeEEE-EEeccCCCcceEEEEeCCCCeEEEEecCCCce
Q 022387          166 S-RCIGELSFRSEVRSVKLR--RDRIIVVLE-QKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (298)
Q Consensus       166 ~-~~~~~~~~~~~v~~v~~~--~~~l~v~~~-~~I~iwd~~~~~~i~-~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (298)
                      . ..+...-+.+.++++.++  ...++.+.+ .++|+|++.+.+... +.-+|..-+.-+.|  .+  ..++ +++.|-+
T Consensus       165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~--~~--n~i~-t~gedct  239 (967)
T KOG0974|consen  165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF--LP--NRII-TVGEDCT  239 (967)
T ss_pred             cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe--cc--ceeE-EeccceE
Confidence            2 333344456789999985  456666664 699999998877655 33344444444444  44  2555 5899999


Q ss_pred             EEEEEcCCcceEeeccccc-ceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          241 VRVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       241 v~i~~~~~~~~~~~~~H~~-~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +++|+.+...+.++.+|.. .|+.++..++....+|++.|++ +|+||+...
T Consensus       240 crvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~r  290 (967)
T KOG0974|consen  240 CRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNGR  290 (967)
T ss_pred             EEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhcc
Confidence            9999988887778889976 5999999999999999999999 999997653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2.7e-06  Score=75.80  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=107.1

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC------CcEEEEeecC--CceEEEEEeCC-eEEEEE--CC
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELSFR--SEVRSVKLRRD-RIIVVL--EQ  194 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~------~~~~~~~~~~--~~v~~v~~~~~-~l~v~~--~~  194 (298)
                      |.+-+..+.++.++..|+  +||     +|..++||++..      .+.|.-..++  +.|+++.|+.. .++..+  .+
T Consensus        55 H~GCiNAlqFS~N~~~L~--SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   55 HTGCINALQFSHNDRFLA--SGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hccccceeeeccCCeEEe--ecC-----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            456666667766655444  444     578899999753      3445444433  57999999753 333333  37


Q ss_pred             eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeecccccceeEEEECCC-
Q 022387          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD-  269 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspd-  269 (298)
                      +|..-|+.+.+.+..+....+...+..++.+|-..++++ .+.+|.|.+||....+    +..+........++.|+|. 
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEE-EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            999999999988877765443333444444443455653 6899999999987665    1223334567899999987 


Q ss_pred             CCEEEEEeCCCCEEEEEECCCC
Q 022387          270 GQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ..+||+.+..+. +.|||.+..
T Consensus       207 P~Li~~~~~~~G-~~~~D~R~~  227 (609)
T KOG4227|consen  207 PALILVNSETGG-PNVFDRRMQ  227 (609)
T ss_pred             ceeEEeccccCC-CCceeeccc
Confidence            589999999999 999998753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.57  E-value=0.00029  Score=64.24  Aligned_cols=195  Identities=15%  Similarity=0.154  Sum_probs=118.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-----eEEEEEcCCC--ceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           87 TLLHISFNQDHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~-----gi~vw~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....++++|++++|.+..+.     ++..|.++..  +........ .......+.+..++..++++.-      ..++|
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~v  111 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGSV  111 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCeE
Confidence            45568899999998887652     5778887764  332222221 2455577788888988888873      35899


Q ss_pred             EEEeCCCCcEEEE----eec-----------CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCe--E--EEEEeccCC
Q 022387          159 MIWDDHQSRCIGE----LSF-----------RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLK--L--LHQIETIAN  215 (298)
Q Consensus       159 ~iWD~~~~~~~~~----~~~-----------~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~--~--i~~~~~~~~  215 (298)
                      .++++.....+..    +.+           .....++.++++  .++++.  .+.|.+|++....  +  ...+.....
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            9999987432222    211           235778889875  455543  3799999996543  3  233332211


Q ss_pred             -CcceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceE------eec-cc--ccceeEEEECCCCCEEEEEeCCCCEE
Q 022387          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK------FIM-AH--DSRIACFALTQDGQLLATSSTKGTLV  283 (298)
Q Consensus       216 -~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~------~~~-~H--~~~V~~l~fspdg~~lAt~S~Dgt~I  283 (298)
                       --.-+.|++++  .++.+....++.|.++++.  ...+.      ++. ..  ......|+++|||++|..+......|
T Consensus       192 ~GPRh~~f~pdg--~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  192 SGPRHLAFSPDG--KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             SSEEEEEE-TTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             CCCcEEEEcCCc--CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence             11235566554  5444457888999997776  33221      111 11  12588999999999877765433349


Q ss_pred             EEEECC
Q 022387          284 RIFNTL  289 (298)
Q Consensus       284 rIWd~~  289 (298)
                      -+|++.
T Consensus       270 ~vf~~d  275 (345)
T PF10282_consen  270 SVFDLD  275 (345)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.55  E-value=1.9e-06  Score=84.76  Aligned_cols=150  Identities=13%  Similarity=0.142  Sum_probs=107.0

Q ss_pred             EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE-----EEEeCCeEEEEEC---CeEEEEEcCCCe
Q 022387          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-----VKLRRDRIIVVLE---QKIFVYNFADLK  205 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-----v~~~~~~l~v~~~---~~I~iwd~~~~~  205 (298)
                      .+.+....+++..       .++.+-+||...+....++.....+.-     +.++.+.+.++..   +.|.+|+....+
T Consensus        94 ~l~~e~k~i~l~~-------~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   94 KLFEENKKIALVT-------SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             chhhhcceEEEEE-------cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            3344455566666       568899999988887777766553322     2345666665543   899999986333


Q ss_pred             EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (298)
Q Consensus       206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I  283 (298)
                      .-..+.+|...+..+.++  .|+.+++ +.|.|-++++|.+++.+..  +.-+|+..|+.++|.|+  +++|+|+|-+ .
T Consensus       167 ~p~~l~GHeG~iF~i~~s--~dg~~i~-s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-c  240 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTS--LDGRYIA-SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-C  240 (967)
T ss_pred             CcceecccCCceEEEEEc--cCCcEEE-EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-E
Confidence            333567776655444444  4558888 5999999999999987643  67799999999999998  9999999999 9


Q ss_pred             EEEECCCCcEEEec
Q 022387          284 RIFNTLDGTLLQEG  297 (298)
Q Consensus       284 rIWd~~tg~~l~~~  297 (298)
                      |+|+.. ++.+.+|
T Consensus       241 rvW~~~-~~~l~~y  253 (967)
T KOG0974|consen  241 RVWGVN-GTQLEVY  253 (967)
T ss_pred             EEEecc-cceehhh
Confidence            999643 4444333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=2e-05  Score=74.42  Aligned_cols=160  Identities=14%  Similarity=0.084  Sum_probs=96.2

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CC--eEEEEE
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQ--KIFVYN  200 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~--~I~iwd  200 (298)
                      ...+....|++++..++.++...    ....|.+||+.+++......+........|+++  .+++..  ++  .|.++|
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            44556678899999888876322    124689999988775433333334456778775  454433  23  588889


Q ss_pred             cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                      +.+++. ..+..+.......++++  |+..++++...+|...+  ++...+....+..+.......+|+|||++|+..+.
T Consensus       293 l~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        293 IATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             CCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            877654 34443333333445554  55767665555565555  56655555443322233456799999999988766


Q ss_pred             CC-C-EEEEEECCCCcE
Q 022387          279 KG-T-LVRIFNTLDGTL  293 (298)
Q Consensus       279 Dg-t-~IrIWd~~tg~~  293 (298)
                      ++ . .|.++|+.+++.
T Consensus       370 ~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        370 TNGKFNIARQDLETGAM  386 (448)
T ss_pred             cCCceEEEEEECCCCCe
Confidence            43 2 144567777754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=4.2e-05  Score=71.78  Aligned_cols=160  Identities=14%  Similarity=0.073  Sum_probs=98.6

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CC--eEEEEE
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQ--KIFVYN  200 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~--~I~iwd  200 (298)
                      ...+....|++++..+++++...    ....|.+||+.+++......+...+....|+++  .++...  ++  .|.+||
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~----~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQ----KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCC----CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            44556678889999888876332    124699999998866443334444556788875  454433  22  788999


Q ss_pred             cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                      +.+++. +.+..+........++  +|+..++++...+|.  |.+++...+....+..........+|+|||++|+..+.
T Consensus       274 ~~~~~~-~~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        274 LASRQL-SRVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             CCCCCe-EEcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc
Confidence            987654 3344333333334444  455666655555554  55566665554433322233456789999999988875


Q ss_pred             CC--CEEEEEECCCCcE
Q 022387          279 KG--TLVRIFNTLDGTL  293 (298)
Q Consensus       279 Dg--t~IrIWd~~tg~~  293 (298)
                      ++  ..|.+||+.+++.
T Consensus       351 ~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        351 QDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             cCCceEEEEEECCCCCE
Confidence            43  1278899988754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.53  E-value=9.5e-06  Score=71.30  Aligned_cols=207  Identities=18%  Similarity=0.238  Sum_probs=125.6

Q ss_pred             cCccchhhhhccccccc------cCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEE
Q 022387           32 VSSEDQTDQLQSLESFS------SMPQDEPDSFSPS--IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAG  103 (298)
Q Consensus        32 ~~~~~~~~~~~~~~~~~------~~p~~~p~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg  103 (298)
                      +|..|||.-++......      .+|...|....+.  .|...+........+.......|.-.|.+|+++.|+..+.++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88999998776644211      2333333332222  233233333334444556667888899999999999999998


Q ss_pred             cCCeEEEEEcCCCceEEEEe-ee-c-----CCceEEEEEecC-CCEEEEEeCCCCCCCCCCeEEEEeCCCCc-E-----E
Q 022387          104 TDHGFRIYNCDPFREIFRRD-FE-R-----GGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQSR-C-----I  169 (298)
Q Consensus       104 s~~gi~vw~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-~-----~  169 (298)
                      .+=.|-+|+++-....+... .. +     ..-+...++++. ++.++.++       +.|+|||-|++..- |     +
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-------SKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-------SKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-------CCCcEEEeechhhhhhcchhhh
Confidence            77778899987544333221 00 0     011233444443 45666666       56999999988421 1     1


Q ss_pred             EEe-------ec----CCceEEEEEeCCeEEEE-EC-CeEEEEEc-CCCeEEEEEeccCCCc-------------ceEEE
Q 022387          170 GEL-------SF----RSEVRSVKLRRDRIIVV-LE-QKIFVYNF-ADLKLLHQIETIANPK-------------GLCAV  222 (298)
Q Consensus       170 ~~~-------~~----~~~v~~v~~~~~~l~v~-~~-~~I~iwd~-~~~~~i~~~~~~~~~~-------------~~~~~  222 (298)
                      .+.       .|    -..|..+.|+..+-.+. -+ -+|++||+ ...+++.+++.|..-.             .-..+
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence            111       11    12466677877644444 34 69999999 6788888888775311             12344


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEc
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHY  246 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~  246 (298)
                      +++++...+. +|+.+..+++++.
T Consensus       336 ~~sg~~~~v~-TGsy~n~frvf~~  358 (433)
T KOG1354|consen  336 SWSGNDSYVM-TGSYNNVFRVFNL  358 (433)
T ss_pred             EEcCCcceEe-cccccceEEEecC
Confidence            5666667777 5999999999873

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=9e-05  Score=69.34  Aligned_cols=192  Identities=11%  Similarity=0.043  Sum_probs=114.4

Q ss_pred             CeEEEEEcCCCCE-EEEEcC-C-e--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           87 TLLHISFNQDHGC-FAAGTD-H-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        87 ~V~~v~fs~dg~~-lasgs~-~-g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ....-.|+|||+. ++..+. + .  +.++|+.+++......+  .+......+++++..+++.....    .+..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--CCcEEeeEECCCCCEEEEEEccC----CCcEEEEE
Confidence            6678999999984 664333 2 2  55778877665333332  44455667889998887765422    24678888


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      |+..+................|+++  .++...+    ..|.++|+.+++..+.... ...  ..  .+++|+..+++..
T Consensus       263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~--~~SPDG~~Ia~~~  337 (419)
T PRK04043        263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NS--SVSTYKNYIVYSS  337 (419)
T ss_pred             ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--Cc--eECCCCCEEEEEE
Confidence            9887764432233322334467764  4555554    2788889877665322211 111  12  4455567777655


Q ss_pred             CCC------c--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC--EEEEEECCC
Q 022387          236 LQK------G--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLD  290 (298)
Q Consensus       236 s~d------g--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt--~IrIWd~~t  290 (298)
                      ...      +  .|.+.+...+....+... .......|+|||+.|+-.+.++.  .+-+.++..
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            443      3  566677777766655543 23346889999998877665432  245556544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.50  E-value=3.7e-06  Score=84.15  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=93.7

Q ss_pred             cCCCEEEEEeCCCCCCCCCCeEEEEeCCCC--c-----EEEEee-cCCceEEEEE--eCCeEEEEE-CCeEEEEEcCCC-
Q 022387          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS--R-----CIGELS-FRSEVRSVKL--RRDRIIVVL-EQKIFVYNFADL-  204 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~--~-----~~~~~~-~~~~v~~v~~--~~~~l~v~~-~~~I~iwd~~~~-  204 (298)
                      .++.++++++       .||+||+||.++-  .     ...++. ..+++.++.+  +.+.+++++ ||.|++.++... 
T Consensus      1059 ~~~s~FvsgS-------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1059 EHTSLFVSGS-------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred             CCCceEEEec-------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence            3345666655       7899999998651  1     222233 2346666654  567777776 589999988541 


Q ss_pred             -e-----EEEEEeccCCCcceE---EEEeCCCCeEEEEecCCCceEEEEEcCCcce-Ee--ecccccceeEEEECCCCCE
Q 022387          205 -K-----LLHQIETIANPKGLC---AVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF--IMAHDSRIACFALTQDGQL  272 (298)
Q Consensus       205 -~-----~i~~~~~~~~~~~~~---~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~--~~~H~~~V~~l~fspdg~~  272 (298)
                       +     ..+....+.. ..++   ++..+.....+++ +...+.|..||...... .+  ..--.+.|++++.+|.+.+
T Consensus      1132 ~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1132 VSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred             cccceeeeeecccccCC-CceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence             1     1111111111 1122   2222222224554 78888888899876532 22  2233578999999999999


Q ss_pred             EEEEeCCCCEEEEEECCCCcEEEe
Q 022387          273 LATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       273 lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      |++|..-|. +-+||++=+..+.+
T Consensus      1210 lviGts~G~-l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1210 LVIGTSRGQ-LVLWDLRFRVPILS 1232 (1431)
T ss_pred             EEEecCCce-EEEEEeecCceeec
Confidence            999999998 99999997776644

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.49  E-value=7.1e-05  Score=68.51  Aligned_cols=123  Identities=14%  Similarity=0.047  Sum_probs=88.0

Q ss_pred             CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      ..+++...++..|+-..+.-+++-++.|..+|  +.||+.++.+......  .-+.+..+.++.++..++++.       
T Consensus       350 ~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaN-------  420 (668)
T COG4946         350 DGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVAN-------  420 (668)
T ss_pred             CCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEc-------
Confidence            34566677888899999999999899998766  6799999887433222  246778888888888777766       


Q ss_pred             CCCeEEEEeCCCCcEEEE-eecCCceEEEEEeCCeEEEEE-------CCeEEEEEcCCCeEE
Q 022387          154 PLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLL  207 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~-~~~~~~v~~v~~~~~~l~v~~-------~~~I~iwd~~~~~~i  207 (298)
                      ....+-+.|+.++..... -.-..-|+.+.||++.-.++-       .+.|++||+.+++..
T Consensus       421 dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         421 DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            446677778988865322 222346788889887544442       268999999876654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=8.2e-07  Score=82.03  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=95.4

Q ss_pred             EeecC-CceEEEEEeCCeEEEE--EC-CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387          171 ELSFR-SEVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (298)
Q Consensus       171 ~~~~~-~~v~~v~~~~~~l~v~--~~-~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~  245 (298)
                      ++..+ +-|.++.|+.++.+++  .+ -.+.|||.-..|+++.+.+ |...+.++.|-|...+.+++ +|..|..|+++|
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~-sgAgDk~i~lfd  123 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL-SGAGDKLIKLFD  123 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE-eccCcceEEEEe
Confidence            34444 5789999987654443  33 4899999998999999876 76777888888887777776 699999999999


Q ss_pred             cCCc-----------ceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCC
Q 022387          246 YASK-----------RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       246 ~~~~-----------~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ++..           +...+.+|...|..|+-.|++ ..|-++|+||+ ||-+|++.
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiRE  179 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIRE  179 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccC
Confidence            8731           223567899999999999998 89999999999 99999986

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.45  E-value=1e-05  Score=71.05  Aligned_cols=196  Identities=11%  Similarity=0.230  Sum_probs=120.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC-CCc-eEEEE-eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCD-PFR-EIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      +.+++++.++++...|.+|-+.| +-=+.+. ... ..+.+ ..+|...+..+-+.-....+++.+       .|+. ..
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~-------~dk~-~~  139 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG-------KDKQ-FA  139 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec-------cccc-eE
Confidence            45899999999999999999866 3344332 111 11111 111444555544444444444444       3343 34


Q ss_pred             EeC-CCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEc--CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDD-HQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~-~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~--~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      |-. +.++-+....+.....++.+.-....+.. .+.|.+-.+  ....++.++.+|...  ..+.++++...+|. +|.
T Consensus       140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~Wd~~~~~Lf-Sg~  216 (404)
T KOG1409|consen  140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKWDPGQRLLF-SGA  216 (404)
T ss_pred             EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEEcCCCcEEE-ecc
Confidence            543 33433333333222222222211112221 244444433  556778888877554  44556776666666 699


Q ss_pred             CCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          237 QKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       237 ~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .|-.+.+||+..++  ...+.+|...|..++.-+--+.|.+++.||. |-+||+....
T Consensus       217 ~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~~r  273 (404)
T KOG1409|consen  217 SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNVKR  273 (404)
T ss_pred             ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecccee
Confidence            99999999998765  3478899999999999998999999999999 9999987643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.44  E-value=6.3e-06  Score=70.95  Aligned_cols=138  Identities=14%  Similarity=0.107  Sum_probs=89.6

Q ss_pred             CCCeEEEEeCCCCcEEEEeecC------C-ceEEEEEe--CCeEEEEE-CCeEEEEEcCCCe--EEEEEeccCCCcceEE
Q 022387          154 PLNKVMIWDDHQSRCIGELSFR------S-EVRSVKLR--RDRIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCA  221 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~------~-~v~~v~~~--~~~l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~  221 (298)
                      ..|.|.++-.........++.-      . ...++.|+  ...+++.. .+.+.+-+...+.  .+++.+.|......+.
T Consensus        93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~  172 (339)
T KOG0280|consen   93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK  172 (339)
T ss_pred             ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence            3466777754433322222211      1 13444554  34555543 3677755554443  3447788877777777


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcc--eE-eecccccceeEEEEC-CCCCEEEEEeCCCCEEEEEECCC-CcEE
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR--TK-FIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLD-GTLL  294 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~-~~~~H~~~V~~l~fs-pdg~~lAt~S~Dgt~IrIWd~~t-g~~l  294 (298)
                      |+...  .-++++|+.||.+.-||..-..  +. ..+.|...|.+|.=| |.+.++||||.|.. ||+||.++ |+.+
T Consensus       173 f~~~~--pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  173 FSDKE--PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPL  247 (339)
T ss_pred             cccCC--CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCcc
Confidence            76543  3455579999999999998222  22 356799999999988 56899999999999 99999995 4443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.44  E-value=3.8e-06  Score=72.87  Aligned_cols=201  Identities=14%  Similarity=0.248  Sum_probs=113.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc-eEE--EEeee-c------------CCceEEEEEecCC--CEEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIF--RRDFE-R------------GGGIGVVEMLFRC--NILALV  145 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~-~~~--~~~~~-~------------~~~~~~~~~~~~~--~~~~~~  145 (298)
                      ...|++|.|...|.|||+|..+| +.+|.-.... +.+  ..+|+ |            +..+..+.|.-++  +.+.++
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            34899999999999999998877 6677543221 111  11111 1            2234455554433  234454


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcE-------------------E--------EEeec-----------------CCceEEE
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRC-------------------I--------GELSF-----------------RSEVRSV  181 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~-------------------~--------~~~~~-----------------~~~v~~v  181 (298)
                      +       .|++|++|.+.....                   +        ..+..                 .-.+.++
T Consensus       106 t-------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170         106 T-------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             c-------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence            5       689999998654310                   0        00111                 1134556


Q ss_pred             EEeCCe--EEEEECCeEEEEEcCCCe---EEEEEeccC-----CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-
Q 022387          182 KLRRDR--IIVVLEQKIFVYNFADLK---LLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-  250 (298)
Q Consensus       182 ~~~~~~--l~v~~~~~I~iwd~~~~~---~i~~~~~~~-----~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-  250 (298)
                      .++.+.  ++.+.+=.|.+|++.-..   .+..++.|.     ..+.+..|++.. +..+.+ .+..|.|.+-|+.... 
T Consensus       179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~-cn~fmY-SsSkG~Ikl~DlRq~al  256 (460)
T COG5170         179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM-CNVFMY-SSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-cceEEE-ecCCCcEEehhhhhhhh
Confidence            666543  223333488999884211   122333332     123344555543 234443 6889999997776321 


Q ss_pred             ----eE------------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEe
Q 022387          251 ----TK------------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQE  296 (298)
Q Consensus       251 ----~~------------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg-~~l~~  296 (298)
                          .+            -+..-.+.|..+.|+++|+|+++-+.-  .|+|||++.. .++++
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k~pikT  317 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMAKNPIKT  317 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccccCCcee
Confidence                11            122334578999999999999988644  4999999864 34544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=0.00026  Score=62.76  Aligned_cols=201  Identities=11%  Similarity=0.165  Sum_probs=128.6

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEE--EeeecCCc----------eEEEEEecCCCEEEEEeCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFR--RDFERGGG----------IGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      +-+.|+++++|++|+++.- .| |.++-++..+.+..  ....|.+.          +-...+.+++++++++.-|.   
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~---  166 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT---  166 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC---
Confidence            3388999999999999975 33 77998765332111  11113333          55666778888888877554   


Q ss_pred             CCCCeEEEEeCCCCcEEEE----eecCCceEEEEEeCCeEE--EEE--CCeEEEEEcCCC-eEEEEEecc-------CCC
Q 022387          153 YPLNKVMIWDDHQSRCIGE----LSFRSEVRSVKLRRDRII--VVL--EQKIFVYNFADL-KLLHQIETI-------ANP  216 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~----~~~~~~v~~v~~~~~~l~--v~~--~~~I~iwd~~~~-~~i~~~~~~-------~~~  216 (298)
                         -.|.+|++..+.....    +.-..--.-+.||++.-+  +..  +++|.+|..... ..+..++.+       ...
T Consensus       167 ---Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         167 ---DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             ---ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence               3589999987654322    222234566889986433  333  589999998652 333344322       233


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceE---eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC--
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--  289 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~---~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~--  289 (298)
                      .+.-+++-++|+.+|-++-.....|.++.+..  ..+.   ...-+....+...|+++|++|+.+.+|+..|.||...  
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            45566777777788886544445666655543  2232   2223444589999999999999999988779999876  


Q ss_pred             CCcE
Q 022387          290 DGTL  293 (298)
Q Consensus       290 tg~~  293 (298)
                      +|++
T Consensus       324 TG~L  327 (346)
T COG2706         324 TGRL  327 (346)
T ss_pred             CceE
Confidence            4543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.40  E-value=1.7e-06  Score=89.40  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=100.9

Q ss_pred             CCCeEEEEeCCCCcEEEEeecC--CceEEEEEeC--CeEEE-EECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRR--DRIIV-VLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~--~~l~v-~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      .|+.|++|....++.+..+...  ..|..+.|+.  +.+.+ ..+|.+.+|-+. .++....+.|..  ..-+|.+-+  
T Consensus      2228 ~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk--~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK--ALSDFRFIG-- 2302 (2439)
T ss_pred             CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCc--cccceeeee--
Confidence            6799999999998887766643  4677777764  33333 357899999887 445555555543  333443333  


Q ss_pred             eEEEEec--CCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          229 LVLVCPG--LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       229 ~~la~sG--s~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      ..++.+|  +.++.+.+||.......  .-++|.+.++++++-|..++|.|||.+|. |.|||++-.+++|+|+
T Consensus      2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHHHHHHHhh
Confidence            3444334  56889999997654322  34899999999999999999999999999 9999999998888763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.37  E-value=8.2e-05  Score=65.21  Aligned_cols=202  Identities=12%  Similarity=0.090  Sum_probs=119.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC--CC------
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP--DP------  151 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------  151 (298)
                      ....+.+.+++|||||+.|..-++ +- |.||.+.+.+..+...-  +..+..+.+..++...++++--+  +.      
T Consensus        88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            345568999999999988777776 44 66999998877655542  56667778888888777765321  10      


Q ss_pred             --------------------CC-CCCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeE-
Q 022387          152 --------------------QY-PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKL-  206 (298)
Q Consensus       152 --------------------~~-~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~-  206 (298)
                                          .. +++-+.+||---.-.+....-.-.+..+.+++  ++++++. |+.+|+.+--+.+. 
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                                00 13446778742221211222223456666665  3333332 34554433221111 


Q ss_pred             -----------------------------------------------------------EEEEec---cCC---CcceEE
Q 022387          207 -----------------------------------------------------------LHQIET---IAN---PKGLCA  221 (298)
Q Consensus       207 -----------------------------------------------------------i~~~~~---~~~---~~~~~~  221 (298)
                                                                                 +++++.   ..+   .++.++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence                                                                       111110   011   123456


Q ss_pred             EEeCCCCeEEEEecCCCc---eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          222 VSQGVGSLVLVCPGLQKG---QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg---~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      |++|.  .++|+  ..|+   .+.+||+.+.++........+|+...|.|....|+.+--... +.+|...-
T Consensus       326 fs~Ds--~y~aT--rnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr-LY~W~psg  392 (447)
T KOG4497|consen  326 FSCDS--TYAAT--RNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR-LYFWAPSG  392 (447)
T ss_pred             ecCCc--eEEee--ecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce-EEEEcCCC
Confidence            66554  77774  3333   566799998887766667789999999999877777754555 77887554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.33  E-value=6.7e-06  Score=69.83  Aligned_cols=153  Identities=14%  Similarity=0.192  Sum_probs=93.2

Q ss_pred             CCCCeEEEEEcC-CCC--EEEEEcCCe-EEEEEcCCCceEEEEee---------ecCCceEEEEEecCCCEEEEEeCCCC
Q 022387           84 PPPTLLHISFNQ-DHG--CFAAGTDHG-FRIYNCDPFREIFRRDF---------ERGGGIGVVEMLFRCNILALVGGGPD  150 (298)
Q Consensus        84 ~~~~V~~v~fs~-dg~--~lasgs~~g-i~vw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..+.|.|..+.- +++  +|+.|-+.| +.+||+.+.........         .|...+..+++....+.-+..+    
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg----  224 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG----  224 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC----
Confidence            345677777543 444  345666677 77999987632221110         0455555555543222222222    


Q ss_pred             CCCCCCeEEEEeCCC--CcEE--EEeec-CCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEE
Q 022387          151 PQYPLNKVMIWDDHQ--SRCI--GELSF-RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~--~~~~--~~~~~-~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~  222 (298)
                         .+.++..|.+..  +.+.  .++.. +.-|..+..-++..+.++   |+.||||..++++++..++-|...+..++|
T Consensus       225 ---a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  225 ---ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             ---ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence               456788887654  3321  12222 224555666665544443   689999999999999999888765555555


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEc
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHY  246 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~  246 (298)
                      +  ++..++| +++.|+.|.+|++
T Consensus       302 s--pd~~lmA-aaskD~rISLWkL  322 (323)
T KOG0322|consen  302 S--PDCELMA-AASKDARISLWKL  322 (323)
T ss_pred             C--CCCchhh-hccCCceEEeeec
Confidence            5  4558888 4999999999975

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.33  E-value=4.6e-05  Score=70.11  Aligned_cols=113  Identities=12%  Similarity=0.104  Sum_probs=76.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC--------CCCCCCe
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD--------PQYPLNK  157 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~  157 (298)
                      -++..++|||.|++|++....+|.+|.-.....+.+..   ...+.-+.+++...+|.+=.....        ....++.
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             cchhheeecCcchheehhhccceEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            37889999999999999999999999887776554444   355666666666666654321110        1224567


Q ss_pred             EEEEeCCCCcEEEEeecCC-c-----eEEEEEeCCeEEEEECCeEEEEEc
Q 022387          158 VMIWDDHQSRCIGELSFRS-E-----VRSVKLRRDRIIVVLEQKIFVYNF  201 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~-~-----v~~v~~~~~~l~v~~~~~I~iwd~  201 (298)
                      +.+||..++..+..+.... +     +.....+..+.+-...+.++|+++
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~  159 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI  159 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence            9999999999988876542 2     333333444444445678888886

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.30  E-value=0.00092  Score=59.06  Aligned_cols=206  Identities=16%  Similarity=0.150  Sum_probs=118.9

Q ss_pred             CeEEEEEcC-CCCEEEEEcCCe--EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           87 TLLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        87 ~V~~v~fs~-dg~~lasgs~~g--i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      +...++.+| ++..+|.+-.-|  ..+||+.+.+........ ..+=.+...++.++..|++.-...+  ...|.|-|||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--~g~G~IgVyd   83 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--TGRGVIGVYD   83 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--CCcEEEEEEE
Confidence            455788899 567788888744  559999888765544321 1112345667788888776543221  1458899999


Q ss_pred             CC-CCcEEEEeecCC-ceEEEEEeCCe--EEEEEC-------------------CeEEEEEcCCCeEEEEEec--cCCCc
Q 022387          163 DH-QSRCIGELSFRS-EVRSVKLRRDR--IIVVLE-------------------QKIFVYNFADLKLLHQIET--IANPK  217 (298)
Q Consensus       163 ~~-~~~~~~~~~~~~-~v~~v~~~~~~--l~v~~~-------------------~~I~iwd~~~~~~i~~~~~--~~~~~  217 (298)
                      +. .-+.+.++..++ .-..+.+.++.  |+++..                   ..+.+.|..+++++.+..-  ..+..
T Consensus        84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            99 456667776543 23334455544  555432                   1455556666766655332  11111


Q ss_pred             ceEEEEeCCCCeEEEEecCCCc-------eEEEEEcCCcceEe-------ecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYASKRTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg-------~v~i~~~~~~~~~~-------~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I  283 (298)
                      .+=.+..++++..++ ..-..|       .|-++..... +..       ...-...|-+|+++++|.++|..|--|..+
T Consensus       164 SiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            222222233323222 122111       1111222211 111       123357899999999999998888777779


Q ss_pred             EEEECCCCcEEEe
Q 022387          284 RIFNTLDGTLLQE  296 (298)
Q Consensus       284 rIWd~~tg~~l~~  296 (298)
                      .+||..+|+++..
T Consensus       242 ~~~d~~tg~~~~~  254 (305)
T PF07433_consen  242 AVWDAATGRLLGS  254 (305)
T ss_pred             EEEECCCCCEeec
Confidence            9999999998764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.29  E-value=0.00023  Score=65.22  Aligned_cols=172  Identities=12%  Similarity=0.037  Sum_probs=113.0

Q ss_pred             EcC-CCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC-eEEEEeCCCCcEEE
Q 022387           93 FNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN-KVMIWDDHQSRCIG  170 (298)
Q Consensus        93 fs~-dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~v~iWD~~~~~~~~  170 (298)
                      |++ +|+++|.-+.+.+-|.+.-..-.   ....+.+.+.-....-+++.++++.       .|+ .+-|+|.++++..+
T Consensus       327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt-------~dgD~l~iyd~~~~e~kr  396 (668)
T COG4946         327 FAVVNGDYIALVSRGKAFIMRPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGT-------NDGDKLGIYDKDGGEVKR  396 (668)
T ss_pred             hccCCCcEEEEEecCcEEEECCCCCee---EEcCCCCceEEEEEccCCcceEEec-------cCCceEEEEecCCceEEE
Confidence            453 78999998887755544322211   1111355677777776777777766       455 79999999988766


Q ss_pred             EeecCCceEEEEEeCCe--EEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC----ceEEE
Q 022387          171 ELSFRSEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----GQVRV  243 (298)
Q Consensus       171 ~~~~~~~v~~v~~~~~~--l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d----g~v~i  243 (298)
                      ....-+.|.++..+++.  ++++.+ ..|.++|+.+++.. .+ .......+..|.++++..++|+ +--+    ..|++
T Consensus       397 ~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~i-dkS~~~lItdf~~~~nsr~iAY-afP~gy~tq~Ikl  473 (668)
T COG4946         397 IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LI-DKSEYGLITDFDWHPNSRWIAY-AFPEGYYTQSIKL  473 (668)
T ss_pred             eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Ee-cccccceeEEEEEcCCceeEEE-ecCcceeeeeEEE
Confidence            55555788898888763  334433 47788888887752 22 2234456778888888899997 4444    47888


Q ss_pred             EEcCCcceEeecccccceeEEEECCCCCEEEEEe
Q 022387          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (298)
Q Consensus       244 ~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S  277 (298)
                      +|+.+.++.-...-++.=.+=||.|||++|-=-|
T Consensus       474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            9998876554333334445568999998765443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=3.3e-05  Score=68.87  Aligned_cols=201  Identities=14%  Similarity=0.141  Sum_probs=123.5

Q ss_pred             CCeEEEEEcCCCCE-EEEE--cCCeEEEEEcCCCceEEEE----eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           86 PTLLHISFNQDHGC-FAAG--TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        86 ~~V~~v~fs~dg~~-lasg--s~~gi~vw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .+|..++|.-|++. +..+  .++-+..+..+...+....    .. +.+...+..+......++++.       .+|.+
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc~-------~sG~l  127 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITCV-------SSGNL  127 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEEe-------cCCcE
Confidence            47888888877652 2233  2344455555444332221    00 122222333333344555555       45889


Q ss_pred             EEEeCCCCc----EEEEeecCCceEEEEEeC---CeEEEEE-C--CeEEEEEcCCCeEEEEEeccC-------CCcceEE
Q 022387          159 MIWDDHQSR----CIGELSFRSEVRSVKLRR---DRIIVVL-E--QKIFVYNFADLKLLHQIETIA-------NPKGLCA  221 (298)
Q Consensus       159 ~iWD~~~~~----~~~~~~~~~~v~~v~~~~---~~l~v~~-~--~~I~iwd~~~~~~i~~~~~~~-------~~~~~~~  221 (298)
                      .+|....+-    ....+.....+..+.-++   ..++.++ .  +.+++||+.+.+.+.+-+-..       -|+...+
T Consensus       128 ~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td  207 (412)
T KOG3881|consen  128 QVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD  207 (412)
T ss_pred             EEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence            999987432    233445555555555443   2222232 2  579999998776655433221       1333344


Q ss_pred             EEeCCC--CeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          222 VSQGVG--SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       222 ~s~~~d--~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +.+-+.  +..|| +++.-+.|++||....  ++..+.--..+|+++..-|+|+++.+|-.-|. +..||++.++++.-
T Consensus       208 i~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  208 IRFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGC  284 (412)
T ss_pred             ceecCCCCCceEE-EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeecc
Confidence            433332  56676 4899999999998753  45677777889999999999999999999998 99999999987643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.27  E-value=0.00044  Score=62.35  Aligned_cols=179  Identities=12%  Similarity=0.216  Sum_probs=110.4

Q ss_pred             eEEEEEcCCCceEEEEeeecCCceEEEE-EecC------CCEEEEEeC---CCCCCCCCCeEEEEeCCCC-------cEE
Q 022387          107 GFRIYNCDPFREIFRRDFERGGGIGVVE-MLFR------CNILALVGG---GPDPQYPLNKVMIWDDHQS-------RCI  169 (298)
Q Consensus       107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~---~~~~~~~d~~v~iWD~~~~-------~~~  169 (298)
                      .++|.|-.+.+.+....+..+..+.+++ +.+.      ..+++++++   +++.....|.|.++++.+.       +.+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            3677787777766666664333333333 3333      344444443   2211111288999999884       234


Q ss_pred             EEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcC
Q 022387          170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYA  247 (298)
Q Consensus       170 ~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~  247 (298)
                      .+....+.|.++..-.+.++++.++.|.+|++...+.+........+..++++....  .++++ |+....+.+  |+..
T Consensus        83 ~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~v-gD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   83 HSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILV-GDAMKSVSLLRYDEE  159 (321)
T ss_dssp             EEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEE-EESSSSEEEEEEETT
T ss_pred             EEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEE-EEcccCEEEEEEEcc
Confidence            455677899999877888999999999999997666223333333444666666654  35554 676666666  5654


Q ss_pred             CcceEeecc--cccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          248 SKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       248 ~~~~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ...+..+..  ....+++++|-+|+..++.+..+|. +.++...
T Consensus       160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~  202 (321)
T PF03178_consen  160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYN  202 (321)
T ss_dssp             TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-
T ss_pred             CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEEC
Confidence            444443332  3445899999877789999999999 9999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=0.0014  Score=58.16  Aligned_cols=197  Identities=17%  Similarity=0.189  Sum_probs=125.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----CeEEEEEcCC--CceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           86 PTLLHISFNQDHGCFAAGTD----HGFRIYNCDP--FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ...+-++|+|++++|.++-.    .++.-|.++.  ++..+..... .+.+.+.+++..++..++.+.-      .-+.|
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY------~~g~v  113 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY------HSGSV  113 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc------cCceE
Confidence            46778999999998888754    3477888876  3433322221 2444578888888888888773      34889


Q ss_pred             EEEeCCC-Cc---EEEEeecCC----------ceEEEEEeCCe-EEEEEC---CeEEEEEcCCCeEEEEEeccCCC---c
Q 022387          159 MIWDDHQ-SR---CIGELSFRS----------EVRSVKLRRDR-IIVVLE---QKIFVYNFADLKLLHQIETIANP---K  217 (298)
Q Consensus       159 ~iWD~~~-~~---~~~~~~~~~----------~v~~v~~~~~~-l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~---~  217 (298)
                      .++-++. |.   .+..+.+..          .+....+.++. .+++.+   ++|.+|++.++++...-...-.+   -
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP  193 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP  193 (346)
T ss_pred             EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence            9998866 32   223333322          37777788765 444433   79999999877653322211111   1


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeeccc---------ccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH---------DSRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H---------~~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      .-+.|+++++--+++  .--+++|.+|.++.  .++..+.-+         ......|.+++||++|-.+-.--..|-+|
T Consensus       194 RHi~FHpn~k~aY~v--~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         194 RHIVFHPNGKYAYLV--NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             ceEEEcCCCcEEEEE--eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            246777776555555  68899999988775  333333222         23477888999999998883322248888


Q ss_pred             ECCC
Q 022387          287 NTLD  290 (298)
Q Consensus       287 d~~t  290 (298)
                      .+..
T Consensus       272 ~V~~  275 (346)
T COG2706         272 SVDP  275 (346)
T ss_pred             EEcC
Confidence            7763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.0002  Score=67.21  Aligned_cols=158  Identities=11%  Similarity=0.068  Sum_probs=92.3

Q ss_pred             EEEEEecCCCEEE--EEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C----eEEEEE
Q 022387          131 GVVEMLFRCNILA--LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q----KIFVYN  200 (298)
Q Consensus       131 ~~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~----~I~iwd  200 (298)
                      ..=.|++++..++  .++...    ....|.+.++..++..+...+........|+++  .++...+  +    .+.+|+
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             ccceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            3346778876533  344321    124588889888765544445555566778876  4554442  2    344467


Q ss_pred             cCCC--eEEEEEecc-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEc--C--CcceEeecccccceeEEEECCCCCEE
Q 022387          201 FADL--KLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--A--SKRTKFIMAHDSRIACFALTQDGQLL  273 (298)
Q Consensus       201 ~~~~--~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~--~--~~~~~~~~~H~~~V~~l~fspdg~~l  273 (298)
                      +..+  .....+... ......  .++++|+..|++....+|...+|.+  .  .+....+..+...+...+|||||++|
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~--p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGN--PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCC--eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            6542  122233221 122223  3445566777765566776666543  2  22344555566678899999999999


Q ss_pred             EEEeCCC--CEEEEEECCCCcEE
Q 022387          274 ATSSTKG--TLVRIFNTLDGTLL  294 (298)
Q Consensus       274 At~S~Dg--t~IrIWd~~tg~~l  294 (298)
                      |..+.++  ..|.+||+.+|+..
T Consensus       342 af~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             EEEEcCCCCcEEEEEECCCCCeE
Confidence            8776542  23899999988653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=7.8e-06  Score=71.86  Aligned_cols=167  Identities=14%  Similarity=0.098  Sum_probs=113.0

Q ss_pred             EEEEcC--CCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC-
Q 022387           90 HISFNQ--DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-  166 (298)
Q Consensus        90 ~v~fs~--dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~-  166 (298)
                      .++|+-  -|-.+++|...++.+-|++++....-..   .+++....+....+++.-..       ..|.|...|++.+ 
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf~s---ksDVfAlQf~~s~nLv~~Gc-------RngeI~~iDLR~rn  285 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQS---KSDVFALQFAGSDNLVFNGC-------RNGEIFVIDLRCRN  285 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeeccccccccc---chhHHHHHhcccCCeeEecc-------cCCcEEEEEeeecc
Confidence            346663  3456778888888898998875433222   45555555555555554443       5688999999864 


Q ss_pred             ----cEEEEeecCCceEEEE---EeCCeEEEE-ECCeEEEEEcCCCeE---EEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          167 ----RCIGELSFRSEVRSVK---LRRDRIIVV-LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       167 ----~~~~~~~~~~~v~~v~---~~~~~l~v~-~~~~I~iwd~~~~~~---i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                          .+.+.+-+.+.|+++.   |+.+.+++. .+++|++||++-.++   +.++.+|.+-..-+-+..++....++ ++
T Consensus       286 qG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~-s~  364 (425)
T KOG2695|consen  286 QGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF-SV  364 (425)
T ss_pred             cCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEE-Ec
Confidence                4566677778888865   455555544 469999999987777   88999987766556666666656666 48


Q ss_pred             CCCceEEEEEcCCcceE-eec----ccccceeEEEEC
Q 022387          236 LQKGQVRVEHYASKRTK-FIM----AHDSRIACFALT  267 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~-~~~----~H~~~V~~l~fs  267 (298)
                      +.|-..+||.++...+. +++    +-...+.+++|.
T Consensus       365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99999999999876544 332    222346666664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=0.00085  Score=62.61  Aligned_cols=79  Identities=10%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC---CCEEEEEECCCC
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDG  291 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIWd~~tg  291 (298)
                      .|+..+.+++++...-+ +-|----.+.|++.+.+.+..+.  .++=+++-|+|.|++|+-+|.+   |. |-|||+.+.
T Consensus       271 GPVhdv~W~~s~~EF~V-vyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~  346 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAV-VYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNR  346 (566)
T ss_pred             CCceEEEECCCCCEEEE-EEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccch
Confidence            44445555554432223 33666667777777766655443  4677899999999999999875   57 999999998


Q ss_pred             cEEEec
Q 022387          292 TLLQEG  297 (298)
Q Consensus       292 ~~l~~~  297 (298)
                      |+|-.+
T Consensus       347 K~i~~~  352 (566)
T KOG2315|consen  347 KLIAKF  352 (566)
T ss_pred             hhcccc
Confidence            887543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.19  E-value=5.3e-05  Score=74.13  Aligned_cols=179  Identities=15%  Similarity=0.222  Sum_probs=121.3

Q ss_pred             CCEEEEEc-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (298)
Q Consensus        97 g~~lasgs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (298)
                      +..+.-|+ .+.+..+|+.+.++......   +.-.+.-+..++..+.++.       ..|+|.+=|.++.+.++++..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---~a~~v~imR~Nnr~lf~G~-------t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV---SASGVTIMRYNNRNLFCGD-------TRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec---cCCceEEEEecCcEEEeec-------ccceEEeecCCcCceeeeeecc
Confidence            33444444 46677888877766544443   2222334444555544433       5699999999999999999866


Q ss_pred             -CceEEEEEeCCeEEEEE----------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387          176 -SEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (298)
Q Consensus       176 -~~v~~v~~~~~~l~v~~----------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~  244 (298)
                       ..+..+..+.+.++.|+          |.=|+|||++.++.+.-+.-+..| ..+.|.|.-...+.+  .+..|...+-
T Consensus       217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V--~S~sGq~q~v  293 (1118)
T KOG1275|consen  217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV--TSQSGQFQFV  293 (1118)
T ss_pred             ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE--Eecccceeec
Confidence             47888889999888875          246899999988877666655444 344555554334444  5777888886


Q ss_pred             E---cCCcceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          245 H---YASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       245 ~---~~~~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      |   +.+-....  +.-..+.+..+++|++|..||-|-.+|. |.+|.-.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa~~  342 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWADR  342 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-EeeecCC
Confidence            6   22222222  2223445999999999999999999999 9999833

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.16  E-value=1.7e-05  Score=75.94  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=124.4

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCce-EEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE-IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~  156 (298)
                      .++|...|+.+.|++.. ..||+.+.+. +-.|++..... .+.... .......+.|.. +++.+|..-        .+
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlassh--------g~  180 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSH--------GN  180 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhcc--------CC
Confidence            37888899999999865 5889999887 55999977553 333222 233445566653 455555443        36


Q ss_pred             eEEEEeCCCCc-EEEEeecC-CceEEEEEeCC----eEEEEECCeEEEEEcCCCeEE-EEEeccCCCcceEEEEeCCCCe
Q 022387          157 KVMIWDDHQSR-CIGELSFR-SEVRSVKLRRD----RIIVVLEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       157 ~v~iWD~~~~~-~~~~~~~~-~~v~~v~~~~~----~l~v~~~~~I~iwd~~~~~~i-~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      .|++||.+.+. .+..++.+ ..|..+.|++.    .+....+++|++||..+.... ....+...++..-.+-+-+++.
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence            69999999865 34445443 45666777652    333345799999998543221 1222334455555566666655


Q ss_pred             EEEEecCCCceEEEEEcC-----------CcceEeecccccceeEEEECCCC----------CEEEEEeCCCCEEEEEEC
Q 022387          230 VLVCPGLQKGQVRVEHYA-----------SKRTKFIMAHDSRIACFALTQDG----------QLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~-----------~~~~~~~~~H~~~V~~l~fspdg----------~~lAt~S~Dgt~IrIWd~  288 (298)
                      .+-. --.+..|-+++-+           ..++.+|.+|+..|-..-|-..+          -.|+|=|.|.+ +|+|-+
T Consensus       261 ~~mp-~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-lrlWpI  338 (1081)
T KOG0309|consen  261 CIMP-MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-LRLWPI  338 (1081)
T ss_pred             Eecc-ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-eEeeec
Confidence            5542 2222244443321           23467999999988666554322          37999999999 999987


Q ss_pred             CC
Q 022387          289 LD  290 (298)
Q Consensus       289 ~t  290 (298)
                      .+
T Consensus       339 ~~  340 (1081)
T KOG0309|consen  339 DS  340 (1081)
T ss_pred             cH
Confidence            64

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.15  E-value=0.0018  Score=67.41  Aligned_cols=195  Identities=9%  Similarity=0.068  Sum_probs=111.8

Q ss_pred             EEEEEcCC-CCEEEEEcC-CeEEEEEcCCCceEEEEeeecC------------CceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           89 LHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFERG------------GGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        89 ~~v~fs~d-g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ..++++++ |.++++-+. +.|++|+.+.............            .....+.+..+++.++++..+      
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC------
Confidence            46788875 555556555 5578888764322111110000            012334444455555555422      


Q ss_pred             CCeEEEEeCCCCcEEEEeec------------------CCceEEEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEec
Q 022387          155 LNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIET  212 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~------------------~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~  212 (298)
                      .+.|+++|..++.. .++..                  -.....+++++  ..+.++.  ++.|++||..++.. ..+.+
T Consensus       645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~~~~G  722 (1057)
T PLN02919        645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-RVFSG  722 (1057)
T ss_pred             CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-EEEec
Confidence            36789999877543 22211                  01234677776  3455553  47999999876653 23321


Q ss_pred             cC---------------CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeec----------------------
Q 022387          213 IA---------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----------------------  255 (298)
Q Consensus       213 ~~---------------~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~----------------------  255 (298)
                      ..               .....+++++++  ..|.++.+.++.|++|+..+.....+.                      
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG--~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDL--KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCC--CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            10               011124555544  433334788899999998754322111                      


Q ss_pred             ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       256 ~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      ..-.....|+|+++|.++++-+.+++ |++||..++.+.
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~  838 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVT  838 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEE
Confidence            01123578999999999999999998 999999887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.14  E-value=0.001  Score=61.27  Aligned_cols=181  Identities=11%  Similarity=0.028  Sum_probs=104.5

Q ss_pred             CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEE----EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe
Q 022387           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVV----EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (298)
Q Consensus        98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~  172 (298)
                      ..++.+.. +.+..||.++++.++....  .......    ......+.+++..       .++.+..+|.++++.+.+.
T Consensus       146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~--~~~~~~~~~~~sp~~~~~~v~~~~-------~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       146 GLVVVRTNDGRLTALDAATGERLWTYSR--VTPALTLRGSASPVIADGGVLVGF-------AGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEEEEECCCCeEEEEEcCCCceeeEEcc--CCCceeecCCCCCEEECCEEEEEC-------CCCEEEEEEccCCCEeeee
Confidence            34455544 4477888888877666553  1111100    0001123333333       4578999999998876544


Q ss_pred             ecCCc-----------e-EEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          173 SFRSE-----------V-RSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       173 ~~~~~-----------v-~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      .....           + .......+.+++.. ++.+..||..+++.+.+.... . .....+  . ++.+++  ++.+|
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~--~-~~~vyv--~~~~G  289 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV--D-DNRLYV--TDADG  289 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE--e-CCEEEE--ECCCC
Confidence            32110           0 11223455555554 689999999999887766531 1 111122  2 224444  57889


Q ss_pred             eEEEEEcCCcceE-eeccc-ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          240 QVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       240 ~v~i~~~~~~~~~-~~~~H-~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+..+|..+.... ..... ...+.+...  .+.+|.+++.||. |.+||..+|+.+.++
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDGSFVARL  346 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCCCEEEEE
Confidence            9999888766433 33211 112222222  3678888999999 999999999998664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.13  E-value=1.9e-05  Score=67.10  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce--EeecccccceeEEEECCC-C
Q 022387          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQD-G  270 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~--~~~~~H~~~V~~l~fspd-g  270 (298)
                      +..++|+++..+.+..-  +..-..+.+++.+|..+.+++.|+.||.+-+||......  ..+++|+.+|+.|-|+|. +
T Consensus       159 d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             cceeeeccccccccccc--ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence            55666666433322111  111112334444444344444599999999999987643  378999999999999974 7


Q ss_pred             CEEEEEeCCCCEEEEEECCC
Q 022387          271 QLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..|.|+|+||. +--||..+
T Consensus       237 ~~Lft~sedGs-lw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCSEDGS-LWHWDAST  255 (319)
T ss_pred             hheeEecCCCc-EEEEcCCC
Confidence            89999999999 77888653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.11  E-value=0.00011  Score=63.54  Aligned_cols=192  Identities=14%  Similarity=0.075  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec---CCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF---RCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..++.|++-|+-++++..+| +-+-+......+..... ..+...+....|   +++.+.+.+       +|+.+.-||.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGg-------DD~~l~~~D~  195 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGG-------DDGSLSCWDI  195 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecC-------CCceEEEEEe
Confidence            46788999999899888766 44222222222221111 134444444443   344444433       5799999999


Q ss_pred             CC-CcEEEE--eecCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCe-EEEEEeccCCCcceEEEEeCCC--CeEEEE
Q 022387          164 HQ-SRCIGE--LSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVG--SLVLVC  233 (298)
Q Consensus       164 ~~-~~~~~~--~~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~-~i~~~~~~~~~~~~~~~s~~~d--~~~la~  233 (298)
                      +- +..+..  ..+..-|.++.-++.   .++++. +..|++||.+++. ++..   .....++..|..+|.  +.+|+ 
T Consensus       196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---~~v~GGVWRi~~~p~~~~~lL~-  271 (339)
T KOG0280|consen  196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---AKVGGGVWRIKHHPEIFHRLLA-  271 (339)
T ss_pred             cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---CccccceEEEEecchhhhHHHH-
Confidence            83 333322  234456888877654   444443 5899999998643 3322   222245666655553  23444 


Q ss_pred             ecCCCceEEE--EEcCCc---ceEeecccccceeEEEECCCCCEEEEEeC-CCCEEE-EEECCCCc
Q 022387          234 PGLQKGQVRV--EHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVR-IFNTLDGT  292 (298)
Q Consensus       234 sGs~dg~v~i--~~~~~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~-Dgt~Ir-IWd~~tg~  292 (298)
                      ++..+|.-.+  -+-..+   .....+.|.+-+..-.|.....+|||+|. |+. |+ +|-..++.
T Consensus       272 ~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~-~~~~Wl~~t~~  336 (339)
T KOG0280|consen  272 ACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK-IRQLWLHITGE  336 (339)
T ss_pred             HHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc-eeeeeeeccCC
Confidence            3666664333  221122   23356778877777778655678999875 666 66 88766653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=8.5e-06  Score=75.61  Aligned_cols=162  Identities=15%  Similarity=0.185  Sum_probs=103.7

Q ss_pred             CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC-------cEEEEee-cCCceEEEEEeCCe-EEEEECCeEEE
Q 022387          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVVLEQKIFV  198 (298)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~-------~~~~~~~-~~~~v~~v~~~~~~-l~v~~~~~I~i  198 (298)
                      ..+..+...-+.+.++.++       .|++||+|.++..       .|..+++ +..+|..+.|-.+. -++.+++.|++
T Consensus       736 ~~iRai~AidNENSFiSAS-------kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHl  808 (1034)
T KOG4190|consen  736 EKIRAIAAIDNENSFISAS-------KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHL  808 (1034)
T ss_pred             HHhHHHHhcccccceeecc-------CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCccee
Confidence            3344444344455666655       7899999997641       1222222 33578888887654 55667899999


Q ss_pred             EEcCCCeEEEEEec-c-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eee-----cccccceeEEEECCCC
Q 022387          199 YNFADLKLLHQIET-I-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI-----MAHDSRIACFALTQDG  270 (298)
Q Consensus       199 wd~~~~~~i~~~~~-~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~-----~~H~~~V~~l~fspdg  270 (298)
                      ||---++++..+.. . ...++.+..-.+-+..++.+.++...+|++.|...... ..+     .+-++-+++++..+.|
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence            99866665543321 1 12222232222222234443358889999987664331 122     3445679999999999


Q ss_pred             CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          271 QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++||.+=..|+ |-+-|.++|+++..+
T Consensus       889 N~lAa~LSnGc-i~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  889 NKLAAALSNGC-IAILDARNGKVINSW  914 (1034)
T ss_pred             chhhHHhcCCc-EEEEecCCCceeccC
Confidence            99999988999 999999999988643

>smart00320 WD40 WD40 repeats

Probab=98.02  E-value=1.3e-05  Score=46.40  Aligned_cols=36  Identities=28%  Similarity=0.600  Sum_probs=32.7

Q ss_pred             eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       251 ~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      ...+..|...|++++|++++.++++++.|+. |++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            4467789999999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.99  E-value=0.0071  Score=51.49  Aligned_cols=177  Identities=15%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE-EEEeC
Q 022387          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-VKLRR  185 (298)
Q Consensus       107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~  185 (298)
                      .+..||..+++.++...+.....-...........+++.+       .++.|..||..+|+.+.++.....+.. .....
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~   76 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG   76 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence            3567777777776666541001111111222444555554       468999999999999888877554322 35566


Q ss_pred             CeEEEEE-CCeEEEEEcCCCeEEEEE-eccCCCc---ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eeccccc
Q 022387          186 DRIIVVL-EQKIFVYNFADLKLLHQI-ETIANPK---GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDS  259 (298)
Q Consensus       186 ~~l~v~~-~~~I~iwd~~~~~~i~~~-~~~~~~~---~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~  259 (298)
                      +.+++.. ++.|..+|..+++.+.++ .......   ........+ +.+++  +..+|.|...|.+++.+. ....+..
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYV--GTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEE--EETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEE--EeccCcEEEEecCCCcEEEEeecCCC
Confidence            7777766 579999999999999885 4332111   122333332 23443  466888988887766543 3333321


Q ss_pred             c----------eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          260 R----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       260 ~----------V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      .          +..-....++ .+..++.++.++.+ |+.+|+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w  197 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW  197 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence            1          1222233355 55556667754666 999998664

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.99  E-value=0.0024  Score=58.81  Aligned_cols=184  Identities=14%  Similarity=0.135  Sum_probs=104.0

Q ss_pred             CCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387           97 HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (298)
Q Consensus        97 g~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (298)
                      +..+.+++.+ .+.-+|..+++.++...+  ...+... .....+.+++.+       .++.+..+|..+++.+.+....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~--~~~~~~~-p~v~~~~v~v~~-------~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDL--DERLSGG-VGADGGLVFVGT-------EKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecC--CCCcccc-eEEcCCEEEEEc-------CCCEEEEEECCCCcEeeeeccC
Confidence            5567777665 466888888888777765  2222111 112344455544       4688999999999988776665


Q ss_pred             CceEE-EEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCc-----ceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387          176 SEVRS-VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (298)
Q Consensus       176 ~~v~~-v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~  248 (298)
                      ..+.+ .....+.+++.. ++.|..||..+++.+.+++......     ....+. +  +.+++  +..+|.+...|..+
T Consensus       135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~--~~v~~--~~~~g~v~ald~~t  209 (377)
T TIGR03300       135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D--GGVLV--GFAGGKLVALDLQT  209 (377)
T ss_pred             ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C--CEEEE--ECCCCEEEEEEccC
Confidence            54433 223445555544 5899999999999888776532211     111121 2  23333  67778887777655


Q ss_pred             cceE-eeccc-c---c---ceeEEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          249 KRTK-FIMAH-D---S---RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       249 ~~~~-~~~~H-~---~---~V~~l~fsp--dg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      .... ..... .   .   .+..+.-+|  .+..+..++.+|. ++.||.++|+.+.+
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~  266 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWK  266 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEe
Confidence            4332 21100 0   0   000000011  2345555666777 77788777776654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.99  E-value=0.0049  Score=54.02  Aligned_cols=194  Identities=13%  Similarity=0.194  Sum_probs=116.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEE-------------eeecCCceEEEE--EecCCCEEEEEeCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVE--MLFRCNILALVGGGPDP  151 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  151 (298)
                      .|..+..-++-+.|++=+++.+.+++++........             .....+++...+  -...+....++.     
T Consensus        37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-----  111 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-----  111 (275)
T ss_pred             eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-----
Confidence            499999999888877777788889988654332210             110122333333  112232333333     


Q ss_pred             CCCCCeEEEEeCCCC-----cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC------------
Q 022387          152 QYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA------------  214 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~-----~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~------------  214 (298)
                        ..++|.+|.+...     +...++.....+..+.|.++.+.++..+...+.|+.++....-+....            
T Consensus       112 --~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  112 --VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             --ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence              3478999887652     567788889999999999999999999999999998665533322111            


Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .+.....+   +++.+|++  ..+-.+. -+...+... ..-.-...+.++++.  ..||...+. +. |-||++.+|++
T Consensus       190 ~~~~~~~~---~~~e~Ll~--~~~~g~f-v~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~~l  259 (275)
T PF00780_consen  190 KPLGIFQL---SDNEFLLC--YDNIGVF-VNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETGEL  259 (275)
T ss_pred             CceEEEEe---CCceEEEE--ecceEEE-EcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CE-EEEEECcCCcE
Confidence            12222222   22356653  3332222 333333222 111223467777774  357776664 55 99999999999


Q ss_pred             EEec
Q 022387          294 LQEG  297 (298)
Q Consensus       294 l~~~  297 (298)
                      ++++
T Consensus       260 vQ~i  263 (275)
T PF00780_consen  260 VQTI  263 (275)
T ss_pred             EEEE
Confidence            8764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.98  E-value=1.6e-05  Score=47.83  Aligned_cols=32  Identities=19%  Similarity=0.487  Sum_probs=28.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYN  112 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~  112 (298)
                      ...|...|++|+|+|++.+||+|+.|+ ++|||
T Consensus         7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357888999999999999999999855 88997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.97  E-value=0.0092  Score=51.47  Aligned_cols=190  Identities=13%  Similarity=0.061  Sum_probs=111.3

Q ss_pred             EEEEcC-CCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           90 HISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        90 ~v~fs~-dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      ++.|.+ +|.++.+... +.|..|+.++..... ...  .. ...+.+......++++..        +.+.++|..+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTSEEEEEET--------TCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCCEEEEEEc--------CceEEEecCCCc
Confidence            578887 7777777765 446677877765433 332  23 444444423355555552        446777998886


Q ss_pred             EEEEeec------CCceEEEEEeCCeEEEEEC-----------CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          168 CIGELSF------RSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       168 ~~~~~~~------~~~v~~v~~~~~~l~v~~~-----------~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      ....+..      ......+.+.++..+..++           +.|..++.. ++. ..+........-+++++++  ..
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg--~~  147 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDG--KT  147 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTS--SE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcc--hh
Confidence            5444433      1245668888765444432           246666655 443 3333222223456666654  44


Q ss_pred             EEEecCCCceEEEEEcCC--cce---Eee---cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          231 LVCPGLQKGQVRVEHYAS--KRT---KFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~--~~~---~~~---~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.++-+..+.|..+++..  ..+   ..+   ..-.+..-.|++..+|++.++.-..+. |.++|.+ |+++.++
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREI  220 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEE
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEE
Confidence            443467788888877642  212   122   222234889999999999998877787 9999977 9888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.96  E-value=0.0006  Score=60.20  Aligned_cols=152  Identities=11%  Similarity=0.142  Sum_probs=82.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|..+-|+-.-+++++.+.|.-..|.+-... .+-...+  ....  ....++-. .+.++.-      .+.|.+
T Consensus       111 ~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~--t~~~~d~~-~~fvGd~------~gqvt~  179 (404)
T KOG1409|consen  111 LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPA--SALQFDAL-YAFVGDH------SGQITM  179 (404)
T ss_pred             hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--eccC--CCCceeeE-EEEeccc------ccceEE
Confidence            456779999999988888888777665678764322 2211111  0000  00011111 3333321      233333


Q ss_pred             E--eCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          161 W--DDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 W--D~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      -  +...-+.+.++..+ ..+.++.|.+.  .++.+. +..|.+||+... ...+.+..|.+.+........-  ..+. 
T Consensus       180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t--~~l~-  256 (404)
T KOG1409|consen  180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT--RQLI-  256 (404)
T ss_pred             EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh--eeee-
Confidence            3  23334455555544 57888888763  344433 579999999432 3345666666555444333322  3343 


Q ss_pred             ecCCCceEEEEEcC
Q 022387          234 PGLQKGQVRVEHYA  247 (298)
Q Consensus       234 sGs~dg~v~i~~~~  247 (298)
                      |++.||.|.+|+++
T Consensus       257 S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  257 SCGEDGGIVVWNMN  270 (404)
T ss_pred             eccCCCeEEEEecc
Confidence            47889999888843

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.96  E-value=4.8e-05  Score=72.91  Aligned_cols=201  Identities=12%  Similarity=0.113  Sum_probs=129.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEE--EeeecCCceEEEEEecCC--CEEEEEeCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d  155 (298)
                      ++.+-.+.+..+.++|-|+=+|.++.-|+.+-|++....-.+  ..+ .--.++.+.|+.++  .+-++..       ..
T Consensus        19 lsl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~-tpw~vad~qws~h~a~~~wiVst-------s~   90 (1081)
T KOG0309|consen   19 LSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHI-TPWQVADVQWSPHPAKPYWIVST-------SN   90 (1081)
T ss_pred             eEEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeecc-CcchhcceecccCCCCceeEEec-------Cc
Confidence            344455678899999999999999999988888864322111  111 12234555665443  3344444       34


Q ss_pred             CeEEEEeCCC--CcEEEEe--ecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCC
Q 022387          156 NKVMIWDDHQ--SRCIGEL--SFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       156 ~~v~iWD~~~--~~~~~~~--~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      .+..+|++..  .+.|--+  .+...|+.+.|++   +.++.+. +-.+..||++.. .++..+.........+..+.. 
T Consensus        91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-  169 (1081)
T KOG0309|consen   91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-  169 (1081)
T ss_pred             chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-
Confidence            6677899764  2333222  2234678888875   4455544 579999999764 345554443333334444432 


Q ss_pred             CCeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +...+|  .+....|.+||...+  ++..+++|...|+.++|.. -...+.+++.||+ |+.||.....
T Consensus       170 ~p~vla--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt  235 (1081)
T KOG0309|consen  170 DPNVLA--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKST  235 (1081)
T ss_pred             Ccchhh--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccc
Confidence            236666  466668888998754  4668999999999999985 4578889999999 9999988654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=5e-05  Score=66.87  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=89.9

Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeC-CeEEEEE--CCeEEEEEcCCC-----eEEEEEeccCCCcceEEEEeCC
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~l~v~~--~~~I~iwd~~~~-----~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      +..|-+-|++++.. +.|...+.|+++.|+. +.++.++  ++.|..+|++..     .+.+.+- |...+.++.+-.-.
T Consensus       233 sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s  310 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFS  310 (425)
T ss_pred             cceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccc
Confidence            45677778877643 2344566899988876 4454443  589999999643     3333333 33333333333222


Q ss_pred             CCeEEEEecCCCceEEEEEcCCc-c---eEeecccccceeEEEEC--CCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASK-R---TKFIMAHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~-~---~~~~~~H~~~V~~l~fs--pdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      + +.|.+ .+-+|+|.+||.... .   +.+..+|...-.-+-+.  +....++++++|-. .|||.+++|+++.+.
T Consensus       311 ~-q~Lma-S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy-tRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  311 Q-QKLMA-SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY-TRIWSLDSGHLLCTI  384 (425)
T ss_pred             c-ceEee-ccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE-EEEEecccCceeecc
Confidence            2 44443 688999999998643 2   56778885544444443  55667888999998 999999999998763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.91  E-value=0.0028  Score=64.99  Aligned_cols=195  Identities=16%  Similarity=0.180  Sum_probs=113.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC---C----eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           85 PPTLLHISFNQDHGCFAAGTD---H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~---~----gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ...-..|+|-.||.|+|+.+-   .    .+|||+-+ +....+-+- -.+--..++|.+.++.+|.+.--.    ....
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~----~~~~  282 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLP----DRHD  282 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcC----CCcE
Confidence            345668999999999998763   2    37799876 333333221 133345678889999888876321    2344


Q ss_pred             EEEEeCCCCcEEEEeecC-----CceEEEEEeCC--eEEEEECCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCCC-
Q 022387          158 VMIWDDHQSRCIGELSFR-----SEVRSVKLRRD--RIIVVLEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVG-  227 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~-----~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~d-  227 (298)
                      |.+|.- +|....+|...     ..|..+.|+.+  .|++...+.|.+|-..+..  +.+.+.-... .....+.+++. 
T Consensus       283 VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~  360 (928)
T PF04762_consen  283 VVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEK  360 (928)
T ss_pred             EEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCC
Confidence            555653 44445555442     37889999865  5666667789999987754  1122221111 11111334432 


Q ss_pred             -CeEEEEecCCCceEEE----EEcCC-----------------cc--eEee-------------cccccceeEEEECCCC
Q 022387          228 -SLVLVCPGLQKGQVRV----EHYAS-----------------KR--TKFI-------------MAHDSRIACFALTQDG  270 (298)
Q Consensus       228 -~~~la~sGs~dg~v~i----~~~~~-----------------~~--~~~~-------------~~H~~~V~~l~fspdg  270 (298)
                       ..+.+  ...+|.+..    |+...                 ..  ++-|             -.-..+|.+++|++++
T Consensus       361 p~~L~v--~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~  438 (928)
T PF04762_consen  361 PLRLHV--LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN  438 (928)
T ss_pred             CCEEEE--EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence             22222  233333333    22110                 00  0000             1124689999999999


Q ss_pred             CEEEEEeCCCCEEEEEECCC
Q 022387          271 QLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..+|.-..||+ |.+|....
T Consensus       439 ~~~avl~~d~~-l~~~~~~~  457 (928)
T PF04762_consen  439 SRFAVLTSDGS-LSIYEWDL  457 (928)
T ss_pred             CeEEEEECCCC-EEEEEecC
Confidence            88999999999 99998554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=7.5e-06  Score=79.69  Aligned_cols=191  Identities=13%  Similarity=0.142  Sum_probs=124.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      +.+...-+|++|+-+.++|++|+..| +++|++.++........ |+..+..++-+.++..+.+.+..     +.--..+
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~-----S~PlsaL 1171 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSS-----SSPLSAL 1171 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccc-----cCchHHH
Confidence            55667889999999999999999866 88999999876655554 67788888877777777766632     2224689


Q ss_pred             EeCCC-CcEEEEeecCCceEEEEEeC--C-eEEEEECCeEEEEEcCCCeEEEEEecc----CCCcceEEEEeCCCCeEEE
Q 022387          161 WDDHQ-SRCIGELSFRSEVRSVKLRR--D-RIIVVLEQKIFVYNFADLKLLHQIETI----ANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       161 WD~~~-~~~~~~~~~~~~v~~v~~~~--~-~l~v~~~~~I~iwd~~~~~~i~~~~~~----~~~~~~~~~s~~~d~~~la  232 (298)
                      |+... ++..+.+..   -.++.|+.  . ..+.+..+...+||+.+..++.++-..    ........|++.  ..++.
T Consensus      1172 W~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL 1246 (1516)
T ss_pred             hccccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC--cceEe
Confidence            99865 444444433   34555654  2 222333478999999988777764321    111234455554  34443


Q ss_pred             EecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                          .||  .+||..... +..|...+..+.. .|+|.|.-++.-|      -|||++|-+++|+
T Consensus      1247 ----ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS------EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 ----NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS------EIWDMRTFKLLHS 1298 (1516)
T ss_pred             ----eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec------hhhhhHHHHHHhc
Confidence                445  358876543 3344444433332 5999999888765      3899999887765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.89  E-value=0.0021  Score=65.86  Aligned_cols=199  Identities=15%  Similarity=0.136  Sum_probs=115.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEE----EcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....|.++.|-+|..-|..+..+| |.+.    +.+.......-.+  +.++.++.|+++...++++++       +++|
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v--d~GI~a~~WSPD~Ella~vT~-------~~~l  144 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV--DSGILAASWSPDEELLALVTG-------EGNL  144 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE--cCcEEEEEECCCcCEEEEEeC-------CCEE
Confidence            345899999999998888888877 5566    5555555555555  788999999999999999994       4667


Q ss_pred             EEEeCCCCcEEEEeecCC------ceEEEEEeCCeEEE-EECCeEEEEEcCCCeEEEEEecc--CCCcceEEEEeCCCCe
Q 022387          159 MIWDDHQSRCIGELSFRS------EVRSVKLRRDRIIV-VLEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSL  229 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~------~v~~v~~~~~~l~v-~~~~~I~iwd~~~~~~i~~~~~~--~~~~~~~~~s~~~d~~  229 (298)
                      .+-+ ++-..+.+.....      .-.+|-|..+..-. +..++---=.+++.+.. .....  ......+.+++-+||.
T Consensus       145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLSWDDGRVRISWRGDGE  222 (928)
T ss_pred             EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC-ccccCccccCCCceEEEECCCCc
Confidence            6654 3444555544321      22233332211000 00000000000000000 00000  0123568899999999


Q ss_pred             EEEEecC--CC---ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC--CCCEEEEEECCCCcEE
Q 022387          230 VLVCPGL--QK---GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLL  294 (298)
Q Consensus       230 ~la~sGs--~d---g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~--Dgt~IrIWd~~tg~~l  294 (298)
                      ++|++.-  ..   -.++||+.+.....+-..-.+--.+++|.|.|.++|+.-.  +...|-+|. ++|-.-
T Consensus       223 yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh  293 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH  293 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence            9998543  23   4788899875422222223333567899999999999965  333366666 455443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.84  E-value=0.00071  Score=63.71  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCeE--EEEEec-cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCC
Q 022387          195 KIFVYNFADLKL--LHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ  271 (298)
Q Consensus       195 ~I~iwd~~~~~~--i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~  271 (298)
                      .-.+|++...+.  +..... ....+.+|+.+++.  ..++. |..||.|.+||...+. ..+..+.-.++.++|+|+|.
T Consensus       237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E--~kLvl-GC~DgSiiLyD~~~~~-t~~~ka~~~P~~iaWHp~ga  312 (545)
T PF11768_consen  237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE--DKLVL-GCEDGSIILYDTTRGV-TLLAKAEFIPTLIAWHPDGA  312 (545)
T ss_pred             EEEEEEeecCceeEEEEEEEecCCcceEEecCccc--ceEEE-EecCCeEEEEEcCCCe-eeeeeecccceEEEEcCCCc
Confidence            345677644332  211111 23345556665554  66664 8999999999987663 33445566799999999999


Q ss_pred             EEEEEeCCCCEEEEEECCCC
Q 022387          272 LLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       272 ~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      .|+.|+.-|. +.+||+.-.
T Consensus       313 i~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  313 IFVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             EEEEEcCCce-EEEEEeecC
Confidence            9999999998 999998754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.81  E-value=0.0015  Score=63.29  Aligned_cols=198  Identities=12%  Similarity=0.082  Sum_probs=123.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCC----------CEEEEEeCCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC----------NILALVGGGPDPQYPLN  156 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~d~  156 (298)
                      .-.++.|+|.| +||-|+..-|.|-|..+.+.+...+. |...+..+.|.+.+          ..+.++++.     ..|
T Consensus        17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~~G   89 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----ISG   89 (1062)
T ss_pred             cccccccCccc-eEEEecCceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEecc-----ccC
Confidence            45678899987 68999998888988888777767766 67788888886421          123344432     468


Q ss_pred             eEEEEeCCCCcEEEEeecCC-ceEEEEEe------CCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC-C
Q 022387          157 KVMIWDDHQSRCIGELSFRS-EVRSVKLR------RDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-G  227 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~-~v~~v~~~------~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~-d  227 (298)
                      .|.+||+..+..+..++++. ++..++|-      ++.+++.. ...|.+|+..+++.+.++.-...+..  +|..|| |
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs--~f~~DPfd  167 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS--CFRVDPFD  167 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee--eeeeCCCC
Confidence            99999999988888888764 66666652      24455444 47999999999999887765433333  344443 2


Q ss_pred             CeEEEEecCCCceEEE-EEcCCcc-------eEeeccccc-------------------------ceeEEEECCCCCEEE
Q 022387          228 SLVLVCPGLQKGQVRV-EHYASKR-------TKFIMAHDS-------------------------RIACFALTQDGQLLA  274 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i-~~~~~~~-------~~~~~~H~~-------------------------~V~~l~fspdg~~lA  274 (298)
                      -..+.+. +..|.+.+ .+...++       ...-..|..                         .....+|+|.-+.+.
T Consensus       168 ~rh~~~l-~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  168 SRHFCVL-GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             cceEEEE-ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            2233332 44556665 4433211       111112221                         112356788754433


Q ss_pred             EEeCCCCEEEEEECCCCcEEE
Q 022387          275 TSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       275 t~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      -.-.... +.|+|++-..++.
T Consensus       247 fi~~pre-llv~dle~~~~l~  266 (1062)
T KOG1912|consen  247 FITFPRE-LLVFDLEYECCLA  266 (1062)
T ss_pred             EEEeccc-eEEEcchhhceeE
Confidence            3345777 8899988666553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0027  Score=61.74  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=99.6

Q ss_pred             CCCCCCeEEEEEcCC-------------CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecC----CCEEE
Q 022387           82 SSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNILA  143 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d-------------g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  143 (298)
                      ..|++.|.-..+.-.             |+++|++++|| +.|-.+.+.+......|  ...+..+.+.++    .....
T Consensus        55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec--CCcceeEEeccchhhhhhhhe
Confidence            455556665555544             99999999988 77888888777666776  567777877665    22233


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCC---CcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCC----
Q 022387          144 LVGGGPDPQYPLNKVMIWDDHQ---SRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP----  216 (298)
Q Consensus       144 ~~~~~~~~~~~d~~v~iWD~~~---~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~----  216 (298)
                      ++| |     ..| +.+..-+-   ...+.--...++|.++.|..+.++.+.+-.|++||+...+.+..++.....    
T Consensus       133 v~G-G-----~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e  205 (846)
T KOG2066|consen  133 VSG-G-----MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPE  205 (846)
T ss_pred             eec-C-----cce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcc
Confidence            333 3     234 66665432   122212234468999999999999999989999999888877776543211    


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcC
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~  247 (298)
                      ..-+.+.+.++..+++  |-.| +|+|..++
T Consensus       206 ~fpphl~W~~~~~LVI--GW~d-~v~i~~I~  233 (846)
T KOG2066|consen  206 LFPPHLHWQDEDRLVI--GWGD-SVKICSIK  233 (846)
T ss_pred             cCCCceEecCCCeEEE--ecCC-eEEEEEEe
Confidence            2234556665555554  5544 56664444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.77  E-value=0.027  Score=50.63  Aligned_cols=111  Identities=10%  Similarity=0.068  Sum_probs=63.1

Q ss_pred             EEEEcCCCCEEEEEc------C-----CeEEEEEcCCCceEEEEeeecCC-ceEE------EEEecCCCEEEEEeCCCCC
Q 022387           90 HISFNQDHGCFAAGT------D-----HGFRIYNCDPFREIFRRDFERGG-GIGV------VEMLFRCNILALVGGGPDP  151 (298)
Q Consensus        90 ~v~fs~dg~~lasgs------~-----~gi~vw~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~  151 (298)
                      .+..+|||+.++++.      .     |-+.+||.++........+. .+ ...+      ..++.++..+.+..-.   
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP-~k~R~~~~~~~~~~~ls~dgk~~~V~N~T---  115 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP-PKPRAQVVPYKNMFALSADGKFLYVQNFT---  115 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET-TS-B--BS--GGGEEE-TTSSEEEEEEES---
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC-CcchheecccccceEEccCCcEEEEEccC---
Confidence            467899999888643      1     22569999998776666652 22 2211      1233344444333211   


Q ss_pred             CCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC-eEEEEECCeEEEEEcC-CCeE
Q 022387          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLEQKIFVYNFA-DLKL  206 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-~l~v~~~~~I~iwd~~-~~~~  206 (298)
                        -...|.|-|+..++.+.++...+-..-.-..++ +..+|.||++.-..+. +++.
T Consensus       116 --Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen  116 --PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             --SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             --CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence              234578888888888888887664433333333 3444556777777774 4444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=0.00015  Score=69.45  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEE-------------EEeee-cCCceEEEEEecCCCEEEEEeCCC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF-------------RRDFE-RGGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      .....|++|+....|||+|+.+| ++|..+++...-.             ...+. |++.+..+.|.-....+.++.   
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD---   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD---   90 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC---
Confidence            34788999999999999999988 5688665432110             01111 566666777654444443333   


Q ss_pred             CCCCCCCeEEEEeCCCCc
Q 022387          150 DPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~  167 (298)
                          .+|-|.+|=+-+++
T Consensus        91 ----t~GlIiVWmlykgs  104 (1189)
T KOG2041|consen   91 ----TSGLIIVWMLYKGS  104 (1189)
T ss_pred             ----CCceEEEEeeeccc
Confidence                46889999876654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.77  E-value=0.032  Score=52.34  Aligned_cols=156  Identities=10%  Similarity=0.047  Sum_probs=92.7

Q ss_pred             ceEEEEEecCCCE-EEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEc
Q 022387          129 GIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNF  201 (298)
Q Consensus       129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~  201 (298)
                      ....-.|+++++. +++.+-..    ....|.++|+.+++...-..+...+....|+++  .++...+    ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            3445567888874 55544321    135799999988876554455555666678775  4544432    47888998


Q ss_pred             CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC
Q 022387          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (298)
Q Consensus       202 ~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D  279 (298)
                      .+++. +.+..+........++  +|+..|++.....|.  |.+.+..++....+......  ...|||||++||-.+..
T Consensus       265 ~~g~~-~~LT~~~~~d~~p~~S--PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        265 NTKTL-TQITNYPGIDVNGNFV--EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCCcE-EEcccCCCccCccEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcC
Confidence            76653 3444332222223444  455666654445554  55566666655433322111  24899999999888764


Q ss_pred             C--------CEEEEEECCCCcE
Q 022387          280 G--------TLVRIFNTLDGTL  293 (298)
Q Consensus       280 g--------t~IrIWd~~tg~~  293 (298)
                      .        ..|.+.|+.+|..
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCe
Confidence            2        2378888887753

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.0093  Score=55.74  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=32.8

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+++..|++||+|+++|--..+|. +.|....-.+++.||
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEe
Confidence            368999999999999999999999 888887666666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.72  E-value=0.0083  Score=55.68  Aligned_cols=199  Identities=11%  Similarity=0.107  Sum_probs=121.4

Q ss_pred             CCeEEEEEcCCC--CEEEEEc------CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC----CCCCCC
Q 022387           86 PTLLHISFNQDH--GCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG----GPDPQY  153 (298)
Q Consensus        86 ~~V~~v~fs~dg--~~lasgs------~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  153 (298)
                      ..|+..+|+|.|  .-||.=.      ...++||.+.....+....+- +-.-..+.|...++.+.+..-    +.-.-|
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeeccccee
Confidence            468888888864  3455422      234788988766555555441 222334445555554433221    111122


Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceEEEEEe--CCeEEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLR--RDRIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~--~~~l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      ...++.|.+++...+-.+....++|..++|.  .++++++..   -.+.++|++.. +.  +.........+.|+++.  
T Consensus       253 gesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~--  327 (561)
T COG5354         253 GESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHE--  327 (561)
T ss_pred             ccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcc--
Confidence            3466888888765554455556789999995  467777653   68999999865 33  33344556677888876  


Q ss_pred             eEEEEecCC--CceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEE------eCCCCEEEEEECCCCcE
Q 022387          229 LVLVCPGLQ--KGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATS------STKGTLVRIFNTLDGTL  293 (298)
Q Consensus       229 ~~la~sGs~--dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~------S~Dgt~IrIWd~~tg~~  293 (298)
                      .+++++|-.  .|.+.+|+...+-..  .+.+  ...+-+.|+|||.++-+.      -.|.. |+|||+...+.
T Consensus       328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~-i~l~~v~g~~~  399 (561)
T COG5354         328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNS-IKLWDVYGAKV  399 (561)
T ss_pred             cEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcc-eEEEEecCchh
Confidence            444444544  578888887665332  3332  345667899999988776      23677 99999876543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.71  E-value=0.001  Score=59.71  Aligned_cols=153  Identities=12%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCEEEEEcC-CeEEEEEcCCCc----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      +..+..+++|++||++.. +...+++.....    ..-...+ ......+.....+...++.-..|     +...+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkag-----D~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAG-----DVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecC-----Cceeeeeec
Confidence            445667888888888876 554466553322    1112222 12222333333344444444444     346678888


Q ss_pred             CCCCcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      ...+.+...+.+-+.++.|.++++.-.+++   +++|++-....--.+.+|-- |..-+..+++-.+   ..|+ ||+.|
T Consensus       139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~---~~Ll-S~sGD  214 (390)
T KOG3914|consen  139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN---YLLL-SGSGD  214 (390)
T ss_pred             ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC---ceee-ecCCC
Confidence            877777777788888999999986544443   36999987766555666543 6666666666543   4455 69999


Q ss_pred             ceEEEEEcCCcc
Q 022387          239 GQVRVEHYASKR  250 (298)
Q Consensus       239 g~v~i~~~~~~~  250 (298)
                      ++|++||+.+.+
T Consensus       215 ~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  215 KTLRLWDITSGK  226 (390)
T ss_pred             CcEEEEecccCC
Confidence            999999988643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00019  Score=67.88  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeeccccccee-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~-~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ....+-+.|.-.++|. +..+|.|.+..++-.++.++.-|...|+ ++||.|||++||.|=.||+ |+|-|+.+|..++.
T Consensus        22 ~i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence            3445556666678885 8999999999888778889988888888 9999999999999999999 99999999988876

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.58  E-value=0.033  Score=49.42  Aligned_cols=181  Identities=17%  Similarity=0.205  Sum_probs=108.7

Q ss_pred             EEEcCCCCEEEEEc-----CCe-EEEEEcC-CCceEEEEeeecCCceE--EEEEecCCCEEEEEeCCCCCCC--------
Q 022387           91 ISFNQDHGCFAAGT-----DHG-FRIYNCD-PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPDPQY--------  153 (298)
Q Consensus        91 v~fs~dg~~lasgs-----~~g-i~vw~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------  153 (298)
                      ..||+||++|.+.=     ..| |-|||.. ..+++-...   .+++.  -+.+.+++..|+++.||-...-        
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~---s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN  132 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP---SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN  132 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec---CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence            67999999988753     245 4599998 444443333   34443  3445677778888877643210        


Q ss_pred             ---CCCeEEEEeCCCCcEEEEeecC-----CceEEEEEeCCeEEEEEC----------CeEEEEEcCCCeEEEEEec---
Q 022387          154 ---PLNKVMIWDDHQSRCIGELSFR-----SEVRSVKLRRDRIIVVLE----------QKIFVYNFADLKLLHQIET---  212 (298)
Q Consensus       154 ---~d~~v~iWD~~~~~~~~~~~~~-----~~v~~v~~~~~~l~v~~~----------~~I~iwd~~~~~~i~~~~~---  212 (298)
                         .+-.+.+-|..+++.+......     -.+.-+++..+..++...          --|-+++.  ++.+.-+..   
T Consensus       133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~  210 (305)
T PF07433_consen  133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEE  210 (305)
T ss_pred             hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChH
Confidence               1233666778888877765542     257777887776555431          13444443  222333332   


Q ss_pred             ----cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC
Q 022387          213 ----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (298)
Q Consensus       213 ----~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt  281 (298)
                          -.+++++++++.+  +.++++++=..|.+.+||..+..+.... .-..+..|+-.+++ +++|.+ -|.
T Consensus       211 ~~~~l~~Y~gSIa~~~~--g~~ia~tsPrGg~~~~~d~~tg~~~~~~-~l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  211 QWRRLNGYIGSIAADRD--GRLIAVTSPRGGRVAVWDAATGRLLGSV-PLPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             HHHhhCCceEEEEEeCC--CCEEEEECCCCCEEEEEECCCCCEeecc-ccCceeeeeecCCc-eEEeCC-Ccc
Confidence                2245666666654  4778776777788888998887654221 22356777777777 666665 454

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.0073  Score=56.80  Aligned_cols=162  Identities=15%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ..+.+++||+|+++++.+++...|+.....+..   .+   +......|.. .+.+|+..       ..++|+|+.--+.
T Consensus        34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~~---G~g~~~vw~~-~n~yAv~~-------~~~~I~I~kn~~~   99 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---AF---GSGLSFVWSS-RNRYAVLE-------SSSTIKIYKNFKN   99 (443)
T ss_dssp             --SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---EE---EE-SEEEE-T-SSEEEEE--------TTS-EEEEETTEE
T ss_pred             CCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---cc---CceeEEEEec-CccEEEEE-------CCCeEEEEEcCcc
Confidence            466899999999999988888888885443331   11   1122234444 45566666       3477998632222


Q ss_pred             cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEc
Q 022387          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (298)
Q Consensus       167 ~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~  246 (298)
                      .....+.....+..+.. +..+.+..++.|.+||+.+++.++++...    .+-.+-+++++.++|.. + +..+.|.+.
T Consensus       100 ~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~-t-~~~i~il~~  172 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALV-T-KDSIYILKY  172 (443)
T ss_dssp             -TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE---S-SEEEEEE
T ss_pred             ccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEE-e-CCeEEEEEe
Confidence            22223333333333333 66677777788999999999999998843    13455666677888863 3 345666554


Q ss_pred             CCc------------ceEeecccccceeEEEECCC
Q 022387          247 ASK------------RTKFIMAHDSRIACFALTQD  269 (298)
Q Consensus       247 ~~~------------~~~~~~~H~~~V~~l~fspd  269 (298)
                      +..            ....+..-...|.+.+|..|
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            443            33333333566777777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.56  E-value=0.016  Score=57.79  Aligned_cols=131  Identities=18%  Similarity=0.274  Sum_probs=88.0

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCc--eEEEEEe-------CCeEEEEE-CCeEEEEEcCCC--eEEEEEeccC--CCcce
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSE--VRSVKLR-------RDRIIVVL-EQKIFVYNFADL--KLLHQIETIA--NPKGL  219 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~--v~~v~~~-------~~~l~v~~-~~~I~iwd~~~~--~~i~~~~~~~--~~~~~  219 (298)
                      .++.|.-.|+++|+.+.++..+..  |..+.-.       +...+++. ++.+..||.+-.  +++.. +.+.  .....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~F  580 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNF  580 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cccccccCCCc
Confidence            357899999999999999988753  4554432       23444444 589999998642  23321 1111  11122


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .+++...+| .||+ |+.+|.|++++...+..+ .|.+-..+|..|+.+.||++++..+ +.. +-|.+..
T Consensus       581 s~~aTt~~G-~iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ty-LlLi~t~  647 (794)
T PF08553_consen  581 SCFATTEDG-YIAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTY-LLLIDTL  647 (794)
T ss_pred             eEEEecCCc-eEEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cce-EEEEEEe
Confidence            344555554 4554 999999999986555544 5677789999999999999888776 555 6677753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.0023  Score=62.08  Aligned_cols=157  Identities=8%  Similarity=0.125  Sum_probs=92.5

Q ss_pred             CCCCCeEEEEEcC------CC-----C-EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec---CC-CEEEEE
Q 022387           83 SPPPTLLHISFNQ------DH-----G-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF---RC-NILALV  145 (298)
Q Consensus        83 ~~~~~V~~v~fs~------dg-----~-~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~  145 (298)
                      .|...|+.|.|.|      ++     . +||++...| |.+||............ +...+.-++|.+   .. +.++..
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEe
Confidence            3446788888865      11     1 466666655 88999877654333332 355555555533   33 334444


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE-EEEeC---C-----------------------------------
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-VKLRR---D-----------------------------------  186 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~---~-----------------------------------  186 (298)
                      .       ...++.+|+..+|+..-...+...+.+ +.+.|   .                                   
T Consensus       132 h-------~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~  204 (1062)
T KOG1912|consen  132 H-------GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH  204 (1062)
T ss_pred             c-------CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence            4       247899999988877665554433322 33322   1                                   


Q ss_pred             ----------------------------------------eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC
Q 022387          187 ----------------------------------------RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       187 ----------------------------------------~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                                                              .+++.....+.++|++-..++..+.........+.+-|++
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~  284 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP  284 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence                                                    2222333445555655555555555444445566777777


Q ss_pred             CCeEEEEecCCCceEEEEEcCC
Q 022387          227 GSLVLVCPGLQKGQVRVEHYAS  248 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~  248 (298)
                      ....|.+ +..||.+.+|..+.
T Consensus       285 ~rd~Lfc-lH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  285 RRDALFC-LHSNGRLTIRVRKE  305 (1062)
T ss_pred             CcceEEE-EecCCeEEEEEeec
Confidence            7666765 89999999998764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.00024  Score=66.23  Aligned_cols=199  Identities=13%  Similarity=0.212  Sum_probs=116.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCeEEEEEcCCC-------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs-~~gi~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      .+|...|+.++--.+.+-+++++ ++++++|.+.+.       .+.++... |...+..+.+.-+-++++.         
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S---------  801 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS---------  801 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee---------
Confidence            46667787776444444455555 588999988543       24444432 5666666666555554444         


Q ss_pred             CCCeEEEEeCCCCcEEEEeec------CCceEEEEEeCCeEEEE--E-CCeEEEEEcCCCeEEEEEeccC--CCc-ceEE
Q 022387          154 PLNKVMIWDDHQSRCIGELSF------RSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIA--NPK-GLCA  221 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~------~~~v~~v~~~~~~l~v~--~-~~~I~iwd~~~~~~i~~~~~~~--~~~-~~~~  221 (298)
                      .|+.|++||.--++.+..+.-      .+.|.++.--...++++  + ..+|+++|-+..+-...++...  .|. ..-+
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            357799999766655443221      12355544322333333  2 4799999999887777776542  232 2224


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEE-EECCCCcE
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGTL  293 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrI-Wd~~tg~~  293 (298)
                      +...+.|+.+|+ |-.+|.|.+-|..++.+. ..+.-.-..-.++ .|..+.||..-.|.+ +-| |...+|..
T Consensus       882 iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgim  952 (1034)
T KOG4190|consen  882 IAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIM  952 (1034)
T ss_pred             EEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCee
Confidence            444445588885 888999999777766533 3332222222222 255667777777887 667 77666543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.55  E-value=0.004  Score=53.46  Aligned_cols=133  Identities=6%  Similarity=-0.049  Sum_probs=77.9

Q ss_pred             CCCeEEEEeCCCCcEEE-EeecCC----ceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC--cceEEEEeC
Q 022387          154 PLNKVMIWDDHQSRCIG-ELSFRS----EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP--KGLCAVSQG  225 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~-~~~~~~----~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~--~~~~~~s~~  225 (298)
                      ..+...+|...+.+... .+..+.    -+...+-+...+.++. +.++++.++.....  .+..|...  ...++++.+
T Consensus        92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~--~~~~h~~~~~~ns~~~snd  169 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN--KFAVHNQNLTQNSLHYSND  169 (344)
T ss_pred             ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc--cceeeccccceeeeEEcCC
Confidence            45889999988755332 222211    1222233333444444 56777777743222  12223222  445566555


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcce---E-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRT---K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~---~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +  .++++.|... .|..|.+.....   . ....-+..=.+..||.....||+++.||+ +-|||++...
T Consensus       170 ~--~~~~~Vgds~-~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~~  236 (344)
T KOG4532|consen  170 P--SWGSSVGDSR-RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRNMA  236 (344)
T ss_pred             C--ceEEEecCCC-cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEecccc
Confidence            4  8888656554 455555543322   2 22333445678899999999999999999 9999998743

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.022  Score=56.14  Aligned_cols=196  Identities=16%  Similarity=0.189  Sum_probs=111.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCc-eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .|.|  |++.+..+|.|+.+| |.+.+-. .+....... +.++ +..+......+.++.++-++..  ....|+|||++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa-~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQA-YEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehhee-cchhhhhHhhcccCceEEEEEeecCCC--CceEEEEeccc
Confidence            4544  678888999999877 4444322 222122221 2333 3333333344566666543311  23379999976


Q ss_pred             C------CcEEE---Eee--c---CCceEEEEEeCCeEEEE---ECCeEEEEEc---CC-CeEEEEEeccCCCcceEEEE
Q 022387          165 Q------SRCIG---ELS--F---RSEVRSVKLRRDRIIVV---LEQKIFVYNF---AD-LKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       165 ~------~~~~~---~~~--~---~~~v~~v~~~~~~l~v~---~~~~I~iwd~---~~-~~~i~~~~~~~~~~~~~~~s  223 (298)
                      .      .+++.   .+.  +   ..++.+++.+.+...++   ++|.|.++..   ++ +....-......++...++.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            4      23442   222  2   23567777776543333   2588888854   21 22112222345677777887


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .++...++|   ..-..|.+|.++.+.  ..++..|...++|..|++.-..|+.++..  -+.+|+....+.
T Consensus       181 ~d~~s~lFv---~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e--~l~fY~sd~~~~  247 (933)
T KOG2114|consen  181 SDGKSVLFV---ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE--FLYFYDSDGRGP  247 (933)
T ss_pred             cCCceeEEE---EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc--eEEEEcCCCcce
Confidence            777554454   334578888887665  34577888899999999765545555433  388888775443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.50  E-value=0.073  Score=48.52  Aligned_cols=105  Identities=10%  Similarity=-0.008  Sum_probs=72.0

Q ss_pred             CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC---CCCCCCCeEEEEeCCCCcEEEEeecCCce----
Q 022387          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQSRCIGELSFRSEV----  178 (298)
Q Consensus       106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~v~iWD~~~~~~~~~~~~~~~v----  178 (298)
                      +.+.|.|.++.+.+-....  ...-..+ +++++..++++..-.   ...-.+..|.+||..+.+.+.++......    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~--G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG--GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc--cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            4577889888877666654  2222333 788888888877400   00003578999999999999998864431    


Q ss_pred             ----EEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEecc
Q 022387          179 ----RSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETI  213 (298)
Q Consensus       179 ----~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~~~  213 (298)
                          ..+.+++  +.+++..   ++.|-++|+.+.+.+.++...
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp  147 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP  147 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence                2455555  4566654   479999999999999988863

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0053  Score=57.37  Aligned_cols=130  Identities=17%  Similarity=0.292  Sum_probs=87.5

Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC---------eEEE-EECCeEEEEEcCC--CeEEEEEeccCC--CcceE
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIV-VLEQKIFVYNFAD--LKLLHQIETIAN--PKGLC  220 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------~l~v-~~~~~I~iwd~~~--~~~i~~~~~~~~--~~~~~  220 (298)
                      ...++--|+++|+.+-++.+...|.-+.+.++         ..++ ..++.|.-||.+-  ...+..-+.|..  ....-
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs  434 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS  434 (644)
T ss_pred             cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence            36688899999999999999887766666553         2333 3457999999852  212222232221  11122


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ++...++| ++|+ |+.+|.|++|+......+ .|.+-..+|..|..+.||++|+..+ +.. +-|-++
T Consensus       435 c~aTT~sG-~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty-LlLi~t  499 (644)
T KOG2395|consen  435 CFATTESG-YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY-LLLIDT  499 (644)
T ss_pred             eeeecCCc-eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE-EEEEEE
Confidence            33444444 5553 999999999998655555 5788889999999999999887776 555 555554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.46  E-value=0.063  Score=46.65  Aligned_cols=120  Identities=10%  Similarity=0.110  Sum_probs=77.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Ce--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      .--..+.|..||.++-+.+. +.  ++.++.++++......+.  .....=-+....+.+...+      |..+...+||
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd  116 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITILGDKLYQLT------WKEGTGFVYD  116 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEETTEEEEEE------SSSSEEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEECCEEEEEE------ecCCeEEEEc
Confidence            34567788777876665554 32  789999998876666652  2221111111244555555      3679999999


Q ss_pred             CCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEecc
Q 022387          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETI  213 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~  213 (298)
                      ..+-+.+.++.+...-..++...+.+.+.. +..++++|-.+.+..++++..
T Consensus       117 ~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  117 PNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             TTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             cccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            999999999999988889987777666654 479999999998888887754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.42  E-value=0.035  Score=53.80  Aligned_cols=188  Identities=10%  Similarity=0.006  Sum_probs=112.4

Q ss_pred             EEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387           91 ISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (298)
Q Consensus        91 v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~  168 (298)
                      +=+++||+.+..-++ .+ +-+.|.++.+.......  .+....+.+.+++..+.+.+-...   ..+++..-+......
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~  272 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDW  272 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCce
Confidence            445678877765555 44 34778887766555554  455556666776666655541110   123344444433322


Q ss_pred             EEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCC-----CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE
Q 022387          169 IGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (298)
Q Consensus       169 ~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~-----~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i  243 (298)
                      +..+.... +..+.-..+...+ .+++|.+.|..+     .+.+..+.....|. -+.+++|  +.++.++|-.+.+|.|
T Consensus       273 ~vvfni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH-GV~vSPD--GkylyVanklS~tVSV  347 (635)
T PRK02888        273 VVVFNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPH-GVNTSPD--GKYFIANGKLSPTVTV  347 (635)
T ss_pred             EEEEchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCcc-ceEECCC--CCEEEEeCCCCCcEEE
Confidence            22222111 0111112233333 467899999987     56777777766654 3455655  5888878999999999


Q ss_pred             EEcCCcce-------------EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          244 EHYASKRT-------------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       244 ~~~~~~~~-------------~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .|+.....             .+..- .-.....+|.++|..+.|-.-|.. |-.||+.+
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsq-v~kwn~~~  405 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA  405 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecce-eEEEehHH
Confidence            88865321             11111 223456789999999999999998 88999886

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.41  E-value=0.00066  Score=62.41  Aligned_cols=156  Identities=15%  Similarity=0.106  Sum_probs=101.1

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC--CceEEEEE---eCCeEEEE--ECCeEEE
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKL---RRDRIIVV--LEQKIFV  198 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~---~~~~l~v~--~~~~I~i  198 (298)
                      |.+.+..+.+...+..++..+       +|..|.+||+.++.....+...  ..|....|   +.+..++.  .++.|++
T Consensus       141 H~GcVntV~FN~~Gd~l~SgS-------DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGS-------DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             CCCccceeeecccCceeeccC-------ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            455555555555565555444       6799999999988776555422  23444333   33333332  3588888


Q ss_pred             EEcC-CCeE--EEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeeccccc---ceeEEEECC
Q 022387          199 YNFA-DLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS---RIACFALTQ  268 (298)
Q Consensus       199 wd~~-~~~~--i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~---~V~~l~fsp  268 (298)
                      =.+. ++..  .+.+..|..++..+++-++.-..++  +++.|+.+.-.|+....    +..-..+..   ...+|+..|
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~--S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL--SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCccc--ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            7763 3332  2344567788888888777654555  57899999887776543    223334444   578899998


Q ss_pred             CC-CEEEEEeCCCCEEEEEECCCC
Q 022387          269 DG-QLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       269 dg-~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      -. .+||+|+.|.- +||+|.+.-
T Consensus       292 ~nt~~faVgG~dqf-~RvYD~R~~  314 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQF-ARVYDQRRI  314 (559)
T ss_pred             CCccccccCChhhh-hhhhcccch
Confidence            65 59999999999 999998753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.36  E-value=0.062  Score=46.28  Aligned_cols=148  Identities=9%  Similarity=0.017  Sum_probs=86.9

Q ss_pred             CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387           97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (298)
Q Consensus        97 g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (298)
                      .+++..|+..+ +.--|.++++..++..+  +..+..-.+. -++.+++..       ..+.+.+.++.+|..+..+..-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GC-------y~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGC-------YSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEE-------ccCcEEEEEecchhheeeeeeh
Confidence            35677888755 44567777777666655  4444433332 345555555       4577999999999877776665


Q ss_pred             CceEE---EEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce
Q 022387          176 SEVRS---VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (298)
Q Consensus       176 ~~v~~---v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~  251 (298)
                      ..|.+   ++++...+...+ ++..+..|.++..++.+.+........-++.+.+ +.+.++  ...|.|.--..+..+.
T Consensus        93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a--~t~G~vlavt~~~~~~  169 (354)
T KOG4649|consen   93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAA--ITAGAVLAVTKNPYSS  169 (354)
T ss_pred             hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCC-ceEEEE--eccceEEEEccCCCCc
Confidence            54433   345555555554 5799999999999998877654433344555533 344432  3444444333333333


Q ss_pred             Eeeccc
Q 022387          252 KFIMAH  257 (298)
Q Consensus       252 ~~~~~H  257 (298)
                      .++-.|
T Consensus       170 ~~~w~~  175 (354)
T KOG4649|consen  170 TEFWAA  175 (354)
T ss_pred             ceehhh
Confidence            344333

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.28  E-value=0.046  Score=50.70  Aligned_cols=107  Identities=11%  Similarity=0.046  Sum_probs=64.9

Q ss_pred             CCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEE----------EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           97 HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVV----------EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        97 g~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      +..+.+++.+ .+.-+|.++++.++...+.  ......          ......+.+++.+       .++.+.-+|.++
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-------~~g~l~ald~~t  139 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLS--EKDGWFSKNKSALLSGGVTVAGGKVYIGS-------EKGQVYALNAED  139 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCC--CcccccccccccccccccEEECCEEEEEc-------CCCEEEEEECCC
Confidence            4455555554 4556788888877766641  110000          0011233444433       468899999999


Q ss_pred             CcEEEEeecCCceEE-EEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEec
Q 022387          166 SRCIGELSFRSEVRS-VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIET  212 (298)
Q Consensus       166 ~~~~~~~~~~~~v~~-v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~  212 (298)
                      |+.+-+.+....+.+ -....+.+++.. ++.|..+|..+++.+.++..
T Consensus       140 G~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        140 GEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             CCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            988777666544332 223345555554 57899999999999888764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.28  E-value=0.00079  Score=42.41  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      ...|.+++|+|...+||.+..||. |.|+++ +++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qriw   46 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRIW   46 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCcc
Confidence            356999999999999999999999 999999 777653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.25  E-value=0.052  Score=55.52  Aligned_cols=193  Identities=14%  Similarity=0.119  Sum_probs=117.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe--
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD--  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD--  162 (298)
                      ..|.++.|-.|+.-|..+...| +.+-|.++......-..  ..+|.+++|+++...++++++..       ++.+-+  
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aaswS~Dee~l~liT~~~-------tll~mT~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV--DNGISAASWSPDEELLALITGRQ-------TLLFMTKD  139 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec--cCceEEEeecCCCcEEEEEeCCc-------EEEEEecc
Confidence            5899999999998777777755 55557777766555554  67899999999999999998643       332221  


Q ss_pred             --CC-------------------CCcEEEEee----------------------cCCceEEEEEeCC--eEEEE-----E
Q 022387          163 --DH-------------------QSRCIGELS----------------------FRSEVRSVKLRRD--RIIVV-----L  192 (298)
Q Consensus       163 --~~-------------------~~~~~~~~~----------------------~~~~v~~v~~~~~--~l~v~-----~  192 (298)
                        .-                   -|+....|.                      .+..-.++.|-.+  ++++.     .
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence              10                   011000111                      1111233666554  44442     2


Q ss_pred             C-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec--CCCceEEEEEcCCcce----EeecccccceeEEE
Q 022387          193 E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRT----KFIMAHDSRIACFA  265 (298)
Q Consensus       193 ~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG--s~dg~v~i~~~~~~~~----~~~~~H~~~V~~l~  265 (298)
                      + ..|++||-+ +.+-.+ . .......-++++-|.|.++|+..  ..|+.|.++..+.-.-    ..+......|..++
T Consensus       220 ~~RkirV~drE-g~Lns~-s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GALNST-S-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             CceeEEEeccc-chhhcc-c-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence            3 689999976 332111 1 11112234667777778887543  3355677777654321    12333344599999


Q ss_pred             ECCCCCEEEE---EeCCCCEEEEEECCCC
Q 022387          266 LTQDGQLLAT---SSTKGTLVRIFNTLDG  291 (298)
Q Consensus       266 fspdg~~lAt---~S~Dgt~IrIWd~~tg  291 (298)
                      |+.++..||.   ...... |++|-+.+-
T Consensus       297 Wns~sdiLAv~~~~~e~~~-v~lwt~~Ny  324 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENSL-VQLWTTGNY  324 (1265)
T ss_pred             ecCCCCceeeeecccccce-EEEEEecCe
Confidence            9999999999   555554 999987764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.033  Score=50.48  Aligned_cols=206  Identities=10%  Similarity=0.009  Sum_probs=109.5

Q ss_pred             ccCCCCCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           80 TSSSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      +..++...|+.++|||..+ +|..++- ..|+|.|+++.........  ...+-.++|.-+..-.+.+|.      ..|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl------~nG~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGL------QNGM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEec------cCce
Confidence            3456667899999999877 6667765 6689999999876655553  355666677666655566552      5688


Q ss_pred             EEEEeCCCCcE-EEEeec---CCceEEEE-------EeCCeEEEEECCeEEEEEcC--CCeEEEEEeccCCCcceEEEEe
Q 022387          158 VMIWDDHQSRC-IGELSF---RSEVRSVK-------LRRDRIIVVLEQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       158 v~iWD~~~~~~-~~~~~~---~~~v~~v~-------~~~~~l~v~~~~~I~iwd~~--~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      |.|+|++..+- +.++..   ..+|..++       |....++++..-....|++.  .......+.. ..+..++.+..
T Consensus       260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy  338 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQY  338 (463)
T ss_pred             EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeee
Confidence            99999986432 112211   12333332       33356666665556677662  1112222221 12333444444


Q ss_pred             CCCCeEEEEecCCCc------eE--EEEEcCCcceE-eeccc---------c-cceeEEEECCCCCEEEEEeCCCCEEEE
Q 022387          225 GVGSLVLVCPGLQKG------QV--RVEHYASKRTK-FIMAH---------D-SRIACFALTQDGQLLATSSTKGTLVRI  285 (298)
Q Consensus       225 ~~d~~~la~sGs~dg------~v--~i~~~~~~~~~-~~~~H---------~-~~V~~l~fspdg~~lAt~S~Dgt~IrI  285 (298)
                      ++....+.++-..+.      .|  ++.+.+.-.+. .-..|         + .++..   .++.++++..+.+...+.+
T Consensus       339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~---~~~nn~iv~~gd~tn~lil  415 (463)
T KOG1645|consen  339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA---VEDNNYIVVVGDSTNELIL  415 (463)
T ss_pred             cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec---cccccEEEEecCCcceeEE
Confidence            432222221211110      00  11111111111 11111         1 11222   3455677766666656999


Q ss_pred             EECCCCcEEEec
Q 022387          286 FNTLDGTLLQEG  297 (298)
Q Consensus       286 Wd~~tg~~l~~~  297 (298)
                      ||..+++++++|
T Consensus       416 ~D~~s~evvQ~l  427 (463)
T KOG1645|consen  416 QDPHSFEVVQTL  427 (463)
T ss_pred             eccchhheeeec
Confidence            999999998876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.08  E-value=0.0066  Score=60.05  Aligned_cols=149  Identities=14%  Similarity=0.136  Sum_probs=97.2

Q ss_pred             EcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC--CCCCCCeEEEEeCCCCcEE
Q 022387           93 FNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD--PQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        93 fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~v~iWD~~~~~~~  169 (298)
                      ...++++|.+|...| |.+-|..+.+.+.....   +.-.+.++.-.+|.++++|-+..  ....|.-|+|||+++.+.+
T Consensus       183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a---Hs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDA---HSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             EEecCcEEEeecccceEEeecCCcCceeeeeec---cccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            345688999998855 66878777776655553   33345556667899998885441  2335777999999998877


Q ss_pred             EEeecCCceEEEEEeCC---eEEEEE-CCeEEEEEc---CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387          170 GELSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNF---ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (298)
Q Consensus       170 ~~~~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~---~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~  242 (298)
                      .-+.++-.-.-+.|+|.   .++|+. .|.+.+-|.   .+.. ...+..+....++.+|..++.+..+|+ |..+|.|.
T Consensus       260 ~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alaf-gd~~g~v~  337 (1118)
T KOG1275|consen  260 SPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAF-GDHEGHVN  337 (1118)
T ss_pred             CCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEE-ecccCcEe
Confidence            66666543333456653   555554 488888883   3221 222333333334555555666689997 99999999


Q ss_pred             EEEc
Q 022387          243 VEHY  246 (298)
Q Consensus       243 i~~~  246 (298)
                      +|.-
T Consensus       338 ~wa~  341 (1118)
T KOG1275|consen  338 LWAD  341 (1118)
T ss_pred             eecC
Confidence            9983

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.00  E-value=0.0034  Score=60.34  Aligned_cols=110  Identities=14%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             eEEEEEeCCeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce----E
Q 022387          178 VRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----K  252 (298)
Q Consensus       178 v~~v~~~~~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~----~  252 (298)
                      .++++-..+.++++.+ |.+.+|+-..++. +.++........+..+-+.+..++| .|+..|.|.|+-++....    .
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvA-agt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVA-AGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhh-hhcCCceEEeehhhccCCCccee
Confidence            3555566778888775 8999999765543 3333211222333333333335555 599999999977765321    1


Q ss_pred             --ee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          253 --FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       253 --~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                        .+ +.|...|+|++|++||..|-+|...|+ |..-.+.+
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCce-EEEEEech
Confidence              11 237788999999999999999999998 87766655

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.96  E-value=0.0045  Score=58.44  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=58.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ++-..++.|.|++++|+.+.|+.|..|| +++||.........+.   .-....+.|.+++..+++++       ..|.+
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka---~~~P~~iaWHp~gai~~V~s-------~qGel  323 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA---EFIPTLIAWHPDGAIFVVGS-------EQGEL  323 (545)
T ss_pred             EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee---cccceEEEEcCCCcEEEEEc-------CCceE
Confidence            3445677999999999999999999877 7899987764443322   33456788888888887777       56999


Q ss_pred             EEEeCCCC
Q 022387          159 MIWDDHQS  166 (298)
Q Consensus       159 ~iWD~~~~  166 (298)
                      .+||..-.
T Consensus       324 Q~FD~ALs  331 (545)
T PF11768_consen  324 QCFDMALS  331 (545)
T ss_pred             EEEEeecC
Confidence            99997654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.95  E-value=0.046  Score=53.06  Aligned_cols=195  Identities=12%  Similarity=0.105  Sum_probs=108.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ...++.|.+++|+.||+.|+..-+||.+|--.-.+..++.+++ .......+.|+.+...+.+.-       ..+.+.++
T Consensus       112 nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL-kg~~l~hv~ws~D~~~~Lf~~-------ange~hly  183 (1189)
T KOG2041|consen  112 NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL-KGQLLAHVLWSEDLEQALFKK-------ANGETHLY  183 (1189)
T ss_pred             CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-chheccceeecccHHHHHhhh-------cCCcEEEe
Confidence            3445689999999999987765555533222222223333333 122334556666555444333       45778999


Q ss_pred             eCCCC-------cEEEEe-----ecCCceEEEEEeC----------CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcc
Q 022387          162 DDHQS-------RCIGEL-----SFRSEVRSVKLRR----------DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKG  218 (298)
Q Consensus       162 D~~~~-------~~~~~~-----~~~~~v~~v~~~~----------~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~  218 (298)
                      |-+..       .+....     ++...+-.+.|..          -.+++|-+ |.+.|..-.+......+.+.   ..
T Consensus       184 dnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~  260 (1189)
T KOG2041|consen  184 DNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MK  260 (1189)
T ss_pred             cccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cE
Confidence            86542       121111     1223455555532          25666654 66666544322222233332   34


Q ss_pred             eEEEEeCCCCeEEEEecCCC--------ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          219 LCAVSQGVGSLVLVCPGLQK--------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~d--------g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .+..-++++|.+||+.|...        ..|.++.--..-+.+++-....|+.++|--.|-.+|-+- |+. |.+=+++
T Consensus       261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsf-iyfanIR  337 (1189)
T KOG2041|consen  261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSF-IYFANIR  337 (1189)
T ss_pred             eecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cce-EEEEeec
Confidence            45566777778888755431        244444443444557777788899999988888888874 776 6654444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.94  E-value=0.074  Score=46.16  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=83.4

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeec------CCceEEEEEecC------CCEEEEEeCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFR------CNILALVGGGPDPQY  153 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~~~  153 (298)
                      +=+-++||||+.+||.+.. +.|+|||+.... ++...-.+      ...+..+.+...      ...+.+..       
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-------  116 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-------  116 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-------
Confidence            4567999999999999877 558899886432 22222110      122232222111      11233333       


Q ss_pred             CCCeEEEEeCC-----CCcEEEEeec----CCceEEEEEeCC--eEEEEEC---C---------eEEEEEcCCCeEEEEE
Q 022387          154 PLNKVMIWDDH-----QSRCIGELSF----RSEVRSVKLRRD--RIIVVLE---Q---------KIFVYNFADLKLLHQI  210 (298)
Q Consensus       154 ~d~~v~iWD~~-----~~~~~~~~~~----~~~v~~v~~~~~--~l~v~~~---~---------~I~iwd~~~~~~i~~~  210 (298)
                      -.|.++=+-+.     ..+....+.+    ...|.++.+++.  .+++++.   +         .+..|.+-++.+-...
T Consensus       117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence            23555544432     2234445554    336888888875  3334321   1         4667766432221110


Q ss_pred             --------------------e-----c--cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc
Q 022387          211 --------------------E-----T--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (298)
Q Consensus       211 --------------------~-----~--~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~  249 (298)
                                          .     .  ......+..++-+||+.+||+ -+.+|.|.+|++-.-
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~-ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLAC-IHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEE-EEcCCeEEEEecCcc
Confidence                                0     0  112334555566667799985 899999999998653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.017  Score=54.26  Aligned_cols=156  Identities=12%  Similarity=0.090  Sum_probs=99.1

Q ss_pred             ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE--------------CC
Q 022387          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--------------EQ  194 (298)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~--------------~~  194 (298)
                      .-..+.|++.+.++++.-        ...|.+|--.+-..++.+.|. .|.-+.|+|....+++              .+
T Consensus       212 Tetyv~wSP~GTYL~t~H--------k~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFH--------KQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeeEEecCCceEEEEEe--------ccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCc
Confidence            446788888888887765        355999987765555555443 4666777764322221              15


Q ss_pred             eEEEEEcCCCeEEEEEeccCCCcce-EEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc-cccceeEEEECCCCCE
Q 022387          195 KIFVYNFADLKLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQL  272 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~~~~~-~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~-H~~~V~~l~fspdg~~  272 (298)
                      .++|||+.++.+.+.|.....+... -.|.++.|..++|.  -.-..|.|++...-.+...+. .-..|....|||.+.+
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Ar--m~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFAR--MTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL  360 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEE--eccceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence            8999999999999998874433322 24566667799985  444678887765422211111 2356889999999998


Q ss_pred             EEEEeCC-----CCEEEEEECCCCcEEEe
Q 022387          273 LATSSTK-----GTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       273 lAt~S~D-----gt~IrIWd~~tg~~l~~  296 (298)
                      ||==...     -+ +.|-.+.+++.|++
T Consensus       361 lAYwtpe~~~~par-vtL~evPs~~~iRt  388 (698)
T KOG2314|consen  361 LAYWTPETNNIPAR-VTLMEVPSKREIRT  388 (698)
T ss_pred             EEEEcccccCCcce-EEEEecCccceeee
Confidence            8854321     23 55555566555543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.86  E-value=0.14  Score=47.48  Aligned_cols=126  Identities=12%  Similarity=0.078  Sum_probs=74.3

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCC-CcceEEEEeCCCCeEE
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVL  231 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~-~~~~~~~s~~~d~~~l  231 (298)
                      .++.+.-.|..+++.+-+..+... ..+....+.+.+.. ++.+..+|..+++.+.+...... ......+.   ++.++
T Consensus       264 ~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~  339 (394)
T PRK11138        264 YNGNLVALDLRSGQIVWKREYGSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLV  339 (394)
T ss_pred             cCCeEEEEECCCCCEEEeecCCCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEE
Confidence            457888899999887665554321 22344556666655 58999999998887665432111 11122222   23444


Q ss_pred             EEecCCCceEEEEEcCCcceE-eeccccccee-EEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          232 VCPGLQKGQVRVEHYASKRTK-FIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~-~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      +  ++.+|.+...|..+.++. ..+-....+. ...+  .+..|..++.||. +..++.
T Consensus       340 v--~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~-l~~~~~  393 (394)
T PRK11138        340 V--GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT-VYAITR  393 (394)
T ss_pred             E--EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce-EEEEeC
Confidence            4  788999998887766543 3332222222 2222  2346777788998 777654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.02  Score=56.01  Aligned_cols=139  Identities=16%  Similarity=0.179  Sum_probs=86.9

Q ss_pred             CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC
Q 022387          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                      ....+++.+       ..|.|.+.+..-.. ...+.+...    ...+..+++|. ||+|.|-.+.+.+..+++.- ..+
T Consensus        48 ~~~~~~~Gt-------H~g~v~~~~~~~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rp  114 (846)
T KOG2066|consen   48 HDKFFALGT-------HRGAVYLTTCQGNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRP  114 (846)
T ss_pred             hcceeeecc-------ccceEEEEecCCcc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEec-CCc
Confidence            344556655       55777777765432 222222222    33456677766 47788888776666655543 345


Q ss_pred             cceEEEEeCC---CCeEEEEecCCCceEEEEEcC---CcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          217 KGLCAVSQGV---GSLVLVCPGLQKGQVRVEHYA---SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       217 ~~~~~~s~~~---d~~~la~sGs~dg~v~i~~~~---~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..+++++|+.   ....++ +|+..| +.++..+   .+....+..-.++|.+|.|  .|.++|=++++|  |||+|+.+
T Consensus       115 iksial~Pd~~~~~sk~fv-~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~  188 (846)
T KOG2066|consen  115 IKSIALHPDFSRQQSKQFV-SGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPT  188 (846)
T ss_pred             ceeEEeccchhhhhhhhee-ecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC--cEEEeccc
Confidence            6677777761   123343 488888 6664432   2222256666789999999  578999999776  69999999


Q ss_pred             CcEEE
Q 022387          291 GTLLQ  295 (298)
Q Consensus       291 g~~l~  295 (298)
                      ++.+.
T Consensus       189 ~~~l~  193 (846)
T KOG2066|consen  189 RQRLT  193 (846)
T ss_pred             cceee
Confidence            98764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.85  E-value=0.37  Score=46.19  Aligned_cols=139  Identities=16%  Similarity=0.249  Sum_probs=80.2

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCc------eE-EEEEeCCeEEEEE----------CCeEEEEEcCCCeEEEEEeccCCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSE------VR-SVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~------v~-~v~~~~~~l~v~~----------~~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                      .++.|.-+|.++++.+-+++....      +. +..+..+.+++..          ++.+..+|..+++.+.+++.....
T Consensus       118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~  197 (488)
T cd00216         118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD  197 (488)
T ss_pred             CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence            468899999999998877665443      11 1233445555543          367889999999998887753211


Q ss_pred             c---------------------ceEEEEeCCCCeEEEEecCCCc------------------eEEEEEcCCcceE-eec-
Q 022387          217 K---------------------GLCAVSQGVGSLVLVCPGLQKG------------------QVRVEHYASKRTK-FIM-  255 (298)
Q Consensus       217 ~---------------------~~~~~s~~~d~~~la~sGs~dg------------------~v~i~~~~~~~~~-~~~-  255 (298)
                      .                     ...++... .+.+++  |+.++                  .|.-.|.++.+.. .+. 
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~-~g~V~v--g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~  274 (488)
T cd00216         198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPK-TNLVYV--GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT  274 (488)
T ss_pred             cCCCCCCCCCcceecCCCCCccCCeeEeCC-CCEEEE--ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence            0                     01122211 223443  45444                  4555666655433 322 


Q ss_pred             -ccc--------cc-eeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          256 -AHD--------SR-IACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       256 -~H~--------~~-V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       .|.        .+ +..+. .-+|.   .++.++.+|. +...|.++|+.+.++
T Consensus       275 ~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~  327 (488)
T cd00216         275 TPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISAR  327 (488)
T ss_pred             CCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEe
Confidence             221        11 11111 12343   6777888999 999999999998764

The alignment model contains an 8-bladed beta-propeller.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.79  E-value=0.29  Score=42.05  Aligned_cols=187  Identities=15%  Similarity=0.089  Sum_probs=102.6

Q ss_pred             eEEEEEc-CCCCEEEEEcCCeEEEEEcCCCceEEEEeee-cC-Cce--EEEEEecCCCEEEEEeCCCCCC-CCCCeEEEE
Q 022387           88 LLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RG-GGI--GVVEMLFRCNILALVGGGPDPQ-YPLNKVMIW  161 (298)
Q Consensus        88 V~~v~fs-~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~iW  161 (298)
                      ...+++. ++|.++++ ..+++.++|..+.+........ .. ...  .-+.+..+++..+...+..... ...+.|..+
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~  120 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI  120 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred             CceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence            6677888 67665555 4566677788887654333321 01 223  3445566676555544322100 011567778


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCCe--EEEEE--CCeEEEEEcCC-Ce-E--EEEEeccCCCc-ceEEEEeCCCCeEEE
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFAD-LK-L--LHQIETIANPK-GLCAVSQGVGSLVLV  232 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~-~~-~--i~~~~~~~~~~-~~~~~s~~~d~~~la  232 (298)
                      +.. ++.......-.....++|+++.  +.++.  .+.|..|++.. .. .  .+.+....... ..--+..+.++.+.+
T Consensus       121 ~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v  199 (246)
T PF08450_consen  121 DPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV  199 (246)
T ss_dssp             ETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred             CCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence            877 5544434333456778888753  55554  37899998842 22 1  22232211111 122344566667666


Q ss_pred             EecCCCceEEEEEcCCcceEeecccccceeEEEEC-CCC-CEEEEEe
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDG-QLLATSS  277 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fs-pdg-~~lAt~S  277 (298)
                      + ....+.|.+++-+.+.+..+.--...+++++|. ++. .+++|.+
T Consensus       200 a-~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  200 A-DWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             E-EETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             E-EcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            3 567788888888866555555445589999995 664 5666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.72  E-value=0.42  Score=42.96  Aligned_cols=174  Identities=14%  Similarity=0.229  Sum_probs=95.8

Q ss_pred             CCEEEEEcC---------C-e-EEEEEcCCC-----ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           97 HGCFAAGTD---------H-G-FRIYNCDPF-----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        97 g~~lasgs~---------~-g-i~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      -.+|++|..         . | +.++++...     +.....+....+.+..++.. .+. ++++.        .++|.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~--------g~~l~v  111 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV--------GNKLYV  111 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE--------TTEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee--------cCEEEE
Confidence            468888763         1 6 668888773     32222221135666665544 444 44443        278999


Q ss_pred             EeCCCCc-EEEEeec--CCceEEEEEeCCeEEEEEC-CeEEEEEcC-CCeEEEEEeccCCCcceEEEEe--CCCCeEEEE
Q 022387          161 WDDHQSR-CIGELSF--RSEVRSVKLRRDRIIVVLE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQ--GVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~~-~~~~~~~--~~~v~~v~~~~~~l~v~~~-~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~--~~d~~~la~  233 (298)
                      |++...+ ......+  ...+.++....+.++++.- +.|.++... ..+.+..+.....+..+.++.+  +.+ .+++ 
T Consensus       112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~-  189 (321)
T PF03178_consen  112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV-  189 (321)
T ss_dssp             EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE-
T ss_pred             EEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE-
Confidence            9998877 5544333  3467788888887777753 667766543 2333444444444544444433  443 4444 


Q ss_pred             ecCCCceEEEEEcCC--------c-ceE-eeccc-ccceeEE---EECC--CCC------EEEEEeCCCCEEE
Q 022387          234 PGLQKGQVRVEHYAS--------K-RTK-FIMAH-DSRIACF---ALTQ--DGQ------LLATSSTKGTLVR  284 (298)
Q Consensus       234 sGs~dg~v~i~~~~~--------~-~~~-~~~~H-~~~V~~l---~fsp--dg~------~lAt~S~Dgt~Ir  284 (298)
                       ++.+|.+.+.....        . .+. ...-| ...|+++   ++.|  .+.      .++-++.+|. |-
T Consensus       190 -~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~-Ig  260 (321)
T PF03178_consen  190 -GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS-IG  260 (321)
T ss_dssp             -EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred             -EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE-EE
Confidence             79999999955542        1 222 22233 3457777   6556  222      3777778998 65

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.039  Score=50.77  Aligned_cols=206  Identities=12%  Similarity=0.103  Sum_probs=121.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCC---EEEEEeCCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLN  156 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~  156 (298)
                      +.|-..|.+++.+.||.++.++.+  +.++++|++.....-...+  ..--+.++|.....   .++.++     .+.++
T Consensus        50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs-----~~~sg  122 (558)
T KOG0882|consen   50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL--VDLPGFAEWVTSKGDKISLIAVS-----LFKSG  122 (558)
T ss_pred             HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc--ccCCCceEEecCCCCeeeeEEee-----cccCC
Confidence            556668889999999999999776  4588998876554333332  12223344433322   222333     23568


Q ss_pred             eEEEEeCCCCc-EE-EEee-cCCceEEEEEeCCeEEE-E--ECCeEEEEEcCC-CeEEE-----EEecc-------CCCc
Q 022387          157 KVMIWDDHQSR-CI-GELS-FRSEVRSVKLRRDRIIV-V--LEQKIFVYNFAD-LKLLH-----QIETI-------ANPK  217 (298)
Q Consensus       157 ~v~iWD~~~~~-~~-~~~~-~~~~v~~v~~~~~~l~v-~--~~~~I~iwd~~~-~~~i~-----~~~~~-------~~~~  217 (298)
                      .+.++|-.... .. ..-. +.++|.++..++-.-.+ .  ..|.|..|.... .+..+     .++..       ....
T Consensus       123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt  202 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT  202 (558)
T ss_pred             CcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc
Confidence            89999976543 22 2222 34688888877643222 2  348999998762 22111     11111       0111


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce---------------------------------Eeeccccc-ceeE
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---------------------------------KFIMAHDS-RIAC  263 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~---------------------------------~~~~~H~~-~V~~  263 (298)
                      ...++..++++..++. -..|-+|++.+++++.+                                 +.+..|.. .-+.
T Consensus       203 ~pts~Efsp~g~qist-l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  203 EPTSFEFSPDGAQIST-LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             CccceEEccccCcccc-cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            1223444444566764 45888899866553211                                 01223433 3467


Q ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       264 l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++|...|++|.=|..=|  |||.++.++++.+.+
T Consensus       282 ~~fdes~~flly~t~~g--ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILG--IKVINLDTNTVVRIL  313 (558)
T ss_pred             eEEcCCCCEEEeeccee--EEEEEeecCeEEEEe
Confidence            88999999999887654  899999999998764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.66  E-value=0.023  Score=49.91  Aligned_cols=158  Identities=15%  Similarity=0.199  Sum_probs=90.4

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEe-ee-cC-----CceEEEEEecC-CCEEEEEeCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FE-RG-----GGIGVVEMLFR-CNILALVGGGPDP  151 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~-~~-~~-----~~~~~~~~~~~-~~~~~~~~~~~~~  151 (298)
                      ....|+-.|.+++|+.|...+.++.+=.|-+|+++-....+... .. |+     .-+....+++. .+.+..++     
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-----  241 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-----  241 (460)
T ss_pred             ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-----
Confidence            34667778999999999999998877778899887543322221 10 00     01233334433 33444444     


Q ss_pred             CCCCCeEEEEeCCCCc------EEEEe-------ec----CCceEEEEEeCCeEEEEE-C-CeEEEEEcC-CCeEEEEEe
Q 022387          152 QYPLNKVMIWDDHQSR------CIGEL-------SF----RSEVRSVKLRRDRIIVVL-E-QKIFVYNFA-DLKLLHQIE  211 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~------~~~~~-------~~----~~~v~~v~~~~~~l~v~~-~-~~I~iwd~~-~~~~i~~~~  211 (298)
                        ..|+|++-|++...      .+.+.       .+    -+.|..+.|+++.-.++. + .+|+|||.+ ..+++.++.
T Consensus       242 --SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         242 --SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             --CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeec
Confidence              46899999987421      11111       11    124566778877644444 4 699999995 456777775


Q ss_pred             ccCCC-------------cceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387          212 TIANP-------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (298)
Q Consensus       212 ~~~~~-------------~~~~~~s~~~d~~~la~sGs~dg~v~i~~  245 (298)
                      -|..-             ..-..+++++|...+. +|+.....-|+-
T Consensus       320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~-sgsy~NNfgiyp  365 (460)
T COG5170         320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL-SGSYSNNFGIYP  365 (460)
T ss_pred             hHHHHHHHHHhhhhccceeeeEEEEecCCccccc-ccccccceeeec
Confidence            44321             1122445555544444 466655544443

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.64  E-value=0.079  Score=51.40  Aligned_cols=173  Identities=13%  Similarity=0.040  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCEEEEEc---CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           88 LLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs---~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ...+++++||+++.+.+   +.+.-+-.++.........+. -.  .+..+..++....+ +        +++|.+.|..
T Consensus       237 pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i~--~iea~vkdGK~~~V-~--------gn~V~VID~~  304 (635)
T PRK02888        237 LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-IA--RIEEAVKAGKFKTI-G--------GSKVPVVDGR  304 (635)
T ss_pred             cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-hH--HHHHhhhCCCEEEE-C--------CCEEEEEECC
Confidence            35678888999887765   444333333222211111110 00  01122234443333 2        3789999999


Q ss_pred             C-----CcEEEEeecCCceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeE------------EEEEeccCCCcceEEEE
Q 022387          165 Q-----SRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKL------------LHQIETIANPKGLCAVS  223 (298)
Q Consensus       165 ~-----~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~------------i~~~~~~~~~~~~~~~s  223 (298)
                      +     ...+..+........+.++++.  ++++.  +++|.|+|+.+.+.            +.+......|   ....
T Consensus       305 t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTa  381 (635)
T PRK02888        305 KAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTA  381 (635)
T ss_pred             ccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEE
Confidence            8     4677777777788888998864  44443  47999999977552            3333332222   2334


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCC----------cceE-eecccccc-----eeEEEECCCCCEEEEE
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYAS----------KRTK-FIMAHDSR-----IACFALTQDGQLLATS  276 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~----------~~~~-~~~~H~~~-----V~~l~fspdg~~lAt~  276 (298)
                      +++++..+. +-..|..|..|++..          .++. .+.-|-.+     ...=.-.|||++|++.
T Consensus       382 FDg~G~ayt-slf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        382 FDGRGNAYT-TLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL  449 (635)
T ss_pred             ECCCCCEEE-eEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence            466665544 467788888899764          1222 23333332     2222346899999987

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.46  E-value=0.19  Score=37.63  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceEEEEEe-CCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      .|..||+|+-.  +.+.++.....|.++.-. ...++.+. +|+|-+|+-  .+.+..++....+.....+..++|+..-
T Consensus        23 ~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~e   98 (111)
T PF14783_consen   23 DDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPE   98 (111)
T ss_pred             CCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceE
Confidence            68999999864  677888888888887754 34455444 589999975  4455666665555555566666665433


Q ss_pred             EEecCCCceEEE
Q 022387          232 VCPGLQKGQVRV  243 (298)
Q Consensus       232 a~sGs~dg~v~i  243 (298)
                      .+.|-.+|.|.+
T Consensus        99 LI~GwsnGkve~  110 (111)
T PF14783_consen   99 LIVGWSNGKVEV  110 (111)
T ss_pred             EEEEecCCeEEe
Confidence            334888988754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.41  E-value=0.57  Score=40.85  Aligned_cols=137  Identities=20%  Similarity=0.259  Sum_probs=78.5

Q ss_pred             CCCCEEEEEcCCeEEEEEc-CCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEE---
Q 022387           95 QDHGCFAAGTDHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---  170 (298)
Q Consensus        95 ~dg~~lasgs~~gi~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~---  170 (298)
                      ..++.|+.|.++|+.+++. ...+......   ...+..+.+..+-+.+++.+        |+.+.++++..-....   
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEEc--------CCccEEEEchhhccccccc
Confidence            4578999999999888888 3333322222   34577777777777777766        4789999976532222   


Q ss_pred             ------------EeecCCceEEEE----E-eCCeEEEEECCeEEEEEcCC----C-eEEEEEeccCCCcceEEEEeCCCC
Q 022387          171 ------------ELSFRSEVRSVK----L-RRDRIIVVLEQKIFVYNFAD----L-KLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       171 ------------~~~~~~~v~~v~----~-~~~~l~v~~~~~I~iwd~~~----~-~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                                  .+.....+...+    . ....++++...+|.+|....    . +..+++..... ...+++.  +  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~-~~~i~~~--~--  148 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP-PSSIAFL--G--  148 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC-cEEEEEe--C--
Confidence                        111122333333    1 12356667778999988854    2 45566655433 3334444  2  


Q ss_pred             eEEEEecCCCceEEEEEcCCc
Q 022387          229 LVLVCPGLQKGQVRVEHYASK  249 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~~  249 (298)
                      ..+++ |..++.. +.|+.+.
T Consensus       149 ~~i~v-~~~~~f~-~idl~~~  167 (275)
T PF00780_consen  149 NKICV-GTSKGFY-LIDLNTG  167 (275)
T ss_pred             CEEEE-EeCCceE-EEecCCC
Confidence            34443 5555544 4444433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.03  Score=53.45  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=73.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceE-EEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIG-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..|.-+.|+|.-.+||.+..+| +.+.... .++++...+ ++..++ .++|.+++..+|++=       .||+|++-|+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~-------kdG~I~L~Dv   91 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGF-------KDGTIRLHDV   91 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEe-------cCCeEEEEEc
Confidence            4788999999999999999988 6666655 555555554 455666 888999988887754       7899999999


Q ss_pred             CCCcEEEE--eecCCceEEEEEeCCeEEE
Q 022387          164 HQSRCIGE--LSFRSEVRSVKLRRDRIIV  190 (298)
Q Consensus       164 ~~~~~~~~--~~~~~~v~~v~~~~~~l~v  190 (298)
                      +++..+..  +.....|.++.|.+..+.+
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~~~v~~  120 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDRIEVRV  120 (665)
T ss_pred             cCCCceeccccccccchheeecccceeec
Confidence            99988877  4445578888887554443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.32  E-value=0.073  Score=49.92  Aligned_cols=133  Identities=10%  Similarity=0.095  Sum_probs=80.1

Q ss_pred             eEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      .+.++|+.+++....+++......-.|++  ..++.+..  +  .|.++|+...+. ..+.........-.++  +||..
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~s--pdG~~  295 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWS--PDGSK  295 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCC--CCCCE
Confidence            48888988877665555555444455666  45555543  2  788888876663 3344333333333444  45577


Q ss_pred             EEEecCCCceEEE--EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCE--EEEEECCCCc
Q 022387          231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL--VRIFNTLDGT  292 (298)
Q Consensus       231 la~sGs~dg~v~i--~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~--IrIWd~~tg~  292 (298)
                      +++..+..|.-.|  .+.+.+....+.-....=..-.|||||++||-.+..+..  |-+.|+.++.
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            7776777786666  445555444444333333377899999999999854322  4555555443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.0062  Score=61.24  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             eEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          229 LVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..+|+ |+..|.+...|++..  +...=..-.++|++++|+.||++++.|=.+|. |.+||+..++.++.+
T Consensus       100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen  100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeee
Confidence            55665 888888888555443  21111223468999999999999999999998 999999999887654

>smart00320 WD40 WD40 repeats

Probab=96.19  E-value=0.01  Score=33.45  Aligned_cols=30  Identities=17%  Similarity=0.488  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYN  112 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~  112 (298)
                      .|...|.++.|++++.++++|+.++ +++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566899999999999999998866 77885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.17  E-value=1.1  Score=41.67  Aligned_cols=195  Identities=18%  Similarity=0.268  Sum_probs=97.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeec-------CCceEEEEEe---c--CC--CEEEEEe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-------GGGIGVVEML---F--RC--NILALVG  146 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~-------~~~~~~~~~~---~--~~--~~~~~~~  146 (298)
                      +...++|++++.|--| ++|.|.++| +.|.|+.-...++...+.+       ...+..+++.   .  ++  ..+.+++
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4557899999998444 999999866 7799997777777655421       1122333332   1  11  1233333


Q ss_pred             CCCCCCCCCCeEEEEeCC--C-CcEEE----Ee-ecCCceEEEE-EeCC-----------------------eEEEEECC
Q 022387          147 GGPDPQYPLNKVMIWDDH--Q-SRCIG----EL-SFRSEVRSVK-LRRD-----------------------RIIVVLEQ  194 (298)
Q Consensus       147 ~~~~~~~~d~~v~iWD~~--~-~~~~~----~~-~~~~~v~~v~-~~~~-----------------------~l~v~~~~  194 (298)
                      .      ..|.+.+|.+.  . +....    .. ...++|..+. ++.+                       .++++++.
T Consensus       162 T------n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  162 T------NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             E------TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             e------CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            2      45888888654  1 21111    11 2334555543 3211                       55666788


Q ss_pred             eEEEEEcCCCeEEEEEeccCCCcce--EEEEe---CCCCeEEEEecCCCceEEEEEcCC-cceEeecc----cccceeEE
Q 022387          195 KIFVYNFADLKLLHQIETIANPKGL--CAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA----HDSRIACF  264 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~~~~~--~~~s~---~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~----H~~~V~~l  264 (298)
                      .||++...+.+..++..  ..+..+  +.+-.   ...+..|++ =..+|.|+++.+-. +.+..++.    +...+...
T Consensus       236 ~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~-l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVC-LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             EEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEE-EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             ceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEE-EECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            99999998877766544  222222  22211   112234443 47899999999854 44444333    33457788


Q ss_pred             EECCCCCEEEEEeCCCCEEEEEEC
Q 022387          265 ALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       265 ~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      +|+++|..|.-.|.. . +.+|.+
T Consensus       313 sis~~Gdi~~~~gps-E-~~l~sv  334 (395)
T PF08596_consen  313 SISRNGDIFYWTGPS-E-IQLFSV  334 (395)
T ss_dssp             EE-TTS-EEEE-SSS-E-EEEEEE
T ss_pred             EECCCCCEEEEeCcc-c-EEEEEE
Confidence            899999988777643 3 555543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.14  E-value=0.32  Score=45.89  Aligned_cols=134  Identities=13%  Similarity=0.032  Sum_probs=76.2

Q ss_pred             CCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC----------
Q 022387           97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----------  166 (298)
Q Consensus        97 g~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~----------  166 (298)
                      |.+|+..+++.+.+||+++.+.+.+...   ..+..+.|+.+++.+++++        +.++.|++....          
T Consensus       117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t--------~~~i~il~~~~~~~~~~~~~g~  185 (443)
T PF04053_consen  117 GNLLGVKSSDFICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVT--------KDSIYILKYNLEAVAAIPEEGV  185 (443)
T ss_dssp             SSSEEEEETTEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE---------S-SEEEEEE-HHHHHHBTTTB-
T ss_pred             CcEEEEECCCCEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEe--------CCeEEEEEecchhcccccccCc
Confidence            8899888888899999999988766653   4478889999999999987        356888875544          


Q ss_pred             --cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387          167 --RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (298)
Q Consensus       167 --~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~  244 (298)
                        .....-+....|.+..|..+-++-.+.++|+.+-  +++. .++..-..+...+.+.+.. +.+++  ...++.|..+
T Consensus       186 e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkYl~--~Ge~-~~i~~ld~~~yllgy~~~~-~~ly~--~Dr~~~v~~~  259 (443)
T PF04053_consen  186 EDAFELIHEISERIKSGCWVEDCFIYTTSNHLKYLV--NGET-GIIAHLDKPLYLLGYLPKE-NRLYL--IDRDGNVISY  259 (443)
T ss_dssp             GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEEEE--TTEE-EEEEE-SS--EEEEEETTT-TEEEE--E-TT--EEEE
T ss_pred             hhceEEEEEecceeEEEEEEcCEEEEEcCCeEEEEE--cCCc-ceEEEcCCceEEEEEEccC-CEEEE--EECCCCEEEE
Confidence              2221222256899999999865556667777733  3332 2344445567777776643 24444  3777777776


Q ss_pred             EcC
Q 022387          245 HYA  247 (298)
Q Consensus       245 ~~~  247 (298)
                      .+.
T Consensus       260 ~ld  262 (443)
T PF04053_consen  260 ELD  262 (443)
T ss_dssp             E--
T ss_pred             EEC
Confidence            654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.03  E-value=0.38  Score=36.07  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=54.5

Q ss_pred             CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEE
Q 022387          186 DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACF  264 (298)
Q Consensus       186 ~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l  264 (298)
                      +.|+++++ ..||+|+-  .+.+.++.........+.+.   . ..+++ |..+|+|-+|+...+ +...+.-.. ++++
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~---~-~~F~Y-~l~NGTVGvY~~~~R-lWRiKSK~~-~~~~   86 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG---G-GRFAY-ALANGTVGVYDRSQR-LWRIKSKNQ-VTSM   86 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC---C-CEEEE-EecCCEEEEEeCcce-eeeeccCCC-eEEE
Confidence            46666664 69999974  46677777654443333332   2 45665 899999999987443 333332222 5555


Q ss_pred             EEC---CCC-CEEEEEeCCCCEE
Q 022387          265 ALT---QDG-QLLATSSTKGTLV  283 (298)
Q Consensus       265 ~fs---pdg-~~lAt~S~Dgt~I  283 (298)
                      ++.   -|| +-|++|-.+|. |
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGk-v  108 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGK-V  108 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCe-E
Confidence            443   334 57888888887 6

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.01  E-value=0.38  Score=45.14  Aligned_cols=181  Identities=12%  Similarity=0.092  Sum_probs=99.3

Q ss_pred             CCeEEEEEcCCCCEEEEEc---CC--eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           86 PTLLHISFNQDHGCFAAGT---DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs---~~--gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..+..-+|+|+++.++--.   .+  .+.++++++.+......+  .+....-.+++++..++++...+    ..-.|.+
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~  266 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRD----GSPDIYL  266 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCC----CCccEEE
Confidence            4677778999998655332   23  256778888776555554  45556667888999999988654    2344777


Q ss_pred             EeCCCCcEEEEeecCC-ceEEEEEeC--CeEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          161 WDDHQSRCIGELSFRS-EVRSVKLRR--DRIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~-~v~~v~~~~--~~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      .|+..++..+ +.... .-..=.|++  +.++..++  +  .|.+++...... ..+.........-.  +++|+.++++
T Consensus       267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~--~SpdG~~i~~  342 (425)
T COG0823         267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPV--WSPDGDKIVF  342 (425)
T ss_pred             EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCcc--CCCCCCEEEE
Confidence            7888777433 33322 112223444  34555554  2  788888766554 33322211111223  3455577776


Q ss_pred             ecCCCce--EEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387          234 PGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       234 sGs~dg~--v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~  276 (298)
                      .+..+|.  |.+.+...........+......-.|.++|+.|.-.
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence            5655666  333554443322222233334444556666554443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.00  E-value=0.028  Score=34.44  Aligned_cols=34  Identities=26%  Similarity=0.530  Sum_probs=27.1

Q ss_pred             cceeEEEECCC-C--CEEEEEeCCCCEEEEEECCCCcE
Q 022387          259 SRIACFALTQD-G--QLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       259 ~~V~~l~fspd-g--~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ++|++|.|||+ +  .+||-+-.-|. |.|+|++++-.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~f~   37 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSNFM   37 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccCcc
Confidence            47999999985 4  58888877777 99999996533

It contains a characteristic DLL sequence motif.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.87  E-value=0.0027  Score=60.48  Aligned_cols=195  Identities=14%  Similarity=0.123  Sum_probs=102.5

Q ss_pred             CCCeEEEEEcCCCC--EEEEEcCCe-EEEEEcCCC---ceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387           85 PPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPF---REIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        85 ~~~V~~v~fs~dg~--~lasgs~~g-i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ...+.|++++-+.+  .+|+|..+| |.+-.....   ..+++-.  +.......+|.. +.+.+|.+-   +..-.|-.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~--~ar~Ct~lAwneLDtn~LAagl---dkhrnds~  130 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG--YARPCTSLAWNELDTNHLAAGL---DKHRNDSS  130 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc--ccccccccccccccHHHHHhhh---hhhcccCC
Confidence            34788888876554  688888877 445433211   1111111  112222233321 233333321   11124677


Q ss_pred             EEEEeCCCC--cEEEEeecC----CceEEEEEeCCeEEEE---ECCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCC
Q 022387          158 VMIWDDHQS--RCIGELSFR----SEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       158 v~iWD~~~~--~~~~~~~~~----~~v~~v~~~~~~l~v~---~~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      ++|||..++  .......+.    ....++++..+.-++.   ....++++|++. ......+.+  ..+.-+.+.+- .
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG~tVdp~-~  207 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQGITVDPF-S  207 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--hhcccceecCC-C
Confidence            999999876  222222222    2334556655433332   246899999973 222222222  11223344441 2


Q ss_pred             CeEEEEecCCCceEEEEEcCC--cceEeeccccc-----ceeEEEECCCC-CEEEEEeCCCCEEEEEECC
Q 022387          228 SLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDS-----RIACFALTQDG-QLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~-----~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..+++  ...||.|.+||...  +.......|..     .+..++|+|.. -+||+.+.|...||++|+.
T Consensus       208 ~nY~c--s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFC--SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCcee--ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            36777  47799999999422  22111122322     39999999863 5778887777669999976

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.85  E-value=0.024  Score=35.64  Aligned_cols=29  Identities=24%  Similarity=0.442  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEc
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNC  113 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~  113 (298)
                      .+.|.+++|+|..++||.|+++| +.||.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            35799999999999999999977 668877

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=1.5  Score=40.49  Aligned_cols=201  Identities=11%  Similarity=0.078  Sum_probs=128.7

Q ss_pred             eEEEEEcCCCCEEEE-Ec-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           88 LLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        88 V~~v~fs~dg~~las-gs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      -..+++++++..+.. .. .+.+.+.|..+.........  ......+.+.+....+.++..+.    .++++.+.|..+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t  149 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAAT  149 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCC
Confidence            457889999985443 33 36788999777766555543  33445666677777776666431    258899999999


Q ss_pred             CcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEE-E----EeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          166 SRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH-Q----IETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~-~----~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      +..+.+..-...-..+.+.++  .+.++.  ++.|.+.|.......+ +    +..+.. -..+.+.+++...+++.-++
T Consensus       150 ~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         150 NKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             CeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccC
Confidence            888877444332366777664  455555  5899999987666553 1    222222 23456666665455554344


Q ss_pred             CCceEEEEEcCCcceEeec-cccc-ceeEEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEe
Q 022387          237 QKGQVRVEHYASKRTKFIM-AHDS-RIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~-~H~~-~V~~l~fspdg~~lAt~S~D-gt~IrIWd~~tg~~l~~  296 (298)
                      .++.+..-+.....+.... .-.. ....++++|+|+.+-..... ++ +.+-|..+.++...
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~  290 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKT  290 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeee
Confidence            4467777777766554321 1111 56778999999988888444 66 99999888777654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.83  E-value=0.78  Score=47.38  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=86.0

Q ss_pred             ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEEC-CeEEEEEcCCCe
Q 022387          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE-QKIFVYNFADLK  205 (298)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~~-~~I~iwd~~~~~  205 (298)
                      .+..+.+.-+.+.+.++.       .+|.|.+-|.++.....-=.....|.+.+|+++.  +++++. +++.+ ...+..
T Consensus        70 ~i~s~~fl~d~~~i~v~~-------~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~  141 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVIT-------ALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLF-MTKDFE  141 (1265)
T ss_pred             ceEEEEEecccceEEEEe-------cCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE-Eecccc
Confidence            444555555677777766       4577888888876543322334578888888763  444444 33333 222211


Q ss_pred             EEE------------------------EEeccCC-------------------CcceEEEEeCCCCeEEEEec----CCC
Q 022387          206 LLH------------------------QIETIAN-------------------PKGLCAVSQGVGSLVLVCPG----LQK  238 (298)
Q Consensus       206 ~i~------------------------~~~~~~~-------------------~~~~~~~s~~~d~~~la~sG----s~d  238 (298)
                      ++.                        .|.+...                   ...-+.+++-+||.++|+++    ...
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence            111                        1111000                   01123588999999999753    222


Q ss_pred             ceEEEEEcCCcceEe-ecccccceeEEEECCCCCEEEEE---eCCCCEEEEEE
Q 022387          239 GQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATS---STKGTLVRIFN  287 (298)
Q Consensus       239 g~v~i~~~~~~~~~~-~~~H~~~V~~l~fspdg~~lAt~---S~Dgt~IrIWd  287 (298)
                      ..|+||+.+. .+.. -..-.+-=.+++|-|.|.++|+-   ..|+. |.+|.
T Consensus       222 RkirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE  272 (1265)
T KOG1920|consen  222 RKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE  272 (1265)
T ss_pred             eeEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe
Confidence            7999999872 2221 11122234588999999999997   34566 88886

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.82  E-value=0.025  Score=55.86  Aligned_cols=90  Identities=17%  Similarity=0.269  Sum_probs=70.9

Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEe-ecccccceeEEEECCCCCE
Q 022387          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQL  272 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~-~~~H~~~V~~l~fspdg~~  272 (298)
                      |+|-||- .++++.+..   ..|+...+++++|...+|| .|-.-|.+.+|....+...+ ..-|..+|.-+.||++|..
T Consensus        41 GSVtIfa-dtGEPqr~V---t~P~hatSLCWHpe~~vLa-~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~  115 (1416)
T KOG3617|consen   41 GSVTIFA-DTGEPQRDV---TYPVHATSLCWHPEEFVLA-QGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTV  115 (1416)
T ss_pred             ceEEEEe-cCCCCCccc---ccceehhhhccChHHHHHh-hccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCe
Confidence            7888874 445543222   2355566788888767777 59999999999998877764 4569999999999999999


Q ss_pred             EEEEeCCCCEEEEEECC
Q 022387          273 LATSSTKGTLVRIFNTL  289 (298)
Q Consensus       273 lAt~S~Dgt~IrIWd~~  289 (298)
                      |.|+..-|. |.+|.+.
T Consensus       116 l~t~d~~g~-v~lwr~d  131 (1416)
T KOG3617|consen  116 LMTLDNPGS-VHLWRYD  131 (1416)
T ss_pred             EEEcCCCce-eEEEEee
Confidence            999999998 9999976

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.82  E-value=1.3  Score=39.76  Aligned_cols=134  Identities=7%  Similarity=-0.019  Sum_probs=75.9

Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEE-EEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC---CCcceEEEEeCCCCeE
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRS-VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA---NPKGLCAVSQGVGSLV  230 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~---~~~~~~~~s~~~d~~~  230 (298)
                      .+.|.-||..+++.. .+.....+.+ ...+....+++.+..+.+++..++..+..+....   .....-....++++.+
T Consensus        46 ~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~  124 (307)
T COG3386          46 GGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI  124 (307)
T ss_pred             CCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence            367788887765432 3444444444 3456777888888888888886555433332211   1122223344555566


Q ss_pred             EEEecC-----C-----CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          231 LVCPGL-----Q-----KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       231 la~sGs-----~-----dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .+.+-.     .     -|.|+..+-.......+..|-..-+.||||||++.|-.+-.....|.-|++.
T Consensus       125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            553222     1     1323333322334445666677889999999998777775543337777665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.49  E-value=1.5  Score=38.15  Aligned_cols=148  Identities=11%  Similarity=0.078  Sum_probs=91.1

Q ss_pred             CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE--EEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEecc
Q 022387          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETI  213 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~  213 (298)
                      +...+.-++|-.    ....|+.+|+.+++...........+.  ++...+.+...+  ++...+||..+.+.+.++.-.
T Consensus        54 ~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~  129 (264)
T PF05096_consen   54 DDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP  129 (264)
T ss_dssp             ETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-S
T ss_pred             CCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecC
Confidence            344555555432    345799999999999888887776554  667788888877  589999999999999888643


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeec--ccc---cceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM--AHD---SRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~--~H~---~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .   .-.-++.++  ..|..| .....+.++|-.+ +....+.  ...   ..++-|.|- +|...|=.=.... |-.-|
T Consensus       130 ~---EGWGLt~dg--~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~-I~~Id  201 (264)
T PF05096_consen  130 G---EGWGLTSDG--KRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR-IVRID  201 (264)
T ss_dssp             S---S--EEEECS--SCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE-EEEEE
T ss_pred             C---cceEEEcCC--CEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe-EEEEe
Confidence            2   222233444  333322 3334666666432 3332222  222   246667775 7888888876666 77889


Q ss_pred             CCCCcEEEec
Q 022387          288 TLDGTLLQEG  297 (298)
Q Consensus       288 ~~tg~~l~~~  297 (298)
                      ..+|+++..+
T Consensus       202 p~tG~V~~~i  211 (264)
T PF05096_consen  202 PETGKVVGWI  211 (264)
T ss_dssp             TTT-BEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999987654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.05  Score=49.35  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=67.5

Q ss_pred             EEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCC-CEE
Q 022387          196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG-QLL  273 (298)
Q Consensus       196 I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg-~~l  273 (298)
                      +++.+-.+++...-+..+...+..++|++...|.+.  .++-+.+|.|.|+.+.... .+.+| ..+++++|.-|. .++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~--~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLG--LASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceee--eeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence            666766666666555555556667788777644333  3799999999998877654 56667 899999999765 666


Q ss_pred             EEEeCCCCEEEEEECCCC
Q 022387          274 ATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       274 At~S~Dgt~IrIWd~~tg  291 (298)
                      -.|-..|. |.|||++.-
T Consensus       252 YaGl~nG~-VlvyD~R~~  268 (463)
T KOG1645|consen  252 YAGLQNGM-VLVYDMRQP  268 (463)
T ss_pred             EEeccCce-EEEEEccCC
Confidence            66667777 999999854

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.47  E-value=0.26  Score=42.51  Aligned_cols=91  Identities=12%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE-e-ecCCceEEEEE
Q 022387          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-L-SFRSEVRSVKL  183 (298)
Q Consensus       106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~-~-~~~~~v~~v~~  183 (298)
                      +..+.|+.++.+.+..... ....+..++..+....++.+++      .||.+.+||.++...... + .+..++..+-|
T Consensus       159 d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt------~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~F  231 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGT------DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHF  231 (319)
T ss_pred             cceeeeccccccccccccc-ccccchhhhCCcccccEEEEec------CCCeEEEEEcccccchHHHHHHhhhhhhheec
Confidence            4456788877665433332 1334555555555555555543      468999999988743222 2 23457888889


Q ss_pred             eC---CeEEEEE-CCeEEEEEcCC
Q 022387          184 RR---DRIIVVL-EQKIFVYNFAD  203 (298)
Q Consensus       184 ~~---~~l~v~~-~~~I~iwd~~~  203 (298)
                      |+   ..++++. +|.+..||-.+
T Consensus       232 Hpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  232 HPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cCCCchheeEecCCCcEEEEcCCC
Confidence            86   4677665 58999999654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.88  Score=38.14  Aligned_cols=173  Identities=10%  Similarity=0.088  Sum_probs=93.1

Q ss_pred             CCCEEEEEcC-C--eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe
Q 022387           96 DHGCFAAGTD-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (298)
Q Consensus        96 dg~~lasgs~-~--gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~  172 (298)
                      ||.++.+.+. +  .|++|++.+++.++...+. ...+..--...-++.+....      |.++...++|..+-+++.++
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LT------w~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLT------WKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEE------eccceeEEEChHHhhhhccc
Confidence            4555555554 3  2889999999988877762 01111000111234444444      35688899999999999999


Q ss_pred             ecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCC--CcceE-EEEeCCCCeEEE---------EecCCCc
Q 022387          173 SFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN--PKGLC-AVSQGVGSLVLV---------CPGLQKG  239 (298)
Q Consensus       173 ~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~--~~~~~-~~s~~~d~~~la---------~sGs~dg  239 (298)
                      .+.+.-..++-..+.+.... ...+.+-|-.+...+.+++...+  |+.-+ -+-+- ||.+.|         ---=..|
T Consensus       128 ~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         128 SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             ccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence            99988888887766644432 24566666655554444433211  11100 00000 111111         0012233


Q ss_pred             eEEE-EEcCCc--ceEeecccccceeEEEECCCC-CEEEEE
Q 022387          240 QVRV-EHYASK--RTKFIMAHDSRIACFALTQDG-QLLATS  276 (298)
Q Consensus       240 ~v~i-~~~~~~--~~~~~~~H~~~V~~l~fspdg-~~lAt~  276 (298)
                      .|.- .|+..-  ....-..|....+.||+.|++ ++++||
T Consensus       207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            3333 333321  112334566789999999987 777776

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.10  E-value=1.9  Score=39.38  Aligned_cols=174  Identities=13%  Similarity=0.086  Sum_probs=87.9

Q ss_pred             cCCCCEEEEEc----------CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           94 NQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        94 s~dg~~lasgs----------~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      |||+++++...          ...+-|||+.+.+..-...  .........++++++.++.+.        ++.|.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~~~~~v~--------~~nly~~~~   70 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP--PPPKLQDAKWSPDGKYIAFVR--------DNNLYLRDL   70 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SSSTEEEEEE--------TTEEEEESS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC--CccccccceeecCCCeeEEEe--------cCceEEEEC
Confidence            68899887733          2335578888865422211  135677888999999999987        477999998


Q ss_pred             CCCcEEEEeecCC-------------------ceEEEEEeCC--eEEEEE--CCeEEEEEc---CCCeEEEEEeccCCCc
Q 022387          164 HQSRCIGELSFRS-------------------EVRSVKLRRD--RIIVVL--EQKIFVYNF---ADLKLLHQIETIANPK  217 (298)
Q Consensus       164 ~~~~~~~~~~~~~-------------------~v~~v~~~~~--~l~v~~--~~~I~iwd~---~~~~~i~~~~~~~~~~  217 (298)
                      .+++.. .+...+                   .-.++.|+++  .++...  +..|+.+.+   .....        ..-
T Consensus        71 ~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------~yp  141 (353)
T PF00930_consen   71 ATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------QYP  141 (353)
T ss_dssp             TTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------SS-
T ss_pred             CCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------cCC
Confidence            777443 232211                   1234556654  333221  223333322   11100        000


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEee------cccccceeEEEECCCCCEEEEE--eCCCC--EEEE
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFI------MAHDSRIACFALTQDGQLLATS--STKGT--LVRI  285 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~~------~~H~~~V~~l~fspdg~~lAt~--S~Dgt--~IrI  285 (298)
                      ....+..       ..+|..+-.+.+  +++.+++...+      ..-...+..+.|+++++.|+..  +.+.+  .+.+
T Consensus       142 ~~~~~~Y-------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~  214 (353)
T PF00930_consen  142 EVESIRY-------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL  214 (353)
T ss_dssp             EEEEEE---------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE
T ss_pred             ccccccc-------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE
Confidence            1111111       113666666666  66665544222      2234579999999999834333  33332  2566


Q ss_pred             EECCCCcE
Q 022387          286 FNTLDGTL  293 (298)
Q Consensus       286 Wd~~tg~~  293 (298)
                      .|..+|++
T Consensus       215 ~d~~tg~~  222 (353)
T PF00930_consen  215 CDASTGET  222 (353)
T ss_dssp             EEECTTTC
T ss_pred             EECCCCce
Confidence            67776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.02  E-value=0.029  Score=47.23  Aligned_cols=134  Identities=13%  Similarity=0.168  Sum_probs=74.5

Q ss_pred             CCCeEEEEeCCCCcEE-EEeecCCceEEEEEeCCeEEEE-ECCeEEEEEcCCCeEE-EEEeccCCCcceEEEEeCCCCeE
Q 022387          154 PLNKVMIWDDHQSRCI-GELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~-~~~~~~~~v~~v~~~~~~l~v~-~~~~I~iwd~~~~~~i-~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      .++.|+-++++..+.. +.-.+...-..+.--...++++ .++.|.+|+....... ..+.....++.++ | +..+...
T Consensus        38 a~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-I-p~~~~~~  115 (238)
T KOG2444|consen   38 ADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-I-PNGRDSS  115 (238)
T ss_pred             CCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec-c-ccccccc
Confidence            4677777777654321 1112222222222223344444 4688888887522111 1111222222222 2 2222233


Q ss_pred             EEEecCCCceEEEEEcCCcceE-eecccc-cceeEEEECCCCCEEEEE--eCCCCEEEEEECCC
Q 022387          231 LVCPGLQKGQVRVEHYASKRTK-FIMAHD-SRIACFALTQDGQLLATS--STKGTLVRIFNTLD  290 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~-~~~~H~-~~V~~l~fspdg~~lAt~--S~Dgt~IrIWd~~t  290 (298)
                      +++.|..+|.|+-|..+..+.. ..-.|+ .++.....+..+++++.+  |.|.. ++.|++..
T Consensus       116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-~k~W~ve~  178 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-LKKWNVEK  178 (238)
T ss_pred             eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh-hhhcchhh
Confidence            5556899999999998876544 445566 567777777777888888  88887 88888764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.01  E-value=3.6  Score=41.92  Aligned_cols=195  Identities=15%  Similarity=0.236  Sum_probs=113.0

Q ss_pred             EEEcCCC--CEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCC-CCCC------CCCCeEEEE
Q 022387           91 ISFNQDH--GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQ------YPLNKVMIW  161 (298)
Q Consensus        91 v~fs~dg--~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~d~~v~iW  161 (298)
                      +.|+.+.  ..||.+..+++++.-++..+.+..+...-.....-++.......+++.+.- +...      ..-..++++
T Consensus       676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl  755 (1096)
T KOG1897|consen  676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL  755 (1096)
T ss_pred             cccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence            4455443  578888888889988887766655554212222333333223333333211 1000      001237888


Q ss_pred             eCCCCcEEEEeecCC-----ceEEEEEeCC---eEEEEE-----------CCeEEEEEcCCCeEEEEEeccCCCcceEEE
Q 022387          162 DDHQSRCIGELSFRS-----EVRSVKLRRD---RIIVVL-----------EQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (298)
Q Consensus       162 D~~~~~~~~~~~~~~-----~v~~v~~~~~---~l~v~~-----------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~  222 (298)
                      |-++-+.+...++..     .+.++.|..+   .+++++           .|.|.+|.....+.++....+.-...+.++
T Consensus       756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL  835 (1096)
T KOG1897|consen  756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL  835 (1096)
T ss_pred             cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence            888877666555432     3444456544   455554           268899888663333333322222223333


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .- .++.++|   +-+..|++++++.++ +..-..|..++..+...-.|..+|.|..=+. |.+-.++.
T Consensus       836 ~~-fngkllA---~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~  899 (1096)
T KOG1897|consen  836 VE-FNGKLLA---GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKG  899 (1096)
T ss_pred             hh-hCCeEEE---ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEec
Confidence            22 2347776   567799999998874 4455568888999999999999999977666 66655443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.95  E-value=0.025  Score=56.14  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCC-
Q 022387          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGT-  281 (298)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt-  281 (298)
                      .+..++|..+.....+++|+.+.  ..|++ |+..|.|+|++..++... ...+|.++|+-|.=|.||.++.|.|.-.. 
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~--~hL~v-G~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT--NHLAV-GSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC--ceEEe-eeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence            34445566555556667776654  67775 999999999999887654 78899999999999999987777754332 


Q ss_pred             EEEEEECCC-CcEEEec
Q 022387          282 LVRIFNTLD-GTLLQEG  297 (298)
Q Consensus       282 ~IrIWd~~t-g~~l~~~  297 (298)
                      +.-+|++.+ +...|+|
T Consensus      1168 lsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF 1184 (1516)
T ss_pred             hHHHhccccccCccccc
Confidence            467999875 4445554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.44  E-value=4.3  Score=37.94  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=71.9

Q ss_pred             cCCCCEEEEEc-------CCeEEEEEcCCCceEEEEeeecCCceEE--EEEecCCCEEEEEeCCCCC----CC-------
Q 022387           94 NQDHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGV--VEMLFRCNILALVGGGPDP----QY-------  153 (298)
Q Consensus        94 s~dg~~lasgs-------~~gi~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-------  153 (298)
                      -|+|..++++.       ..|+.+.|-++.+....++.........  .-+.+..+.++++..+.-.    .+       
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            46888877653       1347788888877766665311111111  2234556666665543210    00       


Q ss_pred             --CCCeEEEEeCCCCcEEEEeecCC---ceEEEEEeCC------eEEEEECCeEEEE-EcCCC----eEEEEEeccC---
Q 022387          154 --PLNKVMIWDDHQSRCIGELSFRS---EVRSVKLRRD------RIIVVLEQKIFVY-NFADL----KLLHQIETIA---  214 (298)
Q Consensus       154 --~d~~v~iWD~~~~~~~~~~~~~~---~v~~v~~~~~------~l~v~~~~~I~iw-d~~~~----~~i~~~~~~~---  214 (298)
                        --+++.+||+.+.+.++++....   ..+.|.|..+      +.-++...+|..| .-.++    +.+.++....   
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence              12679999999999999998863   4566766432      2333344455444 32332    2222332110   


Q ss_pred             C------------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387          215 N------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (298)
Q Consensus       215 ~------------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~  248 (298)
                      .            |..+..|.-+.|..+|-++.--.|.|+-||+..
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            0            223456555556688877889999999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=94.42  E-value=5.4  Score=38.97  Aligned_cols=60  Identities=10%  Similarity=-0.028  Sum_probs=35.7

Q ss_pred             eEEEEecCCC------ceEEEEEcCC-cc---eEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCc
Q 022387          229 LVLVCPGLQK------GQVRVEHYAS-KR---TKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGT  292 (298)
Q Consensus       229 ~~la~sGs~d------g~v~i~~~~~-~~---~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~  292 (298)
                      .+.++ |+.+      ..+..||-.+ +.   +..+.........+++  +|++.+.||.||  + +-.||..+.+
T Consensus       465 ~IYv~-GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~-~e~yd~~~~~  536 (557)
T PHA02713        465 DIYVV-CDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML-QDTFNVYTYE  536 (557)
T ss_pred             EEEEE-eCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee-hhhcCccccc
Confidence            66665 4433      1345577665 33   1233333333444444  789999999998  6 7888877653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.83  E-value=5.6  Score=36.97  Aligned_cols=202  Identities=12%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Ce-----EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC----CCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD-HG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----YPLN  156 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~g-----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~  156 (298)
                      .+...++||||++||.+-+ +|     ++|+|+++++.+.. .+. ......+.|..++..++...-.....    -...
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            3446889999999986632 22     67899999865432 221 11122378888877777665443110    0156


Q ss_pred             eEEEEeCCCCcEE--EEeec--CCc-eEEEEEeCC--eEEEEE----C-CeEEEEEcCCC----eEEEEEeccCCCcceE
Q 022387          157 KVMIWDDHQSRCI--GELSF--RSE-VRSVKLRRD--RIIVVL----E-QKIFVYNFADL----KLLHQIETIANPKGLC  220 (298)
Q Consensus       157 ~v~iWD~~~~~~~--~~~~~--~~~-v~~v~~~~~--~l~v~~----~-~~I~iwd~~~~----~~i~~~~~~~~~~~~~  220 (298)
                      .|+.|.+.+...-  .-+..  ... ...+..+.+  .+++..    + ..+.+.++.+.    ...+.+........ .
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-~  281 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE-Y  281 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E-E
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE-E
Confidence            7999998876432  22222  222 445666553  444432    2 46888888764    23333333222221 1


Q ss_pred             EEEeCCCCeEEEEec--CCCceEEEEEcCCcc----eEeecccccc--eeEEEECCCCCEEEEEeCCC-CEEEEEECCCC
Q 022387          221 AVSQGVGSLVLVCPG--LQKGQVRVEHYASKR----TKFIMAHDSR--IACFALTQDGQLLATSSTKG-TLVRIFNTLDG  291 (298)
Q Consensus       221 ~~s~~~d~~~la~sG--s~dg~v~i~~~~~~~----~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dg-t~IrIWd~~tg  291 (298)
                      .+...++ .+++.+.  ..++.|.-.++....    ...+..|...  +..+.... +.+++..-.++ ..|+|+++..+
T Consensus       282 ~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~  359 (414)
T PF02897_consen  282 YVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDG  359 (414)
T ss_dssp             EEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-T
T ss_pred             EEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCC
Confidence            2222232 3444332  334566556665433    2256666664  55554432 23444544444 23788888833


Q ss_pred             cE
Q 022387          292 TL  293 (298)
Q Consensus       292 ~~  293 (298)
                      ..
T Consensus       360 ~~  361 (414)
T PF02897_consen  360 KE  361 (414)
T ss_dssp             EE
T ss_pred             cE
Confidence            33

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.81  E-value=0.14  Score=50.74  Aligned_cols=112  Identities=13%  Similarity=0.068  Sum_probs=78.1

Q ss_pred             ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEEC---CeEEEEEcCCCe
Q 022387          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---QKIFVYNFADLK  205 (298)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~---~~I~iwd~~~~~  205 (298)
                      ...+..|.+...++++++=+..   .-|.|.|+- .+|+..+.+.++-.+.+++||+..++.+..   +.+.+|...+.+
T Consensus        17 vsti~SWHPsePlfAVA~fS~e---r~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPE---RGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             cccccccCCCCceeEEEEecCC---CCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            3455567777777777653221   336788874 456666677777788889999987766643   789999987665


Q ss_pred             EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC
Q 022387          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (298)
Q Consensus       206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~  247 (298)
                      .-....+|..++..+.+++++  ..+. ++..-|.|.+|...
T Consensus        93 ~htv~~th~a~i~~l~wS~~G--~~l~-t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDG--TVLM-TLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCC--CeEE-EcCCCceeEEEEee
Confidence            433344577777777777665  6666 58999999998765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.70  E-value=6  Score=36.86  Aligned_cols=199  Identities=12%  Similarity=0.159  Sum_probs=100.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEE-------------------------EEeee---------------
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF-------------------------RRDFE---------------  125 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~-------------------------~~~~~---------------  125 (298)
                      .|+.++|.++..-||+|...| +.||.+...+..-                         -...+               
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            589999999988899998866 7777543211100                         00000               


Q ss_pred             --cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC---------ceEEEEEe-----CC---
Q 022387          126 --RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS---------EVRSVKLR-----RD---  186 (298)
Q Consensus       126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~---------~v~~v~~~-----~~---  186 (298)
                        ..+.+..++.+ +-..+|++-       .+|.+.|.|++....+..-....         .+.++.|.     .+   
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy-------~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGY-------ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEE-------TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             eccCCcEeEEecC-CCcEEEEEe-------cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence              12333444432 333444544       67999999998777766533222         46666663     22   


Q ss_pred             --eEEEEEC-CeEEEEEcC--C-CeE----EEEEeccCCCcc-eEEEEeCC-------------------CCeEEEEecC
Q 022387          187 --RIIVVLE-QKIFVYNFA--D-LKL----LHQIETIANPKG-LCAVSQGV-------------------GSLVLVCPGL  236 (298)
Q Consensus       187 --~l~v~~~-~~I~iwd~~--~-~~~----i~~~~~~~~~~~-~~~~s~~~-------------------d~~~la~sGs  236 (298)
                        .++++++ |.+.+|.+.  . +.-    ......+..++. ++.|..+.                   ...++++  .
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv--v  232 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV--V  232 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE--E
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE--E
Confidence              4555565 888888773  1 111    111112222222 23343221                   0123332  2


Q ss_pred             CCceEEEEEcCCcc-eE-eecccccceeEEEE-----CCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKR-TK-FIMAHDSRIACFAL-----TQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~-~~~~H~~~V~~l~f-----spdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+..+++...-..+ .. .+ ...-....+++     ...+..|++--.||. |+++.+..-+.+.++
T Consensus       233 Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS-IRIYSLPSLKEIKSV  298 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE-EEEEETTT--EEEEE
T ss_pred             cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc-EEEEECCCchHhhcc
Confidence            34566775554332 22 33 22223334444     246788999999999 999999998887654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.69  E-value=2.3  Score=40.34  Aligned_cols=130  Identities=17%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC---------eEEEE-ECCeEEEEEcC-CCeEEEEEeccCCCcceEEEE
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIVV-LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVS  223 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------~l~v~-~~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s  223 (298)
                      ...+.--|++.|+.+-++..+..| -+.+++.         ..+++ .+..|.-.|-+ .+..+..... .....-..|+
T Consensus       489 ~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-KdY~tKn~Fs  566 (776)
T COG5167         489 RDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-KDYKTKNKFS  566 (776)
T ss_pred             cccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-hhcccccccc
Confidence            466788899999999999888777 5556553         33333 45566666663 2222222111 1111111222


Q ss_pred             eC--CCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          224 QG--VGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       224 ~~--~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..  -...++|+ |+..|-|+++|.-....+ .+.+-..+|-.|..+.+|+++...+ ... +-+-|++
T Consensus       567 s~~tTesGyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~y-llL~d~~  632 (776)
T COG5167         567 SGMTTESGYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNY-LLLTDVP  632 (776)
T ss_pred             ccccccCceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cce-EEEEecc
Confidence            11  12367775 899999999887665554 5677888999999999998776665 344 6677754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.57  E-value=7.6  Score=37.66  Aligned_cols=141  Identities=16%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCC-----ceEE-EEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccCCCc---
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK---  217 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~-----~v~~-v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~~~~---  217 (298)
                      .++.|.-.|.++++.+-+.....     .+.+ -....+.+++..       ++.|..+|.++++.+.++.......   
T Consensus       128 ~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~  207 (527)
T TIGR03075       128 LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL  207 (527)
T ss_pred             CCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence            46889999999998876654321     1111 112345555543       4689999999999988776532110   


Q ss_pred             ------------------------c---eEEEEeCCCCeEEEE-ecC---CCc-----------eEEEEEcCCcceE-ee
Q 022387          218 ------------------------G---LCAVSQGVGSLVLVC-PGL---QKG-----------QVRVEHYASKRTK-FI  254 (298)
Q Consensus       218 ------------------------~---~~~~s~~~d~~~la~-sGs---~dg-----------~v~i~~~~~~~~~-~~  254 (298)
                                              +   =...+.|++..++.+ +|.   .++           .|.--|.++.+++ .+
T Consensus       208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~  287 (527)
T TIGR03075       208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY  287 (527)
T ss_pred             cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence                                    0   012244443333322 222   112           2222455555543 33


Q ss_pred             c--ccc-------cceeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEE
Q 022387          255 M--AHD-------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       255 ~--~H~-------~~V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      +  .|+       ....-+.+-.+|+   .++.+..+|. +.+.|-++|+.+.
T Consensus       288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i~  339 (527)
T TIGR03075       288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLLS  339 (527)
T ss_pred             eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCceec
Confidence            2  232       1222233335776   8889999998 9999999999873

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.33  E-value=4.6  Score=39.55  Aligned_cols=130  Identities=16%  Similarity=0.228  Sum_probs=69.7

Q ss_pred             CCeEEEEeCCCCcEEEE--eecCCceEEEEEeCCeEEEEEC--------CeEEEEEcCCC--eEEEEEeccCCCcceEEE
Q 022387          155 LNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADL--KLLHQIETIANPKGLCAV  222 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~--~~~~~~v~~v~~~~~~l~v~~~--------~~I~iwd~~~~--~~i~~~~~~~~~~~~~~~  222 (298)
                      -++|-.||..+.+....  ......-.+++.....+.+++.        +++..||..+.  +.+..+.......++..+
T Consensus       395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence            36688999887654322  1111222334444555555432        47889998543  333333333333333332


Q ss_pred             EeCCCCeEEEEecCCCc-----eEEEEEcCCcceEe---ecccccceeEEEECCCCCEEEEEeCCCC----EEEEEECCC
Q 022387          223 SQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLD  290 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg-----~v~i~~~~~~~~~~---~~~H~~~V~~l~fspdg~~lAt~S~Dgt----~IrIWd~~t  290 (298)
                          ++.+.++ |+.||     .|..+|..+++-..   +....+.+..+..  ++++.|.|+.||.    .|..||..+
T Consensus       475 ----~~~iYvv-GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  475 ----NGKIYVV-GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ----CCEEEEE-CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence                2367776 77666     25557776655332   2223333333333  6789999999983    266666555


Q ss_pred             C
Q 022387          291 G  291 (298)
Q Consensus       291 g  291 (298)
                      .
T Consensus       548 d  548 (571)
T KOG4441|consen  548 D  548 (571)
T ss_pred             C
Confidence            4

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.20  E-value=8.1  Score=37.00  Aligned_cols=138  Identities=11%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCc-------e--EEEEEeC-CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC------
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSE-------V--RSVKLRR-DRIIVVL-EQKIFVYNFADLKLLHQIETIANP------  216 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~-------v--~~v~~~~-~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~------  216 (298)
                      .++.|.-.|..+++.+-+++....       +  ..+.... +.+++.. ++.|..+|..+++.+.++......      
T Consensus        69 ~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i  148 (488)
T cd00216          69 SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTM  148 (488)
T ss_pred             CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEe
Confidence            357788888888877655543221       1  1123333 5666554 589999999999999887754321      


Q ss_pred             cceEEEEeCCCCeEEEEecC---------CCceEEEEEcCCcceE-eeccc-c-------------------cce-eEEE
Q 022387          217 KGLCAVSQGVGSLVLVCPGL---------QKGQVRVEHYASKRTK-FIMAH-D-------------------SRI-ACFA  265 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs---------~dg~v~i~~~~~~~~~-~~~~H-~-------------------~~V-~~l~  265 (298)
                      .....+..   +.+++  |+         .+|.+.-.|..+.+.. .+... .                   ..| ...+
T Consensus       149 ~ssP~v~~---~~v~v--g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa  223 (488)
T cd00216         149 TGAPTIVK---KLVII--GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPT  223 (488)
T ss_pred             cCCCEEEC---CEEEE--eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCee
Confidence            11122221   23333  33         2466666666554432 32211 0                   011 2345


Q ss_pred             ECCCCCEEEEEeCCC------------------CEEEEEECCCCcEEEec
Q 022387          266 LTQDGQLLATSSTKG------------------TLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       266 fspdg~~lAt~S~Dg------------------t~IrIWd~~tg~~l~~~  297 (298)
                      +.+.+.++..++.|+                  . |.-+|.++|+++.+|
T Consensus       224 ~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~-l~Ald~~tG~~~W~~  272 (488)
T cd00216         224 YDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS-IVALDADTGKVKWFY  272 (488)
T ss_pred             EeCCCCEEEEECCCCCCCccCCccCCCCCCceee-EEEEcCCCCCEEEEe
Confidence            555555566665454                  6 888999999998765

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.99  E-value=0.46  Score=48.41  Aligned_cols=106  Identities=25%  Similarity=0.315  Sum_probs=64.1

Q ss_pred             ceEEEEEeCCeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEe
Q 022387          177 EVRSVKLRRDRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF  253 (298)
Q Consensus       177 ~v~~v~~~~~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~  253 (298)
                      .+.+.+.-...++++++ +.|...|.+. ..+.+.=.....++.+++|+.++  .+++ .|-.+|.|.+||...++ ++.
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg--~~l~-~G~~~G~V~v~D~~~~k~l~~  167 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG--SLLL-AGLGDGHVTVWDMHRAKILKV  167 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC--ceec-cccCCCcEEEEEccCCcceee
Confidence            34444555556677776 6777777754 22222222233456666666654  7777 49999999999998754 455


Q ss_pred             ecccccceeEEEE---CCCCCEEEEEeCCCCEEEEEEC
Q 022387          254 IMAHDSRIACFAL---TQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       254 ~~~H~~~V~~l~f---spdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      +..|..+++.+-+   ..++..+.|+..-|.   +|.+
T Consensus       168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs---f~~l  202 (1206)
T KOG2079|consen  168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS---FWKL  202 (1206)
T ss_pred             eeecCCccceEEEEEEeCCCcEEEEccCCCc---eEEE
Confidence            6666555444433   344556667654444   7764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.76  E-value=8.5  Score=36.00  Aligned_cols=29  Identities=14%  Similarity=0.312  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCD  114 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~  114 (298)
                      +.|.++.|+.+.++++.-.++.+++||+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            58999999998887777767778899875

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.72  E-value=6.3  Score=34.34  Aligned_cols=93  Identities=10%  Similarity=0.093  Sum_probs=61.1

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceEEEE-EeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVK-LRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~-~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      ..+.++--|.++|..+-+.....++-+-+ .-.+++++.. .+.+.+.+..++.++..+..... +.+-+ -.+.++.++
T Consensus        31 Hs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a-~~d~~~glI  108 (354)
T KOG4649|consen   31 HSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRA-QCDFDGGLI  108 (354)
T ss_pred             CCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh-hccce-EEcCCCceE
Confidence            45778888999988877655554443322 2345555543 68999999999988888776433 22222 224455666


Q ss_pred             EEecCCCceEEEEEcCCc
Q 022387          232 VCPGLQKGQVRVEHYASK  249 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~  249 (298)
                      -+ |+.|+....-|.+..
T Consensus       109 yc-gshd~~~yalD~~~~  125 (354)
T KOG4649|consen  109 YC-GSHDGNFYALDPKTY  125 (354)
T ss_pred             EE-ecCCCcEEEeccccc
Confidence            65 999999998776654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.67  E-value=1.8  Score=43.73  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=78.2

Q ss_pred             CCCCEEEEE-cC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCC------CEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           95 QDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------NILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        95 ~dg~~lasg-s~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      .|.++|.-. .+ +.+.-.|++.++.+-.+.+  ...+.+..+.++.      +...++|      .+++.+..||.+-.
T Consensus       491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~--~~~~~v~~~~p~~K~aqlt~e~tflG------ls~n~lfriDpR~~  562 (794)
T PF08553_consen  491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKV--HDDIPVVDIAPDSKFAQLTNEQTFLG------LSDNSLFRIDPRLS  562 (794)
T ss_pred             cccceEeecCCCCCceEEEecCCCcEEEEeec--CCCcceeEecccccccccCCCceEEE------ECCCceEEeccCCC
Confidence            344554443 23 4455667788888878876  3334355554431      1122223      25688999998863


Q ss_pred             c--EEEE----eecCCceEEEEEeCC-eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          167 R--CIGE----LSFRSEVRSVKLRRD-RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       167 ~--~~~~----~~~~~~v~~v~~~~~-~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      .  ++..    +.......|++...+ .++++. .|.||+||-...+.-..|.+-..|+..++++.++  .++++  ..+
T Consensus       563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DG--kwila--Tc~  638 (794)
T PF08553_consen  563 GNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADG--KWILA--TCK  638 (794)
T ss_pred             CCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCC--cEEEE--eec
Confidence            2  3321    112235667777665 455554 4899999954333223344445676666776655  77773  555


Q ss_pred             ceEEEEE
Q 022387          239 GQVRVEH  245 (298)
Q Consensus       239 g~v~i~~  245 (298)
                      ..+.+.+
T Consensus       639 tyLlLi~  645 (794)
T PF08553_consen  639 TYLLLID  645 (794)
T ss_pred             ceEEEEE
Confidence            6666644

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.22  E-value=0.095  Score=52.28  Aligned_cols=59  Identities=22%  Similarity=0.464  Sum_probs=43.8

Q ss_pred             eEEEEecCCCceEEEEEcCCcceEeecccccceeEEE-----------ECCCCCEEEEEeCCCCEEEEEECC
Q 022387          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~-----------fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .++.+ |..+|.|++-.++......+++|...+..++           .||||+.||+++.||. ++.|.+.
T Consensus       196 ~~ic~-~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy  265 (1283)
T KOG1916|consen  196 VYICY-GLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY  265 (1283)
T ss_pred             ceeee-ccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence            55554 8888999984444433355667877666654           6899999999999998 8888765

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.11  E-value=2.6  Score=44.10  Aligned_cols=135  Identities=11%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             CCCeEEEEeCCCCcEEEEeec-CCceEEEEE-eC----------CeEEEEECCeEEEEEcCC----Ce---EEEEEeccC
Q 022387          154 PLNKVMIWDDHQSRCIGELSF-RSEVRSVKL-RR----------DRIIVVLEQKIFVYNFAD----LK---LLHQIETIA  214 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~-~~~v~~v~~-~~----------~~l~v~~~~~I~iwd~~~----~~---~i~~~~~~~  214 (298)
                      .|+.+.+|+.+++.....+.. .+.|..|.. .+          ..+++++--.|.++-+.-    +.   ....++...
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            469999999999766666554 345666543 22          145556666777775521    11   111122223


Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEE-EEcC----Cc-----------------ceEeec-ccccceeEEEECCCCC
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYA----SK-----------------RTKFIM-AHDSRIACFALTQDGQ  271 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i-~~~~----~~-----------------~~~~~~-~H~~~V~~l~fspdg~  271 (298)
                      ..+.+.++....+|.++. +|-+++.-.+ |...    .+                 .+..+. .|..+|..|++...-.
T Consensus       177 dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             CCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            345555555555667666 3444433333 3321    01                 011334 6778999999999999


Q ss_pred             EEEEEeCCCCEEEEEECCC
Q 022387          272 LLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       272 ~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .|-+-++.|+ |++||+..
T Consensus       256 IlY~lsek~~-v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGT-VSAYDIGG  273 (1311)
T ss_pred             eeeeeccCce-EEEEEccC
Confidence            9999999999 99999986

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.78  E-value=11  Score=35.24  Aligned_cols=133  Identities=13%  Similarity=0.071  Sum_probs=81.4

Q ss_pred             CCCeEEEEeCCCCc-----EEEEeecCCceEEEEEeC-------CeEEEEECCeEEEEEcC--CCe-------EEEEEec
Q 022387          154 PLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-------DRIIVVLEQKIFVYNFA--DLK-------LLHQIET  212 (298)
Q Consensus       154 ~d~~v~iWD~~~~~-----~~~~~~~~~~v~~v~~~~-------~~l~v~~~~~I~iwd~~--~~~-------~i~~~~~  212 (298)
                      ..|.+||++...+.     .+.+.+...+|..+....       ..+++..-.++.||.+.  ++.       .+..+..
T Consensus        45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye  124 (418)
T PF14727_consen   45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE  124 (418)
T ss_pred             cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence            56999999986533     566778888999987542       35666667899999882  111       2222223


Q ss_pred             cCCCcceEEEE---eCC-C-CeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          213 IANPKGLCAVS---QGV-G-SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       213 ~~~~~~~~~~s---~~~-d-~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      |.-+...+.+.   +.+ . ..++. .=+-||.+.+++-+.-....+...---...|+|.+.-..|++++.+.. +.-+.
T Consensus       125 h~l~~~a~nm~~G~Fgg~~~~~~Ic-VQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~-l~~Yk  202 (418)
T PF14727_consen  125 HSLQRTAYNMCCGPFGGVKGRDFIC-VQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT-LECYK  202 (418)
T ss_pred             EecccceeEEEEEECCCCCCceEEE-EEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee-EEEec
Confidence            33222222222   211 1 13343 368899999988765443322222334566778888888888888877 77766


Q ss_pred             C
Q 022387          288 T  288 (298)
Q Consensus       288 ~  288 (298)
                      +
T Consensus       203 y  203 (418)
T PF14727_consen  203 Y  203 (418)
T ss_pred             H
Confidence            4

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.74  E-value=11  Score=38.53  Aligned_cols=177  Identities=12%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             EEEEEcCCCceEEEEeeec-CCceEEEE--EecCCCEEEEEeCCCCC----CCCCCeEEEEeCCCC---cEEEEeecCCc
Q 022387          108 FRIYNCDPFREIFRRDFER-GGGIGVVE--MLFRCNILALVGGGPDP----QYPLNKVMIWDDHQS---RCIGELSFRSE  177 (298)
Q Consensus       108 i~vw~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~d~~v~iWD~~~~---~~~~~~~~~~~  177 (298)
                      ++++|-.+.+.+...++.. +....++.  +.-+++...++|.+...    .-..|.|.|+.+...   +.+.+....+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            4567766666555554421 11222332  33344455555433210    002366888877663   33445556677


Q ss_pred             eEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEe--
Q 022387          178 VRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKF--  253 (298)
Q Consensus       178 v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~--  253 (298)
                      |.++..-..+++++.+..|++|++.+.+.++.-..+..+...+.+...+  ..+++ |.--+.+.+  +.-..+....  
T Consensus       832 v~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g--deI~V-gDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  832 VYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKG--DEIAV-GDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             eeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecC--cEEEE-eeccceEEEEEEeccCCceEEee
Confidence            8887766778888888999999998886666545566666677776655  55654 788888888  4433333332  


Q ss_pred             ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       254 ~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      -..|..-++++.+-.+..+|. +-.+|. +.+-...
T Consensus       909 rD~~p~Wmtaveil~~d~ylg-ae~~gN-lf~v~~d  942 (1096)
T KOG1897|consen  909 RDYNPNWMTAVEILDDDTYLG-AENSGN-LFTVRKD  942 (1096)
T ss_pred             hhhCccceeeEEEecCceEEe-eccccc-EEEEEec
Confidence            235667788888866555443 445676 6555433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.72  E-value=0.057  Score=51.79  Aligned_cols=130  Identities=8%  Similarity=0.169  Sum_probs=79.0

Q ss_pred             CCCeEEEEeCCCCcEE-EEe--ecCCceEEEEEeCC---eEEEEEC-----CeEEEEEcCCC--eEEE--EEeccCCCcc
Q 022387          154 PLNKVMIWDDHQSRCI-GEL--SFRSEVRSVKLRRD---RIIVVLE-----QKIFVYNFADL--KLLH--QIETIANPKG  218 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~-~~~--~~~~~v~~v~~~~~---~l~v~~~-----~~I~iwd~~~~--~~i~--~~~~~~~~~~  218 (298)
                      .+|.|-+-.++...-- .++  .+.....+++|++-   .++++.+     ..+.|||+.+.  .+..  .|.+ ..-.+
T Consensus        78 atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~-~~l~g  156 (783)
T KOG1008|consen   78 ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS-STLDG  156 (783)
T ss_pred             ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc-ccccC
Confidence            4577877776543211 222  23346778888763   4554433     48999999654  2211  1222 01111


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEE
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd  287 (298)
                      .-.+++.-+..++. +|.....+.+.|+.........-.+..|..+..+| .+.|+++.+ ||. |-|||
T Consensus       157 qns~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~-iAiwD  223 (783)
T KOG1008|consen  157 QNSVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGD-IAIWD  223 (783)
T ss_pred             ccccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCc-eeecc
Confidence            22455554445555 59988899998876443332233445678888898 889999988 887 99999

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.71  E-value=5.8  Score=39.86  Aligned_cols=120  Identities=13%  Similarity=0.170  Sum_probs=77.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEE-EEEcCCCceE---EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~-vw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      +.++.+++.+.|-+.+|+|-.+|.+ .+.-+..+..   .......+.+++.+.+..++..+.++.       ....|.+
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-------Tt~~V~~  197 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-------TTEQVML  197 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-------ecceeEE
Confidence            4589999999999999999998854 5533322111   111111255677777766666533444       2367999


Q ss_pred             EeCCCCcE-EEEeecCC-ceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEe
Q 022387          161 WDDHQSRC-IGELSFRS-EVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIE  211 (298)
Q Consensus       161 WD~~~~~~-~~~~~~~~-~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~  211 (298)
                      +.+..... ...+..++ ...|..+++.  .++++.+.-+.+|+....++.-+|.
T Consensus       198 y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  198 YSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence            99885442 33344443 6778888753  3667777899999998777766776

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.51  E-value=11  Score=34.30  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=40.2

Q ss_pred             eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce
Q 022387          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~  251 (298)
                      .|-+||+.+.+.+.++... .++.++.++.+..-.++++ ...+|.+.++|..+.+.
T Consensus       270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~-~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYAL-SAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEE-ETTTTEEEEEETTT--E
T ss_pred             EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEE-cCCCCeEEEEeCcCCcE
Confidence            7999999999999998853 3466788888765455554 45689999999877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.44  E-value=2.1  Score=40.70  Aligned_cols=146  Identities=10%  Similarity=0.061  Sum_probs=82.5

Q ss_pred             EcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE-E
Q 022387           93 FNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC-I  169 (298)
Q Consensus        93 fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~-~  169 (298)
                      ...+.++|. +|.. +++.-.|++.++.+-.+.+  +..+..+.+.++...-.+.+.+.-...+++.|.-||.+-... .
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeec--cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence            344555544 5554 7777778899999888887  556777777655433322222222223678899999874221 1


Q ss_pred             EEe----ecC--CceEEEEEeC-CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387          170 GEL----SFR--SEVRSVKLRR-DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       170 ~~~----~~~--~~v~~v~~~~-~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      ..+    ++.  ....|.+... ..++++. +|.||+||-.....-.-+.+-..++.-+.++.++  .+|+  |..+..+
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadG--Kwil--~Tc~tyL  494 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADG--KWIL--ATCKTYL  494 (644)
T ss_pred             eeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccC--cEEE--EecccEE
Confidence            111    121  2344444444 4555554 5899999973222222344455566666666655  6666  3555555


Q ss_pred             EEE
Q 022387          242 RVE  244 (298)
Q Consensus       242 ~i~  244 (298)
                      .+-
T Consensus       495 lLi  497 (644)
T KOG2395|consen  495 LLI  497 (644)
T ss_pred             EEE
Confidence            553

>PHA03098 kelch-like protein; Provisional

Probab=91.21  E-value=15  Score=35.47  Aligned_cols=130  Identities=13%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             CeEEEEeCCCCcEEEEee--cCCceEEEEEeCCeEEEEEC--------CeEEEEEcCCCeEEEEEeccCCC-cceEEEEe
Q 022387          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANP-KGLCAVSQ  224 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~--~~~~v~~v~~~~~~l~v~~~--------~~I~iwd~~~~~~i~~~~~~~~~-~~~~~~s~  224 (298)
                      +.+..||..+++....-.  ....-.++....+.+.+.+.        +.+..||..+.+= ..+.....+ ....++..
T Consensus       358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~  436 (534)
T PHA03098        358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYH  436 (534)
T ss_pred             ceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEE
Confidence            568889988765432211  11112223334455555432        4688888865432 111111111 11223333


Q ss_pred             CCCCeEEEEecCCC-------ceEEEEEcCCcceEee---cccccceeEEEECCCCCEEEEEeCC-----CCEEEEEECC
Q 022387          225 GVGSLVLVCPGLQK-------GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTL  289 (298)
Q Consensus       225 ~~d~~~la~sGs~d-------g~v~i~~~~~~~~~~~---~~H~~~V~~l~fspdg~~lAt~S~D-----gt~IrIWd~~  289 (298)
                      +  +.++++.|..+       ..+.++|..+..=..+   .........+.+  ++++++.||.+     +. |.++|..
T Consensus       437 ~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~  511 (534)
T PHA03098        437 D--GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDDK  511 (534)
T ss_pred             C--CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeCC
Confidence            3  35666533221       1366677665432221   111111222233  78888888875     35 8888887


Q ss_pred             CC
Q 022387          290 DG  291 (298)
Q Consensus       290 tg  291 (298)
                      +.
T Consensus       512 ~~  513 (534)
T PHA03098        512 TN  513 (534)
T ss_pred             CC
Confidence            65

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.94  E-value=17  Score=35.75  Aligned_cols=185  Identities=10%  Similarity=0.065  Sum_probs=92.9

Q ss_pred             CeEEEEEcCCCCEEEEEc------CCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC-----CC
Q 022387           87 TLLHISFNQDHGCFAAGT------DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-----YP  154 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs------~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  154 (298)
                      .+...+++|||+.+|.-.      ++. -.||-....+.......  ......-.|++++..+.++..+....     ..
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            678899999999877544      232 34665443332212211  22344445666666666654321000     01


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEc---CCCeEEEEEe----ccCCCcc-eEEEEe
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNF---ADLKLLHQIE----TIANPKG-LCAVSQ  224 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~---~~~~~i~~~~----~~~~~~~-~~~~s~  224 (298)
                      .+.+.+.++..+....  .+...|..+.|+++  ++++..+++|.+=-+   ..++  .++.    ....... ...+.+
T Consensus       429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceE
Confidence            2344444555544332  44557899999875  555556777776332   3343  2221    0111111 245566


Q ss_pred             CCCCeEEEEecCCCceEEEEEcC--CcceEeecc--cccceeEEEECCCCCEEEEEeCCCC
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGT  281 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt  281 (298)
                      -.++.+++  +..++...+|.+.  ......+..  ....|..|+=+++ .++++- .++.
T Consensus       505 ~~~~~L~V--~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~-~~g~  561 (591)
T PRK13616        505 RTGDSLVV--GRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTD-ARAV  561 (591)
T ss_pred             ecCCEEEE--EecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEc-CCce
Confidence            66667655  3444444444433  222222233  3567888888874 455443 3543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.89  E-value=18  Score=35.75  Aligned_cols=73  Identities=15%  Similarity=0.031  Sum_probs=42.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEE-EEEcC---CCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFR-IYNCD---PFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~-vw~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+..+..|++..++|.|++.|.+ |+-+.   +....+...+.  |...+.+++|+.+...+....       ..|+|.
T Consensus        77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-------~~Gkv~  149 (726)
T KOG3621|consen   77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-------SQGKVV  149 (726)
T ss_pred             ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecC-------CCceEE
Confidence            356677789999999999998855 55332   22333444332  344566666666555444432       346666


Q ss_pred             EEeCCC
Q 022387          160 IWDDHQ  165 (298)
Q Consensus       160 iWD~~~  165 (298)
                      +-.+.+
T Consensus       150 ~~~L~s  155 (726)
T KOG3621|consen  150 LTELDS  155 (726)
T ss_pred             EEEech
Confidence            655544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.70  E-value=0.5  Score=45.85  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=29.6

Q ss_pred             cceeEEEECC----CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          259 SRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       259 ~~V~~l~fsp----dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..+..++++.    +..+|++-+.|++ +||||+.+++++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEe
Confidence            3566677776    6789999999999 999999999998763

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.70  E-value=12  Score=33.55  Aligned_cols=97  Identities=19%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             EEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--c----c--eEeecccccceeEEEECC
Q 022387          198 VYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K----R--TKFIMAHDSRIACFALTQ  268 (298)
Q Consensus       198 iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~----~--~~~~~~H~~~V~~l~fsp  268 (298)
                      +|-+. .+..++-+..+-.....++||+++...++  +-+..+.|.-+++..  .    +  ...+..+.+..-.++...
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~--aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV--ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE--EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            44443 44444444433333345677776643333  356666766665541  1    1  123334567788889999


Q ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.+.+++-.+|..|.+|+.. |+++.++
T Consensus       223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             CCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            999997666666239999988 9988775

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.30  E-value=12  Score=33.02  Aligned_cols=197  Identities=18%  Similarity=0.169  Sum_probs=103.2

Q ss_pred             CeEEEEEcCCCC-EEEEEcC-CeE-EEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           87 TLLHISFNQDHG-CFAAGTD-HGF-RIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        87 ~V~~v~fs~dg~-~lasgs~-~gi-~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      +...|+|+|-.. -++.+-. ++. .++|....+........ ..+=.+.-.+++++.+|...-.+.+.  .-|-|-|||
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~--~rGViGvYd  146 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP--NRGVIGVYD  146 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC--CCceEEEEe
Confidence            455688888654 4667766 444 48887766544333321 11223344567777776654433332  347799999


Q ss_pred             CCCC-cEEEEeecCC-ceEEEEEeCC-eEEEEECCeEEEE--------------------EcCCCeEEEEEecc--CCCc
Q 022387          163 DHQS-RCIGELSFRS-EVRSVKLRRD-RIIVVLEQKIFVY--------------------NFADLKLLHQIETI--ANPK  217 (298)
Q Consensus       163 ~~~~-~~~~~~~~~~-~v~~v~~~~~-~l~v~~~~~I~iw--------------------d~~~~~~i~~~~~~--~~~~  217 (298)
                      .+.+ +.+.++..++ -...+.+..+ ++++..++.|..-                    |-.+++++.+..-.  ....
T Consensus       147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            9864 4455665443 2233444433 3333334434333                    32233333221111  1111


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEE-EEcC---------------CcceE-------eecccccceeEEEECCCCCEEE
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRV-EHYA---------------SKRTK-------FIMAHDSRIACFALTQDGQLLA  274 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i-~~~~---------------~~~~~-------~~~~H~~~V~~l~fspdg~~lA  274 (298)
                      .+         ..++.  ..||+|.. -.+.               .+++.       +..+-...|-+|+.+.+..+++
T Consensus       227 Si---------RHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~  295 (366)
T COG3490         227 SI---------RHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA  295 (366)
T ss_pred             ce---------eeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence            11         22332  34444444 2211               12221       1122345789999997777777


Q ss_pred             EEeCCCCEEEEEECCCCcEEEe
Q 022387          275 TSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       275 t~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ..|-.|...-|||..+|.++.+
T Consensus       296 lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         296 LTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             EecCCCCeEEEEEcCCCcEEec
Confidence            7777777789999999988754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.28  E-value=13  Score=33.26  Aligned_cols=187  Identities=11%  Similarity=0.139  Sum_probs=81.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeec-CC--ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-GG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ...+..|.|..+..-+|+|....  |+....++......... ..  ......+.+......+++       ..+ +.+-
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-------~~g-~ll~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-------EPG-LLLH   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-------ETT-EEEE
T ss_pred             CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-------CCc-eEEE
Confidence            34899999997677788887654  44444433222221100 11  223333344444444444       223 3333


Q ss_pred             eCCCCcEEEEeec----CCceEEEE-EeCCeEEEEECCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          162 DDHQSRCIGELSF----RSEVRSVK-LRRDRIIVVLEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       162 D~~~~~~~~~~~~----~~~v~~v~-~~~~~l~v~~~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      -...++.-..+..    ......+. +.+....+++.. =.||...+ ++.-+.+.. ........+...+|+.++++  
T Consensus        86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav--  161 (302)
T PF14870_consen   86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV--  161 (302)
T ss_dssp             ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE--
T ss_pred             ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE--
Confidence            3334443333322    22333333 334433333332 22333322 222111111 12233445666778899986  


Q ss_pred             CCCceEEE-EEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          236 LQKGQVRV-EHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       236 s~dg~v~i-~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +..|.+.. |+-....-. .-+.-...|.+|.|+|++.+.+.+ ..|. |+.=+
T Consensus       162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~  213 (302)
T PF14870_consen  162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSD  213 (302)
T ss_dssp             ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE
T ss_pred             ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEcc
Confidence            56677766 776543222 223345789999999999887766 5665 76655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.69  E-value=22  Score=35.12  Aligned_cols=98  Identities=16%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec--CCceEEEEEeC-----CeEEEEECCeEEEEEcC---------
Q 022387          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRR-----DRIIVVLEQKIFVYNFA---------  202 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~-----~~l~v~~~~~I~iwd~~---------  202 (298)
                      .+.++++..+      ..++.|||.+.+....+-.+  ...|..++|..     ..++|+..+.|.+|.-.         
T Consensus        40 ~~k~a~V~~~------~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   40 IKKIAVVDSS------RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             cCcEEEEECC------CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            4556666532      36799999999887666555  66898888853     24555667888888531         


Q ss_pred             CCeEEEEEeccC-CCcceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387          203 DLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (298)
Q Consensus       203 ~~~~i~~~~~~~-~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~  245 (298)
                      ....++++.... .+..+-+..+-++|.+++.  +. ..+.|++
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~--sG-Nqlfv~d  154 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG--SG-NQLFVFD  154 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEE--eC-CEEEEEC
Confidence            233455554321 1122335555566677763  32 2555544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.64  E-value=8.2  Score=30.01  Aligned_cols=111  Identities=13%  Similarity=0.152  Sum_probs=65.4

Q ss_pred             EEEEcCCCCEEEEEcC-CeEEEEEcCCC--------ceEEEEeeecCCceEEEEEe-c----CCCEEEEEeCCCCCCCCC
Q 022387           90 HISFNQDHGCFAAGTD-HGFRIYNCDPF--------REIFRRDFERGGGIGVVEML-F----RCNILALVGGGPDPQYPL  155 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~-~gi~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~d  155 (298)
                      .-.|....-.|++++. +.|.|++....        ..+..+.+  +..+.+++.. +    ..+.|++ +       ..
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~Lli-G-------t~   72 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLI-G-------TQ   72 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEE-e-------cc
Confidence            3456555667888877 55777764322        22334444  5566666542 2    2334444 4       35


Q ss_pred             CeEEEEeCCCCcEEEEeecCCceEEEEEe-----CCeEEE-EECCeEEEEEcCCCeEEEEE
Q 022387          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLR-----RDRIIV-VLEQKIFVYNFADLKLLHQI  210 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-----~~~l~v-~~~~~I~iwd~~~~~~i~~~  210 (298)
                      ..+..||+.+..-+...+...-|.++.+.     +..+++ ..+..|.-||....+...+.
T Consensus        73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            77999999988766555555667676652     233443 34467888887776666554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.48  E-value=13  Score=32.18  Aligned_cols=188  Identities=14%  Similarity=0.118  Sum_probs=89.7

Q ss_pred             CeEEEEEcCCCC-EEEEEcCCeE-EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHG-CFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~-~lasgs~~gi-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .+.+++|+||.. ++|+..+.+. .-++. .++.+.+..+...++...+++.-++ .++++..      .++.+.++++.
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~E------r~~~L~~~~~~   94 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEE------RDQRLYIFTID   94 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEET------TTTEEEEEEE-
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEc------CCCcEEEEEEe
Confidence            599999999866 5555555553 33443 2455555555323556667765444 4555542      35888888873


Q ss_pred             CC--c----EEEEee--cC----CceEEEEEeC--CeEEEEEC-CeEEEEEcCC---CeEEEEE--ecc------CCCcc
Q 022387          165 QS--R----CIGELS--FR----SEVRSVKLRR--DRIIVVLE-QKIFVYNFAD---LKLLHQI--ETI------ANPKG  218 (298)
Q Consensus       165 ~~--~----~~~~~~--~~----~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~---~~~i~~~--~~~------~~~~~  218 (298)
                      ..  .    ....+.  +.    ..+-.+++++  +.++++.+ .-.++|.+..   ...+...  ...      .....
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            31  1    112222  22    2356677765  56666654 3444555432   1111111  111      11234


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--eecc--c-----ccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMA--H-----DSRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~--H-----~~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      .+++.+.. +.+++. ......|...|.+.+...  .+..  |     -...-.|+|.++|++.+++ +.+. ..+|
T Consensus       175 ~l~~~p~t-~~lliL-S~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNl-fy~f  247 (248)
T PF06977_consen  175 GLSYDPRT-GHLLIL-SDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNL-FYRF  247 (248)
T ss_dssp             EEEEETTT-TEEEEE-ETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTE-EEEE
T ss_pred             ceEEcCCC-CeEEEE-ECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCce-EEEe
Confidence            55665543 345554 566677777786665433  3332  1     1347899999999877765 5543 5444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=89.34  E-value=27  Score=36.81  Aligned_cols=131  Identities=17%  Similarity=0.215  Sum_probs=78.9

Q ss_pred             CCCeEEEEeCCC-----Cc-----EEEEe---ecCCceEEEEEeCCeEEEEECCeEEEEEc-CCCeEEEEEeccCCCcce
Q 022387          154 PLNKVMIWDDHQ-----SR-----CIGEL---SFRSEVRSVKLRRDRIIVVLEQKIFVYNF-ADLKLLHQIETIANPKGL  219 (298)
Q Consensus       154 ~d~~v~iWD~~~-----~~-----~~~~~---~~~~~v~~v~~~~~~l~v~~~~~I~iwd~-~~~~~i~~~~~~~~~~~~  219 (298)
                      .-|.+.|+|+-.     ++     .+.++   +..++|..++--..+++++...+|.+|++ ++..++-. .--.-+..+
T Consensus      1063 ~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv 1141 (1366)
T KOG1896|consen 1063 ARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYV 1141 (1366)
T ss_pred             CcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceee-EEeccceeE
Confidence            348899999632     22     12222   23467888887788888888999999999 54444321 111112223


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeeccc--ccceeEEEECCCC--CEEEEEeCCCCEEEEEECC
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAH--DSRIACFALTQDG--QLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H--~~~V~~l~fspdg--~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..+..-. +.+|+  |..-..|.+..++.+  ++..+..-  .-.|.++.|--||  -+|+.+..|++ |+++-+.
T Consensus      1142 ~s~~~vk-nlIl~--gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y~ 1213 (1366)
T KOG1896|consen 1142 HSMKVVK-NLILA--GDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMYA 1213 (1366)
T ss_pred             Eehhhhh-hheeh--hhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEeC
Confidence            3322221 23443  777777777444443  33333322  2358888887666  47888899999 9998755

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.25  E-value=27  Score=35.50  Aligned_cols=142  Identities=11%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceE----------------E-EEEeCCeEEEEE-----------CCeEEEEEcCCCe
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVR----------------S-VKLRRDRIIVVL-----------EQKIFVYNFADLK  205 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~----------------~-v~~~~~~l~v~~-----------~~~I~iwd~~~~~  205 (298)
                      .|+.+.-.|.++|+....+.....|.                + -....+.+++..           ++.|+-+|..+++
T Consensus       268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            56888888998888776554322220                0 112234555542           3689999999999


Q ss_pred             EEEEEeccC-C---C--c---------ce-EEEEeCCCCeEEEE-ecC----------------CCceEEEEEcCCcceE
Q 022387          206 LLHQIETIA-N---P--K---------GL-CAVSQGVGSLVLVC-PGL----------------QKGQVRVEHYASKRTK  252 (298)
Q Consensus       206 ~i~~~~~~~-~---~--~---------~~-~~~s~~~d~~~la~-sGs----------------~dg~v~i~~~~~~~~~  252 (298)
                      ++.++.... .   +  .         .. ..++.|++..++.+ +|.                ..+.|.-.|.++.+++
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            998886421 0   0  0         00 12233333222222 111                1122222444444433


Q ss_pred             -eecc--cc-------cceeEEEECC-CCC---EEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          253 -FIMA--HD-------SRIACFALTQ-DGQ---LLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       253 -~~~~--H~-------~~V~~l~fsp-dg~---~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                       .++.  |+       ....-+.+.. +|+   .++.+..+|. +.++|-++|+.+..
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~  484 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVP  484 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEee
Confidence             3322  21       1122223333 664   8999999999 99999999998864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=88.67  E-value=15  Score=31.81  Aligned_cols=157  Identities=9%  Similarity=0.098  Sum_probs=80.4

Q ss_pred             CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEEeCC-eEEEEE--CCeEEEEEcC
Q 022387          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRD-RIIVVL--EQKIFVYNFA  202 (298)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~-~l~v~~--~~~I~iwd~~  202 (298)
                      ..+..+++.++.+.++.+.+.      ++.|...+. +|+.++.+.+.+  ..-.|++-.+ .+++..  .+.+.++++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~------~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDE------PGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETT------TTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCccccEEcCCCCeEEEEECC------CCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            357888998888877777743      477777776 478888877653  5666776554 444444  3688888883


Q ss_pred             CC------eEEEEEec--c-CCC--cceEEEEeCCCCeEEEEecCCCceEEEEEcCC--c--ceE--e------eccccc
Q 022387          203 DL------KLLHQIET--I-ANP--KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K--RTK--F------IMAHDS  259 (298)
Q Consensus       203 ~~------~~i~~~~~--~-~~~--~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~--~~~--~------~~~H~~  259 (298)
                      ..      ....++..  . ..-  ...+++.+.. +.++++  -...-..++.+..  .  .+.  .      ...+..
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~--kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVA--KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEE--EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEE--eCCCChhhEEEccccCccceeeccccccccccceec
Confidence            21      11223331  1 111  2344544433 234442  3444445544432  1  111  1      122445


Q ss_pred             ceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          260 RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       260 ~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      .+..++|+|. |.+++-+..... |-++| .+|+.+..
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~  207 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSS  207 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEE
Confidence            6899999986 567777666666 88889 77776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.94  E-value=12  Score=37.60  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             cccceeEEEECCC---CCEEEEEeCCCCEEEEEECCCCc
Q 022387          257 HDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       257 H~~~V~~l~fspd---g~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +...|..+.|+|.   +..|+.-..|++ +|+||+...+
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~-lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNT-LRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCE-EEEEecCCCC
Confidence            3457999999987   478888888999 9999997643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=87.48  E-value=24  Score=32.63  Aligned_cols=139  Identities=15%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEE----CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      .++.|.+.|..+...+...........+.+.+  ..+.++.    ++++.+.|-.+.+.+.+......| .-+++.++  
T Consensus        94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~--  170 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD--  170 (381)
T ss_pred             CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC--
Confidence            35889999988877777666554455556654  4555553    368888888888888887665555 44455554  


Q ss_pred             CeEEEEecCCCceEEEEEcCCcceEe-----ecccccceeEEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEEe
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~~~~-----~~~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIWd~~tg~~l~~  296 (298)
                      +..+.+.-..++.|.+.+.....+..     ...-......++++|+|.++-..-..   +. +.+.|..++.....
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~  246 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTAT  246 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEe
Confidence            45444335678899998866654442     12223456889999999855444333   57 88999988877643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.41  E-value=2  Score=39.16  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       238 dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .+.+.|+|++++....+......+....|||+|+++|-.. ++. |.+++..+++..
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~n-ly~~~~~~~~~~   76 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNN-LYLRDLATGQET   76 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTE-EEEESSTTSEEE
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCc-eEEEECCCCCeE
Confidence            4678889999987776665578899999999999999997 677 999998887443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.13  E-value=10  Score=35.50  Aligned_cols=41  Identities=7%  Similarity=-0.093  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEe
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRD  123 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~  123 (298)
                      ..+..+.+|..+|++++.|+...-| |.++|+.....+..++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            4455799999999999888865544 7799998876655554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.77  E-value=28  Score=32.75  Aligned_cols=194  Identities=13%  Similarity=0.077  Sum_probs=83.2

Q ss_pred             CCCEEEEEcC--CeEEEEEcCC--CceEEEEeee----cC-Cce---EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           96 DHGCFAAGTD--HGFRIYNCDP--FREIFRRDFE----RG-GGI---GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        96 dg~~lasgs~--~gi~vw~~~~--~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      +.++|+..+-  +.|.|+|+.+  .+....+.+.    +. .++   .-+.+.++++.++.+=|+.+. -..+.+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence            5668887774  3366777753  2322222221    01 111   122334556565554333221 14577888898


Q ss_pred             CCCcEEEEeecCC--c--eEEEEEeCC--eEEEE---------------------ECCeEEEEEcCCCeEEEEEeccCCC
Q 022387          164 HQSRCIGELSFRS--E--VRSVKLRRD--RIIVV---------------------LEQKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       164 ~~~~~~~~~~~~~--~--v~~v~~~~~--~l~v~---------------------~~~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                      ++-+.....+...  .  -+.+.+++.  .++..                     -.+++.+||+.+.+.++++.-....
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            8877776665432  2  223334442  22221                     0248999999999999999875432


Q ss_pred             --cceEEEEeCCCCeEEEEecCCCceEEE-EEcCCc-----ceEeecc-----------------cccceeEEEECCCCC
Q 022387          217 --KGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASK-----RTKFIMA-----------------HDSRIACFALTQDGQ  271 (298)
Q Consensus       217 --~~~~~~s~~~d~~~la~sGs~dg~v~i-~~~~~~-----~~~~~~~-----------------H~~~V~~l~fspdg~  271 (298)
                        ...+.|..+++...=.+.+.-.++|.. +.....     ++..+..                 -..-|+.|.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence              234566667664332221222334444 332221     1222211                 123489999999988


Q ss_pred             EEEEEe-CCCCEEEEEECCCC
Q 022387          272 LLATSS-TKGTLVRIFNTLDG  291 (298)
Q Consensus       272 ~lAt~S-~Dgt~IrIWd~~tg  291 (298)
                      +|-.+. .+|. ||.||+..-
T Consensus       325 fLYvs~W~~Gd-vrqYDISDP  344 (461)
T PF05694_consen  325 FLYVSNWLHGD-VRQYDISDP  344 (461)
T ss_dssp             EEEEEETTTTE-EEEEE-SST
T ss_pred             EEEEEcccCCc-EEEEecCCC
Confidence            776665 4887 999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.38  E-value=18  Score=32.10  Aligned_cols=110  Identities=10%  Similarity=0.050  Sum_probs=69.9

Q ss_pred             CCcEEEEeecCCceEEEEEeCC---eEEEEEC--CeEEEEEcCCCeEEEEEeccCC--CcceEEEEeCCCCeEEEEec--
Q 022387          165 QSRCIGELSFRSEVRSVKLRRD---RIIVVLE--QKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPG--  235 (298)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~---~l~v~~~--~~I~iwd~~~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sG--  235 (298)
                      .++++..+........+.+++-   -++.+-.  .-..++|..+.+.+.++.....  -.+--.|++++  .+|-++-  
T Consensus        57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG--~~LYATEnd  134 (366)
T COG3490          57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG--RLLYATEND  134 (366)
T ss_pred             CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC--cEEEeecCC
Confidence            3566666666666666777763   2222322  3566888877777666654322  22333555554  6555321  


Q ss_pred             --CCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEE
Q 022387          236 --LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       236 --s~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~  276 (298)
                        ...|.|-|||...+-  +-.+..|.-....|.+.+||++|+.+
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence              224788889987543  44788888888999999999999987

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.08  E-value=35  Score=33.25  Aligned_cols=112  Identities=19%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             ceEEEEEeCC-------eEEEEECCeEEEEEcC-----CCeEEEEEecc---CCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387          177 EVRSVKLRRD-------RIIVVLEQKIFVYNFA-----DLKLLHQIETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       177 ~v~~v~~~~~-------~l~v~~~~~I~iwd~~-----~~~~i~~~~~~---~~~~~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      .|..+.|.+-       .+++-..+.|.+|-+.     ..+.+.+-..+   .-|+..--.-++|...+|++-...|-.|
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV  137 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV  137 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence            5888888652       4555566899999883     33333332211   1222222223455556666533434333


Q ss_pred             EE-EEcCCcceEeecccccceeEEEECCCCCEEEEE-eCCCCEEEEEECC
Q 022387          242 RV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTL  289 (298)
Q Consensus       242 ~i-~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~  289 (298)
                      .. -..+..+++.=-.-.+-|.|-||.+||+.|+.+ +..=. -.|||-.
T Consensus       138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLH-SyiWd~~  186 (671)
T PF15390_consen  138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLH-SYIWDSA  186 (671)
T ss_pred             eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEE-EEEecCc
Confidence            33 222334444222345779999999999887776 32323 5788843

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.04  E-value=43  Score=34.17  Aligned_cols=156  Identities=16%  Similarity=0.142  Sum_probs=85.3

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCC----ceEEEEeeecCCce----------EEEEEecCCCEEEEEeC
Q 022387           84 PPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPF----REIFRRDFERGGGI----------GVVEMLFRCNILALVGG  147 (298)
Q Consensus        84 ~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  147 (298)
                      ...+...|+|+|. ...||+-..+| .-||++...    ...........+.+          .-+.|..+.+.++++. 
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-  222 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-  222 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-
Confidence            3457789999984 46789888877 569999211    11111110011111          2334545555555554 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcE---EEEeecCCceEEEEEeCC---eEEEEECCeEEEEEcCC----CeEEEEEeccCC--
Q 022387          148 GPDPQYPLNKVMIWDDHQSRC---IGELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD----LKLLHQIETIAN--  215 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~---~~~~~~~~~v~~v~~~~~---~l~v~~~~~I~iwd~~~----~~~i~~~~~~~~--  215 (298)
                             ...+.++|+++...   +...+....|..+.-++.   ++++.+...|...++..    .+.+-..+....  
T Consensus       223 -------r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~  295 (765)
T PF10214_consen  223 -------RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPE  295 (765)
T ss_pred             -------CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCCC
Confidence                   46688888887644   222223346777766554   88899999999999865    233333333222  


Q ss_pred             -CcceEEEEeC-CCCeEEEEecCCCceEEEEEcC
Q 022387          216 -PKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYA  247 (298)
Q Consensus       216 -~~~~~~~s~~-~d~~~la~sGs~dg~v~i~~~~  247 (298)
                       +-.-+.+... .+..++++....+..|.+|.+.
T Consensus       296 D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f~  329 (765)
T PF10214_consen  296 DPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFFS  329 (765)
T ss_pred             CCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEEe
Confidence             2222233222 3333333334556667777663

These proteins are found in fungi.

>PHA02790 Kelch-like protein; Provisional

Probab=85.56  E-value=35  Score=32.65  Aligned_cols=139  Identities=17%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             CEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEEeCCeEEEEEC-----CeEEEEEcCCCeEEEEEec
Q 022387          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVLE-----QKIFVYNFADLKLLHQIET  212 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~l~v~~~-----~~I~iwd~~~~~~i~~~~~  212 (298)
                      +.+.++||.+    ....+..||..+++....-....  .-.++....+.+.+.+.     ..+..||..+.+= .....
T Consensus       319 ~~iYviGG~~----~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~  393 (480)
T PHA02790        319 NKLYVVGGLP----NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW-QFGPS  393 (480)
T ss_pred             CEEEEECCcC----CCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE-EeCCC
Confidence            4455555432    22568889987765432212221  12233334455555432     3577788754431 11111


Q ss_pred             cCCCc-ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE---eecccccceeEEEECCCCCEEEEEeCC-----CCEE
Q 022387          213 IANPK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTK-----GTLV  283 (298)
Q Consensus       213 ~~~~~-~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~~~H~~~V~~l~fspdg~~lAt~S~D-----gt~I  283 (298)
                      -..+. ...+...+  +.+.++ |   |.+.+++.++..=.   .+.........+.  -+|+..+.||.+     .+ |
T Consensus       394 m~~~r~~~~~~~~~--~~IYv~-G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~-v  464 (480)
T PHA02790        394 TYYPHYKSCALVFG--RRLFLV-G---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDT-I  464 (480)
T ss_pred             CCCccccceEEEEC--CEEEEE-C---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccce-E
Confidence            11111 12233333  366664 5   34667777654311   1211111222222  378899999865     34 7


Q ss_pred             EEEECCCCc
Q 022387          284 RIFNTLDGT  292 (298)
Q Consensus       284 rIWd~~tg~  292 (298)
                      .+||..+++
T Consensus       465 e~Yd~~~~~  473 (480)
T PHA02790        465 EVYNNRTYS  473 (480)
T ss_pred             EEEECCCCe
Confidence            888887654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.26  E-value=51  Score=34.37  Aligned_cols=123  Identities=13%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             CCeEEEEeCCC-Cc---EEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          155 LNKVMIWDDHQ-SR---CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       155 d~~v~iWD~~~-~~---~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      ++.+..+++.. +.   .+........|.+++--.++++++....+++||+.+.+++++.....-+..+..+....  ..
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~R  988 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--AR  988 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--eE
Confidence            45577777543 33   23333445578888777778888889999999998887776654433344445555544  55


Q ss_pred             EEEecCCCceEEE--EEcCCcceEeecccc--cceeEEEECCCCCEEEEEeCCCC
Q 022387          231 LVCPGLQKGQVRV--EHYASKRTKFIMAHD--SRIACFALTQDGQLLATSSTKGT  281 (298)
Q Consensus       231 la~sGs~dg~v~i--~~~~~~~~~~~~~H~--~~V~~l~fspdg~~lAt~S~Dgt  281 (298)
                      +++ |...-.|.+  |+...+.+..+..-.  ..|+++.+- |...+|.+..=|.
T Consensus       989 I~V-gD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN 1041 (1205)
T KOG1898|consen  989 IVV-GDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGN 1041 (1205)
T ss_pred             EEE-eeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCc
Confidence            665 444444444  777777766554332  336666553 3345666644444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=85.20  E-value=31  Score=31.88  Aligned_cols=68  Identities=15%  Similarity=-0.060  Sum_probs=28.8

Q ss_pred             EEcCCCCEEEEEcC-Ce-EEEE--EcCCCceEEEEeeecCCc-eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           92 SFNQDHGCFAAGTD-HG-FRIY--NCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        92 ~fs~dg~~lasgs~-~g-i~vw--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      +|.+||+.|+.+++ ++ -.+|  |+++++..-....  .+. .....++...+.++.+.       ..+.|+-.|+++.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--~g~~~~g~~~s~~~~~~~Yv~-------~~~~l~~vdL~T~  112 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--PGDNTFGGFLSPDDRALYYVK-------NGRSLRRVDLDTL  112 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--S-B-TTT-EE-TTSSEEEEEE-------TTTEEEEEETTT-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--CCCCccceEEecCCCeEEEEE-------CCCeEEEEECCcC
Confidence            57889987776665 55 3355  5555543221111  111 11123345555555554       2356777777766


Q ss_pred             cE
Q 022387          167 RC  168 (298)
Q Consensus       167 ~~  168 (298)
                      +.
T Consensus       113 e~  114 (386)
T PF14583_consen  113 EE  114 (386)
T ss_dssp             -E
T ss_pred             cE
Confidence            54

>PRK10115 protease 2; Provisional

Probab=85.15  E-value=45  Score=33.58  Aligned_cols=194  Identities=9%  Similarity=0.004  Sum_probs=97.4

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Ce-----EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           87 TLLHISFNQDHGCFAAGTD-HG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~g-----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+..+.++|||++||-+.+ +|     +++.++.++..+... +  .+....+.|..+++.++........ .....|..
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i--~~~~~~~~w~~D~~~~~y~~~~~~~-~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L--DNVEPSFVWANDSWTFYYVRKHPVT-LLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c--cCcceEEEEeeCCCEEEEEEecCCC-CCCCEEEE
Confidence            5778899999999998766 44     446677665422111 1  1222457788788777776542210 13467888


Q ss_pred             EeCCCCc--EEEEeecC-CceE-EEEE--eCCeEEEEE----CCeEEEEEc--CCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          161 WDDHQSR--CIGELSFR-SEVR-SVKL--RRDRIIVVL----EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       161 WD~~~~~--~~~~~~~~-~~v~-~v~~--~~~~l~v~~----~~~I~iwd~--~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      +++.+++  ...-+... .... .+..  ....+++..    ++.+.+|+.  .+.+....+. +..... ..+....+ 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-  280 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHE-YSLDHYQH-  280 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCE-EEEEeCCC-
Confidence            9998873  22222221 2222 2222  233444432    257888884  2333222222 222121 22222223 


Q ss_pred             eEEEEecC--CCceEEEEEcC-CcceEeeccc-c-cceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          229 LVLVCPGL--QKGQVRVEHYA-SKRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       229 ~~la~sGs--~dg~v~i~~~~-~~~~~~~~~H-~-~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .+++.+-.  .+..|...++. ......+..+ . ..|..+.+.. ..++++...+|. -+|+-+.
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~-~~l~~~~  344 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGL-TSLRQIN  344 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCE-EEEEEEc
Confidence            34433322  22233334443 2233445555 3 3688888873 356666666765 6665544

>PHA02713 hypothetical protein; Provisional

Probab=84.80  E-value=14  Score=36.18  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCe------EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC-C---------------
Q 022387           95 QDHGCFAAGTDHG------FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-Q---------------  152 (298)
Q Consensus        95 ~dg~~lasgs~~g------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------  152 (298)
                      -+|++.+.|+.++      +..||..+..+.....+. ...........++ .+.+.||.+.. .               
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp-~~r~~~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP-IALSSYGMCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC-cccccccEEEECC-EEEEEeCCCccccccccccccccccccc
Confidence            3677777777532      557887776654333321 1111111112234 44444443210 0               


Q ss_pred             -CCCCeEEEEeCCCCcEEEE--eecCCceEEEEEeCCeEEEEEC--------CeEEEEEcCC---CeEEEEEeccCCCcc
Q 022387          153 -YPLNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFAD---LKLLHQIETIANPKG  218 (298)
Q Consensus       153 -~~d~~v~iWD~~~~~~~~~--~~~~~~v~~v~~~~~~l~v~~~--------~~I~iwd~~~---~~~i~~~~~~~~~~~  218 (298)
                       ..-+++..||.++.+....  +.....-.+++...+.+.+.+.        ..+..||..+   .+.+..+.......+
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence             0124688899888754322  2121112233444455555432        2467888865   333333333222222


Q ss_pred             eEEEEeCCCCeEEEEecCCCc--eEEEEEcCCcc
Q 022387          219 LCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKR  250 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~  250 (298)
                      ...+    ++.+.++ |+.+|  .+..+|..+.+
T Consensus       508 ~~~~----~~~iyv~-Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        508 TILH----DNTIMML-HCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eEEE----CCEEEEE-eeecceeehhhcCccccc
Confidence            2222    2366665 77777  44446666543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.38  E-value=4.8  Score=28.99  Aligned_cols=42  Identities=17%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             cCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~  276 (298)
                      +..+|.+.-||..+++..++..--...+.|++++|+.+|+.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence            566889999999999887666555678999999999977666

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.53  E-value=4.4  Score=23.88  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             CCCCEEEEE-eCCCCEEEEEECCCCcEEEec
Q 022387          268 QDGQLLATS-STKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       268 pdg~~lAt~-S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |++++|..+ -.+++ |.++|..+++.+.++
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEE
Confidence            567655554 44666 999999999887664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.39  E-value=10  Score=32.12  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--------eec-------ccccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--------FIM-------AHDSRIACFALTQDGQLLATSSTKGTLVR  284 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--------~~~-------~H~~~V~~l~fspdg~~lAt~S~Dgt~Ir  284 (298)
                      +.+...+ ..++|  -+.+|.+++||+...+..        .+.       .....|..+.++.+|.-|++-+ +|. ..
T Consensus        16 ~~l~~~~-~~Ll~--iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~-~y   90 (219)
T PF07569_consen   16 SFLECNG-SYLLA--ITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD-SY   90 (219)
T ss_pred             EEEEeCC-CEEEE--EeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC-EE
Confidence            3344443 23454  488999999999875422        122       3556799999999999999987 677 89


Q ss_pred             EEECCCC
Q 022387          285 IFNTLDG  291 (298)
Q Consensus       285 IWd~~tg  291 (298)
                      .|+..-+
T Consensus        91 ~y~~~L~   97 (219)
T PF07569_consen   91 SYSPDLG   97 (219)
T ss_pred             Eeccccc
Confidence            9986643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.90  E-value=5.1  Score=23.39  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             ccccceeEEEECCCCCEEEEEeCC---CCEEEEE
Q 022387          256 AHDSRIACFALTQDGQLLATSSTK---GTLVRIF  286 (298)
Q Consensus       256 ~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIW  286 (298)
                      .....-...+|||||++|+=++.-   |. -.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            344567888999999888877653   55 6665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=82.73  E-value=33  Score=34.43  Aligned_cols=103  Identities=18%  Similarity=0.234  Sum_probs=61.6

Q ss_pred             CCeEEEEECCeEEEEEcCCCeEE------EEEec----------------cCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387          185 RDRIIVVLEQKIFVYNFADLKLL------HQIET----------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (298)
Q Consensus       185 ~~~l~v~~~~~I~iwd~~~~~~i------~~~~~----------------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~  242 (298)
                      .+.++++..+.|.||++......      ..+..                ..+.+.-+.+..=++..+|++ +.+||.|.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~-c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLL-CTDDGDVL  127 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEE-EecCCeEE
Confidence            77788888888999987432211      11110                001122233333333455554 89999999


Q ss_pred             EEEcCC------------c---------ceEeecccccceeEEEEC--CCCCEEEEEeCCCCEEEEEECCC
Q 022387          243 VEHYAS------------K---------RTKFIMAHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       243 i~~~~~------------~---------~~~~~~~H~~~V~~l~fs--pdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +|..+.            +         +...++ -...++.|+++  ...++||.++.-.. |.||-+..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l  196 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFAL  196 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce-EEEEEEec
Confidence            997531            0         011122 23478999998  77888888876666 99987664

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.38  E-value=9.1  Score=32.49  Aligned_cols=30  Identities=7%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             EecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387          135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (298)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~  171 (298)
                      +...++.+..++       .+|.+++||+.+++++..
T Consensus        18 l~~~~~~Ll~iT-------~~G~l~vWnl~~~k~~~~   47 (219)
T PF07569_consen   18 LECNGSYLLAIT-------SSGLLYVWNLKKGKAVLP   47 (219)
T ss_pred             EEeCCCEEEEEe-------CCCeEEEEECCCCeeccC
Confidence            334556666666       579999999999876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.24  E-value=17  Score=36.70  Aligned_cols=73  Identities=18%  Similarity=0.117  Sum_probs=46.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCC----------C-ceEEEEee--e-------cCCceEEEEEecC---CCEEE
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDP----------F-REIFRRDF--E-------RGGGIGVVEMLFR---CNILA  143 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~----------~-~~~~~~~~--~-------~~~~~~~~~~~~~---~~~~~  143 (298)
                      .|..|.+|++|++||..+..|+.|-.+-.          + ..+..+.+  .       ....+..+.|.+.   ...++
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            79999999999999999898876654421          1 11111211  1       1223445556554   24455


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCC
Q 022387          144 LVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus       144 ~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      +..       .|+++|+||+...
T Consensus       166 vLt-------sdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLT-------SDNTLRLYDISDP  181 (717)
T ss_pred             EEe-------cCCEEEEEecCCC
Confidence            555       6899999998753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>smart00564 PQQ beta-propeller repeat

Probab=82.00  E-value=3.7  Score=22.86  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          272 LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       272 ~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+..++.+|. +..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~-l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGT-LYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence            4666777898 999999999998876

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=81.27  E-value=5.8  Score=24.30  Aligned_cols=29  Identities=14%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             CeEEEEEcCC-C--CEEEEEcCCe-EEEEEcCC
Q 022387           87 TLLHISFNQD-H--GCFAAGTDHG-FRIYNCDP  115 (298)
Q Consensus        87 ~V~~v~fs~d-g--~~lasgs~~g-i~vw~~~~  115 (298)
                      .|+++.|||+ +  ++||..-+.+ +-|+|+.+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            6899999974 4  5888776655 66999874

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=80.87  E-value=62  Score=32.11  Aligned_cols=107  Identities=12%  Similarity=0.120  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..-+.-|.-++.-++.++ ..+.|||......++...+...+.+..++|.+  ++..+..+|       -.+.|.++--.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-------f~~~v~l~~Q~  104 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-------FPHHVLLYTQL  104 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-------cCcEEEEEEcc
Confidence            334444554554444444 44789999988877777764467778888754  445555555       46778887531


Q ss_pred             -----C----CcEEEEeec----CCceEEEEEeCCeEE-EEECCeEEEEEc
Q 022387          165 -----Q----SRCIGELSF----RSEVRSVKLRRDRII-VVLEQKIFVYNF  201 (298)
Q Consensus       165 -----~----~~~~~~~~~----~~~v~~v~~~~~~l~-v~~~~~I~iwd~  201 (298)
                           .    -..+.++..    ..+|....|.+++.+ ++.++.+.|+|-
T Consensus       105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence                 1    123444432    246778888776555 456789999975

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		5e-15
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-13

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 20/210 (9%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P + I  ++    G I    ML R N +A V    +  
Sbjct: 22  FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           +      IWDD + + I  +   + V+ + L R+ I+V     I ++ F +    ++I  
Sbjct: 79  H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
                G+C  + G   L++       GQ+ V    +   +       + AH + +    L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            + G ++AT S  GTL+R+F T +G L++E
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVRE 217

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 31/221 (14%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P   I  ++      +  V ML R N +A V G  +  
Sbjct: 27  FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
                V IWDD + + +  +   + V+ + L R+ I+V     I V+ F +     +I  
Sbjct: 83  -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
                G+C  S G   L++       GQ+ +    S                  +   I 
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           AH + I    L +   ++AT S  GT++R+F T DG L++E
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	2e-68
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-12

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score =  215 bits (549), Expect = 2e-68
 Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 36/251 (14%)

Query: 63  PESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR 122
           P  +   + P+      ++      +    FNQD  C    T   F IYN  P   I  +
Sbjct: 2   PLGSMITRNPIVPENHVSNP-----VTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQ 56

Query: 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVK 182
           +      +  V ML R N +A V G          V IWDD + + +  +   + V+ + 
Sbjct: 57  EM---RHLSKVRMLHRTNYVAFVTGVK------EVVHIWDDVKKQDVSRIKVDAPVKDLF 107

Query: 183 LRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242
           L R+ I+V     I V+ F +     +I       G+C  S     L++       GQ+ 
Sbjct: 108 LSREFIVVSYGDVISVFKFGN--PWKRITDDIRFGGVCEFSN---GLLVYSNEFNLGQIH 162

Query: 243 VEHYAS-----------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285
           +    S                  +   I AH + I    L +   ++AT S  GT++R+
Sbjct: 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222

Query: 286 FNTLDGTLLQE 296
           F T DG L++E
Sbjct: 223 FKTEDGVLVRE 233

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 65.5 bits (159), Expect = 3e-12
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 8/143 (5%)

Query: 160 IWDDHQSRCIGELSFRSEVRSVKLR-----RDRIIVVLEQKIFVYNFADLKLLHQIETIA 214
           + D      I   + R+      +         +++    +I + +    K+L +IE  +
Sbjct: 65  LKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124

Query: 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQL 272
             + +        +         +G +  + Y       + +   D   +   L +D  L
Sbjct: 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184

Query: 273 LATSSTKGTLVRIFNTLDGTLLQ 295
           LA  S  G  + ++N        
Sbjct: 185 LALYSPDGI-LDVYNLSSPDQAS 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.92
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.87
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.86
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.83
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.75
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.75
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.73
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.71
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.71
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.66
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.6
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.6
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.59
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.59
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.58
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.58
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.57
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.57
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.56
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.55
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.53
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.51
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.48
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.47
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.45
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.44
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.41
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.39
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.38
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.31
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.28
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.28
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.28
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.28
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.27
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.26
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.23
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.19
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.18
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.18
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.11
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.09
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.08
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.05
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.03
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.02
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.01
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.01
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.01
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.99
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.99
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.96
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.93
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.92
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.83
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.82
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.7
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.61
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.58
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.51
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.47
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.36
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.26
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.17
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.15
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.06
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.66
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.65
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.64
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.53
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.48
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.32
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.26
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.26
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.23
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.16
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.15
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.02
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.91
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.88
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.83
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.46
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.36
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.22
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.1
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.86
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.6
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.07
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.74
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.4
3ott_A	758	Two-component system sensor histidine kinase; beta	93.92
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	93.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	93.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.66
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.5
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.58
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.35
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.14
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.98
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.86
3ott_A	758	Two-component system sensor histidine kinase; beta	90.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	90.53
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.02
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.92
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.79
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.17
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.63
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	85.19
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	85.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.85
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.72
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	84.52
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	82.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	80.19

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=2.3e-30  Score=234.54  Aligned_cols=200  Identities=30%  Similarity=0.486  Sum_probs=171.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..|...|++++|+|||++||+|++++++||++++.+......+   +++..+.+.++++.+++++++      |++|+||
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------d~~v~iW   86 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGV------KEVVHIW   86 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSS------TTEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECC------ccEEEEE
Confidence            4577899999999999999999999999999998877666553   468888899999988887754      5899999


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEEe-cCCCc
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQKG  239 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~s-Gs~dg  239 (298)
                      |..+++.+.++.+...|.++.++++.++++.++.|++||+.+. +.++++..   +...+++++    .++|++ |+.+|
T Consensus        87 d~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~~~g  159 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEFNLG  159 (355)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESSCTT
T ss_pred             ECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCCcCc
Confidence            9999999999999999999999999999999999999999887 77766665   556777776    455555 89999


Q ss_pred             eEEEEEcCCcc-----------------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          240 QVRVEHYASKR-----------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       240 ~v~i~~~~~~~-----------------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .|++||+....                 +..+.+|...|++|+|+|+|++|||||.|+++|||||++++++++++
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            99999998754                 67889999999999999999999999999965999999999998775

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=3.9e-30  Score=232.62  Aligned_cols=201  Identities=8%  Similarity=-0.010  Sum_probs=163.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|++|+|+|||++||+|+.++ |+|||+.+.+.+..... |.+.+..+.+.+++. .++.++       .|++|+
T Consensus       124 ~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s-------~D~~v~  195 (344)
T 4gqb_B          124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDSVFLSCS-------EDNRIL  195 (344)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTTEEEEEE-------TTSCEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCCceeeec-------cccccc
Confidence            46888999999999999999999866 89999999887666554 678888888887764 556665       689999


Q ss_pred             EEeCCCCcEEEEeecC---CceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          160 IWDDHQSRCIGELSFR---SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~---~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      |||+++++.+..+...   ..+.++.|+++   .++++. ++.|++||++++++++++..|...+..++|++++. .+||
T Consensus       196 iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~-~~la  274 (344)
T 4gqb_B          196 LWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV-PFLA  274 (344)
T ss_dssp             EEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS-CCEE
T ss_pred             cccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC-eEEE
Confidence            9999999888776533   36888999863   344444 58999999999999999999988887777776542 4565


Q ss_pred             EecCCCceEEEEEcCCcceEeecccccceeEEEECCCCC-EEEEEeCCCCEEEEEECCCCcE
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                       +|+.||.|+|||...+++..+.+|.+.|++|+|+|+++ +|||||.|++ |++|++.+..+
T Consensus       275 -sgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~-v~~w~v~~~~~  334 (344)
T 4gqb_B          275 -SLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ-VVHHVVPTEPL  334 (344)
T ss_dssp             -EEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECCC---
T ss_pred             -EEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe-EEEEECCCCCC
Confidence             59999999999999988888999999999999999985 6889999999 99999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.8e-29  Score=223.47  Aligned_cols=206  Identities=10%  Similarity=0.082  Sum_probs=171.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|..+|.+++|+|++++|++|+.++ ++|||+.+.+.+..... |...+..+.+.+++..+++++       .|++|++
T Consensus        52 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs-------~D~~v~l  123 (304)
T 2ynn_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS-------DDLTVKL  123 (304)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE-------TTSCEEE
T ss_pred             eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEEC-------CCCeEEE
Confidence            35667899999999999999999865 88999999887666654 678899999999998888877       7899999


Q ss_pred             EeCCCCc-EEEEeec-CCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEE
Q 022387          161 WDDHQSR-CIGELSF-RSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~~-~~~~~~~-~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ||++++. ....+.. ...|.++.|++.   .++++. +++|++||+++.+....+.. +...+..+++++.+++.+|+ 
T Consensus       124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-  202 (304)
T 2ynn_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-  202 (304)
T ss_dssp             EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE-
T ss_pred             EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE-
Confidence            9999874 4445554 458999999872   455554 58999999988776666654 44566777888877778888 


Q ss_pred             ecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|+.||.|++||+.... +.++.+|...|++++|+|++++|||||.||+ |||||++++++++++
T Consensus       203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             EEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeec
Confidence            59999999999998765 4589999999999999999999999999999 999999999988775

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=227.88  Aligned_cols=203  Identities=14%  Similarity=0.172  Sum_probs=158.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEee---ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .++..|.+++|+||+. |++|+. +.|+|||+++.+......+   .|.+.+..+.+++++..+++++       .|++|
T Consensus        80 ~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-------~d~~i  151 (344)
T 4gqb_B           80 QTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-------KDICI  151 (344)
T ss_dssp             EESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCE
T ss_pred             ccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------CCCeE
Confidence            3456899999999975 566666 4589999998775443322   2678899999999999988887       78999


Q ss_pred             EEEeCCCCcEEEEeecC-CceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC-CeEEE
Q 022387          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLV  232 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d-~~~la  232 (298)
                      ++||+++++++..+..+ ..|.++.|+++   .++.+. +++|++||+++++.+.++..+.......++.+.++ +.++|
T Consensus       152 ~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence            99999999999888754 58999999864   344444 58999999999998888765443333444444443 35666


Q ss_pred             EecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                       +|+.||.|++||+.... +.++.+|...|++|+|+|+| ++|||||.|++ |||||++++++++
T Consensus       232 -sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~  294 (344)
T 4gqb_B          232 -FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR  294 (344)
T ss_dssp             -EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE
T ss_pred             -EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE
Confidence             59999999999997654 56899999999999999998 68999999999 9999999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.4e-28  Score=221.18  Aligned_cols=205  Identities=13%  Similarity=0.147  Sum_probs=170.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|...|++++|+|||++|++|+.|+ ++|||+.+.+....... |...+..+.+.+++..+++++       .|+.|+
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~-------~d~~v~  122 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG-------LDNICS  122 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE-------TTCEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe-------CCCeEE
Confidence            467888999999999999999999865 88999998887766655 677888899999999888887       689999


Q ss_pred             EEeCCCCc----EEEEeec-CCceEEEEEeCCe-EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          160 IWDDHQSR----CIGELSF-RSEVRSVKLRRDR-IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       160 iWD~~~~~----~~~~~~~-~~~v~~v~~~~~~-l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      +||+.++.    ....+.. ...|.++.|+++. ++++. +++|++||+.+++.+.++..|...+..+++++  ++.+++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~  200 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP--DTRLFV  200 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC--CCCEEE
Confidence            99998753    3344443 4578889887654 44343 58999999999999999998887766666655  457777


Q ss_pred             EecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       +|+.||.|++||+.... ..++.+|...|++|+|+|+|++||+||.||+ |+|||+++++.+.++
T Consensus       201 -sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~  264 (340)
T 1got_B          201 -SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTY  264 (340)
T ss_dssp             -EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEE
T ss_pred             -EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEE
Confidence             59999999999998765 4589999999999999999999999999999 999999999887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=220.05  Aligned_cols=204  Identities=17%  Similarity=0.166  Sum_probs=173.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|++++.++++|+.|+ ++|||+.+.+.+..... +...+..+.+.+++..+++++       .+++|++
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~g~-------~dg~v~i  148 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYLATGT-------HVGKVNI  148 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTTCCCCEEECTTSSEEEEEC-------TTSEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC-CCccEEEEEECCCCCEEEEEc-------CCCcEEE
Confidence            46778999999999999999999755 88999999887665553 455667788888888888877       6799999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||+++++....+..+ ..|.+++|+++  .++++. ++.|++||+++++++.++..|..++..++|+++  +.+|+ +|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~-s~s  225 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD--SQLLV-TAS  225 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTT--SCEEE-EEC
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCC--CCEEE-EEc
Confidence            999999888777655 47899999875  455544 589999999999999999998888877777765  47887 599


Q ss_pred             CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .||.|++|++.... ..++.+|...|++++|+|+|++||++|.|++ |+|||++++++++++
T Consensus       226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTF  286 (321)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEE
Confidence            99999999998665 4588999999999999999999999999999 999999999998876

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=1.4e-28  Score=217.82  Aligned_cols=205  Identities=11%  Similarity=0.128  Sum_probs=168.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|||++||+|+.++ ++|||+++...+..... |...+..+.+.++++.+++++       .|++|++
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s-------~d~~i~v   81 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGS-------DDFRIRV   81 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEE-------TTSEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEEEEEC-------CCCEEEE
Confidence            46778999999999999999999865 88999999877666554 577888999999999988888       7899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ||+.+++.+..+..+ ..|.+++|+++  .++++. +++|++||+++. .+...+..|...+.+++|++. ++.+|| +|
T Consensus        82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~-sg  159 (304)
T 2ynn_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFA-SG  159 (304)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT-CTTEEE-EE
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC-CCCEEE-EE
Confidence            999999998888755 57999999975  444444 589999999766 566677888887777777663 235666 59


Q ss_pred             CCCceEEEEEcCCcc-eE-eecccccceeEEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~-~~-~~~~H~~~V~~l~fsp--dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.||.|++||+.... .. ....|...|..++|+|  ++++||+||.|++ |||||+++++++.++
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATL  224 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceee
Confidence            999999999987543 23 3456778999999986  7889999999999 999999999988765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=1.3e-28  Score=227.13  Aligned_cols=205  Identities=13%  Similarity=0.185  Sum_probs=173.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|..+|++++|+|++.+|++|+.|+ |+|||+.+.+....... |.+.+..+.+.+++..+++++       .|++|+
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs-------~D~~i~  175 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS-------ADMTIK  175 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSCCC
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe-------CCCeEE
Confidence            357889999999999999999999865 88999998877655554 677889999998888888887       789999


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      |||+.+++++..+..+ ..|.++.|+++  .++++. +++|++||+++++++.++..|...+..+.+  ++++.+++ +|
T Consensus       176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~--~~~g~~l~-s~  252 (410)
T 1vyh_C          176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP--NQDGTLIA-SC  252 (410)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--CTTSSEEE-EE
T ss_pred             EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE--CCCCCEEE-EE
Confidence            9999999988887654 58999999875  455554 589999999999999999988776655555  45558888 59


Q ss_pred             CCCceEEEEEcCCcce-EeecccccceeEEEECCC--------------------CCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          236 LQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspd--------------------g~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      +.||.|++|++..... ..+.+|...|++++|+|+                    |.+||+|+.|++ |+|||+++++++
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~  331 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCL  331 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCceE
Confidence            9999999999987654 478999999999999997                    779999999999 999999999988


Q ss_pred             Eec
Q 022387          295 QEG  297 (298)
Q Consensus       295 ~~~  297 (298)
                      .++
T Consensus       332 ~~~  334 (410)
T 1vyh_C          332 MTL  334 (410)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=4.1e-29  Score=226.55  Aligned_cols=200  Identities=12%  Similarity=0.049  Sum_probs=163.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|++++|+|||++|++|+.++ |+|||+.+.+.+..... |...+..+.+.++.. .+++++       .|++|+
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~-------~dg~v~  207 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDTIFLSCG-------EDGRIL  207 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSSCEEEEE-------TTSCEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCceeeeec-------cCCceE
Confidence            46788999999999999999999865 89999999887666554 677888888887765 555655       679999


Q ss_pred             EEeCCCCcEEEEeec---CCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          160 IWDDHQSRCIGELSF---RSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       160 iWD~~~~~~~~~~~~---~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      +||+++++.+..+..   ...+.++.|+++   .++++. ++.|++||++++++++++..|...+..++|++++ ..+||
T Consensus       208 ~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~la  286 (357)
T 4g56_B          208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS-SPFLA  286 (357)
T ss_dssp             ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS-SCCEE
T ss_pred             EEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC-CCEEE
Confidence            999999887666543   346899999864   344444 5799999999999999999888887777777653 24566


Q ss_pred             EecCCCceEEEEEcCCcceEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                       +|+.||.|+|||.++.++....+|...|++|+||| |+++|||+|.||+ |+|||+.+..
T Consensus       287 -sgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~-v~iW~~~~~~  345 (357)
T 4g56_B          287 -SISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHK-VLHHHLPSEG  345 (357)
T ss_dssp             -EEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECC---
T ss_pred             -EEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCe-EEEEECCCCC
Confidence             59999999999999888777779999999999998 8999999999999 9999997643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=9.4e-29  Score=228.15  Aligned_cols=207  Identities=12%  Similarity=0.195  Sum_probs=175.0

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|...|++++|+|+|++||+|+.|+ ++|||+.+.+.+..... |.+.+..+.+.++++.+++++       .|++|+
T Consensus       146 l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~l~s~s-------~D~~i~  217 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSAS-------RDKTIK  217 (410)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEEECSSSSEEEEEE-------TTSEEE
T ss_pred             EeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEEeCCCCEEEEEe-------CCCeEE
Confidence            356888999999999999999999866 88999988776554443 677889999998888888877       789999


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC--------
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG--------  227 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d--------  227 (298)
                      +||++++.++..+..+ ..|.++.++++  .++++. +++|++||+.+.+...++..|...+.+++++++..        
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence            9999999998888755 47889999875  344444 58999999999999999999988888888877531        


Q ss_pred             ----------CeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          228 ----------SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       228 ----------~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                                +.+|+ +|+.||.|++||+.... +.++.+|...|++|+|+|+|++|++||.||+ |+|||+.+++++++
T Consensus       298 ~~~~~~~~~~g~~l~-sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~~  375 (410)
T 1vyh_C          298 GSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKT  375 (410)
T ss_dssp             SCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEE
T ss_pred             cccccccCCCCCEEE-EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEE
Confidence                      45677 59999999999998764 5588999999999999999999999999999 99999999988766


Q ss_pred             c
Q 022387          297 G  297 (298)
Q Consensus       297 ~  297 (298)
                      +
T Consensus       376 ~  376 (410)
T 1vyh_C          376 L  376 (410)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=3e-28  Score=217.72  Aligned_cols=206  Identities=15%  Similarity=0.204  Sum_probs=167.0

Q ss_pred             cCCCCCCeEEEEEcCC----CCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~d----g~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ...|...|.+|+|+++    +++|++|+.|+ ++||++...+......+. |...+..+.+..+...+++++       .
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s-------~  100 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS-------L  100 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE-------T
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe-------C
Confidence            3578899999999974    67999999855 899999877654444332 667788888888888888777       7


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      |++|++||+.+++.+..+..+ ..+.++.|+++  .++++. ++.|++||+.+++...++..+...+..+++++  ++.+
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP--DGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT--TSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC--CCCE
Confidence            899999999999988887754 47888999875  344443 48999999999998888888766665555554  5588


Q ss_pred             EEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      || +|+.||.|++||+.+.. +.++.+|..+|++|+|+|+|++||+|+.|++ |+|||+++++++.++
T Consensus       179 la-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          179 LA-SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTL  244 (321)
T ss_dssp             EE-EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEE
T ss_pred             EE-EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEE
Confidence            88 49999999999998765 4588999999999999999999999999999 999999999887664

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=8.1e-28  Score=217.68  Aligned_cols=207  Identities=10%  Similarity=0.082  Sum_probs=172.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|...|++++|+|||++||+|+.|+ ++|||..+.+....... |...+..+.+.+++..+++++       .|++++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~-------~d~~i~  131 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGG-------LDNKCS  131 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEES-------TTSEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEee-------CCCCEE
Confidence            357889999999999999999999866 88999988877666554 566788888999998888877       689999


Q ss_pred             EEeCCCC------cEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387          160 IWDDHQS------RCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       160 iWD~~~~------~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      +|++...      .....+. +...|.++.|+++  .++++. +++|++||+.+++++.++..|...+.++++++++++.
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            9998643      1223333 4457899999875  455554 5899999999999999999998888888888877777


Q ss_pred             EEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|+ +|+.||.|++||+.... +..+.+|...|++++|+|+|.+|||||.|++ |||||+++++.+..+
T Consensus       212 ~l~-sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          212 TFV-SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIY  278 (354)
T ss_dssp             EEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEE
T ss_pred             EEE-EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEE
Confidence            887 59999999999998765 4578999999999999999999999999999 999999998776543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.3e-28  Score=214.70  Aligned_cols=207  Identities=12%  Similarity=0.112  Sum_probs=166.7

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceE---EEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREI---FRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ...|...|++++|+|++ ++|++|+.|+ +++|++......   ....+. |.+.+..+.+.+++..+++++       .
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-------~   85 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS-------W   85 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe-------C
Confidence            35788999999999965 8999999865 889998643211   112221 678888899999999988888       7


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC----
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV----  226 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~----  226 (298)
                      |++|+|||+++++.+..+..+ ..|.++.|+++  .++++. +++|++||++ .+.+.++..|...+..+.+.+..    
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence            899999999999998888754 58999999875  344444 5899999996 45677888888877777776643    


Q ss_pred             CCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++.+++ +|+.||.|++|++..... ..+.+|...|++++|+|+|++||+|+.||+ |+|||+.++++++++
T Consensus       165 ~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          165 DSVTII-SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTL  234 (319)
T ss_dssp             -CCEEE-EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred             CccEEE-EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEe
Confidence            334666 599999999999987654 478899999999999999999999999999 999999999988764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2.1e-27  Score=209.97  Aligned_cols=204  Identities=14%  Similarity=0.219  Sum_probs=170.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|+|++||+|+.++ ++||+..+.+....... |...+..+.+.++++.+++++       .|+.|++
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------~d~~i~v   91 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSAS-------DDKTLKI   91 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEEC-------CCCEEEE
Confidence            57888999999999999999999865 88999988776555443 677888999999999888887       6899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||+++++++..+..+ ..|.++.|+++  .++++. ++.|++||+++++.+..+..|..++..+++++  ++.+++ +|+
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~-~~~  168 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR--DGSLIV-SSS  168 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEE-EEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC--CCCEEE-EEe
Confidence            999999998888754 57999999875  455444 58999999999999999988877776666655  457777 489


Q ss_pred             CCceEEEEEcCCcce-Ee-ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRT-KF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~-~~-~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .||.|++||...... .. ...|...|.+++|+|+|++|++++.|+. |+|||++++++++++
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTY  230 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEE
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEE
Confidence            999999999987653 33 3467788999999999999999999999 999999999988765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=4e-27  Score=215.85  Aligned_cols=199  Identities=16%  Similarity=0.187  Sum_probs=163.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      .|++++|+|||++||+|+.++ |+|||+++.+....... |...+..+.+.+++..+++++       .|++|++||+++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s-------~d~~v~iwd~~~  196 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGS-------GDRTVRIWDLRT  196 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEec-------CCCcEEEEECCC
Confidence            599999999999999999865 88999998877655543 677889999998998888877       689999999999


Q ss_pred             CcEEEEeecCCceEEEEEeC-C--eEEEEE-CCeEEEEEcCCCeEEEEEe-------ccCCCcceEEEEeCCCCeEEEEe
Q 022387          166 SRCIGELSFRSEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIE-------TIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       166 ~~~~~~~~~~~~v~~v~~~~-~--~l~v~~-~~~I~iwd~~~~~~i~~~~-------~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +++...+.+...+.++.+++ +  .++++. ++.|++||+++++.+..+.       .|...+..++|  ++++.+|+ +
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~g~~l~-s  273 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF--TRDGQSVV-S  273 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE--CTTSSEEE-E
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE--CCCCCEEE-E
Confidence            99988888888899999986 3  455544 5899999999988887773       45455555555  45568887 5


Q ss_pred             cCCCceEEEEEcCCc-------------ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          235 GLQKGQVRVEHYASK-------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~-------------~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+.||.|++|++...             ....+.+|...|.+++|+|++++||+||.|++ |+|||+++++++.++
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLML  348 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEE
Confidence            999999999998642             13467899999999999999999999999999 999999999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=3e-28  Score=220.88  Aligned_cols=207  Identities=14%  Similarity=0.166  Sum_probs=157.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEee---ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|++++|+||+.+|+++.++.|+|||+.+.+......+   .|...+..+.+++++..+++++       .|++|
T Consensus        91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-------~dg~v  163 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-------KDFSV  163 (357)
T ss_dssp             EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------TTSCE
T ss_pred             CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------CCCeE
Confidence            3566789999999999888777777799999987654322221   2577889999999999888887       68999


Q ss_pred             EEEeCCCCcEEEEeecC-CceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC-eEEE
Q 022387          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS-LVLV  232 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~-~~la  232 (298)
                      ++||+++++.+..+..+ ..|.++.|+++   .++++. +++|++||+++++++..+..+.....+.++.+++++ .+||
T Consensus       164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            99999999999888754 58999999763   344444 589999999988877666554443344444444443 4566


Q ss_pred             EecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       +|+.||.|++||+.... +.++.+|...|++|+|+|++ ++|||||.|++ |||||++++++++.+
T Consensus       244 -~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          244 -CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL  308 (357)
T ss_dssp             -EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC
T ss_pred             -EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC
Confidence             59999999999998754 56889999999999999997 68999999999 999999999987653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=3.9e-27  Score=208.18  Aligned_cols=208  Identities=11%  Similarity=0.188  Sum_probs=155.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce--EEEEeee-cCCceEEEEEec--CCCEEEEEeCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLF--RCNILALVGGGPDPQY  153 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~--~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  153 (298)
                      +...|...|++++|+|+|++||+|+.++ ++||++.+...  .....+. |...+..+.+.+  ++..+++++       
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~-------   78 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS-------   78 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE-------
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc-------
Confidence            3467888999999999999999999866 88999986532  1222221 677888888877  477888877       


Q ss_pred             CCCeEEEEeCCCC---------cEEEEee-cCCceEEEEEeCC----eEEEEE-CCeEEEEEcCCCeE------------
Q 022387          154 PLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLKL------------  206 (298)
Q Consensus       154 ~d~~v~iWD~~~~---------~~~~~~~-~~~~v~~v~~~~~----~l~v~~-~~~I~iwd~~~~~~------------  206 (298)
                      .|++|++||++++         +.+..+. +...|.++.|+++    .++++. ++.|++||+++.+.            
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence            6899999999886         3455554 3468999999865    455554 58999999865431            


Q ss_pred             ------------------------------------------------EEEEeccCCCcceEEEEeCCCC--eEEEEecC
Q 022387          207 ------------------------------------------------LHQIETIANPKGLCAVSQGVGS--LVLVCPGL  236 (298)
Q Consensus       207 ------------------------------------------------i~~~~~~~~~~~~~~~s~~~d~--~~la~sGs  236 (298)
                                                                      +..+..|...+..+++++++..  .+|+ +|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~-s~~  237 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA-TGC  237 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE-EEE
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE-EEc
Confidence                                                            2333345445545555443211  6777 599


Q ss_pred             CCceEEEEEcCC-----------------------------------------------cceEeecccccceeEEEECCC
Q 022387          237 QKGQVRVEHYAS-----------------------------------------------KRTKFIMAHDSRIACFALTQD  269 (298)
Q Consensus       237 ~dg~v~i~~~~~-----------------------------------------------~~~~~~~~H~~~V~~l~fspd  269 (298)
                      .||.|++|++..                                               ..+..+.+|...|++|+|+|+
T Consensus       238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~  317 (351)
T 3f3f_A          238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT  317 (351)
T ss_dssp             TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred             CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence            999999999875                                               234467899999999999999


Q ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          270 GQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      |++|||++.||+ |+|||+.+++.++.
T Consensus       318 ~~~l~s~~~dg~-v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          318 GTILSSAGDDGK-VRLWKATYSNEFKC  343 (351)
T ss_dssp             SCCEEEEETTSC-EEEEEECTTSCEEE
T ss_pred             CCEEEEecCCCc-EEEEecCcCcchhh
Confidence            999999999999 99999999866544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=8.2e-27  Score=211.08  Aligned_cols=196  Identities=15%  Similarity=0.240  Sum_probs=160.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecC--CCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|.+++|+|++.+|++|+.|+ +++||+++.+.+..... |...+.++.+.+.  ++.+++++       .|++|
T Consensus       151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs-------~Dg~v  222 (354)
T 2pbi_B          151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGG-------CDKKA  222 (354)
T ss_dssp             EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEE-------TTSCE
T ss_pred             eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEe-------CCCeE
Confidence            35778999999999999999998855 88999999887655553 5777888888764  45777766       68999


Q ss_pred             EEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      ++||+++++++..+..+ ..|.++.|+++  .++++. +++|++||++..+.+..+..+.....+.++.+++++.++++ 
T Consensus       223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-  301 (354)
T 2pbi_B          223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA-  301 (354)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE-
T ss_pred             EEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE-
Confidence            99999999998888754 58999999874  455555 58999999999888777765444344555566667788884 


Q ss_pred             cCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      |+.||.|++||.... .+..+.+|...|++|+|+|||++|||||.|++ |+||+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~-v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT-LRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE-EEEEC
T ss_pred             EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC-EEecC
Confidence            999999999998655 45688999999999999999999999999999 99996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=4.1e-27  Score=207.66  Aligned_cols=201  Identities=18%  Similarity=0.169  Sum_probs=154.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC--ceEEEEeeecCCceEEEEEecC--CCEEEEEeCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF--REIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d  155 (298)
                      ...|...|++++|+|||++||+|+.|+ ++||+++..  +.+..... |.+.+..+.+.+.  +..+++++       .|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s-------~D   76 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS-------YD   76 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEc-------CC
Confidence            356888999999999999999999865 899999753  33333332 6778888888653  67778777       78


Q ss_pred             CeEEEEeCCCCc--EEEEee-cCCceEEEEEeCC----eEEEEE-CCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeC
Q 022387          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       156 ~~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~  225 (298)
                      ++|+|||+++++  .+..+. +...|.++.|+++    .++++. ++.|++||+++..  ....+..|...+..++++++
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999999998874  344444 4468999999874    455554 5899999997653  23556777777777777664


Q ss_pred             C-----------CCeEEEEecCCCceEEEEEcCCcc-----eEeecccccceeEEEECCCC---CEEEEEeCCCCEEEEE
Q 022387          226 V-----------GSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIF  286 (298)
Q Consensus       226 ~-----------d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspdg---~~lAt~S~Dgt~IrIW  286 (298)
                      .           ++.+|| +|+.||.|++|++....     ..++.+|...|++|+|+|++   ++|||+|.|++ |+||
T Consensus       157 ~~~~~~~~~~~~~~~~l~-sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iW  234 (297)
T 2pm7_B          157 TIEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIW  234 (297)
T ss_dssp             C------------CCEEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEE
T ss_pred             cccccccCCCCCCcceEE-EEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEE
Confidence            2           235777 59999999999987543     34788999999999999995   89999999999 9999


Q ss_pred             ECCCC
Q 022387          287 NTLDG  291 (298)
Q Consensus       287 d~~tg  291 (298)
                      |++++
T Consensus       235 d~~~~  239 (297)
T 2pm7_B          235 TQDNE  239 (297)
T ss_dssp             EESST
T ss_pred             EeCCC
Confidence            99875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=8.2e-27  Score=209.56  Aligned_cols=195  Identities=14%  Similarity=0.194  Sum_probs=159.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.++.|++++. |++|+. +.+++||+.+.+....... |.+.+..+.+.+++..+++++       .|++|++
T Consensus       140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~-------~d~~v~~  210 (340)
T 1got_B          140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGA-------CDASAKL  210 (340)
T ss_dssp             ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEe-------CCCcEEE
Confidence            46778999999999887 555554 6699999999877655543 677888999988888888877       6899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||++++.++..+..+ ..|.+++|+++  .++++. +++|++||+++.+.+..+..+.....+.++++++++.+|++ |+
T Consensus       211 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~  289 (340)
T 1got_B          211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GY  289 (340)
T ss_dssp             EETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE-EE
T ss_pred             EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE-EC
Confidence            999999988888754 58999999875  455554 58999999999888877764433334556666677788884 99


Q ss_pred             CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .||.|++|+..... ...+.+|...|++|+|+|+|++|||||.|++ |+|||
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~-i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC-EEEEC
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc-EEecC
Confidence            99999999987654 5588999999999999999999999999999 99997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=4.9e-28  Score=220.92  Aligned_cols=207  Identities=14%  Similarity=0.162  Sum_probs=162.9

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....|...|++++|+|||++||+|+.|+ ++|||..+.+....... |...+..+.+.+++..+++++       .|+.|
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las~~-------~d~~v  132 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVACGG-------LDSAC  132 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEECC-------SSSCC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEEee-------CCCcE
Confidence            3467889999999999999999999866 88999999887666655 677788888888888887766       68999


Q ss_pred             EEEeCCCCc-------EEEEee-cCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEE-----eccCCCcceEE
Q 022387          159 MIWDDHQSR-------CIGELS-FRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQI-----ETIANPKGLCA  221 (298)
Q Consensus       159 ~iWD~~~~~-------~~~~~~-~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~-----~~~~~~~~~~~  221 (298)
                      ++||+.+..       ....+. +...|.++.|.++   .++++. +++|++||+.+++.+..+     ..|...+..++
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            999987532       122233 3346777888763   455554 589999999999988877     33444444444


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +++. ++.+++ +|+.||.|++||+..  ..+..+.+|...|++|+|+|+|++|||||.||+ |||||++++++++.|
T Consensus       213 ~~~~-~~~~l~-sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          213 INSL-NANMFI-SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVY  287 (380)
T ss_dssp             ECSS-SCCEEE-EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEE
T ss_pred             eecC-CCCEEE-EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEe
Confidence            4432 446676 599999999999863  446689999999999999999999999999999 999999999988765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=6.2e-27  Score=226.59  Aligned_cols=208  Identities=16%  Similarity=0.210  Sum_probs=164.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ...|...|++++|+|||++||+|+.++ ++|||+.+.+......+. |.+.+..+.+++++..++.++.+.+   ..++|
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~---~~~~v  131 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGHV  131 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEEE
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC---ceeEE
Confidence            356788999999999999999999865 889999765433222221 6788999999999998888875422   23578


Q ss_pred             EEEeCCCCcEEEEeecC-CceEEEEEeCCe---EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~---l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ++||.  ++.+..+..+ ..|.++.|+++.   ++++. +++|++||..+.+++.++..|...+..++|+++  +.+|| 
T Consensus       132 ~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd--g~~la-  206 (611)
T 1nr0_A          132 FLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD--GSLFA-  206 (611)
T ss_dssp             EETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT--SSEEE-
T ss_pred             EEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC--CCEEE-
Confidence            88874  4444455544 589999999862   55555 589999999999999999999887777777665  57888 


Q ss_pred             ecCCCceEEEEEcCCcc-eEeec-------ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKR-TKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~-~~~~~-------~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|+.||.|++|+..... ...+.       +|...|++|+|+|||++|||+|.|++ |||||++++++++++
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTI  277 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeee
Confidence            59999999999987654 33553       79999999999999999999999999 999999999988754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=6.6e-27  Score=210.73  Aligned_cols=196  Identities=17%  Similarity=0.224  Sum_probs=155.9

Q ss_pred             CCCC-CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPP-TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~-~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .|.. .|.+++|+|||++||+|+.|+ |+||+++.........+  .|...+..+.+++++..+++++       .|++|
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s-------~D~~v   85 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS-------FDATT   85 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE-------TTSCE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE-------CCCcE
Confidence            4555 899999999999999999865 89999988764332222  2677899999999999998888       78999


Q ss_pred             EEEeCCCCc--EEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCC---eEEEEEeccCCCcceEEEEeCCCCe
Q 022387          159 MIWDDHQSR--CIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       159 ~iWD~~~~~--~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~---~~i~~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      +|||...+.  ++..+..+ ..|.+++|+++  .++++. +++|++||+.+.   +++..+..|...+..++++++  +.
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~  163 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS--QE  163 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS--SS
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC--CC
Confidence            999998764  45566544 58999999875  455554 589999999765   445667777776666666554  47


Q ss_pred             EEEEecCCCceEEEEEcCCcc---eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          230 VLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~---~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|| +|+.||.|++|+.....   ..++.+|...|++|+|+|+|++||+||.|++ |||||..
T Consensus       164 ~l~-s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~  224 (345)
T 3fm0_A          164 LLA-SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQY  224 (345)
T ss_dssp             CEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEE
T ss_pred             EEE-EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccc
Confidence            777 49999999999987653   3478999999999999999999999999999 9999964

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.5e-26  Score=204.57  Aligned_cols=208  Identities=13%  Similarity=0.159  Sum_probs=169.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....|...|++++|+|||++||+|+.++ ++||++.+.+.+..... |...+..+.+.++++.+++++       .|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------~dg~i   98 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGS-------ADYSI   98 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTTEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEe-------CCCeE
Confidence            3467889999999999999999999765 88999998887665554 678888999998888888887       68999


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-C-----CeEEEEEcCCCe-----------EEEEEeccCCCcce
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-E-----QKIFVYNFADLK-----------LLHQIETIANPKGL  219 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~-----~~I~iwd~~~~~-----------~i~~~~~~~~~~~~  219 (298)
                      ++||+.+++.+..+.+...+.++.|+++  .++++. +     +.|++||+...+           .+..+..+.....+
T Consensus        99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B           99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            9999999999999998889999999875  444444 3     799999996442           33444444442244


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .++.+++++.++++ |+.||.|++|+...  .....+..|...|.+++|+|++++|++++.||. |+|||+++++++.++
T Consensus       179 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          179 TVAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EEEEECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeee
Confidence            55555556678875 89999999999987  345578899999999999999999999999999 999999999988764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.1e-26  Score=209.45  Aligned_cols=195  Identities=12%  Similarity=0.124  Sum_probs=149.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc--CCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGT--DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs--~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .+...+++|+|||||++||+++  .++ |+|||..+.+......  |.+.+..+.+++++..+++++        ++.++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s--------~~~~~  200 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYIT--------GSSLE  200 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEEC--------SSCEE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEecc--------ceeEE
Confidence            3445699999999999987544  444 8899999988877665  578899999999998888766        35688


Q ss_pred             EEeCCCCcEEEEee---cCCceEEEEEeCCe--EEEEE-CC----eEEEEEcCCCeE----EEEEeccCCCcceEEEEeC
Q 022387          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDR--IIVVL-EQ----KIFVYNFADLKL----LHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       160 iWD~~~~~~~~~~~---~~~~v~~v~~~~~~--l~v~~-~~----~I~iwd~~~~~~----i~~~~~~~~~~~~~~~s~~  225 (298)
                      +|+..+++.+....   +...|.++.|+++.  ++++. ++    .+++|++.....    .+.+..|..++.+++|+  
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S--  278 (365)
T 4h5i_A          201 VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD--  278 (365)
T ss_dssp             EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC--
T ss_pred             EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC--
Confidence            88888877655432   23478999998763  33333 33    688899865543    34455566665555555  


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcc-eEe-ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKR-TKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~-~~~-~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +|+.+|| +|+.||.|+|||..+.+ +.+ +.+|...|++|+|||||++|||||.|++ |||||+...
T Consensus       279 pdg~~la-sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-vrvw~ip~~  344 (365)
T 4h5i_A          279 MKGELAV-LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT-IHIIKLPLN  344 (365)
T ss_dssp             TTSCEEE-EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-EEEEECCTT
T ss_pred             CCCCceE-EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC
Confidence            4568998 49999999999998765 445 5799999999999999999999999999 999999653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=4.3e-26  Score=205.00  Aligned_cols=200  Identities=14%  Similarity=0.124  Sum_probs=155.8

Q ss_pred             cCCCCCCeEEEEE-----cC-CCCEEEEEcCCe-EEEEEcCCCce-----EEEEee-ecCCceEEEEEecCCCEEEEEeC
Q 022387           81 SSSPPPTLLHISF-----NQ-DHGCFAAGTDHG-FRIYNCDPFRE-----IFRRDF-ERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        81 ~~~~~~~V~~v~f-----s~-dg~~lasgs~~g-i~vw~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      ...|...|++++|     ++ |+++||+|+.|+ |+||++...+.     .....+ .|.+.+..+.+.+++..+++++ 
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s-   95 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS-   95 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE-
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc-
Confidence            3578889999999     76 999999999865 89999865321     111222 1677888888988888888877 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEe---ccCCCcceE
Q 022387          148 GPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIE---TIANPKGLC  220 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~---~~~~~~~~~  220 (298)
                            .|++|++||+++++.+..+..+ ..|.++.|+++  .++++. +++|++||+..... ..+.   .|...+.++
T Consensus        96 ------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           96 ------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWVSCV  168 (343)
T ss_dssp             ------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCEEEE
T ss_pred             ------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCceeeee
Confidence                  7899999999999988887754 58999999875  455554 58999999974433 3333   355555666


Q ss_pred             EEEeCCC--------CeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          221 AVSQGVG--------SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       221 ~~s~~~d--------~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +++++..        +.+++ +|+.||.|++|+........+.+|...|++++|+|+|++||+|+.||+ |+|||+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~  244 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFA-SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN  244 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEE-EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred             eeccccccccccCCCCCEEE-EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence            6665432        25666 589999999999766666789999999999999999999999999999 99999954

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=9.3e-27  Score=207.28  Aligned_cols=201  Identities=16%  Similarity=0.117  Sum_probs=150.6

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEec--CCCEEEEEeCCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLF--RCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~  156 (298)
                      ...|...|++++|+|||++||+|+.|+ ++|||+.+.+......+. |.+.+..+.+.+  +++.+++++       .|+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s-------~D~   81 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS-------YDR   81 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE-------TTS
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE-------CCC
Confidence            357888999999999999999999855 889999876543333332 677888888864  367788877       789


Q ss_pred             eEEEEeCCCCc--EEEEee-cCCceEEEEEeCC----eEEEEE-CCeEEEEEcCCCeE---EEEEeccCCCcceEEEEeC
Q 022387          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLKL---LHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~l~v~~-~~~I~iwd~~~~~~---i~~~~~~~~~~~~~~~s~~  225 (298)
                      +|+|||+++++  .+..+. +...|.+++|+++    .++++. ++.|++||++....   ...+..|...+..++++++
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            99999999874  444554 4458999999875    344444 58999999976532   2334456666666677664


Q ss_pred             C---------------CCeEEEEecCCCceEEEEEcCCc----ceEeecccccceeEEEECCCC----CEEEEEeCCCCE
Q 022387          226 V---------------GSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDG----QLLATSSTKGTL  282 (298)
Q Consensus       226 ~---------------d~~~la~sGs~dg~v~i~~~~~~----~~~~~~~H~~~V~~l~fspdg----~~lAt~S~Dgt~  282 (298)
                      .               ++.+|| +|+.||.|++|+....    ....+.+|...|++|+|+|++    ++|||||.|++ 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-  239 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-  239 (316)
T ss_dssp             CCC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-
T ss_pred             cCCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-
Confidence            2               134666 5999999999998743    345789999999999999997    89999999999 


Q ss_pred             EEEEECCC
Q 022387          283 VRIFNTLD  290 (298)
Q Consensus       283 IrIWd~~t  290 (298)
                      |+|||+++
T Consensus       240 v~iw~~~~  247 (316)
T 3bg1_A          240 VFIWTCDD  247 (316)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEccC
Confidence            99999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=3.6e-26  Score=205.93  Aligned_cols=205  Identities=15%  Similarity=0.163  Sum_probs=152.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|++++|+|||++||+|+.|+ ++||+...........+. |...+..+.+.++++.+++++       .|++|+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-------~D~~v~  130 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-------RDKSVW  130 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-------CCCeEE
Confidence            46778999999999999999999855 889999876533333332 677899999999999998888       789999


Q ss_pred             EEeCCCCc---EEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCCCCeE
Q 022387          160 IWDDHQSR---CIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       160 iWD~~~~~---~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      +||+.++.   ++..+.. ...|.++.|+++  .++++. ++.|++||+.+.+  ++.++..|...+..++|++  ++.+
T Consensus       131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~  208 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP--SGQR  208 (345)
T ss_dssp             EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT--TSSE
T ss_pred             EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC--CCCE
Confidence            99998764   3344443 457999999875  455555 5899999997765  4567777877766666655  5578


Q ss_pred             EEEecCCCceEEEEEcCCc------------------------------------------------c------------
Q 022387          231 LVCPGLQKGQVRVEHYASK------------------------------------------------R------------  250 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~------------------------------------------------~------------  250 (298)
                      || +|+.||.|++|+....                                                .            
T Consensus       209 l~-s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  287 (345)
T 3fm0_A          209 LA-SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP  287 (345)
T ss_dssp             EE-EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT
T ss_pred             EE-EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc
Confidence            88 5899999999974100                                                0            


Q ss_pred             --------eEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          251 --------TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       251 --------~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                              ...+.+|...|++|+|+|++ .+|||||.||+ |+||++.+++.+.++
T Consensus       288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~-v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE-VAFWKYQRPEGLHHH  342 (345)
T ss_dssp             TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC-EEEEEECC-------
T ss_pred             ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc-EEEEEecCCCCcccc
Confidence                    00124788999999999998 59999999999 999999999887664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=1.4e-25  Score=199.84  Aligned_cols=200  Identities=11%  Similarity=0.176  Sum_probs=161.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|+|||++|++|+.|+ ++|||+.+.+....... |...+..+.+.+++..+++++       .|++|++
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s-------~D~~i~v  133 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGS-------RDKTIKV  133 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEE-------TTSCEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEe-------CCCeEEE
Confidence            46778999999999999999999755 88999999877655543 678888888888888888877       7899999


Q ss_pred             EeCCCCcEEEEe-ecCCceEEEEEeCC--------eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          161 WDDHQSRCIGEL-SFRSEVRSVKLRRD--------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       161 WD~~~~~~~~~~-~~~~~v~~v~~~~~--------~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      ||++.. ++..+ .+...|.++.+.+.        .++.+. ++.|++||+++.+....+..|...+..+++++  ++.+
T Consensus       134 wd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp--~g~~  210 (319)
T 3frx_A          134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--DGTL  210 (319)
T ss_dssp             EETTSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT--TSSE
T ss_pred             EECCCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC--CCCE
Confidence            999754 44444 45568899998764        344444 58999999999999999998888777776665  4588


Q ss_pred             EEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          231 LVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      |+ +|+.||.|++||+...... .+. +...|.+++|+|+|.+||+++. +. |+||++..+.++.+
T Consensus       211 l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~-~~-i~v~~~~~~~~~~~  273 (319)
T 3frx_A          211 IA-SAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATA-TG-IKVFSLDPQYLVDD  273 (319)
T ss_dssp             EE-EEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEET-TE-EEEEEETTEEEEEE
T ss_pred             EE-EEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcC-CC-cEEEEeCcCeeeec
Confidence            88 5999999999999877654 554 4578999999999999999984 55 99999998776654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=7.3e-26  Score=199.61  Aligned_cols=198  Identities=11%  Similarity=0.071  Sum_probs=152.9

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecC--CCEEEEEeCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYP  154 (298)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  154 (298)
                      ..|...|.+++|++  +|++||+|+.|+ ++||++.+.+  .+..... |...+..+.+.++  +..+++++       .
T Consensus        50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s-------~  121 (297)
T 2pm7_B           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLLVAS-------S  121 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEE-------T
T ss_pred             ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCcEEEEEE-------C
Confidence            46788999999986  489999999755 8899998764  2223322 5678888888876  56777777       6


Q ss_pred             CCeEEEEeCCCCcE--EEEee-cCCceEEEEEeCC---------------eEEEEE-CCeEEEEEcCCCe----EEEEEe
Q 022387          155 LNKVMIWDDHQSRC--IGELS-FRSEVRSVKLRRD---------------RIIVVL-EQKIFVYNFADLK----LLHQIE  211 (298)
Q Consensus       155 d~~v~iWD~~~~~~--~~~~~-~~~~v~~v~~~~~---------------~l~v~~-~~~I~iwd~~~~~----~i~~~~  211 (298)
                      |++|++||++++..  ...+. +...|.++.|+++               .++++. +++|++||+++.+    ++.++.
T Consensus       122 d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~  201 (297)
T 2pm7_B          122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  201 (297)
T ss_dssp             TSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence            89999999987532  22333 4458999999875               455554 5899999997654    667788


Q ss_pred             ccCCCcceEEEEeCC-CCeEEEEecCCCceEEEEEcCCcc----eEee--cccccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387          212 TIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKR----TKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (298)
Q Consensus       212 ~~~~~~~~~~~s~~~-d~~~la~sGs~dg~v~i~~~~~~~----~~~~--~~H~~~V~~l~fspdg~~lAt~S~Dgt~Ir  284 (298)
                      .|...+..++|+++. .+.+|| +|+.||.|++|+.....    ...+  ..|...|.+++|+|+|++||+++.|++ |+
T Consensus       202 ~H~~~V~~v~~sp~~~~~~~la-s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~-v~  279 (297)
T 2pm7_B          202 GHSDWVRDVAWSPTVLLRSYMA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VT  279 (297)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC-EE
T ss_pred             CCCCceEEEEECCCCCCceEEE-EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc-EE
Confidence            888888777777753 236777 59999999999987632    2233  578899999999999999999999999 99


Q ss_pred             EEECC
Q 022387          285 IFNTL  289 (298)
Q Consensus       285 IWd~~  289 (298)
                      ||+..
T Consensus       280 lw~~~  284 (297)
T 2pm7_B          280 LWKEN  284 (297)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=7.2e-26  Score=207.46  Aligned_cols=198  Identities=16%  Similarity=0.185  Sum_probs=155.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee-----------------cCCceEEEEEecCCCEEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-----------------RGGGIGVVEMLFRCNILALV  145 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  145 (298)
                      .|...|.+++|+|||++||+|+++.++||++.+++.+......                 +...+..+.+++++..++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            4788999999999999999999888999999888765444310                 01126778888888888887


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA  221 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~  221 (298)
                      +       .|++|+|||+.+++.+..+..+ ..|.++.|+++  .++++. +++|++||+++++...++..+ ..+..++
T Consensus       142 ~-------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~  213 (393)
T 1erj_A          142 A-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVA  213 (393)
T ss_dssp             E-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred             c-------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-CCcEEEE
Confidence            7       6899999999999988887754 58999999874  455554 589999999999988777643 3344455


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcceE-ee-------cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~-------~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +++. ++.+++ +|+.||.|++||....... .+       .+|...|++|+|+|+|++||+|+.|++ |+|||++++
T Consensus       214 ~~~~-~~~~l~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~  288 (393)
T 1erj_A          214 VSPG-DGKYIA-AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNA  288 (393)
T ss_dssp             ECST-TCCEEE-EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC---
T ss_pred             EECC-CCCEEE-EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCC
Confidence            5441 457777 4999999999998876533 33       679999999999999999999999999 999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=2.2e-25  Score=199.30  Aligned_cols=209  Identities=13%  Similarity=0.134  Sum_probs=163.4

Q ss_pred             ccCCCCCCeEEEEEcCC---CCEEEEEcCCe-EEEEEcCCCceEEEEee-ecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQD---HGCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~d---g~~lasgs~~g-i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ....|...|++++|+|+   |++|++|+.++ ++||++++.+......+ .|.+.+..+.+.+++..+++++       .
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------~  106 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-------C  106 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-------C
Confidence            44678889999999999   69999999865 88999987333322222 2688899999999998888887       6


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEE--eCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCC--------------
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKL--RRDR--IIVVL-EQKIFVYNFADLKLLHQIETIAN--------------  215 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~--~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~--------------  215 (298)
                      |+.|++||+++++.+....+...|.++.|  +++.  ++++. ++.|++||+++++.+..+..+..              
T Consensus       107 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA  186 (368)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred             CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence            89999999999998887778889999999  6653  44444 58999999998887777664431              


Q ss_pred             ---------------------------CcceEEEEeCCCC--eEEEEecCCCceEEEEEcCCc----ceEeeccccc---
Q 022387          216 ---------------------------PKGLCAVSQGVGS--LVLVCPGLQKGQVRVEHYASK----RTKFIMAHDS---  259 (298)
Q Consensus       216 ---------------------------~~~~~~~s~~~d~--~~la~sGs~dg~v~i~~~~~~----~~~~~~~H~~---  259 (298)
                                                 ...++++..+...  ..++ +|+.||.|++|++...    ....+.+|..   
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  265 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA-LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT  265 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE-EEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE-EecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence                                       1223333333321  2255 4899999999999874    3457778876   


Q ss_pred             ---------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          260 ---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       260 ---------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                               .|++++|+|+|++||+++.||. |+|||+.++++++++
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTS  311 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEEC
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEe
Confidence                     7999999999999999999999 999999999998775

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=4e-27  Score=218.50  Aligned_cols=204  Identities=12%  Similarity=0.078  Sum_probs=155.7

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEee-ecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|+||+|+| ++++||+|+.|| |+|||+++........+ .|.+.|..+.+.+ +++.+++++       .|++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-------~D~~  188 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-------MEGT  188 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-------SSSC
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-------CCCE
Confidence            34667899999999 567999999866 88999987765444433 2677888999885 567777776       6899


Q ss_pred             EEEEeCCCCcEEEEeecC---CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          158 VMIWDDHQSRCIGELSFR---SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~---~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      |+|||++++........+   ..+.++.|+++  .++++. ++.|++||++. +.+.++..|...+..++|+++.+ .++
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~-~~~  266 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD-WFL  266 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-SEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-eEE
Confidence            999999876544333332   24678888875  344443 48999999864 55677788888777777766542 245


Q ss_pred             EEecCCCceEEEEEcCCcc----eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          232 VCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      + +|+.||.|++||+....    .....+|...|++|+|+|+|++|||++.||+ |+|||+.++++...
T Consensus       267 ~-s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~  333 (435)
T 4e54_B          267 A-TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLG  333 (435)
T ss_dssp             E-EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEE
T ss_pred             E-EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceE
Confidence            4 58999999999987543    2245689999999999999999999999999 99999999876644

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-25  Score=201.12  Aligned_cols=198  Identities=16%  Similarity=0.226  Sum_probs=152.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC-------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      |...|++++|+|+|++||+|+.|+ ++||+++..       +....... |.+.+..+.+++++..+++++       .|
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~s-------~D  128 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATCS-------RD  128 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEE-------TT
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEEEe-------CC
Confidence            778999999999999999999755 899998532       22222222 677889999999999888888       78


Q ss_pred             CeEEEEeCCCC----cEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCC--eEEEEEeccCCCcceEEEEeC
Q 022387          156 NKVMIWDDHQS----RCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       156 ~~v~iWD~~~~----~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~--~~i~~~~~~~~~~~~~~~s~~  225 (298)
                      ++|++||++..    +++..+.. ...|.++.|+++  .++++. +++|++||+.+.  +++.++..|...+..++|+++
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            99999999532    34555554 458999999875  455554 589999999765  678888889888888888877


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCc---------ceEeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASK---------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~---------~~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .++.+|+ +|+.||.|++|++...         ....+.. |...|++|+|++++ +||+++.||+ |+|||..+++
T Consensus       209 ~~~~~l~-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~  282 (330)
T 2hes_X          209 EGVFRLC-SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGE  282 (330)
T ss_dssp             SSSCEEE-EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTE
T ss_pred             CCeeEEE-EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCc
Confidence            5566777 5999999999998643         1234544 99999999999765 8999999999 9999998873

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=4e-26  Score=204.22  Aligned_cols=200  Identities=13%  Similarity=0.161  Sum_probs=163.9

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEe--eecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRD--FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|++++|+| ++++|++|+.++ ++|||+.+.+......  ..|...+..+.+.+++..+++++       .|+.
T Consensus       112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~  184 (366)
T 3k26_A          112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-------MDHS  184 (366)
T ss_dssp             ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec-------CCCC
Confidence            46788999999999 999999999865 8899999887765541  11578889999999888888887       6799


Q ss_pred             EEEEeCCCCcEEEEee-----------------------------cCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCe--
Q 022387          158 VMIWDDHQSRCIGELS-----------------------------FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLK--  205 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~-----------------------------~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~--  205 (298)
                      |++||+++++.+..+.                             +...|.++.|+++.++++. ++.|++||+.+.+  
T Consensus       185 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  264 (366)
T 3k26_A          185 LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDD  264 (366)
T ss_dssp             EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCC
T ss_pred             EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCcccc
Confidence            9999998865443322                             4568999999977777765 5899999997653  


Q ss_pred             ------------EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-----eEeeccc--ccceeEEEE
Q 022387          206 ------------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAH--DSRIACFAL  266 (298)
Q Consensus       206 ------------~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H--~~~V~~l~f  266 (298)
                                  .+..+..|...+..+++++++++.+|++ |+.||.|++|++....     ...+.+|  ...|++|+|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL-GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE-ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEE
T ss_pred             ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE-EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEe
Confidence                        4788888888888999999865688884 8999999999998653     3367777  799999999


Q ss_pred             CCCCCEEEEEeCCCCEEEEEECCC
Q 022387          267 TQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       267 spdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +|+|++||+++.||. |+|||+.+
T Consensus       344 s~~~~~l~s~~~dg~-i~iwd~~~  366 (366)
T 3k26_A          344 SRDSSILIAVCDDAS-IWRWDRLR  366 (366)
T ss_dssp             CTTSSEEEEEETTSE-EEEEEC--
T ss_pred             CCCCCeEEEEeCCCE-EEEEEecC
Confidence            999999999999999 99999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=2.9e-25  Score=197.06  Aligned_cols=208  Identities=13%  Similarity=0.099  Sum_probs=164.6

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCce---EEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE---IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ..+|.+.|++|+|+|+ +++||||+.|+ |+||++...+.   .....+. |...+..+.+.+++..+++++       .
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-------~  106 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-------W  106 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-------c
Confidence            4679999999999998 68999999865 89999976542   1122221 677899999999999888887       7


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEE-EEeccCCCcceEEEEeCCCCe
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~-~~~~~~~~~~~~~~s~~~d~~  229 (298)
                      |+.|++|+............. ..+..+.+.+  ..++++. ++.+++||+....... .+..|...+..+++++++...
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            899999999998777666554 3566666654  4555554 5899999997655433 334566677778888877767


Q ss_pred             EEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          230 VLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +++ +|+.|+.|++|+...... ..+.+|...|++|+|+|+|++||+|+.||+ |+|||++++++++.+
T Consensus       187 ~~~-s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          187 IIV-SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTL  253 (340)
T ss_dssp             EEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred             EEE-EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeee
Confidence            777 589999999999987654 478899999999999999999999999999 999999999988764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.9e-25  Score=218.90  Aligned_cols=206  Identities=14%  Similarity=0.095  Sum_probs=163.9

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCce-----EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ..|...|++|+|++++ ++|++|+.|+ |+||++.....     ...... |.+.+..+.+++++..+++++       .
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs-------~  450 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGS-------W  450 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEe-------C
Confidence            5799999999999875 7999999865 88999875421     122222 678899999999999888887       7


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEE---eccCCCcceEEEEeCCC
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVG  227 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~---~~~~~~~~~~~~s~~~d  227 (298)
                      |++|+|||+.+++.+..+..+ ..|.++.|+++  .++++. +++|++||+.........   ..|...+.+++++++..
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            899999999999988887654 58999999875  455555 589999998655433222   23555566677776654


Q ss_pred             CeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..+++ +|+.||.|++||+..... .++.+|.+.|++|+|+|+|++|||||.||+ |+|||++++++++++
T Consensus       531 ~~~l~-s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~  599 (694)
T 3dm0_A          531 QPTIV-SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSL  599 (694)
T ss_dssp             SCEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECC
T ss_pred             cceEE-EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEe
Confidence            45666 599999999999987654 478999999999999999999999999999 999999999988654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=1.5e-25  Score=213.74  Aligned_cols=191  Identities=17%  Similarity=0.252  Sum_probs=156.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|||++||+|+.++ ++||+.. .+.+..... |...+..+.+++++..+++++       .|++|++
T Consensus       382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~-------~d~~v~~  452 (577)
T 2ymu_A          382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDDQTIASAS-------DDKTVKL  452 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEEC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEE
T ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecC-CCCCeEEEEECCCCCEEEEEc-------CCCEEEE
Confidence            45778999999999999999999865 8899964 333333332 677888889999999888887       6899999


Q ss_pred             EeCCCCcEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||.. ++.+..+. +...|.+++|+++  .++++. ++.|++||. ++++++++..|...+..++|++  ++.+|| +|+
T Consensus       453 w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~--dg~~l~-s~~  527 (577)
T 2ymu_A          453 WNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP--DGQTIA-SAS  527 (577)
T ss_dssp             EETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT--TSSCEE-EEE
T ss_pred             EECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC--CCCEEE-EEE
Confidence            9974 45555555 4568999999875  444444 579999995 6788899999888777777665  457888 489


Q ss_pred             CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .||.|++||.+.+.+.++.+|.+.|++|+|+|||++|+|+|.|++ |+|||
T Consensus       528 ~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~-i~~Wd  577 (577)
T 2ymu_A          528 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT-VKLWN  577 (577)
T ss_dssp             TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC-EEEEC
T ss_pred             CcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEeC
Confidence            999999999887778899999999999999999999999999999 99997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.8e-25  Score=198.00  Aligned_cols=197  Identities=13%  Similarity=0.156  Sum_probs=152.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce--EEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|.+++|+++  +||+|+.|+ ++||++.....  ....... |.+.+..+.+.+++..+++++       .|++
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-------~D~~   81 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-------FDST   81 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe-------CCCc
Confidence            468889999999998  999998755 89999987532  2222111 567889999999999888887       6899


Q ss_pred             EEEEeCCC-------CcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCC----CeEEEEEeccCCCcceEEE
Q 022387          158 VMIWDDHQ-------SRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFAD----LKLLHQIETIANPKGLCAV  222 (298)
Q Consensus       158 v~iWD~~~-------~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~----~~~i~~~~~~~~~~~~~~~  222 (298)
                      |+|||...       .+.+..+.. ...|.++.|+++  .++++. +++|++||++.    .+++..+..|...+..+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            99999853       234455554 458999999875  455554 58999999942    3567788888777766666


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCc---ceEeecccccceeEEEECCC--CCEEEEEeCCCCEEEEEECCCC
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~---~~~~~~~H~~~V~~l~fspd--g~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +++  +.+|+ +|+.||.|++|+....   .+..+.+|...|++++|+|+  +.+||+||.|++ |||||++++
T Consensus       162 ~p~--~~~l~-s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~  231 (330)
T 2hes_X          162 HPS--EALLA-SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGD  231 (330)
T ss_dssp             CSS--SSEEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEE
T ss_pred             CCC--CCEEE-EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCC
Confidence            654  47787 5999999999997654   45688999999999999999  789999999999 999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=8.6e-25  Score=192.25  Aligned_cols=194  Identities=15%  Similarity=0.200  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      +++|+||+++ +||+|.++.|+|||+++++.+....+. |...+..+.+.++++.+++++       .|++|++||++++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs-------~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE-------CCCcEEEeecCCc
Confidence            4679999986 899999999999999998876665542 455688899999999988887       7899999999998


Q ss_pred             cEEEEeecCC-ce-----------------------------------------EEEEEeC--CeEEEEE-CCeEEEEEc
Q 022387          167 RCIGELSFRS-EV-----------------------------------------RSVKLRR--DRIIVVL-EQKIFVYNF  201 (298)
Q Consensus       167 ~~~~~~~~~~-~v-----------------------------------------~~v~~~~--~~l~v~~-~~~I~iwd~  201 (298)
                      +.+..+..+. .+                                         ..+.+.+  ..++++. ++.|++||+
T Consensus       100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            8776654322 22                                         2222222  1333333 478888888


Q ss_pred             CCCeEE----EEEe--------------------------------------------ccCCCcceEEEEeCCCCeEEEE
Q 022387          202 ADLKLL----HQIE--------------------------------------------TIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       202 ~~~~~i----~~~~--------------------------------------------~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ++++..    ....                                            .+...+..+.+++..+ .++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  258 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISG  258 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT-EEEEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc-ceEEE
Confidence            643210    0000                                            0111122334444433 34444


Q ss_pred             ecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +|+.||.|++||+.+.. +.++.+|.+.|++|+|+|||++|||||.||+ |||||+.+.
T Consensus       259 sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~-v~iWd~~~~  316 (318)
T 4ggc_A          259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFEL  316 (318)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCC
T ss_pred             EEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCC
Confidence            57899999999998654 5689999999999999999999999999999 999998765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=7e-25  Score=202.35  Aligned_cols=206  Identities=13%  Similarity=0.209  Sum_probs=144.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC----------
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD----------  150 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  150 (298)
                      ..|...|++|+|+|||++||+|+.++ |+||++++.+.+..... |...+  ..+.+++..++.++....          
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v--~~~s~~~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCE--EEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCce--EEEeeCCCEEEEEeCCCceeEeeecccc
Confidence            45667899999999999999999866 88999999887666553 34444  444556666665541100          


Q ss_pred             --------------------------CCCCCCeEEEEeCCCCcE----EEE-eecCCceEEEEEeC---CeEEEEE---C
Q 022387          151 --------------------------PQYPLNKVMIWDDHQSRC----IGE-LSFRSEVRSVKLRR---DRIIVVL---E  193 (298)
Q Consensus       151 --------------------------~~~~d~~v~iWD~~~~~~----~~~-~~~~~~v~~v~~~~---~~l~v~~---~  193 (298)
                                                ....|+.|++||..+++.    +.. ..+...|.++.|++   ..+++++   +
T Consensus       221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence                                      001244455555544321    111 12334677788765   2444443   4


Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCE
Q 022387          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQL  272 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~  272 (298)
                      ++|++||+.+++++..+..+.. +..+.++++.+ .+++++|..||.|+||++.+.. +.++.+|.+.|++|+|+|||++
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~~~-v~~~~~~~~~~-~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~  378 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECSSC-EEEEEEETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred             CEEEEEeCCccccceeeccccc-eeeeeecCCCC-eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            7999999999999988887643 44455555543 3444457789999999997654 5689999999999999999999


Q ss_pred             EEEEeCCCCEEEEEECCCCcE
Q 022387          273 LATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       273 lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      |||||.|++ |||||+.+...
T Consensus       379 l~S~s~D~t-vriWdv~~~~~  398 (420)
T 4gga_A          379 VASAAADET-LRLWRCFELDP  398 (420)
T ss_dssp             EEEEETTTE-EEEECCSCSSC
T ss_pred             EEEEecCCe-EEEEECCCCCc
Confidence            999999999 99999986543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=3.5e-25  Score=201.00  Aligned_cols=202  Identities=11%  Similarity=0.097  Sum_probs=160.1

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEee-ecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDF-ERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|++++|+|+| ++||+|+.++ ++||++.+.+....... .|...+..+.+.+ ++..+++++       .|++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d~~  142 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-------IRGA  142 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-------TTTE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-------CCCE
Confidence            5677899999999999 8999999865 88999998776555542 2577888888887 567777776       6899


Q ss_pred             EEEEeCCCCcEEEEeec-C---CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe-
Q 022387          158 VMIWDDHQSRCIGELSF-R---SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL-  229 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~-~---~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~-  229 (298)
                      |++||++.. .+..+.. .   ..|.++.|+++  .++++. ++.|++||+ +++.+.++..|...+..+++++++  . 
T Consensus       143 i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~--~~  218 (383)
T 3ei3_B          143 TTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC--DW  218 (383)
T ss_dssp             EEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC--TT
T ss_pred             EEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC--CC
Confidence            999999964 4444432 2   46999999874  455554 489999999 577888998888777777776654  5 


Q ss_pred             EEEEecCCCceEEEEEcCC----cceEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          230 VLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~----~~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +++ +|+.||.|++||+..    .......+|...|++++|+| +|++||+++.|++ |+|||+++++++.+
T Consensus       219 ~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          219 LMA-TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQ  288 (383)
T ss_dssp             EEE-EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSE
T ss_pred             EEE-EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccc
Confidence            565 589999999999986    44444347999999999999 9999999999999 99999999876544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=6.4e-25  Score=199.64  Aligned_cols=159  Identities=13%  Similarity=0.066  Sum_probs=125.5

Q ss_pred             eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEE
Q 022387          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLL  207 (298)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i  207 (298)
                      +.++++++++..+++++++     .|++|+|||+++++++.++.+...|.+++|+++  .++++.++.+++|+..+++.+
T Consensus       136 ~~~v~fSpDg~~la~as~~-----~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSK-----VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI  210 (365)
T ss_dssp             EEEEEECTTSSCEEEEESC-----SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred             EEEEEEcCCCCEEEEEECC-----CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence            4467778888888888866     479999999999999999998889999999986  455566788999998877765


Q ss_pred             EEEe--ccCCCcceEEEEeCCCCeEEEEecCCCc----eEEEEEcCCcc-----eEeecccccceeEEEECCCCCEEEEE
Q 022387          208 HQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       208 ~~~~--~~~~~~~~~~~s~~~d~~~la~sGs~dg----~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspdg~~lAt~  276 (298)
                      ....  .|...+..++|+++  +.++++ ++.++    .+++|+.....     ...+.+|...|++|+|||||++||+|
T Consensus       211 ~~~~~~~~~~~v~~v~fspd--g~~l~~-~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIAD--DTVLIA-ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEET--TEEEEE-EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred             eeeecCCCCCCEEEEEEcCC--CCEEEE-EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence            5433  34444555666665  477774 55555    56668876543     23677899999999999999999999


Q ss_pred             eCCCCEEEEEECCCCcEEEec
Q 022387          277 STKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       277 S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.|++ |+|||++++++++++
T Consensus       288 s~D~~-V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          288 SNDNS-IALVKLKDLSMSKIF  307 (365)
T ss_dssp             ETTSC-EEEEETTTTEEEEEE
T ss_pred             cCCCE-EEEEECCCCcEEEEe
Confidence            99999 999999999998875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.8e-25  Score=198.78  Aligned_cols=203  Identities=17%  Similarity=0.181  Sum_probs=157.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecC--CCEEEEEeCCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPLN  156 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~  156 (298)
                      ...|...|++++|+|||++||+|+.++ ++||+++.........+. |...+..+.+.++  ++.+++++       .|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-------~dg   79 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   79 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTS
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-------cCC
Confidence            457888999999999999999998765 889999854433333332 6778888888766  77888877       689


Q ss_pred             eEEEEeCCCCc--EEEEee-cCCceEEEEEeCC----eEEEEE-CCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCC
Q 022387          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      .|++||+.+++  .+..+. +...|.++.|+++    .++++. ++.|++||+.+.+  ....+..|...+..+++++..
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999986  445554 4468999999875    455554 5899999997763  334555666666666666531


Q ss_pred             -----------CCeEEEEecCCCceEEEEEcCCcc-----eEeecccccceeEEEECCC---CCEEEEEeCCCCEEEEEE
Q 022387          227 -----------GSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       227 -----------d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspd---g~~lAt~S~Dgt~IrIWd  287 (298)
                                 ++.++++ |+.||.|++|++....     ...+.+|...|++++|+|+   +++||+++.||+ |+|||
T Consensus       160 ~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd  237 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWT  237 (379)
T ss_dssp             ----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred             ccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEe
Confidence                       4577774 8999999999987542     2467899999999999999   999999999999 99999


Q ss_pred             CCCCc
Q 022387          288 TLDGT  292 (298)
Q Consensus       288 ~~tg~  292 (298)
                      +++++
T Consensus       238 ~~~~~  242 (379)
T 3jrp_A          238 QDNEQ  242 (379)
T ss_dssp             ESSTT
T ss_pred             CCCCC
Confidence            99874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=9e-25  Score=196.34  Aligned_cols=199  Identities=11%  Similarity=0.090  Sum_probs=153.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|+|++.+|++|+.|+ ++|||+.+.+.+..... |...+..+.+.+++..+++++       .|++|++
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~-------~d~~i~~  144 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAG-------AEREIKL  144 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEE-------TTSCEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEc-------CCCEEEE
Confidence            46778999999999999999999755 88999998877655543 678899999999999888887       6899999


Q ss_pred             EeCCCCcEEEEe---ecCCceEEEEEeCC------------eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe
Q 022387          161 WDDHQSRCIGEL---SFRSEVRSVKLRRD------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       161 WD~~~~~~~~~~---~~~~~v~~v~~~~~------------~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      ||+.........   .+...|.++.|+++            .++++. ++.|++|| .+.+...++..|...+..+++++
T Consensus       145 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             EESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECT
T ss_pred             EeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECC
Confidence            999854333222   23457999999875            344444 58999999 45677788888877766666655


Q ss_pred             CCCCeEEEEecCCCceEEEEEcC-CcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~-~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                        ++.+|| +|+.||.|++||+. .........|...|++|+|+|++++||+++ |+. |+|||+.+++.+
T Consensus       224 --~g~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~~~~  289 (343)
T 2xzm_R          224 --NGKYIA-TGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQSKA  289 (343)
T ss_dssp             --TSSEEE-EEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSCCSC
T ss_pred             --CCCEEE-EEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCCCCC
Confidence              558888 59999999999984 333323334566799999999999887664 888 999999887643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.1e-25  Score=225.09  Aligned_cols=200  Identities=9%  Similarity=0.117  Sum_probs=160.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|||++||+|+.+| |+||+....+......  |...+..+.+++ +..+++++       .|++|+|
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s-------~D~~v~l   83 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVIN-------AKDTVYV   83 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEE-------TTCEEEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CCEEEEEE-------CcCeEEE
Confidence            46778999999999999999999866 8899988766544433  567788899888 66677776       6899999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEE-----------EEEeccCCCcceEEEEeCC
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLL-----------HQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i-----------~~~~~~~~~~~~~~~s~~~  226 (298)
                      ||+++++++..+.+...|.++.|+++  .++++. ++.|++||+.+.++.           ..+..|..++..++++++.
T Consensus        84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence            99999999988888889999999875  455554 589999999888763           1223455666677776642


Q ss_pred             CCeEEEEecCCCceEEEEEcCCcce-Eeeccc------------------ccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------------------DSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H------------------~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                       ...++ +|+.||.| +||+..... ..+..|                  ...|++|+|+|||++||||+.||+ |+|||
T Consensus       164 -~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd  239 (902)
T 2oaj_A          164 -IGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWD  239 (902)
T ss_dssp             -EEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEE
T ss_pred             -CCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEE
Confidence             24555 48999999 999987654 355544                  578999999999999999999999 99999


Q ss_pred             CCCCcEEE
Q 022387          288 TLDGTLLQ  295 (298)
Q Consensus       288 ~~tg~~l~  295 (298)
                      +++|+++.
T Consensus       240 ~~~g~~~~  247 (902)
T 2oaj_A          240 ANSGHMIM  247 (902)
T ss_dssp             TTTCCEEE
T ss_pred             CCCCcEEE
Confidence            99998865

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=4.2e-24  Score=188.90  Aligned_cols=202  Identities=9%  Similarity=0.149  Sum_probs=164.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .|...|.+++|+|++++|++|+.++ +++|+++..+......+. |...+..+.+.+++..+++++       .|+.|++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~v~~  167 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIAV  167 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe-------CCCcEEE
Confidence            5677999999999999999998755 889999887633333221 566788888888888888877       6799999


Q ss_pred             EeCCCCcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||+++++.+..+.. ...+.++.|+++  .++++. ++.|++||+++++.+..+. +...+..  +.+++++.++++ |+
T Consensus       168 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~--~~~s~~~~~l~~-~~  243 (337)
T 1gxr_A          168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFS--LGYCPTGEWLAV-GM  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE--EEECTTSSEEEE-EE
T ss_pred             EeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEE--EEECCCCCEEEE-Ec
Confidence            99999998888774 468999999875  455554 5899999999999887765 3344444  444555678885 88


Q ss_pred             CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      .+|.|++|+........+..|...|++++|+|+|++|++++.||. |+|||+.+++.+..
T Consensus       244 ~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQ  302 (337)
T ss_dssp             TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred             CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEE
Confidence            999999999998888888999999999999999999999999999 99999999987754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=1.5e-24  Score=191.54  Aligned_cols=198  Identities=14%  Similarity=0.204  Sum_probs=161.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|+|++++|++|+.++ +++||+.+.+.+..... |...+..+.+.+++..+++++       .|+.|++
T Consensus       104 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~d~~i~~  175 (312)
T 4ery_A          104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSS-------YDGLCRI  175 (312)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCCCEEEEEe-------CCCcEEE
Confidence            56778999999999999999999865 88999998877655543 577888889988888888877       6899999


Q ss_pred             EeCCCCcEEEEeec--CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe-CCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSF--RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~--~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~-~~d~~~la~s  234 (298)
                      ||+++++.+..+..  ...+..+.|+++  .++++. ++.|++||+++++.+..+..|......+.... .+++.+++ +
T Consensus       176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s  254 (312)
T 4ery_A          176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-S  254 (312)
T ss_dssp             EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE-E
T ss_pred             EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE-E
Confidence            99999988777643  347888999875  455544 58999999999999999988766544432222 23456776 5


Q ss_pred             cCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEe--CCCCEEEEEECC
Q 022387          235 GLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTL  289 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S--~Dgt~IrIWd~~  289 (298)
                      |+.||.|++|++..+.+ ..+.+|...|.+++|+|++++||+++  .|++ |+||+..
T Consensus       255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~-i~~W~~d  311 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT-IKLWKSD  311 (312)
T ss_dssp             CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCC-EEEEECC
T ss_pred             ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCcc-EEEecCC
Confidence            99999999999987664 58899999999999999999999997  6999 9999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-25  Score=206.47  Aligned_cols=206  Identities=12%  Similarity=0.202  Sum_probs=157.4

Q ss_pred             cccCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCC---Cc---eEEEEeeecCCceEEEEEecCCCEEEEEeCCCC
Q 022387           79 STSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDP---FR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (298)
Q Consensus        79 ~~~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (298)
                      .+...|...|++++|+| ||++||+|+.|+ ++||++.+   ..   ......  |.+.+..+.+.+++..+++++    
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s----  130 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQITMIPNFDAFAVSS----  130 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEEEECTTSSEEEEEE----
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc--CCCCEEEEEEeCCCCEEEEEe----
Confidence            34366888999999999 999999999866 88999866   22   222322  688899999998888888887    


Q ss_pred             CCCCCCeEEEEeCC---CCcEEEEee-------------cCCceEEEEE--eC--CeEEEEE-CCeEEEEEcCCCeEEEE
Q 022387          151 PQYPLNKVMIWDDH---QSRCIGELS-------------FRSEVRSVKL--RR--DRIIVVL-EQKIFVYNFADLKLLHQ  209 (298)
Q Consensus       151 ~~~~d~~v~iWD~~---~~~~~~~~~-------------~~~~v~~v~~--~~--~~l~v~~-~~~I~iwd~~~~~~i~~  209 (298)
                         .|++|++||+.   +++.+..+.             ....+.++.+  ++  ..++++. ++.|++||+++++++.+
T Consensus       131 ---~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          131 ---KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             ---TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ---CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence               78999999995   554444332             2224555553  23  3455554 48999999999999999


Q ss_pred             Eec--cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeec-ccccceeEEEEC----CCCCEEEEEeCCCC
Q 022387          210 IET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM-AHDSRIACFALT----QDGQLLATSSTKGT  281 (298)
Q Consensus       210 ~~~--~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~-~H~~~V~~l~fs----pdg~~lAt~S~Dgt  281 (298)
                      +..  |...+..++++  +++.+|+ +|+.||.|++||+..... .++. .|...|++|+|+    |++++||+|+.||+
T Consensus       208 ~~~~~h~~~v~~~~~s--~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          208 IENSPRHGAVSSICID--EECCVLI-LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             EECCGGGCCEEEEEEC--TTSCEEE-EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             EccCCCCCceEEEEEC--CCCCEEE-EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            988  56655555554  4568888 499999999999987654 4555 788899999555    57889999999999


Q ss_pred             EEEEEECCCCcEEEec
Q 022387          282 LVRIFNTLDGTLLQEG  297 (298)
Q Consensus       282 ~IrIWd~~tg~~l~~~  297 (298)
                       |+|||++++++++++
T Consensus       285 -i~iwd~~~~~~~~~~  299 (437)
T 3gre_A          285 -LTIWNFVKGHCQYAF  299 (437)
T ss_dssp             -EEEEETTTTEEEEEE
T ss_pred             -EEEEEcCCCcEEEEE
Confidence             999999999988765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.6e-25  Score=202.87  Aligned_cols=204  Identities=15%  Similarity=0.173  Sum_probs=154.8

Q ss_pred             cCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEee----ecCCceEEEEEec-CCCEEEEEeCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDF----ERGGGIGVVEMLF-RCNILALVGGGPDPQY  153 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (298)
                      ...|...|.++.|+|++ .+|++|+.|+ +++||+.+.+.+.....    .|...+..+.+.. +++.+++++       
T Consensus       153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs-------  225 (380)
T 3iz6_a          153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS-------  225 (380)
T ss_dssp             CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE-------
T ss_pred             ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE-------
Confidence            45778899999999974 5788888755 89999998876554421    1455666666654 567777766       


Q ss_pred             CCCeEEEEeCCC-CcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-----cceEEEE
Q 022387          154 PLNKVMIWDDHQ-SRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANP-----KGLCAVS  223 (298)
Q Consensus       154 ~d~~v~iWD~~~-~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-----~~~~~~s  223 (298)
                      .|++|++||++. ++.+..+.. ...|.++.|+++  .++++. +++|++||+++++.+..+..+...     ..+.++.
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~  305 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA  305 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred             CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence            689999999984 566666654 468999999986  344444 589999999999998888654321     1123444


Q ss_pred             eCCCCeEEEEecCCCceEEEEEcCCcce-Eee----cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~----~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      +++++.++++ |+.||.|++||...... ..+    .+|...|++|+|+|||++|||||.|++ |+||++..++.
T Consensus       306 ~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~iW~~~~~~~  378 (380)
T 3iz6_a          306 FSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN-LKIWAFSGHRK  378 (380)
T ss_dssp             ECSSSSEEEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC-EEEEECCSSSS
T ss_pred             ECCCCCEEEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC-EEEEecCCCcc
Confidence            4455688884 99999999999876543 344    689999999999999999999999999 99999987754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=1.4e-24  Score=210.09  Aligned_cols=203  Identities=14%  Similarity=0.189  Sum_probs=164.6

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|++++|+|++. +|++|+.|+ +++|+..+.+....... |...+..+.+++++..+++++       .|++|+
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s-------~D~~i~  215 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTG-------GDGTIV  215 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEE-------CCCcEE
Confidence            56788999999999997 599998855 89999988766544443 677899999999999888888       789999


Q ss_pred             EEeCCCCcEEEEee--------cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-cceEEEEeCCC
Q 022387          160 IWDDHQSRCIGELS--------FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANP-KGLCAVSQGVG  227 (298)
Q Consensus       160 iWD~~~~~~~~~~~--------~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-~~~~~~s~~~d  227 (298)
                      |||..+++.+..+.        +...|.+++|+++  .++++. +++|++||+.+++++.++..+... .....+.+++ 
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  294 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-  294 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS-
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC-
Confidence            99999999888773        4568999999975  455554 589999999999999888754321 2234444543 


Q ss_pred             CeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                       ..++ +++.||.+++|+..... ...+.+|...|++|+|+|||++|||++.|++ |+|||+.++++.+.
T Consensus       295 -~~l~-s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~-v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          295 -QALV-SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRV  361 (611)
T ss_dssp             -SCEE-EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEC
T ss_pred             -CEEE-EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCceeee
Confidence             5565 48999999999988765 3478899999999999999999999999999 99999999887653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=7.9e-27  Score=211.02  Aligned_cols=197  Identities=12%  Similarity=0.089  Sum_probs=147.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      +..+|++++|+|||++||+|+.++ ++||++.+..  ....... |...+..+.+.++++.+++++       .|++|++
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s-------~d~~v~v   81 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCS-------QDRNAYV   81 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEE-------TTSSEEE
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEe-------CCCeEEE
Confidence            456899999999999999998755 8899999873  3222222 677889999999888888888       6899999


Q ss_pred             EeCCCCc---EEEEe-ecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCe---EEEEEec-cCCCcceEEEEeCCCCe
Q 022387          161 WDDHQSR---CIGEL-SFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLK---LLHQIET-IANPKGLCAVSQGVGSL  229 (298)
Q Consensus       161 WD~~~~~---~~~~~-~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~---~i~~~~~-~~~~~~~~~~s~~~d~~  229 (298)
                      ||+.+++   ....+ .+...|.++.|+++  .++++. ++.|++||+++.+   .++.+.. |...+..+++++  ++.
T Consensus        82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~  159 (377)
T 3dwl_C           82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP--NNV  159 (377)
T ss_dssp             C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT--TSS
T ss_pred             EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC--CCC
Confidence            9999876   33333 45568999999864  455555 5899999998776   3677776 666666666655  557


Q ss_pred             EEEEecCCCceEEEEEcCC-------------------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          230 VLVCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~-------------------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +|+ +|+.||.|++|++..                   ..+..+ +|...|++++|+|+|++||+++.||+ |+|||+++
T Consensus       160 ~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~  236 (377)
T 3dwl_C          160 LLA-AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSA  236 (377)
T ss_dssp             EEE-EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECS
T ss_pred             EEE-EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCC
Confidence            887 489999999999852                   123355 89999999999999999999999999 99999999


Q ss_pred             CcE
Q 022387          291 GTL  293 (298)
Q Consensus       291 g~~  293 (298)
                      +++
T Consensus       237 ~~~  239 (377)
T 3dwl_C          237 PEQ  239 (377)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=1.8e-24  Score=206.27  Aligned_cols=200  Identities=18%  Similarity=0.258  Sum_probs=162.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|+|||++||+|+.++ +++|+.. .+.+..... |...+..+.+++++..+++++       .|+.|++
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~-------~d~~v~~  411 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASAS-------DDKTVKL  411 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEEC-CSSCEEEEEECTTSSCEEEEE-------TTSEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecC-CCCCeEEEEECCCCCEEEEEe-------CCCEEEE
Confidence            45678999999999999999999866 7899964 344333332 678888999999999988887       6899999


Q ss_pred             EeCCCCcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||. +++.+..+.. ...|.++.|+++  .++++. ++.|++||. +.+.+.++..|...+..++|++  ++.+|| +|+
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp--d~~~la-s~~  486 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP--DGQTIA-SAS  486 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT--TSCEEE-EEE
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC--CCCEEE-EEe
Confidence            996 4566666554 468999999875  444444 589999996 5677888888887776666665  558888 489


Q ss_pred             CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .||.|++|+.+.+.+..+.+|...|++|+|+|||++||+++.||+ |+|||. +|++++++
T Consensus       487 ~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~-~~~~~~~~  545 (577)
T 2ymu_A          487 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTL  545 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT-TSCEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC-CCCEEEEE
Confidence            999999999887778899999999999999999999999999999 999995 67777664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.94  E-value=8.5e-25  Score=196.45  Aligned_cols=203  Identities=13%  Similarity=0.084  Sum_probs=159.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .|..+|++++|+|||++||+|+.++ ++||++++.+  ....... |...+..+.+.+++..+++++       .|++|+
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-------~dg~i~   77 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG-------TDRNAY   77 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEE-------TTSCEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEc-------CCCeEE
Confidence            4677999999999999999997755 8899999886  4333332 678899999999999888887       679999


Q ss_pred             EEeCCCCcEEEEe---ecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeE---EEEE-eccCCCcceEEEEeCCCCe
Q 022387          160 IWDDHQSRCIGEL---SFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKL---LHQI-ETIANPKGLCAVSQGVGSL  229 (298)
Q Consensus       160 iWD~~~~~~~~~~---~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~---i~~~-~~~~~~~~~~~~s~~~d~~  229 (298)
                      +||+.+++....+   .+...|.++.|+++  .++++. ++.|++||+...+.   ...+ ..|...+..+++  .+++.
T Consensus        78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~  155 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW--HPNSV  155 (372)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE--CTTSS
T ss_pred             EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE--cCCCC
Confidence            9999988755443   34568999999865  455555 48999999976652   3333 234444444454  45567


Q ss_pred             EEEEecCCCceEEEEEcC------------------C-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          230 VLVCPGLQKGQVRVEHYA------------------S-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~------------------~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ++++ |+.||.|++|++.                  . ..+..+..|...|++++|+|++++|++++.||. |+|||+++
T Consensus       156 ~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~  233 (372)
T 1k8k_C          156 LLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADK  233 (372)
T ss_dssp             EEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGG
T ss_pred             EEEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence            8874 8999999999953                  2 345578899999999999999999999999999 99999999


Q ss_pred             CcEEEec
Q 022387          291 GTLLQEG  297 (298)
Q Consensus       291 g~~l~~~  297 (298)
                      +++++++
T Consensus       234 ~~~~~~~  240 (372)
T 1k8k_C          234 KMAVATL  240 (372)
T ss_dssp             TTEEEEE
T ss_pred             CceeEEE
Confidence            9988765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=1e-24  Score=197.79  Aligned_cols=203  Identities=13%  Similarity=0.147  Sum_probs=164.0

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEee------------ecCCceEEEEEec-CCCEEEEEe
Q 022387           82 SSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDF------------ERGGGIGVVEMLF-RCNILALVG  146 (298)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~  146 (298)
                      ..|...|++++|+| +|++||+|+.+| ++||+++..........            .|...+..+.+.+ +...+++++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            45788999999999 999999999866 88999987654322210            1567888888887 666777777


Q ss_pred             CCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC-----eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceE
Q 022387          147 GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-----RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLC  220 (298)
Q Consensus       147 ~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-----~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~  220 (298)
                             .|+.|++||+.+++.+..+.+...+.++.+.+.     .++++. ++.|++||+.+++.+..+..|...+..+
T Consensus       120 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          120 -------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             -------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             -------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence                   679999999999999999998889999998753     455544 5899999999999999998888777777


Q ss_pred             EEEeCCCCe-EEEEecCCCceEEEEEcCCcc--eEee---------------cccccceeEEEECCCCCEEEEEeCCCCE
Q 022387          221 AVSQGVGSL-VLVCPGLQKGQVRVEHYASKR--TKFI---------------MAHDSRIACFALTQDGQLLATSSTKGTL  282 (298)
Q Consensus       221 ~~s~~~d~~-~la~sGs~dg~v~i~~~~~~~--~~~~---------------~~H~~~V~~l~fspdg~~lAt~S~Dgt~  282 (298)
                      ++++++  . +++ +|+.||.|++|++....  ...+               ..|...|++++|+|+|++||+++.||. 
T Consensus       193 ~~~~~~--~~ll~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  268 (408)
T 4a11_B          193 SWSPRY--DYILA-TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-  268 (408)
T ss_dssp             EECSSC--TTEEE-EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             EECCCC--CcEEE-EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-
Confidence            776654  4 455 48999999999986542  2222               679999999999999999999999999 


Q ss_pred             EEEEECCCCcEEE
Q 022387          283 VRIFNTLDGTLLQ  295 (298)
Q Consensus       283 IrIWd~~tg~~l~  295 (298)
                      |+|||+.+++.+.
T Consensus       269 i~vwd~~~~~~~~  281 (408)
T 4a11_B          269 MRLWNSSNGENTL  281 (408)
T ss_dssp             EEEEETTTCCBCC
T ss_pred             EEEEECCCCccce
Confidence            9999999987643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=6.9e-25  Score=195.06  Aligned_cols=203  Identities=12%  Similarity=0.081  Sum_probs=158.8

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEc-CCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           83 SPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .|...|.+++|+|+++ +|++|+.++ +++|++ ...+........|...+..+.+.+ ++.+++++       .|+.|+
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~-------~d~~i~  125 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAAS-------WDGLIE  125 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEE-------TTSEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEc-------CCCeEE
Confidence            5667999999999999 999999765 889999 776542211100466788888888 78888777       679999


Q ss_pred             EEeCCC---------CcEEEEeecCCceEEEEEeCCeEEEEEC-CeEEEEEcCC-CeEE--EEEeccCCCcceEEEEeCC
Q 022387          160 IWDDHQ---------SRCIGELSFRSEVRSVKLRRDRIIVVLE-QKIFVYNFAD-LKLL--HQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       160 iWD~~~---------~~~~~~~~~~~~v~~v~~~~~~l~v~~~-~~I~iwd~~~-~~~i--~~~~~~~~~~~~~~~s~~~  226 (298)
                      +||+++         ++.+..+.+...|.++.|+++.++++.. +.|++||+++ ++..  .....+...+..+++  .+
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~--~~  203 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL--LP  203 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE--CS
T ss_pred             EEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE--CC
Confidence            999987         7766677777799999999998777764 7999999987 4432  222334444444444  45


Q ss_pred             -CCeEEEEecCCCceEEEEEcCCc-------ceEeeccccc---------ceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          227 -GSLVLVCPGLQKGQVRVEHYASK-------RTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       227 -d~~~la~sGs~dg~v~i~~~~~~-------~~~~~~~H~~---------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                       ++.++++ |+.||.|++|++...       ....+..|..         .|++++|+|+|++||+++.||. |+|||+.
T Consensus       204 ~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~  281 (342)
T 1yfq_A          204 KEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQ  281 (342)
T ss_dssp             GGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETT
T ss_pred             CCCCEEEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCc
Confidence             5577774 889999999998754       3457788865         9999999999999999999999 9999999


Q ss_pred             CCcEEEec
Q 022387          290 DGTLLQEG  297 (298)
Q Consensus       290 tg~~l~~~  297 (298)
                      ++++++++
T Consensus       282 ~~~~~~~~  289 (342)
T 1yfq_A          282 TRKKIKNF  289 (342)
T ss_dssp             TTEEEEEC
T ss_pred             cHhHhhhh
Confidence            99998775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=3.8e-25  Score=196.83  Aligned_cols=199  Identities=10%  Similarity=0.027  Sum_probs=149.1

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecC--CCEEEEEeCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (298)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d  155 (298)
                      ..|...|.+++|++  +|++||+|+.|+ ++|||+.+........+. |...+..+.+.++  +..+++++       .|
T Consensus        54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs-------~D  126 (316)
T 3bg1_A           54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS-------SD  126 (316)
T ss_dssp             ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEEC-------SS
T ss_pred             cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEc-------CC
Confidence            46788999999986  489999999755 899999876422222221 5677888888876  55666666       68


Q ss_pred             CeEEEEeCCCCcEE---EEee-cCCceEEEEEeCC-------------------eEEEEE-CCeEEEEEcCCC---eEEE
Q 022387          156 NKVMIWDDHQSRCI---GELS-FRSEVRSVKLRRD-------------------RIIVVL-EQKIFVYNFADL---KLLH  208 (298)
Q Consensus       156 ~~v~iWD~~~~~~~---~~~~-~~~~v~~v~~~~~-------------------~l~v~~-~~~I~iwd~~~~---~~i~  208 (298)
                      ++|++||++.+...   ..+. +...|.++.|+++                   .++++. +++|++||++..   +++.
T Consensus       127 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  206 (316)
T 3bg1_A          127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQ  206 (316)
T ss_dssp             SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEE
T ss_pred             CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceee
Confidence            99999999876322   1222 2346888888775                   344443 589999999754   5667


Q ss_pred             EEeccCCCcceEEEEeCC--CCeEEEEecCCCceEEEEEcCCc-----ceEeecccccceeEEEECCCCCEEEEEeCCCC
Q 022387          209 QIETIANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGT  281 (298)
Q Consensus       209 ~~~~~~~~~~~~~~s~~~--d~~~la~sGs~dg~v~i~~~~~~-----~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt  281 (298)
                      ++..|...+..++++++.  +..+|| +|+.||.|++|+....     ....+..|...|++++|+|+|++||+++.|++
T Consensus       207 ~l~~h~~~V~~v~~sp~~~~~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          207 KLEAHSDWVRDVAWAPSIGLPTSTIA-SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             CCBCCSSCEEEEECCCCSSCSCCEEE-EEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             ecccCCCceEEEEecCCCCCCCceEE-EEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            778888777777776653  236677 5999999999998752     12356789999999999999999999999999


Q ss_pred             EEEEEECC
Q 022387          282 LVRIFNTL  289 (298)
Q Consensus       282 ~IrIWd~~  289 (298)
                       |+||+..
T Consensus       286 -v~lw~~~  292 (316)
T 3bg1_A          286 -VTLWKES  292 (316)
T ss_dssp             -EEEEEEC
T ss_pred             -EEEEEEC
Confidence             9999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=2.9e-24  Score=210.56  Aligned_cols=203  Identities=13%  Similarity=0.170  Sum_probs=163.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|||++|++|+.|+ |+|||+.+......... |...+..+.+++++..+++++       .|++|+|
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s-------~D~~i~i  498 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSAS-------RDRTIKL  498 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEE-------TTSCEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEe-------CCCEEEE
Confidence            56788999999999999999999865 88999998876655543 678899999999999888888       7899999


Q ss_pred             EeCCCCcEEEEe----ecCCceEEEEEeCCe----EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          161 WDDHQSRCIGEL----SFRSEVRSVKLRRDR----IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       161 WD~~~~~~~~~~----~~~~~v~~v~~~~~~----l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      ||..........    .+...|.++.|+++.    ++++. +++|++||+++.+++.++..|...+..++++++  +.+|
T Consensus       499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd--g~~l  576 (694)
T 3dm0_A          499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD--GSLC  576 (694)
T ss_dssp             ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT--SSEE
T ss_pred             EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC--CCEE
Confidence            998765443322    133469999998753    44444 589999999999999999988887777776654  5788


Q ss_pred             EEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      + +|+.||.|++||+..........+...|++++|+|++.+|++++ |+. |+|||++++++++++
T Consensus       577 ~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          577 A-SGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDL  639 (694)
T ss_dssp             E-EEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEE
T ss_pred             E-EEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhh
Confidence            8 59999999999998766543334567899999999999998876 666 999999999887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=8.9e-25  Score=195.00  Aligned_cols=202  Identities=11%  Similarity=0.106  Sum_probs=152.6

Q ss_pred             cCCCCCCeEEEE------EcCCCCEEEEEcCCe-EEEEEcCCCc-eEEEEeeecCC----ceEEEE----EecCCCEEEE
Q 022387           81 SSSPPPTLLHIS------FNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGG----GIGVVE----MLFRCNILAL  144 (298)
Q Consensus        81 ~~~~~~~V~~v~------fs~dg~~lasgs~~g-i~vw~~~~~~-~~~~~~~~~~~----~~~~~~----~~~~~~~~~~  144 (298)
                      ...|...|.+++      |+|++++|++|+.++ +++|++...+ ....... +.+    .+..+.    +.+++..+++
T Consensus       107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~  185 (357)
T 3i2n_A          107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCA  185 (357)
T ss_dssp             ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred             EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEE
Confidence            356888999995      578999999999865 8899998875 3333332 122    455555    3456777777


Q ss_pred             EeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeC-----CeEEEEE-CCeEEEEEcCCCeEEEEEe-----cc
Q 022387          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-----DRIIVVL-EQKIFVYNFADLKLLHQIE-----TI  213 (298)
Q Consensus       145 ~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-----~~l~v~~-~~~I~iwd~~~~~~i~~~~-----~~  213 (298)
                      ++       .|+.|++||+++++......+...|.++.|++     +.++++. ++.|++||+++.+.+..+.     .|
T Consensus       186 ~~-------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          186 GY-------DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             EE-------TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             Ec-------cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence            76       67999999999999887777888999999986     4455555 5899999998766655554     67


Q ss_pred             CCCcceEEEEeCCCCe-EEEEecCCCceEEEEEcCCc--------------------ceEeecccccceeEEEECCCCCE
Q 022387          214 ANPKGLCAVSQGVGSL-VLVCPGLQKGQVRVEHYASK--------------------RTKFIMAHDSRIACFALTQDGQL  272 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~-~la~sGs~dg~v~i~~~~~~--------------------~~~~~~~H~~~V~~l~fspdg~~  272 (298)
                      ...+..++++++  +. +++ +|+.||.|++|++...                    .+..+.+|...|++++|+|+|++
T Consensus       259 ~~~v~~~~~~~~--~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          259 KSTVWQVRHLPQ--NRELFL-TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             SSCEEEEEEETT--EEEEEE-EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             cCCEEEEEECCC--CCcEEE-EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence            666666666654  46 555 5999999999998642                    34578899999999999999999


Q ss_pred             EE-EEeCCCCEEEEEECCCCcEE
Q 022387          273 LA-TSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       273 lA-t~S~Dgt~IrIWd~~tg~~l  294 (298)
                      || |++.||. |+|||+.+.+++
T Consensus       336 l~~s~~~d~~-i~iw~~~~~~~i  357 (357)
T 3i2n_A          336 LCVCSSFDQT-VRVLIVTKLNKI  357 (357)
T ss_dssp             EEEEEETTSE-EEEEEECC----
T ss_pred             EEEEecCCCc-EEEEECCCcccC
Confidence            98 8999999 999999987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.8e-24  Score=196.46  Aligned_cols=204  Identities=15%  Similarity=0.162  Sum_probs=161.3

Q ss_pred             CCCCCCeEEEEEcCC----C---CEEEEEcCCe-EEEEEcCCCce-----EEEEeeec-----CCceEEEEEe----cCC
Q 022387           82 SSPPPTLLHISFNQD----H---GCFAAGTDHG-FRIYNCDPFRE-----IFRRDFER-----GGGIGVVEML----FRC  139 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d----g---~~lasgs~~g-i~vw~~~~~~~-----~~~~~~~~-----~~~~~~~~~~----~~~  139 (298)
                      ..|...|++++|+|+    |   ++|++|+.++ +++|++.+.+.     ...... |     ...+..+.+.    +++
T Consensus        59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL-LDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC-SCTTGGGSCEEEEEEECCC----
T ss_pred             ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecc-cccccCCCcEEEEEEeeccCCCC
Confidence            367779999999999    9   9999998755 88999987664     444433 4     3778888998    888


Q ss_pred             CE-EEEEeCCCCCCCCCCeEEEEeCCC------CcEEE-----Eee--------cCCceEEEEEeCCeEEE-EE-CCeEE
Q 022387          140 NI-LALVGGGPDPQYPLNKVMIWDDHQ------SRCIG-----ELS--------FRSEVRSVKLRRDRIIV-VL-EQKIF  197 (298)
Q Consensus       140 ~~-~~~~~~~~~~~~~d~~v~iWD~~~------~~~~~-----~~~--------~~~~v~~v~~~~~~l~v-~~-~~~I~  197 (298)
                      .. +++++       .|+.|++||+++      ++.+.     .+.        +...|.++.|+++.+++ +. ++.|+
T Consensus       138 ~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~  210 (397)
T 1sq9_A          138 SHRLVATD-------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ  210 (397)
T ss_dssp             CEEEEEEE-------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEE
T ss_pred             ceEEEEEe-------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEE
Confidence            88 77777       679999999988      55544     553        34579999999875333 33 48999


Q ss_pred             EEEcCCCeEEEEEec---c---CCCcceEEEEeCCCCeEEEEecCCC---ceEEEEEcCCcc-eEeecc-----------
Q 022387          198 VYNFADLKLLHQIET---I---ANPKGLCAVSQGVGSLVLVCPGLQK---GQVRVEHYASKR-TKFIMA-----------  256 (298)
Q Consensus       198 iwd~~~~~~i~~~~~---~---~~~~~~~~~s~~~d~~~la~sGs~d---g~v~i~~~~~~~-~~~~~~-----------  256 (298)
                      +||+++.+.+..+..   |   ...+..++++++  +.+|++ |+.|   |.|++|++.... +..+.+           
T Consensus       211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~--~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ--GSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEETTTTEEEEEEECCC---CCCCCEEEEEECSS--TTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             EEECCCCceeEEEeccccccccCCccceEEECCC--CCEEEE-EecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence            999999999999998   7   666666666554  577774 8888   999999987654 457887           


Q ss_pred             --cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          257 --HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       257 --H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                        |...|++++|+|++++||+++.||+ |+|||+++++++.++
T Consensus       288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~  329 (397)
T 1sq9_A          288 FAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTL  329 (397)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEE
Confidence              9999999999999999999999999 999999999988765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-24  Score=198.02  Aligned_cols=204  Identities=14%  Similarity=0.175  Sum_probs=158.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC----CceEEEEeeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCC
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP----FREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLN  156 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~  156 (298)
                      .|...|++++|+|++++||+|+.++ ++||++..    .+....... |...+..+.+.++ +..+++++       .|+
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-------~dg  136 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGG-------NNG  136 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEEC-------SSS
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEc-------CCC
Confidence            4567899999999999999998865 88999987    223333332 6778888999887 77777766       679


Q ss_pred             eEEEEeCCCCc------EEEEe----ecCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEecc------CCC
Q 022387          157 KVMIWDDHQSR------CIGEL----SFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETI------ANP  216 (298)
Q Consensus       157 ~v~iWD~~~~~------~~~~~----~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~------~~~  216 (298)
                      +|++||+.+++      ....+    .+...|.++.|+++   .++++. ++.|++||+++.+.+.++..+      ...
T Consensus       137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCC
T ss_pred             eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCc
Confidence            99999999876      33222    34468999999875   344433 589999999999999888876      445


Q ss_pred             cceEEEEeCCCCeEEEEecCCCc---eEEEEEcCCc--ceEeec-ccccceeEEEECC-CCCEEEEEeCCCCEEEEEECC
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKG---QVRVEHYASK--RTKFIM-AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg---~v~i~~~~~~--~~~~~~-~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +..+++++++. .+++ +|+.||   .|++|++...  ....+. +|...|++++|+| ++++||+++.||+ |+|||++
T Consensus       217 v~~~~~~~~~~-~~l~-~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~  293 (416)
T 2pm9_A          217 LSVVEWHPKNS-TRVA-TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPE  293 (416)
T ss_dssp             EEEEEECSSCT-TEEE-EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSS
T ss_pred             eEEEEECCCCC-CEEE-EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCC
Confidence            55555555432 3555 488888   9999999864  455777 8999999999999 9999999999999 9999999


Q ss_pred             CCcEEEec
Q 022387          290 DGTLLQEG  297 (298)
Q Consensus       290 tg~~l~~~  297 (298)
                      ++++++++
T Consensus       294 ~~~~~~~~  301 (416)
T 2pm9_A          294 SAEQLSQF  301 (416)
T ss_dssp             SCCEEEEE
T ss_pred             CCccceee
Confidence            99988765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4e-24  Score=194.76  Aligned_cols=200  Identities=16%  Similarity=0.257  Sum_probs=164.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      |...|++++|+|+|++|++|+.++ ++||+ ...+....... |...+..+.+.+++..+++++       .|+.|++||
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd  177 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIISMD-------VENVTILWN  177 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEEEE-------TTCCEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEEEe-------cCCeEEEEE
Confidence            567999999999999999999866 88999 44444444433 677889999999998888887       679999999


Q ss_pred             CCCCcEEEEeecCC-c---------------eEEEEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe
Q 022387          163 DHQSRCIGELSFRS-E---------------VRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       163 ~~~~~~~~~~~~~~-~---------------v~~v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                      +.+++.+..+..+. .               +.++.|+++..+++.  ++.|++||+.+.+.+..+..|...+..+++++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence            99999888777654 2               788888876555544  48999999999998888888887777777776


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++  .+|++ |+.||.|++|+..... ...+..|...|.+++|+|++ +|++++.|+. |+|||+++++++.++
T Consensus       258 ~~--~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          258 TN--KLLLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALS  326 (425)
T ss_dssp             TT--TEEEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             CC--CEEEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEec
Confidence            54  67774 8999999999988754 55788899999999999999 9999999999 999999999887654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=1.8e-23  Score=184.87  Aligned_cols=194  Identities=12%  Similarity=0.120  Sum_probs=161.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|+|++++|++|+.++ +++|++.+.+....... |...+..+.+.+++..+++++       .|+.|++
T Consensus       138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-------~dg~i~~  209 (337)
T 1gxr_A          138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGG-------LDNTVRS  209 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEe-------cCCcEEE
Confidence            45677899999999999999998855 88999998876655543 577888899998888888887       6799999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      ||+++++.+..+.+...+.++.|+++  .++++. ++.|++||+.+.+.. .+..|...+..+++++  ++.++++ ++.
T Consensus       210 ~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~-~~~  285 (337)
T 1gxr_A          210 WDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY--CGKWFVS-TGK  285 (337)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT--TSSEEEE-EET
T ss_pred             EECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC--CCCEEEE-ecC
Confidence            99999999988888889999999875  455554 589999999887754 5566666655555554  5577874 889


Q ss_pred             CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       238 dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ||.|++|+...........|...|++++|+|++++|++++.||. |+|||+
T Consensus       286 dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~  335 (337)
T 1gxr_A          286 DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVYEV  335 (337)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSC-EEEEEE
T ss_pred             CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCe-EEEEEE
Confidence            99999999988776666679999999999999999999999999 999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=1.3e-23  Score=208.04  Aligned_cols=206  Identities=11%  Similarity=0.085  Sum_probs=172.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|||++||+|+.++ ++||++.+.+....... |.+.+..+.+++++..+++++       .|++|++
T Consensus        52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-------~dg~i~v  123 (814)
T 3mkq_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS-------DDLTVKL  123 (814)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE-------TTSEEEE
T ss_pred             ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEc-------CCCEEEE
Confidence            35677999999999999999999866 88999999887666654 678899999999999888877       6899999


Q ss_pred             EeCCCC-cEEEEeec-CCceEEEEEeC-C--eEEEEE-CCeEEEEEcCCCeEEEEEeccC-CCcceEEEEeCCCCeEEEE
Q 022387          161 WDDHQS-RCIGELSF-RSEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~-~~~~~~~~-~~~v~~v~~~~-~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~-~~~~~~~~s~~~d~~~la~  233 (298)
                      ||+.++ .....+.. ...|.++.|++ +  .++++. ++.|++||+.+.+....+..+. ..+..+++++.+++.++++
T Consensus       124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence            999987 55555554 45899999987 3  344444 5899999998888777777654 6677788888667788884


Q ss_pred             ecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       |+.||.|++|+..... +..+.+|...|++++|+|+|++|++++.||+ |+|||+.+++++.++
T Consensus       204 -~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          204 -ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTL  266 (814)
T ss_dssp             -ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEE
T ss_pred             -EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEe
Confidence             8999999999988765 4578899999999999999999999999999 999999999887764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.4e-23  Score=188.46  Aligned_cols=203  Identities=11%  Similarity=0.020  Sum_probs=154.4

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecC--CCEEEEEeCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d--g~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d  155 (298)
                      ..|...|++++|+++  +++|++|+.++ ++||++.+.+......+. |...+..+.+.++  +..+++++       .|
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~d  124 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-------SD  124 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec-------CC
Confidence            457779999999987  99999999866 889999988633233221 5778888888888  77888877       68


Q ss_pred             CeEEEEeCCCCcE--EEEe-ecCCceEEEEEeC---------------CeEEEEE-CCeEEEEEcCCCe----EEEEEec
Q 022387          156 NKVMIWDDHQSRC--IGEL-SFRSEVRSVKLRR---------------DRIIVVL-EQKIFVYNFADLK----LLHQIET  212 (298)
Q Consensus       156 ~~v~iWD~~~~~~--~~~~-~~~~~v~~v~~~~---------------~~l~v~~-~~~I~iwd~~~~~----~i~~~~~  212 (298)
                      +.|++||++++..  ...+ .+...|.++.|++               ..++++. ++.|++||+++.+    ++..+..
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            9999999988733  2233 3456899999987               2444444 5899999996543    5566677


Q ss_pred             cCCCcceEEEEeCCC-CeEEEEecCCCceEEEEEcCCcc----eE--eecccccceeEEEECCCCCEEEEEeCCCCEEEE
Q 022387          213 IANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR----TK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (298)
Q Consensus       213 ~~~~~~~~~~s~~~d-~~~la~sGs~dg~v~i~~~~~~~----~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrI  285 (298)
                      |..++..++++++.. +.+|+ +|+.||.|++|++....    ..  ....|...|++++|+|+|++||+++.||. |+|
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~i  282 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTL  282 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEE-EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS-EEE
T ss_pred             ccCcEeEEEECCCCCCCCeEE-EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc-EEE
Confidence            777766666665411 47777 48999999999998752    22  33458899999999999999999999999 999


Q ss_pred             EECCCCcE
Q 022387          286 FNTLDGTL  293 (298)
Q Consensus       286 Wd~~tg~~  293 (298)
                      ||+..+..
T Consensus       283 w~~~~~~~  290 (379)
T 3jrp_A          283 WKENLEGK  290 (379)
T ss_dssp             EEEEETTE
T ss_pred             EeCCCCCc
Confidence            99985543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=2.1e-23  Score=191.17  Aligned_cols=201  Identities=18%  Similarity=0.198  Sum_probs=155.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|.+++|  ++++|++|+.++ +++|++.... ....... |.+.+..+.+.+++..+++++       .|+.|+
T Consensus       173 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~-------~d~~v~  242 (401)
T 4aez_A          173 AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLASGG-------NDNVVQ  242 (401)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEEEEe-------CCCeEE
Confidence            467889999999  567999999865 7899998543 3333332 678899999999888888887       689999


Q ss_pred             EEeCCCCcEEEEee-cCCceEEEEEeCC--eEEE-EE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          160 IWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIV-VL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       160 iWD~~~~~~~~~~~-~~~~v~~v~~~~~--~l~v-~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      +||+++++.+..+. +...|.++.|+++  .+++ +.   ++.|++||+.+++++..+..+ ..+..++++  +++.+++
T Consensus       243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s--~~~~~l~  319 (401)
T 4aez_A          243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWS--PHSKEIM  319 (401)
T ss_dssp             EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SCEEEEEEC--SSSSEEE
T ss_pred             EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-CcEEEEEEC--CCCCeEE
Confidence            99999998887775 4468999999873  3444 33   689999999999998888643 344444554  4556666


Q ss_pred             Ee-cCCCceEEEEEcCCcce---EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          233 CP-GLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       233 ~s-Gs~dg~v~i~~~~~~~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ++ |+.||.|++|++.....   ..+.+|...|++++|+|+|++||+++.||+ |+|||+.+++++.+
T Consensus       320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~-i~iw~~~~~~~~~~  386 (401)
T 4aez_A          320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN-LKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE-EEEEECCC------
T ss_pred             EEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCCCccccc
Confidence            43 77899999999987543   357799999999999999999999999999 99999999987754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=3.2e-23  Score=189.75  Aligned_cols=200  Identities=14%  Similarity=0.189  Sum_probs=158.4

Q ss_pred             cCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCC-------ceEEEEeeecCCceEEEEEecCC-CEEEEEeCCCC
Q 022387           81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRC-NILALVGGGPD  150 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  150 (298)
                      ...|...|++++|+| ++++||+|+.++ |+||++.+.       +.+..... |...+..+.+.+++ +.+++++    
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~----  151 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAG----  151 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEE----
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEc----
Confidence            356788999999999 999999999866 889999876       33333333 67889999998887 5777777    


Q ss_pred             CCCCCCeEEEEeCCCCcEEEEe--e-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEE-eccCCC-cceEEE
Q 022387          151 PQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI-ETIANP-KGLCAV  222 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~--~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~-~~~~~~-~~~~~~  222 (298)
                         .|++|++||+++++.+..+  . +...|.++.|+++  .++++. ++.|++||+++++.+.++ ..|... +..+.+
T Consensus       152 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          152 ---CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             ---TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             ---CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence               6799999999999998888  3 4568999999864  455554 589999999999999988 566544 445555


Q ss_pred             EeCCCCeEEEEec---CCCceEEEEEcCCcc--eEee-cccccceeEEEECCCCCEEEE-EeCCCCEEEEEECCCCc
Q 022387          223 SQGVGSLVLVCPG---LQKGQVRVEHYASKR--TKFI-MAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       223 s~~~d~~~la~sG---s~dg~v~i~~~~~~~--~~~~-~~H~~~V~~l~fspdg~~lAt-~S~Dgt~IrIWd~~tg~  292 (298)
                      +  +++.++++ |   +.||.|++||.....  .... ..|...|.+++|+|+|++|++ |+.||+ |+|||+.+++
T Consensus       229 ~--~~~~~l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~  301 (402)
T 2aq5_A          229 V--SEGKILTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEA  301 (402)
T ss_dssp             C--STTEEEEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSST
T ss_pred             c--CCCcEEEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCC
Confidence            5  45688885 7   799999999997643  2232 357788999999999999975 557999 9999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=3.2e-24  Score=197.75  Aligned_cols=201  Identities=12%  Similarity=0.177  Sum_probs=147.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce-----------EEEEeeecC------------CceEEEEEecCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-----------IFRRDFERG------------GGIGVVEMLFRC  139 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~-----------~~~~~~~~~------------~~~~~~~~~~~~  139 (298)
                      +...|++++|+|+|++||+|+.+| |+||++.+.+.           ...... |.            +.+..+.+.++.
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCC
Confidence            456899999999999999999866 88999987652           222222 44            568888998877


Q ss_pred             --CEEEEEeCCCCCCCCCCeEEEEeCCCCcEE---------------------------------------EEe--ecCC
Q 022387          140 --NILALVGGGPDPQYPLNKVMIWDDHQSRCI---------------------------------------GEL--SFRS  176 (298)
Q Consensus       140 --~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~---------------------------------------~~~--~~~~  176 (298)
                        ..+++++       .|++|++||+.+++..                                       ..+  .+..
T Consensus       106 ~~~~l~s~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B          106 NAAQFLLST-------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             SSSEEEEEE-------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             CcceEEEeC-------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence              6677776       6899999998764432                                       111  2445


Q ss_pred             ceEEEEEeCC--eEEEEECCeEEEEEcC-CCeEEEEE-------eccCCCcceEEEEeCCCC-eEEEEecCCCceEEEEE
Q 022387          177 EVRSVKLRRD--RIIVVLEQKIFVYNFA-DLKLLHQI-------ETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEH  245 (298)
Q Consensus       177 ~v~~v~~~~~--~l~v~~~~~I~iwd~~-~~~~i~~~-------~~~~~~~~~~~~s~~~d~-~~la~sGs~dg~v~i~~  245 (298)
                      .|.++.|+++  .++++.++.|++||+. ..+.+..+       ..|...+..++++  +++ .+|+ +|+.||.|++||
T Consensus       179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~-s~~~dg~i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH--PNSCNTFV-YSSSKGTIRLCD  255 (447)
T ss_dssp             CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC--SSCTTEEE-EEETTSCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC--CCCCcEEE-EEeCCCeEEEEE
Confidence            8999999874  5556656899999998 44444432       3455555555554  454 5666 489999999999


Q ss_pred             cCCcc-----eEeeccccc------------ceeEEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEec
Q 022387          246 YASKR-----TKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEG  297 (298)
Q Consensus       246 ~~~~~-----~~~~~~H~~------------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t-g~~l~~~  297 (298)
                      +....     ...+..|..            .|++|+|+|+|++||+++. ++ |+|||+++ +++++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETY  323 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCE
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCcccccee
Confidence            98765     367888876            9999999999999999998 88 99999997 7766543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=4.1e-24  Score=190.99  Aligned_cols=193  Identities=7%  Similarity=0.036  Sum_probs=130.3

Q ss_pred             CCCCCCeEEEEEcCC----CCEEEEEcC---------------------CeEEEEEcCC-CceEEEEeeecCCceEEEEE
Q 022387           82 SSPPPTLLHISFNQD----HGCFAAGTD---------------------HGFRIYNCDP-FREIFRRDFERGGGIGVVEM  135 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d----g~~lasgs~---------------------~gi~vw~~~~-~~~~~~~~~~~~~~~~~~~~  135 (298)
                      ..+...|++++|+||    +.++++|+.                     +.|++|++.+ ++.+..... |...+.++.+
T Consensus       108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~f  186 (356)
T 2w18_A          108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL-MPPEETILTF  186 (356)
T ss_dssp             SSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE-CCCSSCEEEE
T ss_pred             cccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc-CCCceeeEEe
Confidence            445568999999999    888887653                     2344555533 222222222 3444555555


Q ss_pred             ec---CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC----CceEEEEEeCCeEEEE---------------EC
Q 022387          136 LF---RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR----SEVRSVKLRRDRIIVV---------------LE  193 (298)
Q Consensus       136 ~~---~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~----~~v~~v~~~~~~l~v~---------------~~  193 (298)
                      ++   ++..++.++       .|++|||||+.+++++.++..+    ..+.+++|+++...++               .+
T Consensus       187 s~~~g~~~~LaSgS-------~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D  259 (356)
T 2w18_A          187 AEVQGMQEALLGTT-------IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV  259 (356)
T ss_dssp             EEEETSTTEEEEEE-------TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred             eccCCCCceEEEec-------CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence            55   344455555       6899999999999999998743    2466778888654431               13


Q ss_pred             CeEEEEEcCCCeEEEEEe-----ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeeccccccee-EEEE
Q 022387          194 QKIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA-CFAL  266 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~-----~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~-~l~f  266 (298)
                      ++|++||..+++.+..+.     +|...  .+..+.+  +.++| +|+.||+|+|||+.+++ +.++.+|...|. +++|
T Consensus       260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~--~lsg~~s--g~~lA-SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf  334 (356)
T 2w18_A          260 FQLIVINPKTTLSVGVMLYCLPPGQAGR--FLEGDVK--DHCAA-AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW  334 (356)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCTTCCCC--EEEEEEE--TTEEE-EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred             cEEEEEECCCCEEEEEEEeeccCCCcce--eEccccC--CCEEE-EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence            699999999999887663     22222  2333332  35666 59999999999999876 458889987654 6999


Q ss_pred             CCCCCEEEEEeCCCCEEEEEEC
Q 022387          267 TQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       267 spdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ||||++|||||.|++ |||||+
T Consensus       335 SPDG~~LaSGS~D~T-IklWd~  355 (356)
T 2w18_A          335 SGTDSHLLAGQKDGN-IFVYHY  355 (356)
T ss_dssp             CSSSSEEEEECTTSC-EEEEEE
T ss_pred             CCCCCEEEEEECCCc-EEEecC
Confidence            999999999999999 999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=2.9e-23  Score=190.23  Aligned_cols=203  Identities=12%  Similarity=0.144  Sum_probs=159.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|+|++|++|+.+| ++||++.+.+.+..... |...+..+.+  +++.+++++       .|+.|++
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~-------~dg~i~i  200 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSW--NRHVLSSGS-------RSGAIHH  200 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEE--ETTEEEEEE-------TTSEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEE--CCCEEEEEc-------CCCCEEE
Confidence            34678999999999999999999866 88999998877665543 5666666665  667777777       6799999


Q ss_pred             EeCCC-CcEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          161 WDDHQ-SRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       161 WD~~~-~~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ||++. +..+..+. +...|.++.|+++  .++++. ++.|++||+++.+.+.++..|...+..+++++++...+.+.+|
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            99984 55565655 4468999999875  455555 4899999999999999998888888888888765433333224


Q ss_pred             CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEe--CCCCEEEEEECCCCcEEE
Q 022387          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S--~Dgt~IrIWd~~tg~~l~  295 (298)
                      +.||.|++|+...........|...|++++|+|+|++|++++  .||. |+|||+.+++...
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~  341 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTK  341 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCcccee
Confidence            589999999998776553335778999999999999999954  8999 9999999976654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=1.2e-23  Score=186.57  Aligned_cols=201  Identities=14%  Similarity=0.135  Sum_probs=149.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..+...+..+.+++++.+|++|+.++ +++|+.............|...+..+.+..+....++++++     .|++|++
T Consensus       125 ~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~-----~d~~i~i  199 (340)
T 4aow_A          125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG-----WDKLVKV  199 (340)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE-----TTSCEEE
T ss_pred             cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc-----CCCEEEE
Confidence            45556889999999999999999866 78999877654433322256677888887665433222222     5799999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ||+++++.+..+..+ ..|.+++|+++  .++++. ++.|++||+++.+.+..+..+. .+..++++  +++.+++  ++
T Consensus       200 ~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~--~~~~~~~--~~  274 (340)
T 4aow_A          200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFS--PNRYWLC--AA  274 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEEEEC--SSSSEEE--EE
T ss_pred             EECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-eEEeeecC--CCCceee--cc
Confidence            999999988887654 58999999875  444444 5899999999999998887653 34444554  4456665  57


Q ss_pred             CCceEEEEEcCCcceE----------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          237 QKGQVRVEHYASKRTK----------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~----------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .||.|++|++......          ...+|...|++|+|+|||++|||||.||+ |||||+++|++
T Consensus       275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~-v~iW~~~tGtr  340 (340)
T 4aow_A          275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL-VRVWQVTIGTR  340 (340)
T ss_dssp             ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC-EEEEEEEC---
T ss_pred             CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEeCCCcCC
Confidence            8999999998765321          34578999999999999999999999999 99999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=2e-23  Score=191.08  Aligned_cols=197  Identities=11%  Similarity=0.093  Sum_probs=157.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      .+....|+++|++||+|+.++ ++||++.+.+....... |.+.+..+.+.+++..+++++       .|++|++||+++
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s-------~d~~i~iwd~~~  170 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSS-------QDMQLKIWSVKD  170 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTT
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEe-------CCCeEEEEeCCC
Confidence            455557899999999999865 88999987766444322 688899999999998888887       689999999999


Q ss_pred             CcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccC---CCcceEEEE---------------
Q 022387          166 SRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIA---NPKGLCAVS---------------  223 (298)
Q Consensus       166 ~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~---~~~~~~~~s---------------  223 (298)
                      ++.+..+.. ...|.++.|+++  .++++. ++.|++||+++++.+.++..+.   ..+..+++.               
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            988888774 468999999875  455554 5899999999999999987643   233333332               


Q ss_pred             ----eCCCCeEEEEecCCCceEEEEEcCCcce-E-eecccccceeEEEECCCCC-EEEEEeCCCCEEEEEECCCCcE
Q 022387          224 ----QGVGSLVLVCPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       224 ----~~~d~~~la~sGs~dg~v~i~~~~~~~~-~-~~~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                          +++++.++++ |+.||.|++||+..... . ....|...|++++|+|+++ +|++|+.||. |+|||++++++
T Consensus       251 ~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~  325 (420)
T 3vl1_A          251 NNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPEC  325 (420)
T ss_dssp             CTTCSSCTTEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTS
T ss_pred             cceEEcCCCCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcC
Confidence                3456788884 99999999999987653 3 3456899999999999998 9999999999 99999999854

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.1e-23  Score=191.29  Aligned_cols=202  Identities=12%  Similarity=0.233  Sum_probs=159.5

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc------eEEEEeeecCCceEEEEEecC----C---CEEEEEe
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR------EIFRRDFERGGGIGVVEMLFR----C---NILALVG  146 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~  146 (298)
                      ...|...|++++|+|  ++|++|+.++ ++||+++..+      ....... |...+..+.+.++    +   ..+++++
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEc
Confidence            357888999999999  7899998765 8899998876      4444443 6788888988887    7   7777777


Q ss_pred             CCCCCCCCCCeEEEEeCCCCcE-----EEEeecC------CceEEEEEe----CC--e-EEEEE-CCeEEEEEcCC----
Q 022387          147 GGPDPQYPLNKVMIWDDHQSRC-----IGELSFR------SEVRSVKLR----RD--R-IIVVL-EQKIFVYNFAD----  203 (298)
Q Consensus       147 ~~~~~~~~d~~v~iWD~~~~~~-----~~~~~~~------~~v~~v~~~----~~--~-l~v~~-~~~I~iwd~~~----  203 (298)
                             .|+.|++||+.+++.     +..+..+      ..|.++.|+    ++  . ++++. ++.|++||+.+    
T Consensus        89 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           89 -------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             -------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             -------CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence                   679999999998876     6666655      789999999    53  4 55554 58999999988    


Q ss_pred             --CeEEE-----EEec-------cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecc---c---cccee
Q 022387          204 --LKLLH-----QIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA---H---DSRIA  262 (298)
Q Consensus       204 --~~~i~-----~~~~-------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~---H---~~~V~  262 (298)
                        .+.+.     ++..       |...+..++++  +++ +++ +|+.||.|++|++.... +..+..   |   ...|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEE-EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEE-EEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence              66666     7754       45555555554  455 666 48999999999998654 457778   9   99999


Q ss_pred             EEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEEec
Q 022387          263 CFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       263 ~l~fspdg~~lAt~S~D---gt~IrIWd~~tg~~l~~~  297 (298)
                      +++|+|++++||+++.|   |. |+|||+++++++.++
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSL  274 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEE
T ss_pred             eEEECCCCCEEEEEecCCCCce-EEEEECCCCccccee
Confidence            99999999999999999   98 999999999988765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=2.8e-23  Score=188.43  Aligned_cols=194  Identities=19%  Similarity=0.221  Sum_probs=149.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+...|.+++|+|++++|++|+.++ +++||+. .+.+..... |...+..+.+.+++. .+++++       .|++|++
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-------~d~~i~i  231 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKL-HKAKVTHAEFNPRCDWLMATSS-------VDATVKL  231 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEEC-SSSCEEEEEECSSCTTEEEEEE-------TTSEEEE
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEecc-CCCcEEEEEECCCCCCEEEEEe-------CCCEEEE
Confidence            3447899999999999999999866 7899994 444444443 678899999988887 677776       6899999


Q ss_pred             EeCCC----CcEEEEeecCCceEEEEEeC-C--eEEEEE-CCeEEEEEcCCCeEEEEEeccCC-------Cc--------
Q 022387          161 WDDHQ----SRCIGELSFRSEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIETIAN-------PK--------  217 (298)
Q Consensus       161 WD~~~----~~~~~~~~~~~~v~~v~~~~-~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~-------~~--------  217 (298)
                      ||+++    +..+..+.+...|.++.|++ +  .++++. ++.|++||+++++.+.++..|..       ++        
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  311 (383)
T 3ei3_B          232 WDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY  311 (383)
T ss_dssp             EEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred             EeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCC
Confidence            99998    67777787778999999988 4  455554 58999999998887777775432       11        


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecc--cccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..+++...+++.+   +|+.||.|++|++.+.. +..+.+  |...+.+++|+|+|++||+|+ ||+ |+|||+++
T Consensus       312 ~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~-i~iw~~~~  382 (383)
T 3ei3_B          312 DLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN-ILIWNRED  382 (383)
T ss_dssp             SEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE-EEEEECC-
T ss_pred             CceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc-EEEEecCC
Confidence            1222333344444   47899999999997655 457776  567899999999999999998 998 99999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.6e-23  Score=179.14  Aligned_cols=201  Identities=13%  Similarity=0.094  Sum_probs=163.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|...|++++| +++++|++|+.+| ++||++.+.+....... |...+..+.+.+++..+++++       .|+.|+
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~dg~i~   84 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGG-------KDTMIN   84 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEE-------TTSCEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEec-------CCCeEE
Confidence            3578889999999 9999999999866 88999988776555544 688899999999999988888       679999


Q ss_pred             EEeCCCC---cEEEEee-cCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          160 IWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       160 iWD~~~~---~~~~~~~-~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +||+...   +.+..+. +...|.++.|+++.++++. ++.|++||  ..+.+..+..|...+..+++.+. ++.+++ +
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~-~  160 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-SENKFL-T  160 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-TTTEEE-E
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-CCCEEE-E
Confidence            9998764   4444554 4468999999888888876 58999999  67788888888888877777763 235666 4


Q ss_pred             cCCCceEEEEEcCCcceEeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          235 GLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+.||.|++|+. .+....+.. |...|++++|+|+++ |++++.||. |+|||++++++++++
T Consensus       161 ~~~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~  221 (313)
T 3odt_A          161 ASADKTIKLWQN-DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTY  221 (313)
T ss_dssp             EETTSCEEEEET-TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EECCCCEEEEec-CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhh
Confidence            899999999993 334556666 999999999999998 999999999 999999999988765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=2.6e-23  Score=188.62  Aligned_cols=201  Identities=11%  Similarity=0.126  Sum_probs=151.3

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCC---CEEEEEeCCCCCCCCCCe
Q 022387           83 SPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNK  157 (298)
Q Consensus        83 ~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~  157 (298)
                      .|...|.+++|+| ++.+|++|+.++ +++|++.+.+.......  ...+..+.+.+..   ..+++++       .++.
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  167 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVSTKHCLVAVGT-------RGPK  167 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCSSCCEEEEEE-------SSSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCCCCcEEEEEc-------CCCe
Confidence            4778999999999 778999998755 88999999887666653  6777777776643   3666666       6799


Q ss_pred             EEEEeCCCCcEEEEeec-CCceEEEEEeCCe---EEEEE-CCeEEEEEcCCCe-EEEEE---------------eccCCC
Q 022387          158 VMIWDDHQSRCIGELSF-RSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLK-LLHQI---------------ETIANP  216 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~-~~~v~~v~~~~~~---l~v~~-~~~I~iwd~~~~~-~i~~~---------------~~~~~~  216 (298)
                      |++||+++++.+..+.. ...|.++.|+++.   ++++. ++.|++||+++.+ .+..+               ..|...
T Consensus       168 v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             EEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             EEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence            99999999988877774 4689999998753   44444 5899999997655 44444               233334


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-----------------------------------------------
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------------------------------------  249 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-----------------------------------------------  249 (298)
                      +  .++.+++++.+|++ |+.||.|++|++...                                               
T Consensus       248 v--~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          248 V--NGLCFTSDGLHLLT-VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             E--EEEEECTTSSEEEE-EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             e--eEEEEcCCCCEEEE-ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence            4  44445556688884 889999999997642                                               


Q ss_pred             -ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          250 -RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       250 -~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                       .+..+.+|...|++++|+|+|++||+++.||. |+|||+.+++.+.+
T Consensus       325 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~~~~~~~~~  371 (408)
T 4a11_B          325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN-ILAWVPSLYEPVPD  371 (408)
T ss_dssp             CEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEEECC------
T ss_pred             cceeeeccCCCeEEEEEEcCCCCEEEEECCCCe-EEEEeCCCCCccCC
Confidence             23356789999999999999999999999999 99999999987653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=8.6e-23  Score=189.81  Aligned_cols=200  Identities=11%  Similarity=0.169  Sum_probs=161.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|.+++|++++ +|++|+.++ +++||+++.+....... |.+.+..+.+.+  ++..+++++       .|++|
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s-------~d~~i  229 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGS-------RDNTL  229 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEEEEE-------TTSCE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEEEEc-------CCCcE
Confidence            4688899999999998 888888755 89999999877655543 678888888875  445566666       67999


Q ss_pred             EEEeCCCCcEE-----------------------EEee-cCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEecc
Q 022387          159 MIWDDHQSRCI-----------------------GELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETI  213 (298)
Q Consensus       159 ~iWD~~~~~~~-----------------------~~~~-~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~  213 (298)
                      ++||+.++...                       ..+. +...|.++..+.+.++++. ++.|++||+.+++++.++..|
T Consensus       230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  309 (464)
T 3v7d_B          230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH  309 (464)
T ss_dssp             EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            99999876532                       2222 3347888888888888877 589999999999999999988


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ...+..++++++  +.+++ +|+.||.|++|+..+.. +.++.+|...|++++|+  +++|++++.||+ |+|||+.+++
T Consensus       310 ~~~v~~~~~~~~--~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~~  383 (464)
T 3v7d_B          310 TDRIYSTIYDHE--RKRCI-SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYS  383 (464)
T ss_dssp             SSCEEEEEEETT--TTEEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCC
T ss_pred             CCCEEEEEEcCC--CCEEE-EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCCc
Confidence            877777777665  47777 49999999999997654 55899999999999997  589999999999 9999999987


Q ss_pred             EEEe
Q 022387          293 LLQE  296 (298)
Q Consensus       293 ~l~~  296 (298)
                      ...+
T Consensus       384 ~~~~  387 (464)
T 3v7d_B          384 RKFS  387 (464)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            7654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.4e-24  Score=204.04  Aligned_cols=196  Identities=10%  Similarity=0.046  Sum_probs=147.5

Q ss_pred             CCCCCeEEEEEcCC------CCEEEEEcCCe-EEEEEcCCCceE-----------EEEeeecCCceEEEEEecCCCEEEE
Q 022387           83 SPPPTLLHISFNQD------HGCFAAGTDHG-FRIYNCDPFREI-----------FRRDFERGGGIGVVEMLFRCNILAL  144 (298)
Q Consensus        83 ~~~~~V~~v~fs~d------g~~lasgs~~g-i~vw~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  144 (298)
                      .|...|.+|+|+|+      +.+||+|+.|+ |+||++......           ..... |...+..+.+... ..+++
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~-~~las  282 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSP-TTVVC  282 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSS-SEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCC-CeEEE
Confidence            34568999999997      57999999865 899999765321           12222 5667777777654 45666


Q ss_pred             EeCCCCCCCCCCeEEEEeCCCCc-EEEEeec-CCceEEE--EEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCC-
Q 022387          145 VGGGPDPQYPLNKVMIWDDHQSR-CIGELSF-RSEVRSV--KLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIAN-  215 (298)
Q Consensus       145 ~~~~~~~~~~d~~v~iWD~~~~~-~~~~~~~-~~~v~~v--~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~-  215 (298)
                      ++       .|++|++||++++. ....+.. ...|.++  .++++   .++.+. |++|+|||+++++++.++..|.. 
T Consensus       283 gs-------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          283 GF-------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             EE-------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             Ee-------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            55       68999999999764 3444554 4689998  45654   344444 58999999998888777776653 


Q ss_pred             -CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       216 -~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                       .+..++++++  +..++ +|+.|+.|++|+..... +.++.+|.+.|++|+|||+|++||+||.||+ |||||+..+
T Consensus       356 ~~v~~v~fsp~--~~~l~-s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~  429 (524)
T 2j04_B          356 SNLVPVVYCPQ--IYSYI-YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARR  429 (524)
T ss_dssp             CSCCCEEEETT--TTEEE-EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSS
T ss_pred             CcccceEeCCC--cCeEE-EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHh
Confidence             2455666664  46676 48889999999988755 4678899999999999999999999999999 999997643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=2.5e-24  Score=192.48  Aligned_cols=196  Identities=13%  Similarity=0.133  Sum_probs=158.9

Q ss_pred             CCCCeEEEEEcCC----CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387           84 PPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        84 ~~~~V~~v~fs~d----g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~  157 (298)
                      |...|++++|+|+    |.+|++|+.++ ++||++.+.+.+..... |...+..+.+.+ ++..+++++       .|++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~-------~dg~  139 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVS-------KDHA  139 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEE-------TTSC
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEe-------CCCe
Confidence            5568999999999    67999999866 88999998877655543 678889999988 788888877       6899


Q ss_pred             EEEEeCCCCcEEEEe----ecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEec------------------
Q 022387          158 VMIWDDHQSRCIGEL----SFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIET------------------  212 (298)
Q Consensus       158 v~iWD~~~~~~~~~~----~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~------------------  212 (298)
                      |++||+++++.+..+    .+...|.++.|+++  .++++. ++.|++||+++.+.+..+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999988887    35568999999875  455554 58999999987765443332                  


Q ss_pred             ----------cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc---------------eEeecccccceeEEEEC
Q 022387          213 ----------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------------TKFIMAHDSRIACFALT  267 (298)
Q Consensus       213 ----------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~---------------~~~~~~H~~~V~~l~fs  267 (298)
                                |...+..++++  +  .+++ +|+.||.|++|+.....               +..+..|...|++++|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~--~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--G--DLIL-SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--T--TEEE-EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred             ccCccccccCCcceEEEEEEc--C--CEEE-EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence                      66777777776  3  4666 48999999999986532               44778899999999999


Q ss_pred             CC--CCEEEEEeCCCCEEEEEECCCCcE
Q 022387          268 QD--GQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       268 pd--g~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      |+  |++||+|+.||. |+|||+.++++
T Consensus       295 ~~~~~~~l~~~~~dg~-i~vwd~~~~~~  321 (366)
T 3k26_A          295 MDFWQKMLALGNQVGK-LYVWDLEVEDP  321 (366)
T ss_dssp             ECTTSSEEEEECTTSC-EEEEECCSSSG
T ss_pred             CCCCCcEEEEEecCCc-EEEEECCCCCC
Confidence            99  999999999999 99999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=194.13  Aligned_cols=205  Identities=13%  Similarity=0.161  Sum_probs=152.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC---CCceEEEEee------e-----cCCceEEEEEe--cCCCEEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD---PFREIFRRDF------E-----RGGGIGVVEML--FRCNILALV  145 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~---~~~~~~~~~~------~-----~~~~~~~~~~~--~~~~~~~~~  145 (298)
                      .|...|++++|+|++++|++|+.++ ++||+++   ..+.......      .     +...+..+.+.  .++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            5778999999999999999999866 8899985   3333222111      0     12223333322  345566666


Q ss_pred             eCCCCCCCCCCeEEEEeCCCCcEEEEeec---CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEe-ccCCCcc
Q 022387          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSF---RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIE-TIANPKG  218 (298)
Q Consensus       146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~---~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~-~~~~~~~  218 (298)
                      +       .|++|++||+++++.+..+..   ...|.+++|+++  .++++. ++.|++||+++++++.++. .|..++.
T Consensus       189 ~-------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          189 T-------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             E-------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             e-------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence            6       679999999999999888875   468999999875  455554 5799999999999999886 4555555


Q ss_pred             eEEEEeC--CCCeEEEEecCCCceEEEEEcCCcce-Eeec------------------------c--cccceeEEEECCC
Q 022387          219 LCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRT-KFIM------------------------A--HDSRIACFALTQD  269 (298)
Q Consensus       219 ~~~~s~~--~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~------------------------~--H~~~V~~l~fspd  269 (298)
                      .+++++.  +++.+|+ +|+.||.|++||+..... ..+.                        +  |...|++|+|+ +
T Consensus       262 ~~~~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~  339 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVV-GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N  339 (437)
T ss_dssp             EEEECTTTCTTEEEEE-EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred             EEEeccccCCCccEEE-EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence            5655443  5667787 599999999999986542 2333                        2  67789999999 8


Q ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          270 GQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +++|++|+.||+ |+|||+.++++++.+
T Consensus       340 ~~~l~s~~~d~~-i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          340 DKILLTDEATSS-IVMFSLNELSSSKAV  366 (437)
T ss_dssp             TEEEEEEGGGTE-EEEEETTCGGGCEEE
T ss_pred             ceEEEecCCCCe-EEEEECCCcccceEE
Confidence            899999999999 999999999876553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.92  E-value=4.7e-23  Score=204.08  Aligned_cols=205  Identities=11%  Similarity=0.127  Sum_probs=169.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|||.+||+|+.+| ++||++.+++....... |.+.+..+.+++++..+++++       .|+.|++
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-------~dg~i~v   81 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGS-------DDFRIRV   81 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEE-------TTSEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEe-------CCCeEEE
Confidence            46778999999999999999999865 88999999877666554 688899999999999999888       6799999


Q ss_pred             EeCCCCcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          161 WDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ||+.+++.+..+.. ...|.++.|+++  .++++. ++.|++||+.+. .....+..|..++..+++++. ++..++ +|
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~-~~  159 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK-DPSTFA-SG  159 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT-EEEEEE-EE
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC-CCCEEE-EE
Confidence            99999999888874 468999999976  355555 489999999876 777788888777777777762 336676 48


Q ss_pred             CCCceEEEEEcCCcc-eEeecc-cccceeEEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~-~~~~~~-H~~~V~~l~fsp--dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.||.|++|+..... ...+.. |...|++++|+|  ++.+|++++.||+ |+|||+.+++++.++
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~  224 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATL  224 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEE
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEE
Confidence            999999999987654 334544 448999999999  9999999999999 999999999887664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.1e-24  Score=196.93  Aligned_cols=203  Identities=13%  Similarity=0.174  Sum_probs=161.0

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCc------eEEEE--eeecCCceEEEEEecC-CCEEEEEeCCC
Q 022387           81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR------EIFRR--DFERGGGIGVVEMLFR-CNILALVGGGP  149 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~------~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~  149 (298)
                      ...|...|++++|+|+ +++|++|+.++ +++|++.+.+      .....  ...|...+..+.+.++ ...+++++   
T Consensus       109 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---  185 (416)
T 2pm9_A          109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG---  185 (416)
T ss_dssp             CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES---
T ss_pred             ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc---
Confidence            3567889999999998 89999999865 8899998765      32222  1115677888888887 56666666   


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeec-------CCceEEEEEeCC---eEEEEEC-C---eEEEEEcCCC-eEEEEEe-cc
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRD---RIIVVLE-Q---KIFVYNFADL-KLLHQIE-TI  213 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~-------~~~v~~v~~~~~---~l~v~~~-~---~I~iwd~~~~-~~i~~~~-~~  213 (298)
                          .|+.|++||+++++.+..+..       ...|.++.|+++   .++++.. +   .|++||+++. +++..+. .|
T Consensus       186 ----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~  261 (416)
T 2pm9_A          186 ----SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH  261 (416)
T ss_dssp             ----SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred             ----CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc
Confidence                679999999999998888876       457999999975   3555554 4   9999999875 6667777 67


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCC
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ...+..+++++. ++.+|+ +|+.||.|++|++.... +..+.+|...|++++|+|++ .+||+++.|++ |+|||+.++
T Consensus       262 ~~~v~~~~~s~~-~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~  338 (416)
T 2pm9_A          262 QKGILSLDWCHQ-DEHLLL-SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNL  338 (416)
T ss_dssp             SSCEEEEEECSS-CSSCEE-EEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCC
T ss_pred             cCceeEEEeCCC-CCCeEE-EEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCC
Confidence            766666666652 446777 48999999999988754 55889999999999999999 89999999999 999999987


Q ss_pred             cE
Q 022387          292 TL  293 (298)
Q Consensus       292 ~~  293 (298)
                      +.
T Consensus       339 ~~  340 (416)
T 2pm9_A          339 TN  340 (416)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-23  Score=192.61  Aligned_cols=202  Identities=9%  Similarity=0.087  Sum_probs=159.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCc---eEEEEeee-------------------------------------
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---EIFRRDFE-------------------------------------  125 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~---~~~~~~~~-------------------------------------  125 (298)
                      .++.+++|++||++|+++.++.|++|++.+++   .+......                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            37899999999999999888889999998887   43333210                                     


Q ss_pred             ----------------cCCceEEEEEecCCCEE-EEEeCCCCCCCCCCeEEEEeCC--CCcEEEEee---cCCceEEEEE
Q 022387          126 ----------------RGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS---FRSEVRSVKL  183 (298)
Q Consensus       126 ----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~v~iWD~~--~~~~~~~~~---~~~~v~~v~~  183 (298)
                                      |.+.+..+.+++++..+ ++++       .|++|+|||+.  +++.+..+.   +...|.++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD-------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEG-------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC-------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence                            11147788888888886 4544       57999999999  787777764   4468999999


Q ss_pred             eCC--eEEEEE-CCeEEEEEcCCCeEEE----EEeccCCCcceEEEEeCC-CCeEEEEecCCCceEEEEEcCCcc-eEe-
Q 022387          184 RRD--RIIVVL-EQKIFVYNFADLKLLH----QIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKR-TKF-  253 (298)
Q Consensus       184 ~~~--~l~v~~-~~~I~iwd~~~~~~i~----~~~~~~~~~~~~~~s~~~-d~~~la~sGs~dg~v~i~~~~~~~-~~~-  253 (298)
                      +++  .++++. ++.|++|++.+.+...    .+..|...+..+++++++ .+.+|+ +|+.||.|++|++.... +.. 
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE-EEETTSCEEEEEESCTTCEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE-EEcCCCcEEEEECCCCceeeee
Confidence            875  455554 4899999998776543    667777777778888761 146777 58999999999998765 334 


Q ss_pred             ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       254 ~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.+|...|++++|+ +|++||+++.|++ |+|||++++++++++
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTF  278 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeee
Confidence            66899999999999 9999999999999 999999999988764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=2e-23  Score=186.23  Aligned_cols=204  Identities=11%  Similarity=0.118  Sum_probs=157.5

Q ss_pred             CCCCCCeEEEEEcCCCCE-EEEEcC---Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecC---CCEEEEEeCCCCCCC
Q 022387           82 SSPPPTLLHISFNQDHGC-FAAGTD---HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR---CNILALVGGGPDPQY  153 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~-lasgs~---~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  153 (298)
                      ..|...|.+++|+|++.. +++|+.   ++ ++||++.+.+......+.|...+..+.+.++   +..+++++       
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-------   87 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD-------   87 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE-------
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec-------
Confidence            458889999999999964 556754   45 8899999887655544446788888888877   47777777       


Q ss_pred             CCCeEEEEeCCCCc-EEEEeec-CCceEEEEEe------CC--eEEEEE-CCeEEEEEcCCCe-EEEEEeccCC----Cc
Q 022387          154 PLNKVMIWDDHQSR-CIGELSF-RSEVRSVKLR------RD--RIIVVL-EQKIFVYNFADLK-LLHQIETIAN----PK  217 (298)
Q Consensus       154 ~d~~v~iWD~~~~~-~~~~~~~-~~~v~~v~~~------~~--~l~v~~-~~~I~iwd~~~~~-~i~~~~~~~~----~~  217 (298)
                      .|+.|++||+.+++ .+..+.. ...|.++.+.      ++  .++++. ++.|++||+.+.+ .+..+..+..    .+
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            67999999999887 6666664 4578888653      33  555555 5899999998876 6777766544    33


Q ss_pred             ceEEEE--eCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECC---CCCEEEEEeCCCCEEEEEECCCCc
Q 022387          218 GLCAVS--QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       218 ~~~~~s--~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fsp---dg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ..++++  +++++.++++ |+.||.|++|++..........|...|++++|+|   ++.+|++++.||. |+|||+++++
T Consensus       168 ~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~  245 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQH  245 (357)
T ss_dssp             EEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCC
Confidence            333321  4556688884 8999999999999888777788999999999999   9999999999999 9999998876


Q ss_pred             EE
Q 022387          293 LL  294 (298)
Q Consensus       293 ~l  294 (298)
                      .+
T Consensus       246 ~~  247 (357)
T 3i2n_A          246 PT  247 (357)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=8.8e-23  Score=188.98  Aligned_cols=195  Identities=12%  Similarity=0.226  Sum_probs=156.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .|...|.+++|  ||++|++|+.++ +++||+.+.+....... |.+.+..+  .++++.+++++       .|++|++|
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l--~~~~~~l~sg~-------~dg~i~vw  198 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCL--QYDERVIITGS-------SDSTVRVW  198 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEE--ECCSSEEEEEE-------TTSCEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEE--EECCCEEEEEc-------CCCeEEEE
Confidence            45567988877  899999999865 88999998887665543 45555544  45788888877       68999999


Q ss_pred             eCCCCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEE---EEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          162 DDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       162 D~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i---~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      |+.+++.+..+..+ ..|.++.++++.++++. ++.|++||+.+.+.+   ..+..|...+..+++  ++  .+++ +|+
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~-s~~  273 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD--KYIV-SAS  273 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET--TEEE-EEE
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC--CEEE-EEe
Confidence            99999998888754 58999999998888776 489999999876654   555666665555554  33  6676 489


Q ss_pred             CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .||.|++||..+.. +..+.+|...|.+++|  ++.+|++|+.||+ |+|||++++++++++
T Consensus       274 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          274 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVL  332 (435)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEE
Confidence            99999999998765 4588999999999999  5789999999999 999999999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=6.9e-23  Score=195.88  Aligned_cols=203  Identities=14%  Similarity=0.137  Sum_probs=159.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCC----ceEEEEeeecCCc-eEEEEEec--CCCEEEEEeCCCCCCCCC
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----REIFRRDFERGGG-IGVVEMLF--RCNILALVGGGPDPQYPL  155 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~----~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~d  155 (298)
                      .|+..|.+++|+|||++||+|+++.++||++++.    +....... |... +..+.+++  ++..+++++       .|
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~-------~d   87 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGD-------ES   87 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEE-------TT
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEec-------CC
Confidence            4567899999999999999999888999999977    65555543 6777 99999999  889888887       68


Q ss_pred             CeEEEEeCCCC--------cEEEEee-cCCce--------------------------------------------EEEE
Q 022387          156 NKVMIWDDHQS--------RCIGELS-FRSEV--------------------------------------------RSVK  182 (298)
Q Consensus       156 ~~v~iWD~~~~--------~~~~~~~-~~~~v--------------------------------------------~~v~  182 (298)
                      ++|++||+.++        +.+..+. +...|                                            .++.
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH  167 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE
Confidence            99999999744        3343333 12234                                            4444


Q ss_pred             EeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCC---CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eee
Q 022387          183 LRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI  254 (298)
Q Consensus       183 ~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~---~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~  254 (298)
                      |+++   .++++. ++.|++||+.+.+.+.++..|..   .+..++++++. +.++++ |+.||.|++|++..... ..+
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~-~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVIT-VGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-CCEEEE-EETTCCEEEEETTTCCEEEEC
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC-CCEEEE-EeCCCeEEEEECCCCCEeEEe
Confidence            4443   244443 48999999999999999998877   66666665540 477774 89999999999887654 466


Q ss_pred             -c---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          255 -M---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       255 -~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       .   .|...|++++|+ ++++|++++.|++ |+|||+++++++.++
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGADAT-IRVWDVTTSKCVQKW  290 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCCCc-EEEEECCCCcEEEEE
Confidence             5   899999999999 9999999999999 999999999988764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.92  E-value=2.9e-23  Score=186.36  Aligned_cols=200  Identities=11%  Similarity=0.042  Sum_probs=158.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceE---EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|.+++|+|++++|++|+.++ +++|+++.....   ......|...+..+.+.+++..+++++       .|+.
T Consensus        93 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~  165 (372)
T 1k8k_C           93 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-------CDFK  165 (372)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-------CCCC
Confidence            45677999999999999999999865 889999876631   122111467788888988888888877       6799


Q ss_pred             EEEEeCC------------------CCcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCC
Q 022387          158 VMIWDDH------------------QSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIAN  215 (298)
Q Consensus       158 v~iWD~~------------------~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~  215 (298)
                      |++||++                  .++.+..+.. ...|.++.|+++  .++++. ++.|++||+++++++.++..|..
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  245 (372)
T 1k8k_C          166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  245 (372)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC
Confidence            9999954                  5677777754 457999999875  455554 58999999999999999998887


Q ss_pred             CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cce---------------------------------------Eee
Q 022387          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRT---------------------------------------KFI  254 (298)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~---------------------------------------~~~  254 (298)
                      ++..+++++++  .++++ | .||.|++|+...  +..                                       ..+
T Consensus       246 ~v~~~~~~~~~--~~l~~-~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          246 PLLAVTFITES--SLVAA-G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             CEEEEEEEETT--EEEEE-E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CeEEEEEecCC--CEEEE-E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            87777877654  77774 5 899999999876  210                                       223


Q ss_pred             -cccccceeEEEEC-CCC---CEEEEEeCCCCEEEEEECCCCcE
Q 022387          255 -MAHDSRIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       255 -~~H~~~V~~l~fs-pdg---~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                       .+|...|++|+|+ ++|   ++|||||.||+ |+|||+++++.
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~-i~~W~~~~~~~  364 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG-MSIWDVRSLES  364 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSE-EEEEEHHHHHH
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCc-eEEEEecChhH
Confidence             4899999999966 777   99999999999 99999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.92  E-value=1.1e-22  Score=189.11  Aligned_cols=199  Identities=17%  Similarity=0.243  Sum_probs=154.5

Q ss_pred             CCCCCC-eEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPT-LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~-V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|... +.++.|  ++++|++|+.+| |++||+.+.+.+..... |.+.+..+.+..+. .+++++       .|++|+
T Consensus       118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s-------~dg~i~  186 (464)
T 3v7d_B          118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGS-------TDRTVR  186 (464)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT-EEEEEE-------TTSCEE
T ss_pred             cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC-EEEEEe-------CCCCEE
Confidence            455555 566666  577999999865 89999999887666553 67788888887655 666666       689999


Q ss_pred             EEeCCCCcEEEEeec-CCceEEEEEeC--C--eEEEEE-CCeEEEEEcCCCeE-----------------------EEEE
Q 022387          160 IWDDHQSRCIGELSF-RSEVRSVKLRR--D--RIIVVL-EQKIFVYNFADLKL-----------------------LHQI  210 (298)
Q Consensus       160 iWD~~~~~~~~~~~~-~~~v~~v~~~~--~--~l~v~~-~~~I~iwd~~~~~~-----------------------i~~~  210 (298)
                      +||+++++.+..+.. ...|.++.+++  +  .++++. ++.|++||+.+.+.                       +..+
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            999999999888874 46899998873  3  344444 58999999977653                       3344


Q ss_pred             eccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       211 ~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..|..  .+.++++++  .+++ +|+.||.|++||+.... +..+.+|...|++++|+|+|++|++|+.||+ |+|||++
T Consensus       267 ~~~~~--~v~~~~~~~--~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~  340 (464)
T 3v7d_B          267 RGHMA--SVRTVSGHG--NIVV-SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLE  340 (464)
T ss_dssp             CCCSS--CEEEEEEET--TEEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETT
T ss_pred             cCccc--eEEEEcCCC--CEEE-EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECC
Confidence            44433  344555554  6777 48999999999998765 4578899999999999999999999999999 9999999


Q ss_pred             CCcEEEec
Q 022387          290 DGTLLQEG  297 (298)
Q Consensus       290 tg~~l~~~  297 (298)
                      ++++++++
T Consensus       341 ~~~~~~~~  348 (464)
T 3v7d_B          341 NGELMYTL  348 (464)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEE
Confidence            99998775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=5.2e-23  Score=188.33  Aligned_cols=197  Identities=11%  Similarity=0.097  Sum_probs=154.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|++++|+|++++|++|+.++ +++|++.+.+....... |...+..+.+.+++..+++++       .|++|++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~-------~d~~v~i  207 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSAS-------LDGTIRL  207 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEE-------TTSCEEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEc-------CCCcEEE
Confidence            57888999999999999999999865 88999998876655543 678899999999999888877       6899999


Q ss_pred             EeCCCCcEEEEeecC----CceEEEEE---------------------eCC--eEEEEE-CCeEEEEEcCCCeEEEEEec
Q 022387          161 WDDHQSRCIGELSFR----SEVRSVKL---------------------RRD--RIIVVL-EQKIFVYNFADLKLLHQIET  212 (298)
Q Consensus       161 WD~~~~~~~~~~~~~----~~v~~v~~---------------------~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~  212 (298)
                      ||+++++.+..+..+    ..+.++.+                     +++  .++++. ++.|++||+++.+.+..+..
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence            999999988887642    34555554                     343  444444 57999999999888877754


Q ss_pred             -cCCCcceEEEEeCCCCe-EEEEecCCCceEEEEEcCCcc--eEeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          213 -IANPKGLCAVSQGVGSL-VLVCPGLQKGQVRVEHYASKR--TKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       213 -~~~~~~~~~~s~~~d~~-~la~sGs~dg~v~i~~~~~~~--~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                       |...+..+++++  ++. +|+ +|+.||.|++|++....  +..+.. |...|+++.| +++++||+++.|++ |+|||
T Consensus       288 ~~~~~v~~~~~~~--~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~-v~iw~  362 (420)
T 3vl1_A          288 KFTCSCNSLTVDG--NNANYIY-AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS-IKLDI  362 (420)
T ss_dssp             TTSSCEEEEEECS--SCTTEEE-EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE-EEEEE
T ss_pred             ccCCCceeEEEeC--CCCCEEE-EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCcc-EEEEe
Confidence             445555555554  445 666 48999999999998653  456766 6778888865 57899999999999 99999


Q ss_pred             CCCC
Q 022387          288 TLDG  291 (298)
Q Consensus       288 ~~tg  291 (298)
                      +.+.
T Consensus       363 ~~~~  366 (420)
T 3vl1_A          363 ISDP  366 (420)
T ss_dssp             ECCT
T ss_pred             ccCC
Confidence            8874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.92  E-value=1.6e-22  Score=187.41  Aligned_cols=196  Identities=16%  Similarity=0.233  Sum_probs=159.5

Q ss_pred             CCCCCCe-EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTL-LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V-~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...| .+  ++++|++|++|+.+| +++|++.+.+.+..... |.+.+..+.+  +++.+++++       .|++|+
T Consensus       115 ~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~s~~-------~dg~i~  182 (445)
T 2ovr_B          115 KGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQM--RDNIIISGS-------TDRTLK  182 (445)
T ss_dssp             ECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEE--ETTEEEEEE-------TTSCEE
T ss_pred             cccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEe--cCCEEEEEe-------CCCeEE
Confidence            4565554 54  555789999999866 88999998887655543 5666655555  467777777       689999


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      +||+.+++.+..+..+ ..|.++.++++.++++. ++.|++||+.+++.+..+..|...+.++++  +  +.+++ +|+.
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~-~~~~  257 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D--GRRVV-SGAY  257 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C--SSCEE-EEET
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C--CCEEE-EEcC
Confidence            9999999988888754 58999999999888877 589999999999999999988777666655  3  35666 4899


Q ss_pred             CceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ||.|++|+..... +..+.+|...|.+++|  ++.+|++++.||+ |+|||++++++++++
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~  315 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTL  315 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEE
Confidence            9999999987654 4588899999999999  8999999999999 999999999988765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.92  E-value=1.1e-22  Score=210.55  Aligned_cols=205  Identities=12%  Similarity=0.166  Sum_probs=170.9

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|...|++++|+|||++||+|+.++ |+||+..+.+.+..... |.+.+..+.+++++..+++++       .|++|+
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~-------~d~~v~  682 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCS-------ADKKVK  682 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEe-------CCCeEE
Confidence            357888999999999999999999866 88999999887666654 688899999999999998887       679999


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeC--C--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRR--D--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~--~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      |||+.+++.+..+..+ ..|.++.|++  +  .++++. ++.|++||+.+++++.++..|...+..++++++  +.+++ 
T Consensus       683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~-  759 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD--DELLA-  759 (1249)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS--TTEEE-
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC--CCEEE-
Confidence            9999999998888755 5899999986  3  333444 479999999999999999998887777777665  47777 


Q ss_pred             ecCCCceEEEEEcCCcceE--------------------------------------------------------eeccc
Q 022387          234 PGLQKGQVRVEHYASKRTK--------------------------------------------------------FIMAH  257 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~--------------------------------------------------------~~~~H  257 (298)
                      +|+.||.|++|++......                                                        ...+|
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence            4899999999997643210                                                        11278


Q ss_pred             ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ...|++++|+|+++++++++.||+ |+|||+.+++++.++
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADC  878 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeec
Confidence            889999999999999999999999 999999999887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9e-23  Score=185.74  Aligned_cols=203  Identities=17%  Similarity=0.207  Sum_probs=157.3

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEc----CCCc------eEEEEeee---------cCCceEEEEEecCCC
Q 022387           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNC----DPFR------EIFRRDFE---------RGGGIGVVEMLFRCN  140 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~----~~~~------~~~~~~~~---------~~~~~~~~~~~~~~~  140 (298)
                      +.|...|++++|+|+|+ +||+|+.++ ++||++    .+.+      ........         |.+.+..+.+.+++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45567999999999999 999999855 889999    7766      22222210         244788899999898


Q ss_pred             EEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCC
Q 022387          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANP  216 (298)
Q Consensus       141 ~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~  216 (298)
                      .+++++       .|+.|++|| .+++.+..+.. ...|.++.|+++  .++++. ++.|++||+.+++.+..+..+...
T Consensus       122 ~l~~~~-------~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  193 (425)
T 1r5m_A          122 SIVTGV-------ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG  193 (425)
T ss_dssp             EEEEEE-------TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred             EEEEEe-------CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence            888887       679999999 56667766664 468999999875  455554 589999999999999988877665


Q ss_pred             ---------------cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCC
Q 022387          217 ---------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       217 ---------------~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg  280 (298)
                                     +..++++++  +.+++  |+.+|.|++|+..... ...+..|...|++++|+|++++|++++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDD--DKFVI--PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             ------------CCCBSCCEEEET--TEEEE--ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ccceeeccccCCcceeeEEEEcCC--CEEEE--EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence                           666677665  35443  7999999999998754 457889999999999999999999999999


Q ss_pred             CEEEEEECCCCcEEEec
Q 022387          281 TLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       281 t~IrIWd~~tg~~l~~~  297 (298)
                      . |+|||+++++++.++
T Consensus       270 ~-i~i~d~~~~~~~~~~  285 (425)
T 1r5m_A          270 T-LRIWHGGNGNSQNCF  285 (425)
T ss_dssp             C-EEEECSSSBSCSEEE
T ss_pred             E-EEEEECCCCccceEe
Confidence            9 999999998876654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.9e-23  Score=204.73  Aligned_cols=203  Identities=17%  Similarity=0.182  Sum_probs=155.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecC--CCEEEEEeCCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPLN  156 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~  156 (298)
                      ...|.+.|++++|+|+|++|++|+.+| |+||++..........+. |.+.+..+.+.++  ++.+++++       .|+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-------~Dg   77 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   77 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-------TTS
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe-------CCC
Confidence            467888999999999999999998765 889999854433333332 6778888888877  77888877       689


Q ss_pred             eEEEEeCCCCc--EEEEee-cCCceEEEEEeCC----eEEEEE-CCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCC
Q 022387          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD----RIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       157 ~v~iWD~~~~~--~~~~~~-~~~~v~~v~~~~~----~l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      +|++||+.+++  .+..+. +...|.++.|+++    .++++. ++.|++||+++..  ....+..|...+..+++++..
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999999886  444444 4468999999865    455555 5899999997763  334555666666666665531


Q ss_pred             -----------CCeEEEEecCCCceEEEEEcCCcc-----eEeecccccceeEEEECCC---CCEEEEEeCCCCEEEEEE
Q 022387          227 -----------GSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       227 -----------d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspd---g~~lAt~S~Dgt~IrIWd  287 (298)
                                 ++.+++ +|+.||.|++|+.....     ...+.+|...|++|+|+|+   |++||+|+.||+ |+|||
T Consensus       158 ~~~~~~~~~~~d~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd  235 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWT  235 (753)
T ss_dssp             ---------CGGGCCEE-EEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEE
T ss_pred             cccccccccCCCCCEEE-EEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEec
Confidence                       356777 48999999999987642     3478899999999999999   999999999999 99999


Q ss_pred             CCCCc
Q 022387          288 TLDGT  292 (298)
Q Consensus       288 ~~tg~  292 (298)
                      +.+++
T Consensus       236 ~~~~~  240 (753)
T 3jro_A          236 QDNEQ  240 (753)
T ss_dssp             ESSSS
T ss_pred             CCCCC
Confidence            99874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=3.8e-23  Score=183.78  Aligned_cols=195  Identities=12%  Similarity=0.029  Sum_probs=151.7

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc----eEEEEeeecCCceEEEEEecCCC-EEEEEeCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  154 (298)
                      ...|...|++++|+|+|++|++|+.++ ++||+++..+    .....  .|...+..+.+.+++. .+++++       .
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~-------~   77 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT-------V   77 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE-------T
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEc-------C
Confidence            346788999999999999999998755 8899998876    32222  2688899999998888 888877       6


Q ss_pred             CCeEEEEeC-CCCcEEEEee--cCCceEEEEEeC-CeEEEEE-CCeEEEEEcCC---------CeEEEEEeccCCCcceE
Q 022387          155 LNKVMIWDD-HQSRCIGELS--FRSEVRSVKLRR-DRIIVVL-EQKIFVYNFAD---------LKLLHQIETIANPKGLC  220 (298)
Q Consensus       155 d~~v~iWD~-~~~~~~~~~~--~~~~v~~v~~~~-~~l~v~~-~~~I~iwd~~~---------~~~i~~~~~~~~~~~~~  220 (298)
                      |+.|++||+ .+++......  +...|.++.|++ +.++++. ++.|++||+++         .+++.++. +...+..+
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM  156 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred             CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence            799999999 8877643334  556899999985 4555554 58999999987         66555555 44444444


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCC-cc--e-EeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCC
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR--T-KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~--~-~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +  +++++  ++ +|+.+|.|++|++.. ..  . .....|...|++++|+| ++++||+++.||. |+||+++.+
T Consensus       157 ~--~~~~~--l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~  226 (342)
T 1yfq_A          157 D--TNSSR--LI-VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQ  226 (342)
T ss_dssp             E--ECSSE--EE-EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTT
T ss_pred             E--ecCCc--EE-EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCC
Confidence            4  44544  44 389999999999987 33  2 24567889999999999 9999999999999 999999876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=4.5e-23  Score=184.20  Aligned_cols=197  Identities=9%  Similarity=0.045  Sum_probs=146.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEE--ecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEM--LFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|++++|+|++++|++|+.++ +++|++.+.+......  |...+..+.+  ..++..+++++       .|++|
T Consensus        83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~-------~dg~i  153 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGS-------WDKTL  153 (368)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEEEECSSCEEEEEEE-------TTSEE
T ss_pred             ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc--ccCceEEEEEEeCCCCCEEEEcc-------CCCcE
Confidence            45778999999999999999999866 8899999887655444  6888999998  55666677766       67999


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC------------------------------------------------eEEE
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD------------------------------------------------RIIV  190 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~------------------------------------------------~l~v  190 (298)
                      ++||+++++.+..+..+..+.++.+...                                                .+++
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            9999999887776665544443333221                                                1444


Q ss_pred             EE-CCeEEEEEcCCC---eEEEEEeccCCCc----------ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeec
Q 022387          191 VL-EQKIFVYNFADL---KLLHQIETIANPK----------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM  255 (298)
Q Consensus       191 ~~-~~~I~iwd~~~~---~~i~~~~~~~~~~----------~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~  255 (298)
                      +. ++.|++||+...   +.+..+..|....          .+.++.+++++.+|+ +|+.||.|++|++.... +..+.
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA-TVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE-EEETTSCEEEEETTTTEEEEECC
T ss_pred             ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE-EEccCCeEEEEECCCCcEEEEec
Confidence            44 478888888765   4556666654310          234445555667887 48999999999998764 55889


Q ss_pred             ccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       256 ~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|...|++|+|+|+|++||++|.|+. .+.|++.
T Consensus       313 ~~~~~v~~~~~s~~g~~l~~~s~d~~-~~~~~~~  345 (368)
T 3mmy_A          313 QLDQPISACCFNHNGNIFAYASSYDW-SKGHEFY  345 (368)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEECCCS-TTCGGGC
T ss_pred             CCCCCceEEEECCCCCeEEEEecccc-ccccccc
Confidence            99999999999999999999999985 5555543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.8e-22  Score=174.66  Aligned_cols=195  Identities=13%  Similarity=0.145  Sum_probs=151.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|.+++|  ++++|++|+.++ +++|+  ..+....... |...+..+.+.+ +++.+++++       .|+.|+
T Consensus       101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~  168 (313)
T 3odt_A          101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSFSENKFLTAS-------ADKTIK  168 (313)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEETTTTEEEEEE-------TTSCEE
T ss_pred             hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccCCCCEEEEEE-------CCCCEE
Confidence            567789999999  678999998865 78999  4444444433 577787777765 788888877       679999


Q ss_pred             EEeCCCCcEEEEee--cCCceEEEEEeCCeEE-EEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQSRCIGELS--FRSEVRSVKLRRDRII-VVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~~~~~~~~--~~~~v~~v~~~~~~l~-v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +||  .++....+.  +...+.++.++++..+ ++. ++.|++||+++++.+.++..|...+..+++++++  . ++ +|
T Consensus       169 i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~-l~-~~  242 (313)
T 3odt_A          169 LWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG--D-IV-SC  242 (313)
T ss_dssp             EEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS--C-EE-EE
T ss_pred             EEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC--C-EE-EE
Confidence            999  344455554  4568999999876443 333 5899999999999999999888777777766654  4 44 48


Q ss_pred             CCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       236 s~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +.||.|++|++.... ...+..|...|++++|+|+|+ |++++.||. |+|||+++++.+.+
T Consensus       243 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~iw~~~~~~~~~~  302 (313)
T 3odt_A          243 GEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL-VRIFSQEKSRWASE  302 (313)
T ss_dssp             ETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC-EEEEESCGGGCCC-
T ss_pred             ecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc-EEEEeCCCCceeeh
Confidence            999999999987765 457889999999999999998 566889999 99999999876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=1.7e-22  Score=187.08  Aligned_cols=191  Identities=12%  Similarity=0.262  Sum_probs=154.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|  ++++|++|+.+| +++||+.+.+.+..... |...+..  +.++++.+++++       .|++|++
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~--l~~~~~~l~s~s-------~dg~i~v  237 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLH--LRFNNGMMVTCS-------KDRSIAV  237 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEE--EECCTTEEEEEE-------TTSCEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEE--EEEcCCEEEEee-------CCCcEEE
Confidence            568889999999  789999999866 88999999887655543 4444444  445677777777       6899999


Q ss_pred             EeCCCCcEE---EEee-cCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          161 WDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       161 WD~~~~~~~---~~~~-~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ||+.++..+   ..+. +...|.++.++.+.++++. ++.|++||+++++.+.++..|...+.++++  ++  .+++ +|
T Consensus       238 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~--~~l~-~g  312 (435)
T 1p22_A          238 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RD--RLVV-SG  312 (435)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ET--TEEE-EE
T ss_pred             EeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CC--CEEE-EE
Confidence            999987654   3333 4458999999888888877 589999999999999999988777665555  33  5666 48


Q ss_pred             CCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       236 s~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +.||.|++||..+.. +.++.+|...|++++|  ++.+||+|+.||+ |+|||+.+++
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~  367 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAAL  367 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHT
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCC
Confidence            999999999998654 5589999999999999  7899999999999 9999998766

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.7e-23  Score=199.21  Aligned_cols=204  Identities=8%  Similarity=-0.024  Sum_probs=149.4

Q ss_pred             CCCCeEEEEEcCCC---------CEEEEEc-------------------CCe-EEEEEcCCCceEEE--Eeee-cCCceE
Q 022387           84 PPPTLLHISFNQDH---------GCFAAGT-------------------DHG-FRIYNCDPFREIFR--RDFE-RGGGIG  131 (298)
Q Consensus        84 ~~~~V~~v~fs~dg---------~~lasgs-------------------~~g-i~vw~~~~~~~~~~--~~~~-~~~~~~  131 (298)
                      ....|.+|+|+|++         ++||+|+                   .|+ |+||++++.+....  ..+. |.+.+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            45689999999986         6777754                   344 78999987654221  1111 457788


Q ss_pred             EEEEecC------CCEEEEEeCCCCCCCCCCeEEEEeCCCCcE-----------EEEeec-CCceEEEEEeCC-eEEEEE
Q 022387          132 VVEMLFR------CNILALVGGGPDPQYPLNKVMIWDDHQSRC-----------IGELSF-RSEVRSVKLRRD-RIIVVL  192 (298)
Q Consensus       132 ~~~~~~~------~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~-----------~~~~~~-~~~v~~v~~~~~-~l~v~~  192 (298)
                      .+.|++.      +..+|.++       .|++|+|||+.++..           ...+.. ...|.+++|+++ .++++.
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s-------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs  284 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVS-------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGF  284 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEE-------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEE
T ss_pred             EEEECCCCCCCCCCceEEEEe-------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            8888875      35777777       689999999987532           123433 357999999865 444444


Q ss_pred             -CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCC-eEEEEecCCCceEEEEEcCCcc-eEeeccccc--ceeEEEE
Q 022387          193 -EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFAL  266 (298)
Q Consensus       193 -~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~-~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~--~V~~l~f  266 (298)
                       +++|++||+++. .+...+..|..++..+++.+.+++ .+|| +|+.||+|+|||+.... ..++.+|..  .|++|+|
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS-TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE-EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE-EeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence             589999999865 445568888888777755556665 6777 69999999999997643 346667764  5899999


Q ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       267 spdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +|+++.||+++.|++ |||||+++++++++
T Consensus       364 sp~~~~l~s~~~d~t-v~lwd~~~~~~~~~  392 (524)
T 2j04_B          364 CPQIYSYIYSDGASS-LRAVPSRAAFAVHP  392 (524)
T ss_dssp             ETTTTEEEEECSSSE-EEEEETTCTTCCEE
T ss_pred             CCCcCeEEEeCCCCc-EEEEECccccccee
Confidence            999999999999999 99999999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=2.1e-22  Score=186.56  Aligned_cols=199  Identities=11%  Similarity=0.156  Sum_probs=154.6

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEcCCCce-------EEEEeeecCCceEEEEEec-CCCEEEEEeCCCCC
Q 022387           82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFRE-------IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDP  151 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  151 (298)
                      ..|...|++++|+|++. +|++|+.+| |+||++.....       ...... |...+..+.+.+ +...+++++     
T Consensus       178 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~-----  251 (430)
T 2xyi_A          178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVA-----  251 (430)
T ss_dssp             ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEE-----
T ss_pred             cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEe-----
Confidence            46778999999999998 999999866 88999987321       111211 567788888887 566677766     


Q ss_pred             CCCCCeEEEEeCCCC---cEEEEee-cCCceEEEEEeCCe---EEEEE-CCeEEEEEcCC-CeEEEEEeccCCCcceEEE
Q 022387          152 QYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDR---IIVVL-EQKIFVYNFAD-LKLLHQIETIANPKGLCAV  222 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~---~~~~~~~-~~~~v~~v~~~~~~---l~v~~-~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~  222 (298)
                        .|+.|++||++++   ..+..+. +...|.++.|+++.   ++++. ++.|++||+++ .+++.++..|...+..+++
T Consensus       252 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~  329 (430)
T 2xyi_A          252 --DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  329 (430)
T ss_dssp             --TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred             --CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence              6799999999976   4555554 45689999998742   44444 58999999987 5678888888777777777


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCC---------------cceEeecccccceeEEEECCCCC-EEEEEeCCCCEEEEE
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYAS---------------KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIF  286 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~---------------~~~~~~~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIW  286 (298)
                      ++++. .+|+ +|+.||.|++|++..               ..+..+.+|...|++++|+|+++ +||+++.||. |+||
T Consensus       330 sp~~~-~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~-i~iw  406 (430)
T 2xyi_A          330 SPHNE-TILA-SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI-MQVW  406 (430)
T ss_dssp             CSSCT-TEEE-EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE-EEEE
T ss_pred             CCCCC-CEEE-EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC-EEEe
Confidence            66542 3454 588999999999876               33457789999999999999999 9999999999 9999


Q ss_pred             ECCCC
Q 022387          287 NTLDG  291 (298)
Q Consensus       287 d~~tg  291 (298)
                      ++.++
T Consensus       407 ~~~~~  411 (430)
T 2xyi_A          407 QMAEN  411 (430)
T ss_dssp             EECHH
T ss_pred             Ecccc
Confidence            98754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=1.9e-22  Score=186.79  Aligned_cols=199  Identities=12%  Similarity=0.105  Sum_probs=153.8

Q ss_pred             cCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCC----------CceEEEEeeecCCceEEEEEecCCC-EEEEEeC
Q 022387           81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDP----------FREIFRRDFERGGGIGVVEMLFRCN-ILALVGG  147 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  147 (298)
                      ...|...|++++|+|+ +.+||+|+.+| |+||++..          ......... |...+..+.+.+... .+++++ 
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~-  201 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSAS-  201 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEEC-
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEe-
Confidence            3567789999999997 68999999866 88999976          344444443 677888888888776 666665 


Q ss_pred             CCCCCCCCCeEEEEeCCCCcE-------EEEe-ecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCC---eEEEEEec
Q 022387          148 GPDPQYPLNKVMIWDDHQSRC-------IGEL-SFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADL---KLLHQIET  212 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~~~~-------~~~~-~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~---~~i~~~~~  212 (298)
                            .|++|++||+.++..       ...+ .+...|.++.|++   ..++++. ++.|++||+++.   +.+..+..
T Consensus       202 ------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          202 ------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             ------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             ------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence                  679999999987321       2233 3445799999986   2444444 589999999876   57778888


Q ss_pred             cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECC
Q 022387          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       213 ~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~  289 (298)
                      |...+..+++++++. .+++ +|+.||.|++|++..  ..+..+.+|...|++|+|+|++ .+||+++.||+ |+|||+.
T Consensus       276 ~~~~v~~i~~~p~~~-~~l~-tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~  352 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSE-FILA-TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS  352 (430)
T ss_dssp             CSSCEEEEEECSSCT-TEEE-EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred             CCCCeEEEEeCCCCC-CEEE-EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence            877777777766542 2455 589999999999986  3466888999999999999998 47999999999 9999998


Q ss_pred             C
Q 022387          290 D  290 (298)
Q Consensus       290 t  290 (298)
                      .
T Consensus       353 ~  353 (430)
T 2xyi_A          353 K  353 (430)
T ss_dssp             G
T ss_pred             C
Confidence            7

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.1e-21  Score=175.32  Aligned_cols=209  Identities=8%  Similarity=0.047  Sum_probs=163.8

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ...|...|.+++|+|++++|++|+.++ +++|++.+.+......  +...+..+.+.+++..+++++...  ...++.|+
T Consensus        70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~--~~~~g~i~  145 (369)
T 3zwl_B           70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNV--MKNPGSIN  145 (369)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCB--TTBCCEEE
T ss_pred             hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCc--cCCCCEEE
Confidence            346778999999999999999998865 8899999988776666  478899999999999888877210  00238999


Q ss_pred             EEeCCCCcEE-----------EEee-cCC--ceEEEEEeCC--eEEEEE-CCeEEEEEcCC-CeEEEEEeccCCCcceEE
Q 022387          160 IWDDHQSRCI-----------GELS-FRS--EVRSVKLRRD--RIIVVL-EQKIFVYNFAD-LKLLHQIETIANPKGLCA  221 (298)
Q Consensus       160 iWD~~~~~~~-----------~~~~-~~~--~v~~v~~~~~--~l~v~~-~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~  221 (298)
                      +||+..+...           ..+. +..  .+.++.|+++  .++++. ++.|++||+++ .+.+..+..|...+..++
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  225 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ  225 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE
Confidence            9998765321           1222 122  7888999875  455554 48999999988 788888888877766666


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC--------------CEEEEEE
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--------------TLVRIFN  287 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--------------t~IrIWd  287 (298)
                      +++  ++.+|++ |+.||.|++||+..........|...+.+++|+|++++|++++.++              . |++||
T Consensus       226 ~~~--~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~d  301 (369)
T 3zwl_B          226 FSP--DLTYFIT-SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARFYH  301 (369)
T ss_dssp             ECT--TSSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEEEE
T ss_pred             ECC--CCCEEEE-ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEEEe
Confidence            665  4577774 8999999999998876554344889999999999999999999998              7 99999


Q ss_pred             CCCCcEEEec
Q 022387          288 TLDGTLLQEG  297 (298)
Q Consensus       288 ~~tg~~l~~~  297 (298)
                      +.+++++.++
T Consensus       302 ~~~~~~~~~~  311 (369)
T 3zwl_B          302 KIFEEEIGRV  311 (369)
T ss_dssp             TTTCCEEEEE
T ss_pred             cCCCcchhhe
Confidence            9999887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.4e-23  Score=189.55  Aligned_cols=194  Identities=8%  Similarity=0.027  Sum_probs=141.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc---eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..|...|.+++|+|+|++|++|+.++ ++||++.+.+   ....... |...+..+.+.+++..+++++       .|++
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-------~d~~  123 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNEDKFAVGS-------GARV  123 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSSCCEEEE-------SSSC
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCCEEEEEe-------cCCe
Confidence            35677999999999999999999755 8999998866   3222222 677888888888888888887       6799


Q ss_pred             EEEEeCCCCc---EEEEee--cCCceEEEEEeCC--eEEEEE-CCeEEEEEcC------------------CCeEEEEEe
Q 022387          158 VMIWDDHQSR---CIGELS--FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFA------------------DLKLLHQIE  211 (298)
Q Consensus       158 v~iWD~~~~~---~~~~~~--~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~------------------~~~~i~~~~  211 (298)
                      |++||+++++   ....+.  +...|.++.|+++  .++++. ++.|++||+.                  .++++.++ 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            9999999876   355555  4568999999875  455544 5899999995                  24555555 


Q ss_pred             ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-----eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       212 ~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      .|...+..+++++  ++.+|++ |+.||.|++|++....     +..+.+|...|++++|+|+|++||+|+.|+. + +|
T Consensus       203 ~~~~~v~~~~~sp--~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~  277 (377)
T 3dwl_C          203 PSGGWVHAVGFSP--SGNALAY-AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP-I-LL  277 (377)
T ss_dssp             CCSSSEEEEEECT--TSSCEEE-EETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE-E-EE
T ss_pred             cCCceEEEEEECC--CCCEEEE-EeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE-E-EE
Confidence            6666655555555  5577874 8999999999998764     4578899999999999999999999986665 5 77


Q ss_pred             ECC
Q 022387          287 NTL  289 (298)
Q Consensus       287 d~~  289 (298)
                      +..
T Consensus       278 ~~~  280 (377)
T 3dwl_C          278 QGN  280 (377)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=3.3e-23  Score=214.48  Aligned_cols=201  Identities=16%  Similarity=0.244  Sum_probs=171.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      +...|.+++|+|+|+++++|+.+| +++|++.+.+....... |.+.+..+.+++++..+++++       .|++|++||
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~-------~dg~i~vwd 1031 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTADGKTLISSS-------EDSVIQVWN 1031 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC-CSSCCCCEEECSSSSCEEEEC-------SSSBEEEEE
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc-CCCceEEEEECCCCCEEEEEc-------CCCEEEEEE
Confidence            345899999999999999999866 88999998876555443 677888899999998888877       679999999


Q ss_pred             CCCCcEEEEeecCCceEEEEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce
Q 022387          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (298)
                      +.+++......+...|.++.++++..+++.  ++.|++||+.+++.+.++..|...+..+++++++  .+++ +|+.||.
T Consensus      1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~-s~s~d~~ 1108 (1249)
T 3sfz_A         1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA--TKFS-STSADKT 1108 (1249)
T ss_dssp             TTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSS--SSCE-EECCSSC
T ss_pred             CCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCC--CEEE-EEcCCCc
Confidence            999988766667778999999886544433  5899999999999999999998888888887654  6777 4899999


Q ss_pred             EEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       241 v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      |++|++.... ...+.+|...|++++|+|||++||+|+.||+ |+|||+.+|+++++
T Consensus      1109 v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A         1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHS 1164 (1249)
T ss_dssp             CCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSSSCCCCC
T ss_pred             EEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceEEE
Confidence            9999997654 5588999999999999999999999999999 99999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.5e-22  Score=198.93  Aligned_cols=202  Identities=11%  Similarity=0.016  Sum_probs=157.3

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecC--CCEEEEEeCCCCCCCCC
Q 022387           82 SSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFR--CNILALVGGGPDPQYPL  155 (298)
Q Consensus        82 ~~~~~~V~~v~fs~d--g~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d  155 (298)
                      ..|...|++++|+++  |++|++|+.|| +++|++.+.+......+. |...+..+.++++  +..+++++       .|
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-------~d  122 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-------SD  122 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe-------CC
Confidence            457779999999988  99999999866 889999987633233221 6778889999888  78888877       68


Q ss_pred             CeEEEEeCCCCcE--EEEe-ecCCceEEEEEeC---------------CeEEEEE-CCeEEEEEcCCC----eEEEEEec
Q 022387          156 NKVMIWDDHQSRC--IGEL-SFRSEVRSVKLRR---------------DRIIVVL-EQKIFVYNFADL----KLLHQIET  212 (298)
Q Consensus       156 ~~v~iWD~~~~~~--~~~~-~~~~~v~~v~~~~---------------~~l~v~~-~~~I~iwd~~~~----~~i~~~~~  212 (298)
                      ++|++||++++..  ...+ .+...|.++.|++               ..++++. ++.|++||+++.    +.+.++..
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  202 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence            9999999988732  2222 3456899999987               3455555 589999999765    56677777


Q ss_pred             cCCCcceEEEEeCCC-CeEEEEecCCCceEEEEEcCCcc------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEE
Q 022387          213 IANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (298)
Q Consensus       213 ~~~~~~~~~~s~~~d-~~~la~sGs~dg~v~i~~~~~~~------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrI  285 (298)
                      |..++..++++++.. +.+++ +|+.||.|++|+.....      ......|...|++++|+|+|++||+|+.||. |+|
T Consensus       203 h~~~V~~l~~sp~~~~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~-I~v  280 (753)
T 3jro_A          203 HSDWVRDVAWSPTVLLRSYLA-SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK-VTL  280 (753)
T ss_dssp             CSSCEEEEEECCCCSSSEEEE-EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC-EEC
T ss_pred             CCCcEEEEEeccCCCCCCEEE-EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE-EEE
Confidence            877776676666511 47777 49999999999998752      2345668999999999999999999999999 999


Q ss_pred             EECCCCc
Q 022387          286 FNTLDGT  292 (298)
Q Consensus       286 Wd~~tg~  292 (298)
                      ||+.++.
T Consensus       281 wd~~~~~  287 (753)
T 3jro_A          281 WKENLEG  287 (753)
T ss_dssp             CBCCSSS
T ss_pred             EecCCCC
Confidence            9998643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=2.2e-21  Score=179.75  Aligned_cols=196  Identities=15%  Similarity=0.206  Sum_probs=160.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..|...|.+++|+  +++|++|+.++ +++|++++.+....... |...+..+.+  +++.+++++       .|++|++
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~s~s-------~dg~i~~  223 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHL--HEKRVVSGS-------RDATLRV  223 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEE--ETTEEEEEE-------TTSEEEE
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEe--cCCEEEEEe-------CCCEEEE
Confidence            5678899999998  66899998765 88999999877655543 4555655554  567777777       6899999


Q ss_pred             EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      ||+.+++.+..+..+ ..|.++.++++.++++. ++.|++||+++++.+.++..|...+..+++    ++.+++ +|+.|
T Consensus       224 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~-~~~~d  298 (445)
T 2ovr_B          224 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF----DGIHVV-SGSLD  298 (445)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE----CSSEEE-EEETT
T ss_pred             EECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE----CCCEEE-EEeCC
Confidence            999999988887654 58999999888888876 589999999999999999888776655555    346676 48999


Q ss_pred             ceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          239 GQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       239 g~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.|++||..+.. +..+.+|...|.++++  ++++|++|+.||+ |+|||++++++++++
T Consensus       299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTL  355 (445)
T ss_dssp             SCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             CeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEE
Confidence            999999997665 4588999999999888  4679999999999 999999999988765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=2.1e-22  Score=184.59  Aligned_cols=198  Identities=14%  Similarity=0.045  Sum_probs=132.7

Q ss_pred             cCCCCCCeEEEEEcC--------CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCC-EEEEEeCCCC
Q 022387           81 SSSPPPTLLHISFNQ--------DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPD  150 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~--------dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  150 (298)
                      ..+|.+.|++|+|+|        ||++||+|++|+ ++|||+.+.+.+..... |...+..+.+.++.. .+++++    
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~----  206 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGE----  206 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEE----
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecC----
Confidence            357889999999998        899999999855 89999988766544433 577888888887654 566655    


Q ss_pred             CCCCCCeEEEEeCCCCcEEEEee--------------------------cCCceEEEEEe-C--CeEEEEE-CCeEEEEE
Q 022387          151 PQYPLNKVMIWDDHQSRCIGELS--------------------------FRSEVRSVKLR-R--DRIIVVL-EQKIFVYN  200 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~~~~--------------------------~~~~v~~v~~~-~--~~l~v~~-~~~I~iwd  200 (298)
                         .|++|++||+++++...+..                          +...+.++.|. +  ..++.+. ++++++||
T Consensus       207 ---~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          207 ---RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             ---TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             ---CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence               68999999998876543321                          12356677775 3  3444444 58999999


Q ss_pred             cCCCeEEEEEeccCCCc------------------ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccce
Q 022387          201 FADLKLLHQIETIANPK------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRI  261 (298)
Q Consensus       201 ~~~~~~i~~~~~~~~~~------------------~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V  261 (298)
                      +...+....+..+...+                  ..+.+++..++.+++ +|+.||.|++||..... ...+..|..+|
T Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V  362 (393)
T 4gq1_A          284 LFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT-AHSQHGLIQLINTYEKDSNSIPIQLGMPI  362 (393)
T ss_dssp             C-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE-EETTTTEEEEEETTCTTCCEEEEECSSCE
T ss_pred             CccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE-EECCCCEEEEEECCCCcEEEEecCCCCcE
Confidence            98776655554332211                  122344444555555 69999999999998764 44678899999


Q ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          262 ACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       262 ~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ++|+|||||++||++++||  +.||++.
T Consensus       363 ~svafspdG~~LA~as~~G--v~lvrL~  388 (393)
T 4gq1_A          363 VDFCWHQDGSHLAIATEGS--VLLTRLM  388 (393)
T ss_dssp             EEEEECTTSSEEEEEESSE--EEEEEEG
T ss_pred             EEEEEcCCCCEEEEEeCCC--eEEEEEe
Confidence            9999999999999999765  5577653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=1.7e-21  Score=179.67  Aligned_cols=198  Identities=16%  Similarity=0.147  Sum_probs=159.8

Q ss_pred             eEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ++.|+||++ ++||+|.++.|+|||..+++......+. |...|..+.|++++..+++++       .|++|+|||++++
T Consensus       108 ~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs-------~Dg~v~iWd~~~~  179 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQQ  179 (420)
T ss_dssp             CBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTT
T ss_pred             ceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE-------CCCeEEEEEcCCC
Confidence            567999975 5899999999999999998876555542 455689999999999998887       7899999999999


Q ss_pred             cEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE
Q 022387          167 RCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (298)
Q Consensus       167 ~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i  243 (298)
                      +.+..+..+ ..+.++.+++..++++. ++.+++||... ...+.++..|...+..+.  ..+++.+++ +|+.||.|++
T Consensus       180 ~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~--~~~~g~~l~-s~~~D~~v~i  256 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR--WAPDGRHLA-SGGNDNLVNV  256 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE--ECTTSSEEE-EEETTSCEEE
T ss_pred             cEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee--ecCCCCeee-eeeccccceE
Confidence            998888765 47899999998888876 48999999964 556677777766554444  455568888 4999999999


Q ss_pred             EEcCCcc-----eEeecccccceeEEEECCCC-CEEEEE--eCCCCEEEEEECCCCcEEEec
Q 022387          244 EHYASKR-----TKFIMAHDSRIACFALTQDG-QLLATS--STKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       244 ~~~~~~~-----~~~~~~H~~~V~~l~fspdg-~~lAt~--S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |+.....     +.....|...|.+++|+|++ .+||++  +.|++ |||||+.+++++..+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAV  317 (420)
T ss_dssp             EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEE
T ss_pred             EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceee
Confidence            9987543     34677899999999999975 566654  57999 999999999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=1.8e-22  Score=186.05  Aligned_cols=197  Identities=8%  Similarity=0.043  Sum_probs=145.9

Q ss_pred             CCeEEEEEcCCC--CEEEEEcCCe-EEEEEcCCCceEE---------------------------------------EEe
Q 022387           86 PTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFREIF---------------------------------------RRD  123 (298)
Q Consensus        86 ~~V~~v~fs~dg--~~lasgs~~g-i~vw~~~~~~~~~---------------------------------------~~~  123 (298)
                      ..|++++|+|++  .+|++|+.++ ++||++.......                                       ...
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            789999999998  7888888755 8899987633210                                       111


Q ss_pred             eecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC-CcEEEEe--------ecCCceEEEEEeCCe---EEEE
Q 022387          124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGEL--------SFRSEVRSVKLRRDR---IIVV  191 (298)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~-~~~~~~~--------~~~~~v~~v~~~~~~---l~v~  191 (298)
                      ..|...+..+.+.+++..++++        .|++|++||+++ ++.+..+        .+...|.++.|+++.   ++++
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA--------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE--------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe--------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence            1167778888998888877764        269999999994 4444432        234579999999753   5555


Q ss_pred             E-CCeEEEEEcCCCeE----EEEEeccCC------------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-c-ceE
Q 022387          192 L-EQKIFVYNFADLKL----LHQIETIAN------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K-RTK  252 (298)
Q Consensus       192 ~-~~~I~iwd~~~~~~----i~~~~~~~~------------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~-~~~  252 (298)
                      . ++.|++||+++++.    +..+..|..            .+..++  +++++.+|++ |+. |.|++||+.. . .+.
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~g~~l~~-~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK--FSHSGRYMMT-RDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE--ECTTSSEEEE-EES-SEEEEEETTCCSSCSC
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE--ECCCCCEEEE-eeC-CeEEEEeCCCCccccc
Confidence            4 58999999998876    677777654            444444  4556688885 666 9999999975 3 455


Q ss_pred             eecccccc---------------eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          253 FIMAHDSR---------------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       253 ~~~~H~~~---------------V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      .+.+|...               +..++|+|+|++||+|+.||+ |+|||+.+++++.
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-v~iwd~~~~~~~~  378 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-FRMFDRNTKRDIT  378 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-EEEEETTTCCEEE
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE-EEEEEcCCCccee
Confidence            78888643               334999999999999999999 9999999998763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2e-21  Score=180.69  Aligned_cols=197  Identities=8%  Similarity=0.041  Sum_probs=152.4

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEcC-CeEEEEEcC--CCceEEEEee-ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           83 SPPPTLLHISFNQDHGCF-AAGTD-HGFRIYNCD--PFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~l-asgs~-~gi~vw~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      .|...|++++|+|||++| |+|+. +.++||++.  ..+.+..... .+...+..+.+.+++..+++++       .++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------~~g~  172 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-------KFGD  172 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------TTSE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-------CCCc
Confidence            455689999999999996 88877 458899998  6655444321 1457788899999998888887       6799


Q ss_pred             EEEEeCCCCcEEE----Eee-cCCceEEEEEeCC-----eEEEEE-CCeEEEEEcCCCeEEEEE-eccCCCcceEEEEeC
Q 022387          158 VMIWDDHQSRCIG----ELS-FRSEVRSVKLRRD-----RIIVVL-EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQG  225 (298)
Q Consensus       158 v~iWD~~~~~~~~----~~~-~~~~v~~v~~~~~-----~l~v~~-~~~I~iwd~~~~~~i~~~-~~~~~~~~~~~~s~~  225 (298)
                      |++||+.+++...    .+. +...|.++.|+++     .++++. ++.|++||+.+++.+..+ ..|...+..++|+  
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--  250 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--  250 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--
Confidence            9999998776442    333 4468999999987     444444 479999999988888774 4677777777777  


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcce-Eeecc-------------------------cccceeEEEECCCCCEEEEEe-C
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA-------------------------HDSRIACFALTQDGQLLATSS-T  278 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~-------------------------H~~~V~~l~fspdg~~lAt~S-~  278 (298)
                       ++.+|+ +|+.||.|++||+.+... ..+..                         +...|.+|+|+|++++|++++ .
T Consensus       251 -d~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          251 -KDYLLL-SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             -STTEEE-EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCEEE-EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence             457787 489999999999987653 34442                         235799999999999999999 8


Q ss_pred             CCCEEEEEEC--CCC
Q 022387          279 KGTLVRIFNT--LDG  291 (298)
Q Consensus       279 Dgt~IrIWd~--~tg  291 (298)
                      |+. |+||++  .++
T Consensus       329 d~~-i~iw~~~~~~~  342 (450)
T 2vdu_B          329 TKC-IIILEMSEKQK  342 (450)
T ss_dssp             CSE-EEEEEECSSST
T ss_pred             CCe-EEEEEeccCCC
Confidence            888 999999  665

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.7e-22  Score=181.36  Aligned_cols=187  Identities=12%  Similarity=0.069  Sum_probs=136.3

Q ss_pred             EEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC------
Q 022387           92 SFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------  164 (298)
Q Consensus        92 ~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~------  164 (298)
                      .+.+|+.+|++|+.|| +++||+++.+.+.....   +.+..+.  +.+. ++.++       .|++|++|+..      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---~~v~~~~--~~~~-~~s~s-------~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITT---PNPRTGG--EHPA-IISRG-------PCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE---ECCCTTC--CCCS-EEEEC-------STTEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEec---CCceeee--eCCc-eEEec-------CCCeEEEEEccCceEEe
Confidence            4456888999999866 88999998876555442   2233222  2333 44444       67999999655      


Q ss_pred             ---CCcEEEEeec--CCceEEEEEeC--C--eEEEEE-CCeEEEEEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEE
Q 022387          165 ---QSRCIGELSF--RSEVRSVKLRR--D--RIIVVL-EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       165 ---~~~~~~~~~~--~~~v~~v~~~~--~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~  233 (298)
                         +++.+..+..  ...|.++.+++  +  .++++. +++|++||+++++.+..+..+ ...+.+++++  +++.++| 
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~--pdg~~la-  186 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH--KDSLLLA-  186 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC--TTSCEEE-
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC--CCCCEEE-
Confidence               5555555543  35799999987  3  444444 589999999999887666443 3345555554  5568888 


Q ss_pred             ecCCCceEEEEEcCCcce--Eeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          234 PGLQKGQVRVEHYASKRT--KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~--~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +|+.||.|++||+.....  ..+.. |...|++|+|+|+|++||+++ |++ |+|||+++++++++
T Consensus       187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGTLA  250 (343)
T ss_dssp             EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTCBS
T ss_pred             EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCccee
Confidence            499999999999987653  47887 999999999999999999999 558 99999999877543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.1e-21  Score=182.55  Aligned_cols=188  Identities=9%  Similarity=0.062  Sum_probs=149.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCC-----ceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGG-----GIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      .+...|.+|+|||||++||+++.+| ++||+.+.  .+....  |..     .+..+++++++..+++++       .||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs-------~DG  151 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGN-------EDG  151 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEE-------TTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEc-------CCC
Confidence            4467899999999999999999866 88999554  222222  232     488999999999999998       789


Q ss_pred             eEEEEeCCCCc-------EEEEeec-----CCceEEEEEeCCeEEEEE-CCeEEEEEcCCCe---EEEEEe-ccCCCcce
Q 022387          157 KVMIWDDHQSR-------CIGELSF-----RSEVRSVKLRRDRIIVVL-EQKIFVYNFADLK---LLHQIE-TIANPKGL  219 (298)
Q Consensus       157 ~v~iWD~~~~~-------~~~~~~~-----~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~---~i~~~~-~~~~~~~~  219 (298)
                      +|+|||+.++.       .+.++..     ...|.+++|+++.++++. +++|++||+.+.+   ..++++ .|...+..
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            99999999875       2555532     248999999999844444 5899999997766   345674 67677888


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeec-ccccceeEEEE--CCCCCEEEEEeCCCCEEEEEECC
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~-~H~~~V~~l~f--spdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ++|+  +  ..+|+ ++ +|.|++|+........+. +|.+.|+.|+|  +||++.||++++||+  |||...
T Consensus       232 vaFs--g--~~LAS-a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d  296 (588)
T 2j04_A          232 LKIV--D--YKVVL-TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLED  296 (588)
T ss_dssp             EEEE--T--TEEEE-EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESS
T ss_pred             EEEE--C--CEEEE-Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeec
Confidence            8888  2  67775 44 599999999988775444 89999999999  999999999999997  999976

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=1.5e-21  Score=176.50  Aligned_cols=188  Identities=12%  Similarity=0.094  Sum_probs=142.9

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .+..+++.+++++++ +|+. +.++|||..+.+.+....+  ...+..+.+  +.+.++++.        ++.|++||+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~--~~~v~~v~~--~~~~~~~~~--------~~~i~i~d~~  127 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV--DAPVKDLFL--SREFIVVSY--------GDVISVFKFG  127 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC--SSCEEEEEE--CSSEEEEEE--------TTEEEEEESS
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC--CCceEEEEE--cCCEEEEEE--------cCEEEEEECC
Confidence            477788999888875 4555 5689999999888776664  555555554  455666654        5789999999


Q ss_pred             CC-cEEEEeecCCceEEEEEeCCeEEEE---ECCeEEEEEcCCCe---------------E-EEEEeccCCCcceEEEEe
Q 022387          165 QS-RCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK---------------L-LHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       165 ~~-~~~~~~~~~~~v~~v~~~~~~l~v~---~~~~I~iwd~~~~~---------------~-i~~~~~~~~~~~~~~~s~  224 (298)
                      ++ +.+..+..  ....+++++..++++   .++.|++||+.+++               + +..+..|...+..++|++
T Consensus       128 ~~~~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~  205 (355)
T 3vu4_A          128 NPWKRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR  205 (355)
T ss_dssp             TTCCBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred             CCceeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence            87 66555544  333455666777765   24899999998765               2 677888888777777766


Q ss_pred             CCCCeEEEEecCCCce-EEEEEcCCcc-eEeec-c-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          225 GVGSLVLVCPGLQKGQ-VRVEHYASKR-TKFIM-A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~-v~i~~~~~~~-~~~~~-~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                        ++.+|| +|+.||+ |++||..+.. +.++. + |...|++|+|+|||++||++|.|++ |+|||++++.
T Consensus       206 --~g~~l~-s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~  273 (355)
T 3vu4_A          206 --KSDMVA-TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQ  273 (355)
T ss_dssp             --TSSEEE-EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCS
T ss_pred             --CCCEEE-EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCC
Confidence              458888 5999998 9999998665 45777 5 9999999999999999999999999 9999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.89  E-value=4e-22  Score=184.80  Aligned_cols=203  Identities=11%  Similarity=0.079  Sum_probs=120.5

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|++|+|+| |+.+|++|+.|+ |+|||++........... +...+..+.+.+++..+++++       .|++|
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------~dg~i  233 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-------NVGNV  233 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-------SSSBE
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-------CCCcE
Confidence            56888999999998 789999999866 899999875443322210 122345566777777777665       45667


Q ss_pred             EEEeCCCCcEEEEee-cCCc----------------------------------------------eEEEEEeCC--eEE
Q 022387          159 MIWDDHQSRCIGELS-FRSE----------------------------------------------VRSVKLRRD--RII  189 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~-~~~~----------------------------------------------v~~v~~~~~--~l~  189 (298)
                      ++||++... +..+. +...                                              |.+++|+++  .++
T Consensus       234 ~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~  312 (435)
T 4e54_B          234 ILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL  312 (435)
T ss_dssp             EEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred             eeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence            777764322 22222 1223                                              444444432  233


Q ss_pred             EEE-CCeEEEEEcCCCeEEEEEeccCCC----cceEEEEeCCCCeEEEE-----------ecCCCceEEEEEcCCcceE-
Q 022387          190 VVL-EQKIFVYNFADLKLLHQIETIANP----KGLCAVSQGVGSLVLVC-----------PGLQKGQVRVEHYASKRTK-  252 (298)
Q Consensus       190 v~~-~~~I~iwd~~~~~~i~~~~~~~~~----~~~~~~s~~~d~~~la~-----------sGs~dg~v~i~~~~~~~~~-  252 (298)
                      ++. ++.|++||+.+++....+..|...    ...+...+++++.++++           ++..++.|++|+..++.+. 
T Consensus       313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~  392 (435)
T 4e54_B          313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC  392 (435)
T ss_dssp             EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred             EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence            322 355666666555554444433211    11111112222233332           2345568999999876644 


Q ss_pred             e-ecccccceeEE-EECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          253 F-IMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       253 ~-~~~H~~~V~~l-~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      . ...|...|.++ +|||+|++||+|+ |++ |+|||+++|+..
T Consensus       393 ~l~~~~~~~v~s~~~fspdg~~lasg~-d~~-i~iW~~~~gk~r  434 (435)
T 4e54_B          393 QLYDPESSGISSLNEFNPMGDTLASAM-GYH-ILIWSQQEARTR  434 (435)
T ss_dssp             EECCSSCCCCCCEEEECTTSSCEEEEC-SSE-EEECCCC-----
T ss_pred             EEeCCCCCcEEEEEEECCCCCEEEEEc-CCc-EEEEECCcCeee
Confidence            4 45788899988 6999999999987 888 999999999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=5.8e-22  Score=181.31  Aligned_cols=200  Identities=7%  Similarity=0.042  Sum_probs=152.7

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEe-eecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|.+++|+|++ .+|++|+.++ ++|||+.+.+...... ..|...+..+.+.+++..+++++       .|++|
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i  200 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC-------RDKRV  200 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE-------TTSEE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe-------cCCcE
Confidence            4678899999999998 6999998765 8899999987766652 11577889999999998888887       68999


Q ss_pred             EEEeCCCCcEEEEe-ecC-C-ceEEEEEeCCe--EEEE----ECCeEEEEEcCCCeE-EEEEe-ccCCCcceEEEEeCCC
Q 022387          159 MIWDDHQSRCIGEL-SFR-S-EVRSVKLRRDR--IIVV----LEQKIFVYNFADLKL-LHQIE-TIANPKGLCAVSQGVG  227 (298)
Q Consensus       159 ~iWD~~~~~~~~~~-~~~-~-~v~~v~~~~~~--l~v~----~~~~I~iwd~~~~~~-i~~~~-~~~~~~~~~~~s~~~d  227 (298)
                      ++||+++++.+..+ ..+ . .+.++.|+++.  ++++    .++.|++||+++.+. +.... .+...+..++++  ++
T Consensus       201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~  278 (402)
T 2aq5_A          201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD--PD  278 (402)
T ss_dssp             EEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE--TT
T ss_pred             EEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEc--CC
Confidence            99999999988887 343 3 37889998754  3333    257999999987654 33333 233444444554  45


Q ss_pred             CeEEEEecCCCceEEEEEcCCcc--eEeecc--cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKR--TKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~--~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      +.+++++|+.||.|++|++....  +..+..  |...|++++|+|++.++++  .|+. +++|++.++++
T Consensus       279 ~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~-~~~~~l~~~~~  345 (402)
T 2aq5_A          279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI-ARFYKLHERKC  345 (402)
T ss_dssp             TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE-EEEEEEETTEE
T ss_pred             CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee-EEEEEcCCCcE
Confidence            57776668899999999998765  445554  4589999999999999886  4667 99999998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=4.1e-20  Score=167.63  Aligned_cols=200  Identities=10%  Similarity=0.073  Sum_probs=159.9

Q ss_pred             CCeEEEEEcCCCCEE-EEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCF-AAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~l-asgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+.+++|+|||++| ++++. +.+++||..+.+.......  .+.+..+.+++++..+++++.      .+++|++||+
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~------~~~~v~v~d~  103 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDT  103 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET------TTTEEEEEET
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEEC------CCCEEEEEEC
Confidence            368999999999976 56655 5689999999887666654  557888889888888777663      4589999999


Q ss_pred             CCCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          164 HQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      .+++.+..+..+..+.++.|+++  .++++.  ++.|++||+.+++.+..+..+..+   ..+.+++++..++++++.+|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP---KGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE---EEEEECTTSSEEEEEETTTT
T ss_pred             CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc---ceEEECCCCCEEEEEeCCCC
Confidence            99999888888888999999875  454443  489999999999998888776443   34444555566655688999


Q ss_pred             eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEe---CCCCEEEEEECCCCcEEEec
Q 022387          240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       240 ~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S---~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .|++||...........|...+.+++|+|+|++|++++   .|+. |++||+.++++++.+
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARI  240 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEE
Confidence            99999998876655455677899999999999999988   6888 999999999887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=3.7e-21  Score=183.85  Aligned_cols=188  Identities=12%  Similarity=0.036  Sum_probs=135.3

Q ss_pred             EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC-CCeEEEEeCCCCcE
Q 022387           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP-LNKVMIWDDHQSRC  168 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~iWD~~~~~~  168 (298)
                      +++|+|+|.+++++.++.+++|++...+.+....  +...+..+.+.  +..+++++       . |+.|++||+.+++.
T Consensus       411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~l~~~~-------~~d~~i~~~~~~~~~~  479 (615)
T 1pgu_A          411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS--QNYVAVGL-------EEGNTIQVFKLSDLEV  479 (615)
T ss_dssp             EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC--SSEEEEEE-------TTTSCEEEEETTEEEE
T ss_pred             EEEEcCCCCEEEEeCCCceEEEeccCCceeeecc--cCCCceEEEEc--CCEEEEee-------cCCCeEEEEECCCccc
Confidence            3333333333333333334444443444433333  35666666666  67777776       5 79999999998766


Q ss_pred             E-EEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCC--------CCeEEEEe
Q 022387          169 I-GELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGV--------GSLVLVCP  234 (298)
Q Consensus       169 ~-~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~--------d~~~la~s  234 (298)
                      . ..+. +...|.++.|+++  .++++. ++.|++||+.+++.+.++.. |...+..+++++..        ++.+|| +
T Consensus       480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~-~  558 (615)
T 1pgu_A          480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-T  558 (615)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE-E
T ss_pred             cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEE-E
Confidence            4 3333 3458999999875  455554 58999999999999988877 77777777776611        558888 4


Q ss_pred             cCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          235 GLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      |+.||.|++|++...  .+..+.+|...|++|+|+|+|+ |++++.||+ |+|||+.++
T Consensus       559 ~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~-v~iw~~~~~  615 (615)
T 1pgu_A          559 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADAC-IKRWNVVLE  615 (615)
T ss_dssp             EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSC-EEEEEEC--
T ss_pred             EcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCce-EEEEeeecC
Confidence            999999999999874  5668999999999999999999 999999999 999998753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=1e-19  Score=167.23  Aligned_cols=204  Identities=13%  Similarity=0.119  Sum_probs=160.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .|...|.+++|+++|+++++++. +.+++|++++.+....... |...+..+.+.+++..+++++.      .+++|++|
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~------~~~~i~~~  239 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNW------ISEDISVI  239 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEec------CCCcEEEE
Confidence            56678999999999999999987 5588999998877655543 4667888889888887766653      46899999


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCC--eEEEEE---------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~---------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      |+++++.+..+.....+.++.++++  .++++.         ++.|++||+.+++.+..+... .....++  +++++..
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~--~~~~g~~  316 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-GNKRHIV--SGNTENK  316 (433)
T ss_dssp             ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-ECEEEEE--ECSSTTE
T ss_pred             ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-CCcceEE--ECCCCCE
Confidence            9999998888888778999999875  455554         469999999998887776432 2233444  4555555


Q ss_pred             EEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC---------------CCCEEEEEECCCCcEEE
Q 022387          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---------------KGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~---------------Dgt~IrIWd~~tg~~l~  295 (298)
                      ++++++.++.|.+|+...........|...+.+++|+|+|++|++++.               ||. |++||+.+++++.
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~~  395 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVKE  395 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEEE
Confidence            555689999999999987765544457888999999999999998877               568 9999999998876


Q ss_pred             ec
Q 022387          296 EG  297 (298)
Q Consensus       296 ~~  297 (298)
                      .+
T Consensus       396 ~~  397 (433)
T 3bws_A          396 FW  397 (433)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.87  E-value=4.5e-19  Score=160.74  Aligned_cols=199  Identities=12%  Similarity=0.066  Sum_probs=153.5

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..|.+++|+|||++|+ ++++ +.+++||+.+.+.......  ...+..+.+.+++..+++++.      .++.|++||+
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~  145 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNN------GDKTVSVINT  145 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET------TTTEEEEEET
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeC------CCCEEEEEEC
Confidence            3899999999999875 4545 5588999998877655553  567788888888887765553      4689999999


Q ss_pred             CCCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC--C
Q 022387          164 HQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL--Q  237 (298)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs--~  237 (298)
                      .+++.+..+..+..+..+.|+++  .++++.  ++.|++||+++++.+..+..+.   ....+.+++++.++++++.  .
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~  222 (391)
T 1l0q_A          146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---APSGIAVNPEGTKAYVTNVDKY  222 (391)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---EEEEEEECTTSSEEEEEEECSS
T ss_pred             CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC---CccceEECCCCCEEEEEecCcC
Confidence            99999888888888899999875  354443  4799999999998887776432   2334445556676665343  7


Q ss_pred             CceEEEEEcCCcce-EeecccccceeEEEECCCCCEE-EEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++.|.+||...... ..+..|. .+.+++|+|+|++| ++++.|++ |+|||+.++++++++
T Consensus       223 ~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~-v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          223 FNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNT-VSVIDTATNTITATM  282 (391)
T ss_dssp             CCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred             CCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCE-EEEEECCCCcEEEEE
Confidence            89999999987654 4566554 58999999999877 77788998 999999999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2e-20  Score=167.80  Aligned_cols=196  Identities=8%  Similarity=0.080  Sum_probs=145.4

Q ss_pred             CCCCCCeEEEEEcC--CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        82 ~~~~~~V~~v~fs~--dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..|...|.+++|+|  ++++|++|+.++ +++||+.+.+........+...+..+.+.+++..+++++       .|++|
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~-------~dg~i  194 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS-------PDGIL  194 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC-------TTSCE
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc-------CCCEE
Confidence            45567899999999  999999999865 899999988775444322345688888888888887776       68999


Q ss_pred             EEEeCCCCcEE-EEeec--CCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEec---cCCCcceEEEEeCCCCeE
Q 022387          159 MIWDDHQSRCI-GELSF--RSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       159 ~iWD~~~~~~~-~~~~~--~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~---~~~~~~~~~~s~~~d~~~  230 (298)
                      ++||+++++.+ ..+..  ...|.++.|+++  .++++.++.|++||+++.+.++++..   +...+...++++++++.+
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (343)
T 3lrv_A          195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN  274 (343)
T ss_dssp             EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred             EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence            99999998876 66665  568999999875  56666778999999998876655543   222333234666677789


Q ss_pred             EEEecCC-CceEEEEEcCCcc-eEeecccccceeEEEECC---CCCEEEEEeCCCCEEEEEECCC
Q 022387          231 LVCPGLQ-KGQVRVEHYASKR-TKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       231 la~sGs~-dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fsp---dg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      |++ |+. |+.|++|++.... ....    .++..++|++   +++.|++++.||+ ++++-...
T Consensus       275 l~~-~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~-~~~~~~~~  333 (343)
T 3lrv_A          275 MIA-YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGG-IAAILKTN  333 (343)
T ss_dssp             EEE-EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTE-EEEEEECS
T ss_pred             EEE-ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCc-eEEEEecC
Confidence            986 555 9999999986543 2222    6788999999   9999999999999 88876443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5e-21  Score=181.16  Aligned_cols=190  Identities=9%  Similarity=0.053  Sum_probs=140.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCe-EE-----------------E----------EEcCCCceEEEEeeecCCceEEEEEec
Q 022387           86 PTLLHISFNQDHGCFAAGTDHG-FR-----------------I----------YNCDPFREIFRRDFERGGGIGVVEMLF  137 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~g-i~-----------------v----------w~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (298)
                      ..|.+|+|+|||++||+|+.|+ ++                 |          |++.+.+......+.|...+..+.+++
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSP   95 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSP   95 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECS
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECC
Confidence            5789999999999999999876 52                 1          112211111111111456788999999


Q ss_pred             CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-----ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCe----
Q 022387          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-----EVRSVKLRRD--RIIVVL-EQKIFVYNFADLK----  205 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-----~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~----  205 (298)
                      ++..+|+++       .|++|+|||.+.  ++..+.++.     .|.+++|+++  .+++++ +++|++||+.+++    
T Consensus        96 dG~~LAs~s-------~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           96 IDDWMAVLS-------NNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             SSSCEEEEE-------TTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             CCCEEEEEe-------CCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            999999988       789999999655  555566322     4999999985  566666 5899999998765    


Q ss_pred             ---EEEEEe----ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce----Eee-cccccceeEEEECCCCCEE
Q 022387          206 ---LLHQIE----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFI-MAHDSRIACFALTQDGQLL  273 (298)
Q Consensus       206 ---~i~~~~----~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~----~~~-~~H~~~V~~l~fspdg~~l  273 (298)
                         .+.+++    +|...+..+++++  |+  ++ +++.|+.|++|+...+..    .++ .+|...|.+|+|+  |+.|
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSP--dg--La-ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~L  239 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYE--DV--LV-AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKV  239 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEET--TE--EE-EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEE
T ss_pred             cceeeeeeecccccccccEEEEEEcC--Cc--EE-EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEE
Confidence               367774    3445666666665  55  44 367899999999987663    246 4888999999999  6999


Q ss_pred             EEEeCCCCEEEEEECCCCcE
Q 022387          274 ATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       274 At~S~Dgt~IrIWd~~tg~~  293 (298)
                      |+++ |++ |+|||+.+++.
T Consensus       240 ASa~-~~t-IkLWd~~~~~~  257 (588)
T 2j04_A          240 VLTC-PGY-VHKIDLKNYSI  257 (588)
T ss_dssp             EEEC-SSE-EEEEETTTTEE
T ss_pred             EEEe-CCe-EEEEECCCCeE
Confidence            9998 688 99999998877

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.86  E-value=2.1e-20  Score=171.26  Aligned_cols=203  Identities=13%  Similarity=0.034  Sum_probs=125.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeee----cCCceEEEEEec--------CCCEEEEEeCCCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE----RGGGIGVVEMLF--------RCNILALVGGGPD  150 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~~~  150 (298)
                      +...+....+++++.+||+|+.| +++||+.+.........+.    |.+.+..+.+++        ++..++.++    
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s----  163 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG----  163 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE----
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE----
Confidence            33455566677788999999975 5999999887654333221    677888888875        456677776    


Q ss_pred             CCCCCCeEEEEeCCCCcEEE-EeecCCceEEEEEeCCe---EEEEE-CCeEEEEEcCCCeEEEEEe--------------
Q 022387          151 PQYPLNKVMIWDDHQSRCIG-ELSFRSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIE--------------  211 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~-~~~~~~~v~~v~~~~~~---l~v~~-~~~I~iwd~~~~~~i~~~~--------------  211 (298)
                         .|++|+|||++++..+. .+.++..|.+++|+++.   ++++. +++|++||+++++...+..              
T Consensus       164 ---~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          164 ---DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             ---TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             ---CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence               78999999998776544 45677899999999853   44443 5899999998776544332              


Q ss_pred             -----------ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECC-----------
Q 022387          212 -----------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQ-----------  268 (298)
Q Consensus       212 -----------~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fsp-----------  268 (298)
                                 .|...+..+.+. .+++..++ +++.|+.+++|++...+. ..+..|...+..++++|           
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~-s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWI-GSDGSGIL-AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL  318 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEE-TTTTCEEE-EECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred             cccceeeeecccccccceeeeee-cCCCCEEE-EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence                       223333444443 24557777 489999999999876542 24445554444443333           


Q ss_pred             ---------CCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          269 ---------DGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       269 ---------dg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                               ++.++|+|+.||+ |+|||+.+++++..
T Consensus       319 ~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~  354 (393)
T 4gq1_A          319 LGACPHPRYMDYFATAHSQHGL-IQLINTYEKDSNSI  354 (393)
T ss_dssp             SCCEECSSCTTEEEEEETTTTE-EEEEETTCTTCCEE
T ss_pred             eeEEEccCCCCEEEEEECCCCE-EEEEECCCCcEEEE
Confidence                     3457788899999 99999999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.3e-19  Score=181.04  Aligned_cols=202  Identities=13%  Similarity=0.143  Sum_probs=153.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc--------------------------------------------
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--------------------------------------------  117 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~--------------------------------------------  117 (298)
                      .|...|++|+|+|||++||+|+.|+ |+||++++.+                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            6777999999999999999999865 8999987652                                            


Q ss_pred             -eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE--e-----ecCCceEEEEEe-----
Q 022387          118 -EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L-----SFRSEVRSVKLR-----  184 (298)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~--~-----~~~~~v~~v~~~-----  184 (298)
                       .+..... |.+.+..+++++++ .+|+++       .|++|+|||++++..+..  +     .+...|.+++|+     
T Consensus       566 ~~~~~l~~-h~~~V~svafSpdG-~lAsgs-------~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~  636 (902)
T 2oaj_A          566 MPSTAVHA-NKGKTSAINNSNIG-FVGIAY-------AAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG  636 (902)
T ss_dssp             EEEEEECC-CSCSEEEEEECBTS-EEEEEE-------TTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred             ceeEEEEc-CCCcEEEEEecCCc-EEEEEe-------CCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC
Confidence             1222222 67889999999888 888877       789999999988776542  2     233469999999     


Q ss_pred             CC-----eEEEEE-CCeEEEEEc---CCCeEEEEEeccC-----CCcceEE-EEeC--------------------CCCe
Q 022387          185 RD-----RIIVVL-EQKIFVYNF---ADLKLLHQIETIA-----NPKGLCA-VSQG--------------------VGSL  229 (298)
Q Consensus       185 ~~-----~l~v~~-~~~I~iwd~---~~~~~i~~~~~~~-----~~~~~~~-~s~~--------------------~d~~  229 (298)
                      ++     .+++++ +++|++||+   .+++...++..|.     .++..++ |+.+                    +++.
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  716 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI  716 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred             CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence            76     355554 589999999   7888888887663     4444333 4411                    4556


Q ss_pred             EEEEecCCCceEEEEEcCCcc-eEeecccccceeEE---E------ECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACF---A------LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l---~------fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +||+ +  +..|+||+..+.+ ......|...+.+|   .      |+++|..||+++.||+ |+||++.++++++++
T Consensus       717 ~l~~-~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~-i~~~s~p~l~~~~~~  790 (902)
T 2oaj_A          717 VLIT-G--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGH-LRVFTIPDFKEQMSE  790 (902)
T ss_dssp             EEEE-C--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEEE-e--ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCc-EEEEECcchHHHhhc
Confidence            7764 3  7789999998754 33555666667776   6      7899999999999999 999999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.83  E-value=5.9e-19  Score=155.47  Aligned_cols=157  Identities=14%  Similarity=0.126  Sum_probs=125.3

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc----EEEEee-cCCceEEEEEeC----CeEEEEE-CCe
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRR----DRIIVVL-EQK  195 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~----~~~~~~-~~~~v~~v~~~~----~~l~v~~-~~~  195 (298)
                      |.+.+..+.+.+++..+++++       .|++|++||+.++.    .+..+. +...|.++.|++    ..++++. ++.
T Consensus        10 H~~~v~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGRHVATCS-------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE-------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccceeEEEEcCCCCEEEEee-------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            678899999999999888887       68999999998763    445555 446899999986    3455555 589


Q ss_pred             EEEEEcCCC---------eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----------------
Q 022387          196 IFVYNFADL---------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----------------  250 (298)
Q Consensus       196 I~iwd~~~~---------~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----------------  250 (298)
                      |++||+.++         +.+..+..|...+..++++++..+.++++ |+.||.|++||+....                
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhcccccccccccccc
Confidence            999999876         66778888877777777766522577774 8999999999975321                


Q ss_pred             ---------------------------------------------eEeecccccceeEEEECCCC----CEEEEEeCCCC
Q 022387          251 ---------------------------------------------TKFIMAHDSRIACFALTQDG----QLLATSSTKGT  281 (298)
Q Consensus       251 ---------------------------------------------~~~~~~H~~~V~~l~fspdg----~~lAt~S~Dgt  281 (298)
                                                                   ...+.+|...|++|+|+|++    ++||+|+.||+
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence                                                         33566899999999999998    89999999999


Q ss_pred             EEEEEECCCC
Q 022387          282 LVRIFNTLDG  291 (298)
Q Consensus       282 ~IrIWd~~tg  291 (298)
                       |+|||++++
T Consensus       242 -i~iwd~~~~  250 (351)
T 3f3f_A          242 -IRIFKITEK  250 (351)
T ss_dssp             -EEEEEEEEC
T ss_pred             -EEEEeCCCC
Confidence             999999876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.83  E-value=2e-18  Score=154.28  Aligned_cols=205  Identities=11%  Similarity=0.080  Sum_probs=130.9

Q ss_pred             CeEEEEEcCCCC---EEEEEcCCeEEEEEcCCC---ceEEEEeeecCCceEEEE-------------------------E
Q 022387           87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVE-------------------------M  135 (298)
Q Consensus        87 ~V~~v~fs~dg~---~lasgs~~gi~vw~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~  135 (298)
                      .|.++-|-.-|-   +|+++++..+++|+....   +..+++++ |+..+..+.                         +
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            466677765554   789999999999999887   66677776 333332222                         2


Q ss_pred             ecC----CCEEEEEeC---------CCC----CCCCCCeEEEEeCCC-CcEEEEeecC-CceEEEEEeC-----CeEEEE
Q 022387          136 LFR----CNILALVGG---------GPD----PQYPLNKVMIWDDHQ-SRCIGELSFR-SEVRSVKLRR-----DRIIVV  191 (298)
Q Consensus       136 ~~~----~~~~~~~~~---------~~~----~~~~d~~v~iWD~~~-~~~~~~~~~~-~~v~~v~~~~-----~~l~v~  191 (298)
                      +++    ...++..+.         +.-    ....|++|++|++.. ++.+..+..+ ..+..++|++     ..++.+
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence            222    222222110         000    001478889999854 6666665544 3566666655     455554


Q ss_pred             E-CCeEEEEEcCCCeEEEEEeccCCC-cce--EEEEeCCCCeEEE-----------EecCCCceEEEEEcCCcceE-ee-
Q 022387          192 L-EQKIFVYNFADLKLLHQIETIANP-KGL--CAVSQGVGSLVLV-----------CPGLQKGQVRVEHYASKRTK-FI-  254 (298)
Q Consensus       192 ~-~~~I~iwd~~~~~~i~~~~~~~~~-~~~--~~~s~~~d~~~la-----------~sGs~dg~v~i~~~~~~~~~-~~-  254 (298)
                      . |++|+|||+.++++++++..|... ..+  ++|+++  +.+++           ++|+.|++|++|+..+.... ++ 
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd--G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM--GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET--TEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC--CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence            4 689999999999999999865432 233  356664  46652           36899999999999877543 22 


Q ss_pred             ----cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          255 ----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       255 ----~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                          .+|...+.+..++  +.++|++|.|++ |||||+.+|++++++
T Consensus       278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT-IkIWDl~tGk~l~tL  321 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGT-IAIWDLLLGQCTALL  321 (356)
T ss_dssp             ECCCTTCCCCEEEEEEE--TTEEEEEETTSC-EEEEETTTCSEEEEE
T ss_pred             eeccCCCcceeEccccC--CCEEEEEcCCCc-EEEEECCCCcEEEEe
Confidence                4776665554444  889999999999 999999999999886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.83  E-value=4.1e-18  Score=156.44  Aligned_cols=201  Identities=14%  Similarity=0.075  Sum_probs=148.3

Q ss_pred             CCCCCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC-CCCeEE
Q 022387           83 SPPPTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY-PLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~  159 (298)
                      .+...+.+++|+|+|++|+ +++. +.+++||+.+.+.......  ...+..+.+.+++..+++++.+..... .|+.|+
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence            4667899999999999875 5545 5588999998876555442  455777788888888877764321111 378999


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +||+.+++.+..+.+...+.++.|+++.  ++++.  ++.|++||+.+++.+..+.. ......+++  ++++.++++++
T Consensus       287 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~--s~dg~~l~~~~  363 (433)
T 3bws_A          287 IYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV-FDKPNTIAL--SPDGKYLYVSC  363 (433)
T ss_dssp             EEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEE--CTTSSEEEEEE
T ss_pred             EEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC-CCCCCeEEE--cCCCCEEEEEe
Confidence            9999999888877776788899998753  55553  48999999999998888763 333344444  45556665533


Q ss_pred             CC--------------CceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeC-CCCEEEEEECCC
Q 022387          236 LQ--------------KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD  290 (298)
Q Consensus       236 s~--------------dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~t  290 (298)
                      ..              ||.|++|+..+.... .+.. ...+.+++|+|+|++|++++. |++ |+||++..
T Consensus       364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~-i~v~~~~~  432 (433)
T 3bws_A          364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ-IRVYRRDG  432 (433)
T ss_dssp             CCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTE-EEEEEETT
T ss_pred             cCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCe-EEEEEecC
Confidence            33              679999999876654 4444 567999999999999998875 898 99999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.81  E-value=2e-17  Score=152.79  Aligned_cols=199  Identities=12%  Similarity=0.022  Sum_probs=146.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC----eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~----gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .|...|.+++|+|||++||+++.+    .+++||+++.+......  +.+.+..+.+++++..+++++..+    .+..|
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~--~~~~~~~~~~spdg~~la~~~~~~----g~~~i  249 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKT----GSLNL  249 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEECTT----SSCEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec--CCCcccCEEEcCCCCEEEEEEecC----CCceE
Confidence            456789999999999999988864    58899999877643333  466788889999999888665322    23569


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      ++||+.+++......+...+.++.|+++  .+++..+  +  .|.+||+.+++. ..+..+...  ...+.+++++.+|+
T Consensus       250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~--~~~~~~spdG~~l~  326 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQ--NQDADVSSDGKFMV  326 (415)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSE--EEEEEECTTSSEEE
T ss_pred             EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCc--ccCeEECCCCCEEE
Confidence            9999999877544445567889999876  3555553  2  788889987764 334334333  33445555668887


Q ss_pred             EecCC--CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC---CEEEEEECCCCc
Q 022387          233 CPGLQ--KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGT  292 (298)
Q Consensus       233 ~sGs~--dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg---t~IrIWd~~tg~  292 (298)
                      +++..  ++.|.+|+..+.....+..|. .+.+++|+|||++|++++.|+   . |++||+..+.
T Consensus       327 ~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~-l~~~d~~g~~  389 (415)
T 2hqs_A          327 MVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDGRF  389 (415)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEE-EEEEETTSCC
T ss_pred             EEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccE-EEEEECCCCc
Confidence            64444  358888999888777777775 899999999999999999887   6 9999987543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=2.2e-16  Score=135.97  Aligned_cols=203  Identities=6%  Similarity=-0.089  Sum_probs=141.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCC-CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .|...|.+++|+|||++|++++++.+.+|++++ .+........+...+..+.+++++..+++++...+   ....|.+|
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~  115 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF---GKSAIYLL  115 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT---SSCEEEEE
T ss_pred             cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC---CcceEEEE
Confidence            345689999999999999999988899999988 65543322101245566788889988888773321   12344445


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCC--eEEEE--ECCeEEEEEc--CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVV--LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~--~~~~I~iwd~--~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      |..+++ ...+.....+..+.|+++  .+++.  .++.+++|++  .+.+ ...+..+...+  ..+.+++++..+++++
T Consensus       116 ~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~--~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          116 PSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRN--DGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             ETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCE--EEEEECTTSSEEEEEE
T ss_pred             ECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCcc--ccceECCCCCEEEEEe
Confidence            555554 344555556888899875  34433  3588889886  3333 34444444444  4444555667777656


Q ss_pred             CCCceEEEEEcC--CcceEeecccccceeEEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcE
Q 022387          236 LQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSSTK-----------GTLVRIFNTLDGTL  293 (298)
Q Consensus       236 s~dg~v~i~~~~--~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D-----------gt~IrIWd~~tg~~  293 (298)
                      ..++.+.+|++.  .+....+..|...+.+++|+|+|++||.++.|           +. |++||+.+++.
T Consensus       192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~  261 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNV  261 (297)
T ss_dssp             CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSC
T ss_pred             cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCc
Confidence            678899998764  45567788888999999999999999999876           45 99999998865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.75  E-value=4.8e-16  Score=148.51  Aligned_cols=194  Identities=12%  Similarity=0.095  Sum_probs=148.7

Q ss_pred             EEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC--CCCcE
Q 022387           92 SFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD--HQSRC  168 (298)
Q Consensus        92 ~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~--~~~~~  168 (298)
                      +|+|++.++++++. +.+.+||..+.+.+.+...  ...+..+.+++++..+++++       .+++|++||+  .++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~~~~~v~~spdg~~l~v~~-------~d~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIG-------RDARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--STTEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--CcccceEEECCCCCEEEEEC-------CCCeEEEEECcCCCCcE
Confidence            48999998998887 4588999999887766653  34477888899999998888       5699999999  88889


Q ss_pred             EEEeecCCceEEEEEeC----C--eEEEEE--CCeEEEEEcCCCeEEEEEeccC----------C-CcceEEEEeCCCCe
Q 022387          169 IGELSFRSEVRSVKLRR----D--RIIVVL--EQKIFVYNFADLKLLHQIETIA----------N-PKGLCAVSQGVGSL  229 (298)
Q Consensus       169 ~~~~~~~~~v~~v~~~~----~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~----------~-~~~~~~~s~~~d~~  229 (298)
                      +.++.....+..+.|++    +  .++++.  +++|.+||..++++++++..+.          . .+..+.+++  ++.
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~--~~~  292 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH--EHP  292 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS--SSS
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC--CCC
Confidence            88888777889999987    4  455554  5899999999999999887632          1 223344444  334


Q ss_pred             EEEEecCCCceEEEEEcCCcc-eE-eecccccceeEEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEec
Q 022387          230 VLVCPGLQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~-~~-~~~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .++++...+|.|.+|++.... +. ....+...+..++|+|||++|+++ ..|++ |+|||+.+|+++.++
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALV  362 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEee
Confidence            444468899999999987643 22 122466779999999999976655 45788 999999999988653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.75  E-value=1.5e-16  Score=139.43  Aligned_cols=148  Identities=16%  Similarity=0.274  Sum_probs=118.8

Q ss_pred             EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC---CceEEEEEeCC--eEEEEE-CCeEEEEEcCCC
Q 022387          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL  204 (298)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~---~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~  204 (298)
                      .++.|+.+ +.+|++        .|++|+|||+.+++++..+..+   ..|.++.|+++  .++++. +++|++||+.++
T Consensus        29 ~~l~WS~~-~~lAvg--------~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           29 NLVDWSSG-NVLAVA--------LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ   99 (318)
T ss_dssp             BCEEECTT-SEEEEE--------ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEECCC-CEEEEE--------eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence            45677754 455553        3699999999999998887643   36999999874  455554 589999999999


Q ss_pred             eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCE
Q 022387          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (298)
Q Consensus       205 ~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~  282 (298)
                      +.++++..|....  .+++.++  .+++ +|+.++.+++|+.....  +..+.+|...+.+++|+++|++|++++.|++ 
T Consensus       100 ~~~~~~~~h~~~~--~~~~~~~--~~l~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-  173 (318)
T 4ggc_A          100 KRLRNMTSHSARV--GSLSWNS--YILS-SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-  173 (318)
T ss_dssp             EEEEEEECCSSCE--EEEEEET--TEEE-EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             eeEEEecCccceE--EEeecCC--CEEE-EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc-
Confidence            9999999876654  4455554  5666 59999999998877643  4578899999999999999999999999999 


Q ss_pred             EEEEECCCCcE
Q 022387          283 VRIFNTLDGTL  293 (298)
Q Consensus       283 IrIWd~~tg~~  293 (298)
                      |+|||+++++.
T Consensus       174 i~iwd~~~~~~  184 (318)
T 4ggc_A          174 VNVWPSAPGEG  184 (318)
T ss_dssp             EEEEESSCBTT
T ss_pred             eeEEECCCCcc
Confidence            99999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.74  E-value=1.1e-15  Score=134.64  Aligned_cols=205  Identities=7%  Similarity=-0.018  Sum_probs=144.7

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecC----CceEEEEEecCCCEEEEEeCCC---CCCC--CC
Q 022387           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGGP---DPQY--PL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~--~d  155 (298)
                      .+.+++|+|||++|+ ++.. +.+.+||..+.+.+......+.    ..+..+.+.+++..++++..+.   ...+  .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            366799999998765 4444 4588999988876655543110    1445667788888777764110   0000  25


Q ss_pred             CeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccC--CCc--------------
Q 022387          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIA--NPK--------------  217 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~--~~~--------------  217 (298)
                      +.|.+||..+++.+..+.....+..+.|+++  .++++ ++.|.+||+.+++.+..+..+.  .+.              
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  193 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE  193 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCT
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeecc
Confidence            8899999999988888777667788889875  34444 7899999999888877665432  100              


Q ss_pred             ------------------------------------------------ceEEEEeCCCCeEEEEecCCCceEEEEEcCCc
Q 022387          218 ------------------------------------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (298)
Q Consensus       218 ------------------------------------------------~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~  249 (298)
                                                                      ....+..++++.++++ +  ++.|.+|+..+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~--~~~v~~~d~~~~  270 (337)
T 1pby_B          194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-A--YNVLESFDLEKN  270 (337)
T ss_dssp             TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE-E--ESEEEEEETTTT
T ss_pred             CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEE-e--CCeEEEEECCCC
Confidence                                                            0112455666677775 3  689999999876


Q ss_pred             ceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          250 RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       250 ~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ... .+. ....+.+++|+|||++|++++.|+. |+|||+.+++.++++
T Consensus       271 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          271 ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEE
T ss_pred             cCcceec-CCCceeeEEECCCCCEEEEEcCCCc-EEEEECcCCcEEEEE
Confidence            554 333 3456899999999999999998998 999999999988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.73  E-value=1.5e-15  Score=144.98  Aligned_cols=198  Identities=10%  Similarity=-0.008  Sum_probs=143.3

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CeEEEEEc--CCCceEEEEeeecCCceEEEEEec----CCCEEEEEeCCCCCCCCCCeEE
Q 022387           87 TLLHISFNQDHGCFAAGTD-HGFRIYNC--DPFREIFRRDFERGGGIGVVEMLF----RCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .+.+++|+|||++|++++. +.|++||+  .+.+.+....  +......+.+++    ++..+++++.      .+++|.
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~------~~~~v~  251 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAY------WPPQFA  251 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEc------cCCeEE
Confidence            4889999999999999887 55889999  7776655554  356677888888    8888877662      358899


Q ss_pred             EEeCCCCcEEEEeecC-----------C-ceEE--------------------------------------------EEE
Q 022387          160 IWDDHQSRCIGELSFR-----------S-EVRS--------------------------------------------VKL  183 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-----------~-~v~~--------------------------------------------v~~  183 (298)
                      |||..+++++..+...           . .+.+                                            +.|
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~  331 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGW  331 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEE
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceE
Confidence            9998887766655321           0 1222                                            234


Q ss_pred             eCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCC--cceEEEEeCCC-CeEEEEecCCCceEEEEEcCC--------
Q 022387          184 RRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANP--KGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYAS--------  248 (298)
Q Consensus       184 ~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~--~~~~~~s~~~d-~~~la~sGs~dg~v~i~~~~~--------  248 (298)
                      +++  +++++.  +++|.+||+.+++++.++.....+  .....+. +++ +.+++++...|++|.+|+...        
T Consensus       332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~-~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~  410 (543)
T 1nir_A          332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  410 (543)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC-CCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence            433  344444  479999999999999888864322  2233342 333 466664234689999999876        


Q ss_pred             cceEeecccccceeEEEECCCCCEEEEEe-------CCCCEEEEEECCCCcEE
Q 022387          249 KRTKFIMAHDSRIACFALTQDGQLLATSS-------TKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       249 ~~~~~~~~H~~~V~~l~fspdg~~lAt~S-------~Dgt~IrIWd~~tg~~l  294 (298)
                      +.+.++..|...+..|+|+|||++|++++       .+++ |+|||+.+++++
T Consensus       411 ~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~v~d~~~~~~~  462 (543)
T 1nir_A          411 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAK  462 (543)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EEEEETTCTTSC
T ss_pred             eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EEEEECCCCCCC
Confidence            34568899999999999999999999997       2778 999999999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.73  E-value=6.2e-15  Score=131.08  Aligned_cols=200  Identities=13%  Similarity=0.043  Sum_probs=150.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387           86 PTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~--------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  157 (298)
                      ..+..++|+|||++|++++.        +.+.+||.++.+.......  ......+.+.+++..++++..      .++.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~------~~~~  112 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNT------VNSA  112 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEET------TTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEec------CCCE
Confidence            46889999999998888773        3488999998877666554  455666778888887766663      3589


Q ss_pred             EEEEeCCCCcEEEEeecCC----------ceEEEEEeCC--eEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEE
Q 022387          158 VMIWDDHQSRCIGELSFRS----------EVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~----------~v~~v~~~~~--~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~  222 (298)
                      |.+||..+++.+..+....          .+..+.++++  .++++.   ++.|.+||+.+++.+..+..+......+++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            9999999999888777643          2577888764  466655   478999999999998888744444556677


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCcceE-eec----ccccceeEEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEe
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM----AHDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~----~H~~~V~~l~fspdg~~lAt~S~D-gt~IrIWd~~tg~~l~~  296 (298)
                      ++++  ..+++ ++.++.|.+||..+.... .+.    ++...+..++|+|+|++|+.++.+ +. |.+||+.+++.+++
T Consensus       193 s~dg--~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEG--KRLYT-TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTT--TEEEE-ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCEEEE
T ss_pred             CCCC--CEEEE-EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcEEEE
Confidence            7655  55554 466899999998876543 333    255678999999999977776655 66 99999999998765


Q ss_pred             c
Q 022387          297 G  297 (298)
Q Consensus       297 ~  297 (298)
                      +
T Consensus       269 ~  269 (353)
T 3vgz_A          269 V  269 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=9.9e-17  Score=149.12  Aligned_cols=197  Identities=14%  Similarity=0.033  Sum_probs=137.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCC----------ceEEE----EeeecCCceEEEEEecCCCEEEEE--eCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPF----------REIFR----RDFERGGGIGVVEMLFRCNILALV--GGGPD  150 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  150 (298)
                      .+..+++++++.+|++|+.++++||+....          .....    ..+.+.+.+..+.+++++..++++  +++  
T Consensus        38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs--  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE--  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT--
T ss_pred             CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC--
Confidence            578899999999999999999999875311          01100    111134568888999888888853  333  


Q ss_pred             CCCCCCeEEEEeCCCC--------cE---EEEee-cCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccC
Q 022387          151 PQYPLNKVMIWDDHQS--------RC---IGELS-FRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIA  214 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~--------~~---~~~~~-~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~  214 (298)
                         .|++|+|||+.++        +.   +..+. +...|.++.|+++   .++++. +++|++||+++.+.+.....|.
T Consensus       116 ---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~  192 (434)
T 2oit_A          116 ---YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST  192 (434)
T ss_dssp             ---TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred             ---CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence               5799999998654        22   22233 3468999999975   355454 5899999999887766666665


Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeeccc-------ccceeEEEECCCCCEEEEEe-CCCC-----
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATSS-TKGT-----  281 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H-------~~~V~~l~fspdg~~lAt~S-~Dgt-----  281 (298)
                      ..+..+++  ++++.+|++ |+.||.|++|+.+......+..|       ...|.+++|++++.++++.+ .||.     
T Consensus       193 ~~v~~v~w--spdg~~las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~  269 (434)
T 2oit_A          193 VAVTSVCW--SPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP  269 (434)
T ss_dssp             GCEEEEEE--CTTSSCEEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred             CceeEEEE--cCCCCEEEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence            55555554  555688884 89999999999984444444433       34899999999998886653 3322     


Q ss_pred             EEEEEECCCC
Q 022387          282 LVRIFNTLDG  291 (298)
Q Consensus       282 ~IrIWd~~tg  291 (298)
                      .+++|++++.
T Consensus       270 ~v~i~~l~~~  279 (434)
T 2oit_A          270 DVVMALLPKK  279 (434)
T ss_dssp             EEEEEECCCT
T ss_pred             ceEEEEeccC
Confidence            3889999865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.71  E-value=3.9e-15  Score=137.31  Aligned_cols=188  Identities=14%  Similarity=0.061  Sum_probs=135.4

Q ss_pred             CCEEEEEcC-------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387           97 HGCFAAGTD-------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        97 g~~lasgs~-------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~  169 (298)
                      +..|+.++.       ..+++||.+.........  |...+..+.+++++..+++++...    .+.+|++||+.+++..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~--~~~~v~~~~~Spdg~~la~~s~~~----~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVR  216 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE--ESSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC--CCCcceeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCcEE
Confidence            556665543       358899998544322222  477889999999999998887321    1258999999998876


Q ss_pred             EEeecCCceEEEEEeCCe--EEEEE--C--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc--eE
Q 022387          170 GELSFRSEVRSVKLRRDR--IIVVL--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QV  241 (298)
Q Consensus       170 ~~~~~~~~v~~v~~~~~~--l~v~~--~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~v  241 (298)
                      ....+...+.++.|+++.  +++..  +  ..|++||+.+++. ..+..+...+..+  .+++|+..|++++..+|  .|
T Consensus       217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~--~~spdg~~l~~~s~~~g~~~i  293 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEP--TWFPDSQNLAFTSDQAGRPQV  293 (415)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEE--EECTTSSEEEEEECTTSSCEE
T ss_pred             EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccce--EECCCCCEEEEEECCCCCcEE
Confidence            555566789999999864  44343  2  4699999988765 4555555444444  45556677776454566  56


Q ss_pred             EEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC---CCEEEEEECCCCcEE
Q 022387          242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLL  294 (298)
Q Consensus       242 ~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIWd~~tg~~l  294 (298)
                      .+|+...+....+..|...+.+++|||||++||.++.+   .. |++||+.++++.
T Consensus       294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~  348 (415)
T 2hqs_A          294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ  348 (415)
T ss_dssp             EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE
Confidence            66788777766777788899999999999999999875   46 999999998763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.71  E-value=5.3e-15  Score=130.63  Aligned_cols=197  Identities=13%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--CeEEEEEcC--CCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD--HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~--~gi~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ...+.+++|+|||++|++++.  +.+++|+++  +........+...+.+..+.+++++..+++++.      .++.|.+
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~i~~  110 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVSV  110 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEEE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------CCCeEEE
Confidence            346778999999998888776  458899998  444332222222346677888888888777663      3588999


Q ss_pred             EeCC---CCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCC-CeEEE----EEeccCCCcceEEEEeCCCC
Q 022387          161 WDDH---QSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD-LKLLH----QIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       161 WD~~---~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~-~~~i~----~~~~~~~~~~~~~~s~~~d~  228 (298)
                      ||+.   ..+.+..+.....+.++.|+++  .++++.  ++.|++||+.+ ++...    .+..+.. .....+.+++++
T Consensus       111 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pdg  189 (343)
T 1ri6_A          111 TRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVFHPNE  189 (343)
T ss_dssp             EEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-CCEEEEEECTTS
T ss_pred             EECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-CCcceEEECCCC
Confidence            9994   4445555666667888899875  455554  58999999976 54432    2222211 223345556666


Q ss_pred             eEEEEecCCCceEEEEEcCC--cce---Eeec----cc--ccceeEEEECCCCCEEE-EEeCCCCEEEEEECC
Q 022387          229 LVLVCPGLQKGQVRVEHYAS--KRT---KFIM----AH--DSRIACFALTQDGQLLA-TSSTKGTLVRIFNTL  289 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~--~~~---~~~~----~H--~~~V~~l~fspdg~~lA-t~S~Dgt~IrIWd~~  289 (298)
                      .++++++..++.|.+|++..  ...   ..+.    +|  ...+..++|+|+|++|+ +++.|+. |++||+.
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~  261 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVS  261 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEc
Confidence            76665677899999999853  222   1121    11  23577899999998777 5557888 9999998

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.71  E-value=1.7e-15  Score=134.31  Aligned_cols=206  Identities=8%  Similarity=0.011  Sum_probs=140.0

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeec-----CCceEEEEEecCCCEEEEEeCC-----CCCCCC
Q 022387           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRCNILALVGGG-----PDPQYP  154 (298)
Q Consensus        87 ~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  154 (298)
                      .+..++|+|||++++ ++.. +.+.+|+.++.+........+     ...+..+.+++++..++++...     +.....
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            356899999998665 4444 558899999887665554311     0114566788888888777621     000001


Q ss_pred             CCeEEEEeCCCCc---EEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC--CC-------------
Q 022387          155 LNKVMIWDDHQSR---CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA--NP-------------  216 (298)
Q Consensus       155 d~~v~iWD~~~~~---~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~--~~-------------  216 (298)
                      ++.|.+||+.+++   .+..+.....+.++.|+++.-+.+.++.|++||+.+++.+..+..+.  .+             
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence            3789999998843   34445555568888898764344456679999999888877775432  00             


Q ss_pred             ----------c-----------------------------------------ceEEEEeCC-CCeEEEEecCCCceEEEE
Q 022387          217 ----------K-----------------------------------------GLCAVSQGV-GSLVLVCPGLQKGQVRVE  244 (298)
Q Consensus       217 ----------~-----------------------------------------~~~~~s~~~-d~~~la~sGs~dg~v~i~  244 (298)
                                .                                         ....+..++ ++.++++ +  ++.|.+|
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~-~--~~~v~~~  280 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG-V--LNRLAKY  280 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE-E--ESEEEEE
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE-E--cCeEEEE
Confidence                      0                                         011222335 6667765 3  7899999


Q ss_pred             EcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          245 HYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       245 ~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |..+.+.. .+. +...+.+++|+|||++|++++.++. |+|||++++++++++
T Consensus       281 d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          281 DLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNI  332 (349)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEE
T ss_pred             ECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCe-EEEEeccccceeeee
Confidence            99877654 333 3456889999999998888888888 999999999988764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=1.6e-14  Score=127.59  Aligned_cols=199  Identities=10%  Similarity=0.100  Sum_probs=136.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCce-EEEEeeecCCceEE-EEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFRE-IFRRDFERGGGIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+ +++|+|||++|++++.  +.+.+||.++.+. ......  ...... +.+++++..++ ++.+..   ..+.|++|
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~  113 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE--GQSSMADVDITPDDQFAV-TVTGLN---HPFNMQSY  113 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE--CSSCCCCEEECTTSSEEE-ECCCSS---SSCEEEEE
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc--CCCCccceEECCCCCEEE-EecCCC---CcccEEEE
Confidence            345 9999999997665554  4588999988775 444433  333444 78888888887 442210   11289999


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-C-Ce-EEEEEcCCCeEEEEE--eccCCCcceEEEEeCCCCeEEEEe
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-E-QK-IFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~-~~-I~iwd~~~~~~i~~~--~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      |..+++.+..+........+.|+++  .++++. . +. |.+|++.....+...  ...........+..++++.+++++
T Consensus       114 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          114 SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             ETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             ECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            9999999888888777889999986  455553 3 67 999998653322111  100111223444555666766556


Q ss_pred             cCCCceEEEEEcCCcce----EeecccccceeEEEECCCCCEEEEEe-CCCCEEEEEECCCCcE
Q 022387          235 GLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL  293 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~----~~~~~H~~~V~~l~fspdg~~lAt~S-~Dgt~IrIWd~~tg~~  293 (298)
                      +..++.|.+|+......    ..+. +...+..++|+|||++|+.++ .++. |.+||+.++++
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~  255 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTL  255 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEE
T ss_pred             eCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCce
Confidence            78899999999986554    3444 446789999999999776654 4666 99999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.69  E-value=1.2e-15  Score=149.84  Aligned_cols=199  Identities=13%  Similarity=0.024  Sum_probs=140.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-C------eEEEEEcCCCceEEEEeeecCC------------------------ceEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-H------GFRIYNCDPFREIFRRDFERGG------------------------GIGVV  133 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~------gi~vw~~~~~~~~~~~~~~~~~------------------------~~~~~  133 (298)
                      ...|.+++|||||++||+++. +      .+++|++++.+....... +..                        .+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS-KVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG-GGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch-hhcccccccccchhhhhhhhhhhccccCccee
Confidence            447999999999999998886 5      478999988765443332 111                        25667


Q ss_pred             EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC---cEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEE
Q 022387          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLH  208 (298)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~  208 (298)
                      .+++++..+++++        .++|++||+.++   +......+...+..+.|+++  .++.+.++.|++||+.+++..+
T Consensus       115 ~~SpDg~~l~~~~--------~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          115 QWSPDAQRLLFPL--------GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EECTTSSEEEEEE--------TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEe--------CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence            8889999998887        278999999988   54433334467899999986  4666678899999998877654


Q ss_pred             EEeccCCCc--------------ceEEEEeCCCCeEEEEecCCCc---------------------------------eE
Q 022387          209 QIETIANPK--------------GLCAVSQGVGSLVLVCPGLQKG---------------------------------QV  241 (298)
Q Consensus       209 ~~~~~~~~~--------------~~~~~s~~~d~~~la~sGs~dg---------------------------------~v  241 (298)
                      ....+...+              ....+.+++|+..|++ ++.|+                                 .|
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~-~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY-ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE-EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEE-EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            333222211              0123444555577775 33332                                 67


Q ss_pred             EEEEcCC-cceEeec---ccccceeEEEECCCCCEEEEEeC-----CCCEEEEEECCCCcEEE
Q 022387          242 RVEHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSST-----KGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       242 ~i~~~~~-~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~-----Dgt~IrIWd~~tg~~l~  295 (298)
                      .+|+..+ +....+.   .|...+..++| |||++||.++.     +.. |++||+.+|++..
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~  326 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRV  326 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEE
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEE
Confidence            7788877 6554332   58889999999 99999998764     556 9999999998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.68  E-value=2.9e-14  Score=126.68  Aligned_cols=200  Identities=10%  Similarity=0.025  Sum_probs=142.5

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CeEEEEEcCCCceEEEEeeecCC---------ceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGG---------GIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasg-s~-~gi~vw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      .+..++|++||++++++ .. +.+.+||.++.+........ ..         ....+.++++++.++++..+     .+
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~  163 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLD-DRKRTEEVRPLQPRELVADDATNTVYISGIG-----KE  163 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESC-CCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SS
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecC-CCccccccCCCCCceEEECCCCCEEEEEecC-----CC
Confidence            46789999999966554 43 55889999988876655531 11         14667788888877776633     35


Q ss_pred             CeEEEEeCCCCcEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCC----CcceEEEEeCCC
Q 022387          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIAN----PKGLCAVSQGVG  227 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~----~~~~~~~s~~~d  227 (298)
                      +.|.+||..+++.+..+. ....+..+.++++  .++++. ++.|.+||+.+++.+..+.....    ....++++++  
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--  241 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA--  241 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT--
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC--
Confidence            889999999999888887 4445777888764  455554 47999999999999888775222    2223455554  


Q ss_pred             CeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEE-EEeCCCCEEEEEECCCCcEEEec
Q 022387          228 SLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lA-t~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +..+++++..++.|.+||..+.... .+..+.  ...++|+|+|++++ +...+++ |.+||+.+++.+.++
T Consensus       242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTF  310 (353)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEE
Confidence            4555555677799999999776543 444332  36799999998554 4446888 999999999887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.66  E-value=3.9e-15  Score=142.56  Aligned_cols=194  Identities=7%  Similarity=-0.038  Sum_probs=126.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEEEeeecC-CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      .+|.+++|+|||++||+++. ++ ++||+++..+.. .... +. ..+....|+++ ..++.+..+.    .+...+||.
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~-~~~~~~~~~~~spd-~~l~~~~~~~----g~~~~~l~~   94 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR-EPINSVLDPHYGVG-RVILVRDVSK----GAEQHALFK   94 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCS-SCCSEECEECTTCS-EEEEEEECST----TSCCEEEEE
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeec-ccccccccccCCCC-eEEEEeccCC----CCcceEEEE
Confidence            47999999999999998875 54 789998665432 2221 12 23444444544 3333333111    134456655


Q ss_pred             CCC---CcEEEEeecCC--ceEEEEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          163 DHQ---SRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       163 ~~~---~~~~~~~~~~~--~v~~v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +..   +... .+....  .+.++.++++.++++.  .+.+.+||+.+++.......+ .  ...+++++  +.+||+ +
T Consensus        95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spD--G~~la~-~  167 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIR--GDLIAG-L  167 (582)
T ss_dssp             EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEE--TTEEEE-E
T ss_pred             EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCC--CCEEEE-E
Confidence            432   2222 333222  3445555666555443  466779999888765443332 2  45566665  478875 4


Q ss_pred             CCC----ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCcEE
Q 022387          236 LQK----GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLL  294 (298)
Q Consensus       236 s~d----g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~~l  294 (298)
                      +.+    +.|++||..++....+..|...+..++|||||++||+++.|+  + |++||+.+|++.
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~  231 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE  231 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE
Confidence            444    678889998888888899999999999999999999888888  7 999999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.66  E-value=1.4e-13  Score=122.81  Aligned_cols=202  Identities=10%  Similarity=0.098  Sum_probs=132.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-C-CeEEEEEcCCCc-eEEEEeeecC----------CceEEEEEecCCCEEEEEeCCCCC
Q 022387           85 PPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFR-EIFRRDFERG----------GGIGVVEMLFRCNILALVGGGPDP  151 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs-~-~gi~vw~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ...+..++|+|||++|++++ . +.+++|+++..+ ......+.+.          ..+..+.+.+++. ++++..    
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~----  159 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL----  159 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET----
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC----
Confidence            45678899999999888877 4 458899996432 2212222111          1256678888888 544442    


Q ss_pred             CCCCCeEEEEeCC-CCcEEE--Eeec--CCceEEEEEeCC--eEEEEE--CCeEEEEEcCC--CeE--EEEEeccCCC--
Q 022387          152 QYPLNKVMIWDDH-QSRCIG--ELSF--RSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD--LKL--LHQIETIANP--  216 (298)
Q Consensus       152 ~~~d~~v~iWD~~-~~~~~~--~~~~--~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~--~~~--i~~~~~~~~~--  216 (298)
                        .++.|++||+. +++...  .+..  ...+..+.|+++  .++++.  ++.|.+|++..  ++.  +..+......  
T Consensus       160 --~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  237 (347)
T 3hfq_A          160 --GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT  237 (347)
T ss_dssp             --TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred             --CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence              35789999998 454332  2222  235677899876  355554  37999999863  443  2333322211  


Q ss_pred             --cceEEEEeCCCCeEEEEecCCCceEEEEEcCCc----ceEeecccccceeEEEECCCCCEEEEEeCC-CCEEEEE--E
Q 022387          217 --KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDGQLLATSSTK-GTLVRIF--N  287 (298)
Q Consensus       217 --~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~----~~~~~~~H~~~V~~l~fspdg~~lAt~S~D-gt~IrIW--d  287 (298)
                        .....+.+++|+.+|++++..++.|.+|++...    .+..+..|...++.++|+|||++|++++.+ +. |+||  |
T Consensus       238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~d  316 (347)
T 3hfq_A          238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN-ATLYARD  316 (347)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE-EEEEEEC
T ss_pred             CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc-EEEEEEe
Confidence              224455566677777656777899999998632    233556667789999999999999888766 66 9999  5


Q ss_pred             CCCCcEE
Q 022387          288 TLDGTLL  294 (298)
Q Consensus       288 ~~tg~~l  294 (298)
                      ..+|++.
T Consensus       317 ~~tg~l~  323 (347)
T 3hfq_A          317 LTSGKLS  323 (347)
T ss_dssp             TTTCCEE
T ss_pred             CCCCeEE
Confidence            5677764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=3.9e-14  Score=125.07  Aligned_cols=197  Identities=11%  Similarity=0.131  Sum_probs=129.4

Q ss_pred             CeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCC---ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           87 TLLHISFNQDHGCFAAGTD-HG-FRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .+.+++|+|||++|++++. ++ +.+|+++..   +......  ....+..+.+.+++..+++++.      .++.|++|
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~  156 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPAL------KQDRICLF  156 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEG------GGTEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecC------CCCEEEEE
Confidence            6789999999998876653 44 889999522   2222222  2345667778888887776652      35889999


Q ss_pred             eCCC-CcEEE----Eee--cCCceEEEEEeCCe--EEEEE--CCeEEEEEcCC--CeE--EEEEeccC----CCcceEEE
Q 022387          162 DDHQ-SRCIG----ELS--FRSEVRSVKLRRDR--IIVVL--EQKIFVYNFAD--LKL--LHQIETIA----NPKGLCAV  222 (298)
Q Consensus       162 D~~~-~~~~~----~~~--~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~--~~~--i~~~~~~~----~~~~~~~~  222 (298)
                      |+.+ ++...    .+.  ....+..+.|+++.  ++++.  ++.|.+|++..  ++.  +..+....    .......+
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            9987 55432    222  23467788998753  55554  47999999943  332  33333211    11233345


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcC--Ccc---eEeecccccceeEEEECCCCCEEEEEe-CCCCEEEEE--ECCCCcE
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYA--SKR---TKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIF--NTLDGTL  293 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~--~~~---~~~~~~H~~~V~~l~fspdg~~lAt~S-~Dgt~IrIW--d~~tg~~  293 (298)
                      .+++++.+|++++..++.|.+|++.  .+.   +..+..+.. +.+++|+|+|++|++++ .|+. |+||  |..+|+.
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~-v~v~~~d~~~g~~  313 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLL  313 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEE
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe-EEEEEEcCCCcee
Confidence            5666667676667889999999997  222   223444444 99999999999888887 5787 9999  5556643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.65  E-value=8.1e-14  Score=123.09  Aligned_cols=191  Identities=10%  Similarity=0.096  Sum_probs=130.4

Q ss_pred             EEEcCCCCE-EEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387           91 ISFNQDHGC-FAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (298)
Q Consensus        91 v~fs~dg~~-lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~  168 (298)
                      ..|.+++.+ +++++. +.+++||.++.+....... +.... .+.+.+++..+++++.      .++.|.+||..+++.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSD------FCQTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEES------TTCEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeC------CCCeEEEEECCCCce
Confidence            346666665 556655 5588999999887666554 23444 7778888887777663      357999999999887


Q ss_pred             -EEEeecCCceEE-EEEeCC--eEEEEECC----eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce
Q 022387          169 -IGELSFRSEVRS-VKLRRD--RIIVVLEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (298)
Q Consensus       169 -~~~~~~~~~v~~-v~~~~~--~l~v~~~~----~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~  240 (298)
                       ...+........ +.++++  .+++...+    .|.+||+.+++.+..+..+..+ ..++  +++++.++++++..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~--~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA-VGIA--ISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE-EEEE--ECTTSSCEEEEEETTTT
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc-cceE--ECCCCCEEEEEecCCCc
Confidence             666666655555 888875  45533333    8999999999988887765443 3444  45555545445666677


Q ss_pred             -EEEEEcCCcc-e----EeecccccceeEEEECCCCCEE-EEEeCCCCEEEEEECCCCcE
Q 022387          241 -VRVEHYASKR-T----KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       241 -v~i~~~~~~~-~----~~~~~H~~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~tg~~  293 (298)
                       |.+|++.... +    .....+...+..++|+|||++| +++..+++ |++||+.++++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~  210 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPEN  210 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTS
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcc
Confidence             9999986432 1    1122334568999999999855 45556777 99999999987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.65  E-value=1.7e-15  Score=148.31  Aligned_cols=206  Identities=8%  Similarity=-0.015  Sum_probs=143.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCC---ceEEEEEecCCCEEEEEeCCCCC--CCCCCeEEEE
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIW  161 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~iW  161 (298)
                      .+.+++|+|||++++++.++.+++|+..+++....... +..   .+..+.+++++..+++++.....  ...++.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            46678999999988875556699999998876544432 222   37788899999999888643210  0124789999


Q ss_pred             eCCCCcEEEEeecC----CceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccCCCc----------------ce
Q 022387          162 DDHQSRCIGELSFR----SEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPK----------------GL  219 (298)
Q Consensus       162 D~~~~~~~~~~~~~----~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~----------------~~  219 (298)
                      |+.+++. ..+...    ..+..+.|+++  .++.+.++.|++||+.+++..+....+...+                ..
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9999876 333322    23777889875  5777778999999998877655544433222                11


Q ss_pred             EEEEeCCCCeEEEEecCC---------------------------------CceEEEEEcCCcce-Eeeccc------cc
Q 022387          220 CAVSQGVGSLVLVCPGLQ---------------------------------KGQVRVEHYASKRT-KFIMAH------DS  259 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~---------------------------------dg~v~i~~~~~~~~-~~~~~H------~~  259 (298)
                      ..+.+++|+..||+....                                 +..|.+|+..+... ..+..|      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            355566677888763322                                 12788899887653 455544      67


Q ss_pred             ceeEEEECCCCCEEEEEeCC----CCEEEEEECCCCcEEE
Q 022387          260 RIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~D----gt~IrIWd~~tg~~l~  295 (298)
                      .|.+++|||||++|++.+..    .. |++||+.+|++..
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~  294 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTK  294 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEE
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceE
Confidence            89999999999999877533    45 9999999998654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.63  E-value=2e-13  Score=121.73  Aligned_cols=196  Identities=13%  Similarity=0.137  Sum_probs=126.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC---CeEEEEEcCCCceEEEEee-ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           86 PTLLHISFNQDHGCFAAGTD---HGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~---~gi~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+..++|+|||++++++..   +.+.+|++++........+ .+......+.+++++..+++++.      .+++|++|
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~------~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY------HKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC------CCCEEEEE
Confidence            35667999999994444432   4588999977653222221 13556777888999988887763      35899999


Q ss_pred             eCCC-Cc--EEEEeecC----------CceEEEEEeCCe-EEEEE--CCeEEEEEcC-CCeEEE--EEeccCCCcceEEE
Q 022387          162 DDHQ-SR--CIGELSFR----------SEVRSVKLRRDR-IIVVL--EQKIFVYNFA-DLKLLH--QIETIANPKGLCAV  222 (298)
Q Consensus       162 D~~~-~~--~~~~~~~~----------~~v~~v~~~~~~-l~v~~--~~~I~iwd~~-~~~~i~--~~~~~~~~~~~~~~  222 (298)
                      |+.. +.  .+..+...          ..+.++.|+++. ++++.  ++.|++|++. +++...  .+..... .....+
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~~~  192 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-FGPRHL  192 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-CCEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-CCCceE
Confidence            9963 32  23333322          137788998754 44443  4699999997 454322  2222111 123334


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCC--cceE---eecccc------cceeEEEECCCCCEE-EEEeCCCCEEEEEECC
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAHD------SRIACFALTQDGQLL-ATSSTKGTLVRIFNTL  289 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~---~~~~H~------~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~  289 (298)
                      .+++|+.++++++..++.|.+|++..  ..+.   .+..+.      ..+..++|+|||++| ++...+++ |+||++.
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~  270 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVT  270 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEEC
Confidence            55556676666678889999998764  3322   222222      358999999999977 56666888 9999997

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.60  E-value=2.2e-14  Score=140.79  Aligned_cols=194  Identities=12%  Similarity=0.046  Sum_probs=135.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCC---ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      .|.+++|||||++|++++.+.+.+|++++.   ... .... +...+..+.+++++..+++++        +++|++||+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~-~l~~-~~~~~~~~~~SPDG~~la~~~--------~~~i~~~d~  179 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVR-QLTH-GEGFATDAKLSPKGGFVSFIR--------GRNLWVIDL  179 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCC-BCCC-SSSCEEEEEECTTSSEEEEEE--------TTEEEEEET
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEE-Eccc-CCcccccccCCCCCCEEEEEe--------CCcEEEEec
Confidence            478899999999999999888999999877   432 2221 356788889999999998887        368999999


Q ss_pred             CCCcEEEEeecCCc-----------------eEEEEEeCC--eEEEEE-CC-----------------------------
Q 022387          164 HQSRCIGELSFRSE-----------------VRSVKLRRD--RIIVVL-EQ-----------------------------  194 (298)
Q Consensus       164 ~~~~~~~~~~~~~~-----------------v~~v~~~~~--~l~v~~-~~-----------------------------  194 (298)
                      .+++..........                 +..+.|+++  .++++. ++                             
T Consensus       180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence            98876544332221                 466889875  455543 22                             


Q ss_pred             ----eEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEec----CCCceEEEEEcCCcceE-eeccccc----c
Q 022387          195 ----KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPG----LQKGQVRVEHYASKRTK-FIMAHDS----R  260 (298)
Q Consensus       195 ----~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG----s~dg~v~i~~~~~~~~~-~~~~H~~----~  260 (298)
                          .|++||+.+ ++.............+..+++ +|+..|++.+    ..++.|.+||..+.... .+..|..    .
T Consensus       260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence                788899987 765433222112223334445 5557776533    24678888999877654 3444443    5


Q ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEECC-CCc
Q 022387          261 IACFALTQDGQLLATSSTKGTLVRIFNTL-DGT  292 (298)
Q Consensus       261 V~~l~fspdg~~lAt~S~Dgt~IrIWd~~-tg~  292 (298)
                      +.+++|+|||+++++++.||. ++||.+. +++
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~  370 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGF-QHLYRIDSKGK  370 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSS-CEEEEECSSSC
T ss_pred             CCceEECCCCeEEEEecCCCc-cEEEEEcCCCC
Confidence            679999999999999999998 9999876 444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.60  E-value=3.1e-14  Score=139.13  Aligned_cols=198  Identities=12%  Similarity=0.053  Sum_probs=138.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ..|.+++|||| .+++.+.++.+++||+.+.+......  +...+..+.+++++..++++.        +++|++||+.+
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~~--------~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFD--TNEETASLDFSPVGDRVAYVR--------NHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEEC--CTTCCTTCEECTTSSEEEEEE--------TTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccC--CcccccCCcCCCCCCEEEEEE--------CCeEEEEecCc
Confidence            47999999999 77776677889999998876533332  345667778899999988864        58899999998


Q ss_pred             -----CcEEEEeecCCc---------------eEEEEEeCC--eEEEEE-------------------------------
Q 022387          166 -----SRCIGELSFRSE---------------VRSVKLRRD--RIIVVL-------------------------------  192 (298)
Q Consensus       166 -----~~~~~~~~~~~~---------------v~~v~~~~~--~l~v~~-------------------------------  192 (298)
                           ++..........               +.++.|+++  .++++.                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 776544333222               478889875  455543                               


Q ss_pred             ---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC-----ceEEEEEcCCc-ceEeec--cccc--
Q 022387          193 ---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-----GQVRVEHYASK-RTKFIM--AHDS--  259 (298)
Q Consensus       193 ---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d-----g~v~i~~~~~~-~~~~~~--~H~~--  259 (298)
                         +..|++||+.+++................+.+++|+..|++ ++.+     ..|.+||..+. ....+.  .+..  
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV-AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE-EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE-EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence               14799999988876443322122233445566666777775 3444     38888999877 444333  2222  


Q ss_pred             -ceeEEEECC--CCCEEEEEeCCCCEEEEEECC-CCcEEEe
Q 022387          260 -RIACFALTQ--DGQLLATSSTKGTLVRIFNTL-DGTLLQE  296 (298)
Q Consensus       260 -~V~~l~fsp--dg~~lAt~S~Dgt~IrIWd~~-tg~~l~~  296 (298)
                       .+.+++|+|  ||++|++++.|+. ++||++. +++++++
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~  349 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQ  349 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEe
Confidence             357899999  9999999999999 9999987 6666554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.59  E-value=1.7e-13  Score=127.21  Aligned_cols=199  Identities=12%  Similarity=0.087  Sum_probs=132.7

Q ss_pred             CCCCCeEEEEEcCCCCEEE----EEcCCe-EEEEEcCCC--------ceEEE-Eee-ecCCceEEEEEecC-CCEEEEEe
Q 022387           83 SPPPTLLHISFNQDHGCFA----AGTDHG-FRIYNCDPF--------REIFR-RDF-ERGGGIGVVEMLFR-CNILALVG  146 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~la----sgs~~g-i~vw~~~~~--------~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~  146 (298)
                      .++..|++++|+|||++||    +|+.++ ++|||+.+.        +.+.. ..+ .|...+..+.|+++ +..+++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            3456899999999999999    677655 889998653        11111 111 15677888899887 67788777


Q ss_pred             CCCCCCCCCCeEEEEeCCCCcEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCC-----Cc
Q 022387          147 GGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIAN-----PK  217 (298)
Q Consensus       147 ~~~~~~~~d~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~-----~~  217 (298)
                             .|++|++||++++..+.... +...|.+++|+++  .++++. +++|++||++ ++...++..+..     ..
T Consensus       170 -------~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          170 -------ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPV  241 (434)
T ss_dssp             -------TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred             -------CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCce
Confidence                   68999999999986654433 4568999999874  566555 5899999998 566666655432     23


Q ss_pred             ceEEEEeCCCCeEEEEecCCCce------EEEEEcCCcc---eEeeccc----------ccceeEEEECCCCCEEEEEeC
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQ------VRVEHYASKR---TKFIMAH----------DSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~------v~i~~~~~~~---~~~~~~H----------~~~V~~l~fspdg~~lAt~S~  278 (298)
                      .+.++++++++.++++.+..+|.      +++|++....   ...+..+          ..+-..+.+-++.+++..+|.
T Consensus       242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~  321 (434)
T 2oit_A          242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA  321 (434)
T ss_dssp             EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred             eEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence            66777887777888765555543      7789986542   1122211          122223333377777766665


Q ss_pred             CCCEEEEEECC
Q 022387          279 KGTLVRIFNTL  289 (298)
Q Consensus       279 Dgt~IrIWd~~  289 (298)
                      ..+.|.|....
T Consensus       322 ~s~dv~vl~~~  332 (434)
T 2oit_A          322 ASTEVSILARQ  332 (434)
T ss_dssp             TCSBCEEEEEC
T ss_pred             CCCceeEEEec
Confidence            44447777754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.59  E-value=1.7e-13  Score=121.29  Aligned_cols=190  Identities=8%  Similarity=0.015  Sum_probs=130.6

Q ss_pred             EEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCC--ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           90 HISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ++++++++.++++++. +.+.+||..+.+.......  ..  ....+.+.++++.++++..      .++.|.+||+.++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~   75 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTC   75 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCC
Confidence            4567888988888876 5688999998877655554  33  4667778888876666653      3588999999999


Q ss_pred             cEEEEeecCC-------ceEEEEEeCC--eEEEEE-------------CCeEEEEEcCCCe---EEEEEeccCCCcceEE
Q 022387          167 RCIGELSFRS-------EVRSVKLRRD--RIIVVL-------------EQKIFVYNFADLK---LLHQIETIANPKGLCA  221 (298)
Q Consensus       167 ~~~~~~~~~~-------~v~~v~~~~~--~l~v~~-------------~~~I~iwd~~~~~---~i~~~~~~~~~~~~~~  221 (298)
                      +.+..+....       .+..+.|+++  .++++.             .+.|.+||+.+++   .+..+..+. .+..++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~  154 (349)
T 1jmx_B           76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMR  154 (349)
T ss_dssp             EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEE
T ss_pred             cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-ccccee
Confidence            8887776533       2677888875  455554             3899999998743   334444332 244455


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcceE-eeccc-------------------------------------------
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAH-------------------------------------------  257 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H-------------------------------------------  257 (298)
                      ++++  +.+++  ++  +.|.+||..+.... .+..+                                           
T Consensus       155 ~s~d--g~l~~--~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          155 AADD--GSLYV--AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             ECTT--SCEEE--ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             ECCC--CcEEE--cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            5554  45444  23  23888988665432 33222                                           


Q ss_pred             -------------------------ccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          258 -------------------------DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       258 -------------------------~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                                               ...+..++|+| ||++|+++  ++. |++||+.+++.++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~  291 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAA  291 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEE
T ss_pred             cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEE
Confidence                                     12456788899 99999998  777 999999999887653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.58  E-value=5.8e-14  Score=137.20  Aligned_cols=194  Identities=9%  Similarity=0.052  Sum_probs=130.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCce--EEEEeeec---------------CCceEEEEEecCCCEEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFER---------------GGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      .+..+.|.  |+.++.++.++| +||..+++.  ........               ...+..+.++++ ..++++.   
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~---   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT---   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE---
T ss_pred             cCCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE---
Confidence            45557888  666666667778 999988765  22222100               035777888888 6666655   


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCC-----CeEEEEEeccCCCc-----
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFAD-----LKLLHQIETIANPK-----  217 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~-----~~~i~~~~~~~~~~-----  217 (298)
                           +++|++||+.+++..........+.++.|+++  .++.+.++.|++||+.+     ++.......+...+     
T Consensus       100 -----~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  174 (706)
T 2z3z_A          100 -----QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA  174 (706)
T ss_dssp             -----TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC
T ss_pred             -----CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc
Confidence                 48899999999877665555567888889875  56666789999999987     66543322222211     


Q ss_pred             -------ceEEEEeCCCCeEEEEec--------------------------------CCCceEEEEEcCCcceEeec---
Q 022387          218 -------GLCAVSQGVGSLVLVCPG--------------------------------LQKGQVRVEHYASKRTKFIM---  255 (298)
Q Consensus       218 -------~~~~~s~~~d~~~la~sG--------------------------------s~dg~v~i~~~~~~~~~~~~---  255 (298)
                             ....+.+++|+..|++..                                ..++.|.+|+..+.....+.   
T Consensus       175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~  254 (706)
T 2z3z_A          175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE  254 (706)
T ss_dssp             CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred             hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence                   013344555668887633                                14467888999877654332   


Q ss_pred             ccccceeEEEECCCCCEEEEEeCCC-----CEEEEEECCCCcE
Q 022387          256 AHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTL  293 (298)
Q Consensus       256 ~H~~~V~~l~fspdg~~lAt~S~Dg-----t~IrIWd~~tg~~  293 (298)
                      .|...|.+++|+|||++|++++.|+     + |++||+.+|+.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~  296 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRF  296 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCE
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCce
Confidence            5778899999999999999988776     7 99999999943

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=4.6e-13  Score=115.02  Aligned_cols=176  Identities=10%  Similarity=-0.009  Sum_probs=125.1

Q ss_pred             CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC-CcEEEEeecC--CceEEEE
Q 022387          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSFR--SEVRSVK  182 (298)
Q Consensus       106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~-~~~~~~~~~~--~~v~~v~  182 (298)
                      ..+++|++.+.+......  |...+..+.+++++..+++++        ++.|++||+.+ ++........  ..+.++.
T Consensus        22 ~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             eeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            348899998877654443  477899999999999888865        47899999999 8776555444  4677888


Q ss_pred             EeCC--eEEEEEC-----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEc--CCcceEe
Q 022387          183 LRRD--RIIVVLE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKF  253 (298)
Q Consensus       183 ~~~~--~l~v~~~-----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~--~~~~~~~  253 (298)
                      |+++  .++++..     ..|..|++.+.+ ...+..+. .  ...+.+++++..+++++..++.+.+|++  .......
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~--~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-P--SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-S--EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-C--ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            9875  4555551     355555555544 33443332 2  3444556666777766888999999885  4455667


Q ss_pred             ecccccceeEEEECCCCCEEEEEe-CCCCEEEEEECC-CCcEEEe
Q 022387          254 IMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL-DGTLLQE  296 (298)
Q Consensus       254 ~~~H~~~V~~l~fspdg~~lAt~S-~Dgt~IrIWd~~-tg~~l~~  296 (298)
                      +..|...+.+++|+|+|++|+.++ .|+. ++||++. .+..+.+
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~  211 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVER  211 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEE
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEE
Confidence            788889999999999999888776 5888 9999986 4444443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.57  E-value=1.1e-12  Score=115.44  Aligned_cols=183  Identities=9%  Similarity=-0.011  Sum_probs=129.8

Q ss_pred             CEEEEEcC-CeEEEEEcCCCceEEEEeeecCC---ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEee
Q 022387           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (298)
Q Consensus        98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~  173 (298)
                      ++|++++. +.+.+||..+.+.+.....  .+   ....+.+++++..++++..      .++.|.+||+.+++.+..+.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~~~~   73 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeC------CCCeEEEEECCCCCeEeeEE
Confidence            46777766 6688999998877655554  33   4677888888877766653      35889999999999887777


Q ss_pred             cCC------ceEEEEEeCC--eEEEEE-------------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          174 FRS------EVRSVKLRRD--RIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       174 ~~~------~v~~v~~~~~--~l~v~~-------------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      ...      .+..+.++++  .++++.             ++.|.+||+.+++.+..+..... ...++++++  +.+++
T Consensus        74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~s~d--g~~l~  150 (337)
T 1pby_B           74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-ITMLAWARD--GSKLY  150 (337)
T ss_dssp             CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CCCEEECTT--SSCEE
T ss_pred             cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-cceeEECCC--CCEEE
Confidence            543      5677888865  455553             48999999999988888776433 334555554  46555


Q ss_pred             EecCCCceEEEEEcCCcceE-eec--------------------------------------------------------
Q 022387          233 CPGLQKGQVRVEHYASKRTK-FIM--------------------------------------------------------  255 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~-~~~--------------------------------------------------------  255 (298)
                      ++   ++.|.+|+..+.... .+.                                                        
T Consensus       151 ~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          151 GL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             EE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             Ee---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence            42   577888887654322 111                                                        


Q ss_pred             ----------ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          256 ----------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       256 ----------~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                                .|...+.+++|+|||++|+++  |+. |++||+.+++.+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRV  276 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEE
T ss_pred             CCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECCCCcCccee
Confidence                      122345679999999999988  687 999999999887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.57  E-value=1e-13  Score=141.69  Aligned_cols=193  Identities=10%  Similarity=-0.102  Sum_probs=144.8

Q ss_pred             CeEEEEEc-CCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCC-ceEEEEEecCCCEEEEEeCCCCCCCCCCeEE-EEeC
Q 022387           87 TLLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG-GIGVVEMLFRCNILALVGGGPDPQYPLNKVM-IWDD  163 (298)
Q Consensus        87 ~V~~v~fs-~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~-iWD~  163 (298)
                      .|.+++|+ |||++||+++++.+.+|+........ ... +.+ .+..+.++ ++..+++++       .+..+. +||+
T Consensus       297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~-~~~~~~~~~~~s-dg~~l~~~s-------~~~~l~~~~d~  366 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPE-PLRIRYVRRGGD-TKVAFIHGT-------REGDFLGIYDY  366 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSC-CSCEEEEEECSS-SEEEEEEEE-------TTEEEEEEEET
T ss_pred             ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccC-CCcceEEeeeEc-CCCeEEEEE-------CCCceEEEEEC
Confidence            58899999 99999999988888899987765432 211 233 45556666 666777777       346788 8899


Q ss_pred             CCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC---
Q 022387          164 HQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ---  237 (298)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~---  237 (298)
                      .+++......+...+..+.|+++  .++++. ++.|++||+.+++....+..|...+..+++++  |+.+|++++..   
T Consensus       367 ~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp--DG~~la~~~~~~~~  444 (1045)
T 1k32_A          367 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD--NSRFIAYGFPLKHG  444 (1045)
T ss_dssp             TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT--TSCEEEEEEEECSS
T ss_pred             CCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC--CCCeEEEEecCccc
Confidence            88765443333357889999986  355444 47999999999888777666766666666665  45777764332   


Q ss_pred             ------CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          238 ------KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       238 ------dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                            ++.|++|+..+.....+..|...+.+++|+|||++|+.++.++. .++|+.....
T Consensus       445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~  504 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLN  504 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSC
T ss_pred             cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccc
Confidence                  25899999988877788899999999999999999999999998 8999876543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.56  E-value=2.1e-12  Score=115.84  Aligned_cols=199  Identities=13%  Similarity=0.083  Sum_probs=124.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-----eEEEEEcCCC--ceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~-----gi~vw~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      +...+..++|+|||++|++++.+     .+.+|+++..  +........ +......+.+  ++..++++..      .+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~------~~  119 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY------SG  119 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET------TT
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC------CC
Confidence            34466779999999999988773     6889998764  322222221 1233444444  7777776663      36


Q ss_pred             CeEEEEeCCCCcEEEE----eec-----------CCceEEEEEeCCe--EEEEE--CCeEEEEEcCCCe-------EE--
Q 022387          156 NKVMIWDDHQSRCIGE----LSF-----------RSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLK-------LL--  207 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~----~~~-----------~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~-------~i--  207 (298)
                      ++|.+|++.....+..    +.+           ...+.++.|+++.  ++++.  ++.|++|++....       +.  
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            8999999975433221    111           1234778998763  55554  4799999986432       11  


Q ss_pred             ---EEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE---e---ecccccceeEEEECCCCCEEEEEeC
Q 022387          208 ---HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---F---IMAHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       208 ---~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~---~~~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                         ..+... .......+.+++|+.++++++..++.|.+|++....+.   .   ...+...+..|+|+|||++|+.+..
T Consensus       200 ~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          200 GTPEAFKVA-PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             ccccceecC-CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence               122221 11223344555666766665667899999998765432   2   2334456789999999998876665


Q ss_pred             C--CCEEEEEECC--CCc
Q 022387          279 K--GTLVRIFNTL--DGT  292 (298)
Q Consensus       279 D--gt~IrIWd~~--tg~  292 (298)
                      +  ++ |+||++.  +|+
T Consensus       279 ~~~~~-i~v~~~~~~~g~  295 (361)
T 3scy_A          279 LKADG-VAIFKVDETNGT  295 (361)
T ss_dssp             SSSCE-EEEEEECTTTCC
T ss_pred             CCCCE-EEEEEEcCCCCc
Confidence            4  77 9999995  555

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.55  E-value=1.8e-12  Score=117.05  Aligned_cols=207  Identities=10%  Similarity=0.054  Sum_probs=126.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcC-CCceEEEEeeecCCceEEEEEecCCCEE-EEEeC-CCCCCC------CCCe
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGG-GPDPQY------PLNK  157 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~------~d~~  157 (298)
                      .+..++|+|||++|++++.+.+.+|+++ +++..........+....+.++++++.+ +.+.. +.-..+      .+++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~  120 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence            5678999999999988887788999997 6554322221001222334455566642 22221 000000      2588


Q ss_pred             EEEEeCC-CCcEEEEee-----cCCceEEEEEeCCe--EEEEE--CCeEEEEEcC-CCeEE--EEEeccCCCcceEEEEe
Q 022387          158 VMIWDDH-QSRCIGELS-----FRSEVRSVKLRRDR--IIVVL--EQKIFVYNFA-DLKLL--HQIETIANPKGLCAVSQ  224 (298)
Q Consensus       158 v~iWD~~-~~~~~~~~~-----~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~-~~~~i--~~~~~~~~~~~~~~~s~  224 (298)
                      +++|++. .++....+.     ....+.++.|+++.  ++++.  ++.|++||+. +++..  ..+...........+.+
T Consensus       121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~  200 (365)
T 1jof_A          121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred             EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence            9999997 465544333     23478889999863  55544  3699999997 66543  33332111122334445


Q ss_pred             CCCCeEEEEecCCCceEEEEEcC--CcceE-------eec----cccc------ceeEEE-ECCCCCEEEEEeCCC----
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYA--SKRTK-------FIM----AHDS------RIACFA-LTQDGQLLATSSTKG----  280 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~--~~~~~-------~~~----~H~~------~V~~l~-fspdg~~lAt~S~Dg----  280 (298)
                      ++|+.++++++..++.|.+|+++  +..+.       .+.    +|..      .+..++ |+|||++|++++.+.    
T Consensus       201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~  280 (365)
T 1jof_A          201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred             CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence            55667776556668899998765  23221       121    2333      589999 999999887775433    


Q ss_pred             --CEEEEEECC-CCcEE
Q 022387          281 --TLVRIFNTL-DGTLL  294 (298)
Q Consensus       281 --t~IrIWd~~-tg~~l  294 (298)
                        + |+||++. +|++.
T Consensus       281 ~~~-i~v~~~~~~g~~~  296 (365)
T 1jof_A          281 QGY-IAGFKLRDCGSIE  296 (365)
T ss_dssp             CCE-EEEEEECTTSCEE
T ss_pred             CCe-EEEEEECCCCCEE
Confidence              6 9999996 67653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.54  E-value=1.9e-14  Score=140.98  Aligned_cols=204  Identities=8%  Similarity=-0.011  Sum_probs=135.0

Q ss_pred             EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCC---ceEEEEEecCCCEEEEEeCCCCC--CCCCCeEEEEeCC
Q 022387           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDH  164 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~iWD~~  164 (298)
                      .++|+|||++++++.++.+++|+..+++....... +..   .+..+.+++++..+++++.....  ...+++|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67999999888877767799999998876443331 111   26788899999999887731000  0015889999999


Q ss_pred             CCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEec-cCCCcc---------------eEEEEeCC
Q 022387          165 QSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIET-IANPKG---------------LCAVSQGV  226 (298)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~-~~~~~~---------------~~~~s~~~  226 (298)
                      +++.+........+..+.|+++  .++.+.++.|++||+.+++..+.... +...+.               ...+.++|
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence            9876322233356788899885  57777789999999987765432211 111100               02445556


Q ss_pred             CCeEEEEecCCC---------------------------------ceEEEEEcCCcce---------EeecccccceeEE
Q 022387          227 GSLVLVCPGLQK---------------------------------GQVRVEHYASKRT---------KFIMAHDSRIACF  264 (298)
Q Consensus       227 d~~~la~sGs~d---------------------------------g~v~i~~~~~~~~---------~~~~~H~~~V~~l  264 (298)
                      |+..||+....+                                 ..|.+|+..++..         ..+.+|...+.++
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL  258 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence            668888633221                                 1677899887653         1234688899999


Q ss_pred             EECCCCCEEEEEeCCC---CEEEEEE----CCCCcEE
Q 022387          265 ALTQDGQLLATSSTKG---TLVRIFN----TLDGTLL  294 (298)
Q Consensus       265 ~fspdg~~lAt~S~Dg---t~IrIWd----~~tg~~l  294 (298)
                      +|||||+++++....+   ..|.+||    +.+|++.
T Consensus       259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence            9999998888754221   1288899    7777653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.53  E-value=2.8e-13  Score=132.51  Aligned_cols=202  Identities=10%  Similarity=-0.031  Sum_probs=133.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCce------------------EEEEEecCCCEEEEEe
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI------------------GVVEMLFRCNILALVG  146 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~  146 (298)
                      ...|..++|||||++||.++++.+.+|+.++.+....... +...+                  ..+.|++++..+++++
T Consensus       113 ~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             cccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            3458899999999999999998899999988665333221 12222                  5688999999888876


Q ss_pred             CCCCC---------------------------CCCCCeEEEEeCCCCcEEEEeec-------CCceEEEEEeCCeEEE--
Q 022387          147 GGPDP---------------------------QYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRDRIIV--  190 (298)
Q Consensus       147 ~~~~~---------------------------~~~d~~v~iWD~~~~~~~~~~~~-------~~~v~~v~~~~~~l~v--  190 (298)
                      .....                           ...+.+|++||+.+++....+..       ...+..+.|+++.-.+  
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~  271 (723)
T 1xfd_A          192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (723)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             ECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence            32100                           00123799999998876555543       2467889999875333  


Q ss_pred             EEC-----CeEEEEEcCCCeEEEEEecc-CCCcc----eEEEEeCCCCeEEEEe-cCCCc------eEEEEE-cCCcc--
Q 022387          191 VLE-----QKIFVYNFADLKLLHQIETI-ANPKG----LCAVSQGVGSLVLVCP-GLQKG------QVRVEH-YASKR--  250 (298)
Q Consensus       191 ~~~-----~~I~iwd~~~~~~i~~~~~~-~~~~~----~~~~s~~~d~~~la~s-Gs~dg------~v~i~~-~~~~~--  250 (298)
                      ..+     ..|++||+.+++....+..+ ...+.    .+++++++  ..|++. +..+|      .|.+|+ ...+.  
T Consensus       272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  349 (723)
T 1xfd_A          272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG--RKFFFIRAIPQGGRGKFYHITVSSSQPNSSND  349 (723)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS--CSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred             EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC--CeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence            221     47999999888876655442 22222    45566554  555543 55666      455566 34444  


Q ss_pred             -eEeecccccceeE-EEECCCCCEEEEEeCC---CCEEEEEECCC
Q 022387          251 -TKFIMAHDSRIAC-FALTQDGQLLATSSTK---GTLVRIFNTLD  290 (298)
Q Consensus       251 -~~~~~~H~~~V~~-l~fspdg~~lAt~S~D---gt~IrIWd~~t  290 (298)
                       ...+..+...+.. ++|||||++|+..+.+   ++ ++||++..
T Consensus       350 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~l~~~~~  393 (723)
T 1xfd_A          350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR-RQLYSANT  393 (723)
T ss_dssp             CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC-CEEEEECS
T ss_pred             ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc-eEEEEEeC
Confidence             4556544455554 7999999999877665   77 99999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.53  E-value=2.3e-13  Score=130.23  Aligned_cols=191  Identities=9%  Similarity=0.055  Sum_probs=134.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----CeEEEEEcCC--CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGCFAAGTD----HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|..++|+|| ++++++..    +..+||.++.  .+......  .........++++++.++++++.      ++.+.
T Consensus        65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~--~~~~~~~~~~s~dg~~~~~~s~~------~~~~~  135 (582)
T 3o4h_A           65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE--AVKPMRILSGVDTGEAVVFTGAT------EDRVA  135 (582)
T ss_dssp             SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT--TSCSBEEEEEEECSSCEEEEEEC------SSCEE
T ss_pred             cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccccc--CCCCceeeeeCCCCCeEEEEecC------CCCce
Confidence            57899999999 77776653    3467776654  33222222  23445577888998877666643      24455


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-C----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-E----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      |||+.+++.........  .++.|+++  .++.+. +    ..|++||+.+++. +.+..+...+  ..+.+++|+..|+
T Consensus       136 l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~--~~~~~SpDG~~l~  210 (582)
T 3o4h_A          136 LYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSF--SSASISPGMKVTA  210 (582)
T ss_dssp             EEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEE--EEEEECTTSCEEE
T ss_pred             EEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCcc--ccceECCCCCEEE
Confidence            99999887655554444  66777764  455333 3    5799999987775 3565554444  4445556668888


Q ss_pred             EecCCCc--eEEEEEcCCcceEeecccccceeEEE--------ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFA--------LTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       233 ~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~--------fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                       ++..+|  .|.+|+..++....+..|...|..++        |||||+++++++.|++ ++||++  |+++
T Consensus       211 -~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~  278 (582)
T 3o4h_A          211 -GLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERV  278 (582)
T ss_dssp             -EEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEE
T ss_pred             -EccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCee
Confidence             467788  78889998876667778888888888        9999999999999999 999999  7665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.53  E-value=3.7e-13  Score=137.59  Aligned_cols=192  Identities=9%  Similarity=0.092  Sum_probs=139.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee----------cCCceEEEEEe-cCCCEEEEEeCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----------RGGGIGVVEML-FRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d  155 (298)
                      .+..++|+|||++||.+.+..+.+|+.+.... ......          +...+..+.++ +++..+++++        +
T Consensus       246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--------~  316 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--------R  316 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--------T
T ss_pred             CcceeeEcCCCCEEEEEeCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE--------c
Confidence            46678999999999999888899999854332 222110          11246788889 9998888876        4


Q ss_pred             CeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCe--EEEEEC-CeEE-EEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          156 NKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVLE-QKIF-VYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--l~v~~~-~~I~-iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      +.|.+||...+.......+.. .+..+.|+ +.  ++.+.+ ..+. +||+.+.+. ..+..+...  ...+.+++|+.+
T Consensus       317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~~~~~~--~~~~~~SpDG~~  392 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGN--VFAMGVDRNGKF  392 (1045)
T ss_dssp             TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCS--EEEEEECTTSSE
T ss_pred             CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-eEecCCccc--eeeeEECCCCCE
Confidence            789999998877654333444 67788888 63  444443 5777 889876654 334433333  344555566688


Q ss_pred             EEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCC----------CEEEEEECCCCcE
Q 022387          231 LVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKG----------TLVRIFNTLDGTL  293 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dg----------t~IrIWd~~tg~~  293 (298)
                      ||+ ++.++.|++|+..++... .+..|...|.+++|||||++||+++.++          . |+|||+.+++.
T Consensus       393 la~-~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~-i~l~d~~~g~~  464 (1045)
T 1k32_A          393 AVV-ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA-IHVYDMEGRKI  464 (1045)
T ss_dssp             EEE-EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE-EEEEETTTTEE
T ss_pred             EEE-ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe-EEEEECCCCcE
Confidence            885 788899999999887665 4458999999999999999999998765          6 99999998873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.51  E-value=2.3e-11  Score=108.96  Aligned_cols=201  Identities=10%  Similarity=0.117  Sum_probs=127.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEE----EEeee---------cCCceEEEEEecCCCEEEEEeCCC
Q 022387           85 PPTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIF----RRDFE---------RGGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      ......+++  ||++|+++..  +.+.+|++...+.+.    .....         +......+.+++++..++++..  
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--  174 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL--  174 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET--
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC--
Confidence            346777888  8888877763  458899987543221    11110         0112356788888887777663  


Q ss_pred             CCCCCCCeEEEEeCCCCc-------E-------EEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeE--EEE
Q 022387          150 DPQYPLNKVMIWDDHQSR-------C-------IGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKL--LHQ  209 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~-------~-------~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~--i~~  209 (298)
                          .++.|++|++....       .       ...+.....+..+.|+++  .++++.  ++.|.+|++.+++.  +..
T Consensus       175 ----~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          175 ----GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             ----TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             ----CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence                35789999887533       1       112233346778999886  455665  47999999986654  333


Q ss_pred             EeccCC-CcceEEEEeCCCCeEEEEecCC-CceEEEEEcC--CcceE---eecccccceeEEEECCCCCEEEEEe-CCCC
Q 022387          210 IETIAN-PKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYA--SKRTK---FIMAHDSRIACFALTQDGQLLATSS-TKGT  281 (298)
Q Consensus       210 ~~~~~~-~~~~~~~s~~~d~~~la~sGs~-dg~v~i~~~~--~~~~~---~~~~H~~~V~~l~fspdg~~lAt~S-~Dgt  281 (298)
                      +..... ......+.+++|+.+|+++... ++.|.+|++.  .....   .+.. ...+++++|+|||++|++++ .++.
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence            333211 1223355555666777665666 7899999985  33322   3333 45789999999999988887 4566


Q ss_pred             EEEEE--ECCCCcEEE
Q 022387          282 LVRIF--NTLDGTLLQ  295 (298)
Q Consensus       282 ~IrIW--d~~tg~~l~  295 (298)
                       |+||  |..+|++..
T Consensus       330 -v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          330 -IQIFERDQATGLLTD  344 (361)
T ss_dssp             -EEEEEECTTTCCEEE
T ss_pred             -EEEEEEECCCCcEee
Confidence             9996  555777643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.48  E-value=4.2e-12  Score=114.51  Aligned_cols=192  Identities=11%  Similarity=-0.067  Sum_probs=124.6

Q ss_pred             EEEcCCCCEEEEEcC-Ce---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           91 ISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        91 v~fs~dg~~lasgs~-~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      .+|||||++||.+++ ++   +.+|++++.+....... +...+....+++++..++++.       .++.|++||+.++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~~l~~~~-------~~~~l~~~d~~~g  112 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDDALFYVK-------DGRNLMRVDLATL  112 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSSEEEEEE-------TTTEEEEEETTTC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCCEEEEEe-------CCCeEEEEECCCC
Confidence            789999999998886 66   66778777654322221 122222356889999999888       4578999999998


Q ss_pred             cEEEEeecCCc-eEEE--EEeCCe-EEEE------------------------ECCeEEEEEcCCCeEEEEEeccCCCcc
Q 022387          167 RCIGELSFRSE-VRSV--KLRRDR-IIVV------------------------LEQKIFVYNFADLKLLHQIETIANPKG  218 (298)
Q Consensus       167 ~~~~~~~~~~~-v~~v--~~~~~~-l~v~------------------------~~~~I~iwd~~~~~~i~~~~~~~~~~~  218 (298)
                      +....+..+.. +...  .++++. ++++                        ....|.+||+.+++.. .+..+...+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~  191 (388)
T 3pe7_A          113 EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLG  191 (388)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEE
T ss_pred             cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCcccc
Confidence            87665555443 2222  235442 2221                        1257999999887653 4444444444


Q ss_pred             eEEEEeCCCCeEEEEecCC-----CceEEEEEcCCcceEeecccc--cceeEEEECCCCCEEEEEeCC-----CCEEEEE
Q 022387          219 LCAVSQGVGSLVLVCPGLQ-----KGQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLATSSTK-----GTLVRIF  286 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~-----dg~v~i~~~~~~~~~~~~~H~--~~V~~l~fspdg~~lAt~S~D-----gt~IrIW  286 (298)
                      ...+++. |+..|++....     ...|.+++...+....+..+.  ..+..++|||||+.||..+.+     .. |.+|
T Consensus       192 ~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-l~~~  269 (388)
T 3pe7_A          192 HPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF-IYSA  269 (388)
T ss_dssp             EEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE-EEEE
T ss_pred             ccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce-EEEE
Confidence            5555550 45777653332     336777887776666666555  358899999999988765542     23 9999


Q ss_pred             ECCCCcE
Q 022387          287 NTLDGTL  293 (298)
Q Consensus       287 d~~tg~~  293 (298)
                      |+.+|+.
T Consensus       270 d~~~g~~  276 (388)
T 3pe7_A          270 DPETLEN  276 (388)
T ss_dssp             CTTTCCE
T ss_pred             ecCCCce
Confidence            9999874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.47  E-value=1.6e-12  Score=128.34  Aligned_cols=202  Identities=11%  Similarity=0.053  Sum_probs=133.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCC---ceEE--EEEecCCCEEEEEeCCCCC--CCCCCeEE
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG---GIGV--VEMLFRCNILALVGGGPDP--QYPLNKVM  159 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~--~~~d~~v~  159 (298)
                      ...+++|+|||++|+++ ++.|++|++.+++....... |..   .+..  ..+++++..+++.+.....  ....+.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45579999999999998 77799999998876443332 111   1222  6778999988887731100  00115678


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccCCCcce-----------------E
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGL-----------------C  220 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~-----------------~  220 (298)
                      +||+.+++......+...+....|+|+  .++.+.++.|++|++.+++..+ +.........                 .
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCc
Confidence            999999886543344567889999985  5777778999999997776432 2211111101                 1


Q ss_pred             EEEeCCCCeEEEEecCC---------------------------------Cc--eEEEEEcCC---c---ceEeec----
Q 022387          221 AVSQGVGSLVLVCPGLQ---------------------------------KG--QVRVEHYAS---K---RTKFIM----  255 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~---------------------------------dg--~v~i~~~~~---~---~~~~~~----  255 (298)
                      ++.++||+..||+....                                 +.  .|.+|++++   +   ....+.    
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            24455666877763211                                 11  567788887   5   444444    


Q ss_pred             --ccccceeEEEECCCCCEEEEEeC----CCCEEEEEECCCCc
Q 022387          256 --AHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGT  292 (298)
Q Consensus       256 --~H~~~V~~l~fspdg~~lAt~S~----Dgt~IrIWd~~tg~  292 (298)
                        +|...|..++|||||+++|....    +.. |++||+.+|+
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~  296 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESS  296 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTT
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCc
Confidence              38888999999999997776632    335 9999999987

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.47  E-value=6e-11  Score=102.73  Aligned_cols=194  Identities=12%  Similarity=0.096  Sum_probs=127.6

Q ss_pred             CCeEEEEE-cCCCCEEEEEc--CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISF-NQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~f-s~dg~~lasgs--~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..+.++++ .++|++++++.  ++.+++|+. ..+.+......+......+.+..+++.++...       .++.|.+||
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~  148 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVEC-------KVMRVIIFD  148 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEET-------TTTEEEEEC
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEEC-------CCCEEEEEc
Confidence            46889999 57888777774  567889983 34433322211123456667777776444433       357899999


Q ss_pred             CCCCcEEEEeec---CCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          163 DHQSRCIGELSF---RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       163 ~~~~~~~~~~~~---~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      .. ++.+..+..   ...+..++++++ .+.++.  ++.|++||.. ++.+.++...........+..++++.++++ ..
T Consensus       149 ~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~-~~  225 (286)
T 1q7f_A          149 QN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIA-DN  225 (286)
T ss_dssp             TT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEE-EC
T ss_pred             CC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEE-eC
Confidence            64 555555542   235788999875 444444  4799999974 556666654321123345555666677774 55


Q ss_pred             CCc-eEEEEEcCCcceEeeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          237 QKG-QVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       237 ~dg-~v~i~~~~~~~~~~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .++ .|.+|+.+.+.+..+..+..  .+.+|+|+|+|+++++ +.|++ |+||++....
T Consensus       226 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~-v~v~~~~~~~  282 (286)
T 1q7f_A          226 HNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR-LYIYRYVQLA  282 (286)
T ss_dssp             SSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE-EEEEECSCCC
T ss_pred             CCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe-EEEEEccccc
Confidence            565 99999977666666655543  4789999999998888 56888 9999987643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.45  E-value=3.6e-11  Score=108.74  Aligned_cols=197  Identities=14%  Similarity=0.180  Sum_probs=123.1

Q ss_pred             EEEEcCCCCEEEEEc-----------CCeEEEEEcCCCceEEEEeee-----cCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        90 ~v~fs~dg~~lasgs-----------~~gi~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      .++|+|||++|+++.           ++.+.+||..+.+........     +......+.+++++..++++..+     
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----  128 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----  128 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----
Confidence            799999999998875           234889999988776555431     01234456788889888887632     


Q ss_pred             CCCeEEEEeCCCCcEEEE-eecCCc---------------------eEEEEEeC--------------------------
Q 022387          154 PLNKVMIWDDHQSRCIGE-LSFRSE---------------------VRSVKLRR--------------------------  185 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~-~~~~~~---------------------v~~v~~~~--------------------------  185 (298)
                      .+++|.+||+.+++.+.+ +.....                     +..+.+..                          
T Consensus       129 ~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPA  208 (361)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEec
Confidence            247899999999988777 543221                     11111111                          


Q ss_pred             ---CeEEEE-ECCeEEEEEcCCCe--EEEEEeccC--------CCc--ceEEEEeCCCCeEEEEecC----------CCc
Q 022387          186 ---DRIIVV-LEQKIFVYNFADLK--LLHQIETIA--------NPK--GLCAVSQGVGSLVLVCPGL----------QKG  239 (298)
Q Consensus       186 ---~~l~v~-~~~~I~iwd~~~~~--~i~~~~~~~--------~~~--~~~~~s~~~d~~~la~sGs----------~dg  239 (298)
                         ..+++. .++.|.++|+...+  .+..+....        .+.  ..+++++++...+++  .+          ..+
T Consensus       209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~--~~~~~~~~~~~~~~~  286 (361)
T 2oiz_A          209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF--MHPDGKEGTHKFPAA  286 (361)
T ss_dssp             ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE--EESSCCTTCTTCCCS
T ss_pred             ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEE--EccCCCcccccCCCc
Confidence               011111 12455666653221  222221100        011  125666654333332  22          134


Q ss_pred             eEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEEec
Q 022387          240 QVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEG  297 (298)
Q Consensus       240 ~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg--~~l~~~  297 (298)
                      .|.+||..+.+. .++..+.  +..|+|+|||++|++++. ++ |.|||..++  ++++++
T Consensus       287 ~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          287 EIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-VNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC-EEEEECSSSSCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-EEEEECCCCcceeeEEe
Confidence            899999887664 4677776  999999999999999986 88 999999999  888763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.44  E-value=2.7e-10  Score=98.55  Aligned_cols=201  Identities=15%  Similarity=0.219  Sum_probs=132.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-----cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+.+++++++|+++++... +.|++|+.+ .+........     +......+.+......+.++..+     .++.|+
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~  103 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQ  103 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEE
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEE
Confidence            47889999999998888765 668899876 3333222210     11244555553233344444421     157899


Q ss_pred             EEeCCCCcEEEEeecC--CceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          160 IWDDHQSRCIGELSFR--SEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~--~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +|| .+++.+..+...  ..+..+.++++ .+.++.  ++.|.+||. +++.+..+...........+..++++.+++ +
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~  180 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFI-S  180 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEE-E
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEE-E
Confidence            999 566666666432  36788888865 355554  378999996 456666665322222344555566667766 4


Q ss_pred             cCCCceEEEEEcCCcceEeeccc--ccceeEEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEec
Q 022387          235 GLQKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~~~~~H--~~~V~~l~fspdg~~lAt~S~Dg-t~IrIWd~~tg~~l~~~  297 (298)
                      ...++.|.+|+.+.+.+..+..+  ...+..|+++++|+++++...++ . |++||. +|+.++++
T Consensus       181 ~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~  244 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISAL  244 (286)
T ss_dssp             EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEE
T ss_pred             ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEE
Confidence            67788999999877665555433  46799999999999999998886 8 999994 57666554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.41  E-value=4.1e-11  Score=106.41  Aligned_cols=193  Identities=16%  Similarity=0.114  Sum_probs=121.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-C---e--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC--C-------
Q 022387           86 PTLLHISFNQDHGCFAAGTD-H---G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP--D-------  150 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~---g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------  150 (298)
                      ..+..++|||||++||..+. .   .  +.+|++++.+.......  .. +..+.|++++..+++++...  +       
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            36788999999999997764 2   2  55667776654333332  33 77778888998888876210  0       


Q ss_pred             --C------C---CCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEEC--------C-eEEEEEcCCCeEEEEE
Q 022387          151 --P------Q---YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE--------Q-KIFVYNFADLKLLHQI  210 (298)
Q Consensus       151 --~------~---~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~--------~-~I~iwd~~~~~~i~~~  210 (298)
                        .      .   -....|.+||+.+++.+..+... .+..+.|+++.+++...        . ...||.+.+++ +..+
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l  213 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-EEKM  213 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-EEEE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-eEEe
Confidence              0      0   01357999999988764444443 78888999987444331        1 33444443444 3444


Q ss_pred             eccCCCcceEEEEeCCCCeEEEEecCC-------CceEEEEEcCCcceEeecccccceeE-EEECCCCCEEEEEeCCCCE
Q 022387          211 ETIANPKGLCAVSQGVGSLVLVCPGLQ-------KGQVRVEHYASKRTKFIMAHDSRIAC-FALTQDGQLLATSSTKGTL  282 (298)
Q Consensus       211 ~~~~~~~~~~~~s~~~d~~~la~sGs~-------dg~v~i~~~~~~~~~~~~~H~~~V~~-l~fspdg~~lAt~S~Dgt~  282 (298)
                      ..+   .....++++  +..|++.+..       ...|.+|+ ..+.......|...|.. ++|+ || ++++++.|+. 
T Consensus       214 ~~~---~~~~~~spd--g~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-  284 (347)
T 2gop_A          214 FEK---VSFYAVDSD--GERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-  284 (347)
T ss_dssp             EEE---ESEEEEEEC--SSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-
T ss_pred             ccC---cceeeECCC--CCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-
Confidence            433   223334554  4555543332       24677777 33333344567788886 9999 99 9999999998 


Q ss_pred             EEEEECCCCcE
Q 022387          283 VRIFNTLDGTL  293 (298)
Q Consensus       283 IrIWd~~tg~~  293 (298)
                      ++|| +.+|+.
T Consensus       285 ~~l~-~~~g~~  294 (347)
T 2gop_A          285 VNLY-IWDGEI  294 (347)
T ss_dssp             EEEE-EESSSE
T ss_pred             EEEE-EcCCce
Confidence            9999 886654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.39  E-value=1e-10  Score=105.48  Aligned_cols=197  Identities=10%  Similarity=0.005  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCCE--EEEEc-------------C-CeEEEEEcCC-CceEEEEee---ecCCceEEEEEecCCCEEEEEeC
Q 022387           88 LLHISFNQDHGC--FAAGT-------------D-HGFRIYNCDP-FREIFRRDF---ERGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        88 V~~v~fs~dg~~--lasgs-------------~-~gi~vw~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      +.+++|+|||++  ++++.             . +.+.+|+++. ++.......   .+...+..+.+++++..++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            445889999994  55553             3 4588999975 333222211   12346777888888887776653


Q ss_pred             CCCCCCCCCeEEEEeCC-CCcEE--EEeec---CCceEEEEEeCC--eEEEEE--CCeEEEEEcC--CCeEE---EEEec
Q 022387          148 GPDPQYPLNKVMIWDDH-QSRCI--GELSF---RSEVRSVKLRRD--RIIVVL--EQKIFVYNFA--DLKLL---HQIET  212 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~-~~~~~--~~~~~---~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~--~~~~i---~~~~~  212 (298)
                      +      ++.|++||+. +++..  ..+..   ...+..+.|+++  .++++.  ++.|.+|++.  +++..   ..+..
T Consensus       165 ~------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  238 (365)
T 1jof_A          165 T------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             T------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             C------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence            2      4789999998 67643  33432   345788999986  455555  3799999874  45542   23332


Q ss_pred             cCCC----c-------ceEEEE-eCCCCeEEEEecCCCc-----eEEEEEcC-CcceEe----ecccccceeEEEECC--
Q 022387          213 IANP----K-------GLCAVS-QGVGSLVLVCPGLQKG-----QVRVEHYA-SKRTKF----IMAHDSRIACFALTQ--  268 (298)
Q Consensus       213 ~~~~----~-------~~~~~s-~~~d~~~la~sGs~dg-----~v~i~~~~-~~~~~~----~~~H~~~V~~l~fsp--  268 (298)
                      ....    .       ....+. .++|+.+|+++...+.     .|.+|++. .+.+..    +..+...+..++|+|  
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~  318 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence            1110    1       234455 5566676665443333     89999985 444432    333566788999999  


Q ss_pred             -CCCEEEEEeCC-CCEEEEEECCCC
Q 022387          269 -DGQLLATSSTK-GTLVRIFNTLDG  291 (298)
Q Consensus       269 -dg~~lAt~S~D-gt~IrIWd~~tg  291 (298)
                       ||++|++++.+ ++ |+||++...
T Consensus       319 ~dg~~l~v~~~~~~~-v~v~~~~~~  342 (365)
T 1jof_A          319 WSDEWMAITDDQEGW-LEIYRWKDE  342 (365)
T ss_dssp             TCTTEEEEECSSSCE-EEEEEEETT
T ss_pred             cCCCEEEEEEcCCCe-EEEEEEchh
Confidence             89999999875 67 999998766

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.38  E-value=1.9e-10  Score=102.31  Aligned_cols=202  Identities=8%  Similarity=0.009  Sum_probs=133.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-------------------------eEEEEEcCCCceEEEEeeecCCceEEEEEecCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDH-------------------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN  140 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~-------------------------gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (298)
                      ..|.+|+|+++|++++++..+                         .+.+||.++++........+......+.+..+++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            479999999999999888766                         4789998877654332210122456677777777


Q ss_pred             EEEEEeCCCCCCCCCCeEEEEeCCCCc-EEEEeec----------CCceEEEEEeC--CeEEEEE---CCeEEEEEcCCC
Q 022387          141 ILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF----------RSEVRSVKLRR--DRIIVVL---EQKIFVYNFADL  204 (298)
Q Consensus       141 ~~~~~~~~~~~~~~d~~v~iWD~~~~~-~~~~~~~----------~~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~  204 (298)
                      ++++..       .++.|++||..... .+..+..          ......+++++  ..++++.   ++.|++|| .++
T Consensus       104 l~v~d~-------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A          104 YWVTDV-------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EEEEET-------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EEEEEC-------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            444433       45889999986542 4444421          12577899986  4555554   36999999 567


Q ss_pred             eEEEEEeccCCC--------cceEEEEeCCC-CeEEEEecCCCceEEEEEcCC-cceEee--cccccceeEEEECC----
Q 022387          205 KLLHQIETIANP--------KGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYAS-KRTKFI--MAHDSRIACFALTQ----  268 (298)
Q Consensus       205 ~~i~~~~~~~~~--------~~~~~~s~~~d-~~~la~sGs~dg~v~i~~~~~-~~~~~~--~~H~~~V~~l~fsp----  268 (298)
                      +.+..+......        .....+..+++ +.+++ +...++.|++|+..+ +.+..+  ..+...+..++|+|    
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEE
Confidence            777776432211        11233444444 46665 478899999999984 444444  45667899999999    


Q ss_pred             --CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          269 --DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       269 --dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                        +|+.+++.+.+.+ |++||+.+|+++..+
T Consensus       255 ~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVF  284 (329)
T ss_dssp             EEECCCCTTCSCCCC-EEEEETTTCCEEEEE
T ss_pred             EeCCCEEeccCCCcE-EEEEEcCCCeEEEEE
Confidence              4444444445558 999999999988764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.36  E-value=1.3e-12  Score=127.95  Aligned_cols=194  Identities=8%  Similarity=-0.018  Sum_probs=123.3

Q ss_pred             CeEEEEEcCCCCEEEEEcC----------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~----------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      .|.+++|||||++||++++          ..+++|++++++.+....+  ...+..+.+++++..++++.        ++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~--------~~  130 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY--------QN  130 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE--------TT
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE--------CC
Confidence            4789999999999998875          4488999988764211222  34567788999999998876        47


Q ss_pred             eEEEEeCCCCcEEEEeecC-C-ce-----------------EEEEEeCC--eEEEEE-CC--------------------
Q 022387          157 KVMIWDDHQSRCIGELSFR-S-EV-----------------RSVKLRRD--RIIVVL-EQ--------------------  194 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~-~-~v-----------------~~v~~~~~--~l~v~~-~~--------------------  194 (298)
                      +|++||+.+++..+..... . .+                 .++.|+++  .++.+. ++                    
T Consensus       131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            8999999888765432111 1 12                 47889886  454443 21                    


Q ss_pred             --------------eEEEEEcCCCeEE--EEE------eccCCCcceEEEEeCCCCeEEEEe-cCCC--ceEEEEE----
Q 022387          195 --------------KIFVYNFADLKLL--HQI------ETIANPKGLCAVSQGVGSLVLVCP-GLQK--GQVRVEH----  245 (298)
Q Consensus       195 --------------~I~iwd~~~~~~i--~~~------~~~~~~~~~~~~s~~~d~~~la~s-Gs~d--g~v~i~~----  245 (298)
                                    .|++||+.+++.+  ..+      ..+...+  ..+.+.+|+.+++.. ...+  ..|.+|+    
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF--SWLTWVTDERVCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE--EEEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE--EEeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence                          7889999877642  111      1222223  344455556666531 1122  3477788    


Q ss_pred             cCCcceE-ee----ccccccee-----EEEECCCCCEEEE--EeCCCC-EEEEEECCCCc
Q 022387          246 YASKRTK-FI----MAHDSRIA-----CFALTQDGQLLAT--SSTKGT-LVRIFNTLDGT  292 (298)
Q Consensus       246 ~~~~~~~-~~----~~H~~~V~-----~l~fspdg~~lAt--~S~Dgt-~IrIWd~~tg~  292 (298)
                      ..+.... .+    ..|...|.     .++|+|||+.|+.  +..+|. .|.+||+.+++
T Consensus       289 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             SSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            6555443 33    36777777     8999999996554  445553 16666776665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.32  E-value=1.1e-09  Score=97.50  Aligned_cols=196  Identities=11%  Similarity=0.129  Sum_probs=132.9

Q ss_pred             CCeEEEEEcCCCCEEEEE-cCCeEEEEEcCCCceEEEEeeecCC------ceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           86 PTLLHISFNQDHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGG------GIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasg-s~~gi~vw~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .....++|+++|+++++. .++.+.+||..+.+.......  ..      ....+.+  ....+.++..+     .+++|
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~--g~~~~~~~~p~~i~~--~~~~lyv~~~~-----~~~~v  154 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC--PDMDMESGSTEQMVQ--YGKYVYVNCWS-----YQNRI  154 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC--TTCCTTTCBCCCEEE--ETTEEEEEECT-----TCCEE
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc--CCccccCCCcceEEE--ECCEEEEEcCC-----CCCEE
Confidence            468899999999655555 246688999998876555543  22      2333333  45555555422     25889


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC-eEEEEEC------------CeEEEEEcCCCeEEEEEeccC-CCcceEEEEe
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLE------------QKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ  224 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~-~l~v~~~------------~~I~iwd~~~~~~i~~~~~~~-~~~~~~~~s~  224 (298)
                      .++|..+++.+.++........+.++++ .++++..            +.|.++|..+++...++.... .....+++++
T Consensus       155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG  234 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT
T ss_pred             EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec
Confidence            9999999998888877666667788774 4444432            479999999998887776432 2233445544


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCcceE---eecccccceeEEEECC-CCCEEEEE----eCCCCEEEEEECCCCcEEEe
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQ-DGQLLATS----STKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~~~H~~~V~~l~fsp-dg~~lAt~----S~Dgt~IrIWd~~tg~~l~~  296 (298)
                        ++..+.++..   .|.++|..+..+.   .+..+......|+++| +++++++.    ..+++ |.+||.. |+++++
T Consensus       235 --d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~-V~v~d~~-g~~~~~  307 (328)
T 3dsm_A          235 --TRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI-VYRYSPQ-GKLIDE  307 (328)
T ss_dssp             --TSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE-EEEECTT-CCEEEE
T ss_pred             --CCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE-EEEECCC-CCEEEE
Confidence              4455543222   7888888765542   1222246799999999 67888887    67888 9999998 998877


Q ss_pred             c
Q 022387          297 G  297 (298)
Q Consensus       297 ~  297 (298)
                      +
T Consensus       308 i  308 (328)
T 3dsm_A          308 F  308 (328)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.31  E-value=7.9e-10  Score=98.25  Aligned_cols=196  Identities=11%  Similarity=0.077  Sum_probs=129.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCc-eEEEEee--------ecCCceEEEEEec-CCCEEEEEeCCCCCCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR-EIFRRDF--------ERGGGIGVVEMLF-RCNILALVGGGPDPQYP  154 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~-~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  154 (298)
                      .....++|+++|+++++... +.|++|+.+... .+.....        .+......+.+.+ ++..+ ++.+.     .
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly-v~d~~-----~  164 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF-VSDGY-----C  164 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE-EEECS-----S
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE-EEeCC-----C
Confidence            47889999999998888876 568899876542 2222210        0112455677776 44444 43321     2


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-----------CceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcce
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-----------SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGL  219 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-----------~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~  219 (298)
                      ++.|++|| .+++.+..+...           .....++++++  .++++.  ++.|++||..+++.+.++.........
T Consensus       165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            58899999 566666665421           13678899875  555654  379999999888888888543222222


Q ss_pred             EEEEeCCCCeEEEEe------cCCCceEEEEEcCCcceE-ee---cccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          220 CAVSQGVGSLVLVCP------GLQKGQVRVEHYASKRTK-FI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       220 ~~~s~~~d~~~la~s------Gs~dg~v~i~~~~~~~~~-~~---~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..+...+ +.+++..      ...+..|.+|+.....+. .+   .+|...+..|+|+|+|.++++.+.+++ |++|++.
T Consensus       244 ~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~-I~~~~~~  321 (329)
T 3fvz_A          244 FAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT-VWKFTLT  321 (329)
T ss_dssp             EEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC-EEEEEEE
T ss_pred             ceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE-EEEEeCC
Confidence            3333333 3333322      344568999998766554 44   467788999999999999999999999 9999976


Q ss_pred             C
Q 022387          290 D  290 (298)
Q Consensus       290 t  290 (298)
                      .
T Consensus       322 ~  322 (329)
T 3fvz_A          322 E  322 (329)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.29  E-value=2.2e-10  Score=103.16  Aligned_cols=207  Identities=13%  Similarity=0.052  Sum_probs=121.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEE--ecCCCEEEEEeCCC-C---------
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEM--LFRCNILALVGGGP-D---------  150 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~---------  150 (298)
                      +...+..++|+|||++|+.++. ..+.+|++++.+....... +.+......+  ..++..++...... +         
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            3334446789999999998886 4688999998876544443 2332322332  45565554321000 0         


Q ss_pred             -----CCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeC-Ce--EEEEEC-------CeEEEEEcCCCeEEEEEeccCC
Q 022387          151 -----PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DR--IIVVLE-------QKIFVYNFADLKLLHQIETIAN  215 (298)
Q Consensus       151 -----~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~--l~v~~~-------~~I~iwd~~~~~~i~~~~~~~~  215 (298)
                           ....+..|.+||+.+++..........+..+.|++ +.  ++.+..       ..|.++|+...+. +.+..+..
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~  236 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAE  236 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCT
T ss_pred             hhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCC
Confidence                 00034779999999987765556666788899998 64  333432       2677788765443 33333322


Q ss_pred             CcceEEEEeCCCCeEEEEecCCC----ceEEEEEcCCcceEee---ccccc---ceeEEEECCCCCEEEEE---------
Q 022387          216 PKGLCAVSQGVGSLVLVCPGLQK----GQVRVEHYASKRTKFI---MAHDS---RIACFALTQDGQLLATS---------  276 (298)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~d----g~v~i~~~~~~~~~~~---~~H~~---~V~~l~fspdg~~lAt~---------  276 (298)
                      ........+++|+..|++.+..+    +.|.+|+..++....+   .++..   ....++|+|||++||..         
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  316 (388)
T 3pe7_A          237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI  316 (388)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred             CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence            12233444555666565433332    2488899987764433   32111   12334799999988864         


Q ss_pred             eCCCCEEEEEECCCCcE
Q 022387          277 STKGTLVRIFNTLDGTL  293 (298)
Q Consensus       277 S~Dgt~IrIWd~~tg~~  293 (298)
                      ..+.. |.+||+.+++.
T Consensus       317 ~~~~~-i~~~d~~~~~~  332 (388)
T 3pe7_A          317 ENDPF-LYVFNMKNGTQ  332 (388)
T ss_dssp             CCCCE-EEEEETTTTEE
T ss_pred             CCCCE-EEEEeccCCce
Confidence            34556 99999998865

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.28  E-value=6.4e-11  Score=106.60  Aligned_cols=194  Identities=10%  Similarity=-0.092  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCEEEEEcCC----eEEEEEcCCCceEEEEeeecCCce-EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           88 LLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~----gi~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      +..++|+|||++||.....    .+.+|+.++.+......  +.... ....|++++..+++++       .++.|.+||
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~-------~~~~l~~~d  108 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE--GKGDNTFGGFISTDERAFFYVK-------NELNLMKVD  108 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC--SSCBCTTTCEECTTSSEEEEEE-------TTTEEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec--CCCCccccceECCCCCEEEEEE-------cCCcEEEEE
Confidence            5567899999998877542    36677877765422111  12221 2256788999998888       456899999


Q ss_pred             CCCCcEEEEeecCCce----EEEE----------------EeCC--eEEE------EECCeEEEEEcCCCeEEEEEeccC
Q 022387          163 DHQSRCIGELSFRSEV----RSVK----------------LRRD--RIIV------VLEQKIFVYNFADLKLLHQIETIA  214 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v----~~v~----------------~~~~--~l~v------~~~~~I~iwd~~~~~~i~~~~~~~  214 (298)
                      +.+++...........    ..+.                ++++  .+++      .....|.+||+.+++..... .+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~  187 (396)
T 3c5m_A          109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT  187 (396)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred             CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence            9988765544433221    1121                1221  1111      12348999999887754433 333


Q ss_pred             CCcceEEEEeCCCCeEEEEecCC-C----ceEEEEEcCCcceEeecccc--cceeEEEECCCCCEEEEEeCC-----CCE
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQ-K----GQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLATSSTK-----GTL  282 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~-d----g~v~i~~~~~~~~~~~~~H~--~~V~~l~fspdg~~lAt~S~D-----gt~  282 (298)
                      ..+..+.++++ ++..|++.... .    ..|.+++........+..+.  ..+..++|+|||++||.++.+     +. 
T Consensus       188 ~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-  265 (396)
T 3c5m_A          188 AWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV-  265 (396)
T ss_dssp             SCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-
T ss_pred             cccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce-
Confidence            44445566551 34555543222 1    46777888766555554442  368899999999988887654     45 


Q ss_pred             EEEEECCCCcE
Q 022387          283 VRIFNTLDGTL  293 (298)
Q Consensus       283 IrIWd~~tg~~  293 (298)
                      |++||+.+|+.
T Consensus       266 l~~~d~~~g~~  276 (396)
T 3c5m_A          266 IYKANPETLEN  276 (396)
T ss_dssp             EEEECTTTCCE
T ss_pred             EEEEECCCCCe
Confidence            99999998865

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.28  E-value=9e-10  Score=107.99  Aligned_cols=209  Identities=10%  Similarity=0.047  Sum_probs=133.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C-----eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC------
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------  151 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~-----gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  151 (298)
                      +...+..++|||||++||.+.+ +     .|++||+++++..... . ....+..+.|++++..++++......      
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-L-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-E-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-c-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3336889999999999997654 3     5789999988754322 1 12234567889999988887732210      


Q ss_pred             ---CCCCCeEEEEeCCCCcE--EEEeec---CCceEEEEEeCC--eEEEEE------CCeEEEEEcCC------Ce-EEE
Q 022387          152 ---QYPLNKVMIWDDHQSRC--IGELSF---RSEVRSVKLRRD--RIIVVL------EQKIFVYNFAD------LK-LLH  208 (298)
Q Consensus       152 ---~~~d~~v~iWD~~~~~~--~~~~~~---~~~v~~v~~~~~--~l~v~~------~~~I~iwd~~~------~~-~i~  208 (298)
                         ......|++|++.+++.  ...+..   ...+..+.++++  .+++..      ...|++||+.+      ++ .+.
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence               01134599999988762  122222   224677888875  344443      35899999975      32 355


Q ss_pred             EEeccCCCcceEEEEeCCCCeEEEEecCC---CceEEEEEcCCcc---eEeeccccc--ceeEEEECCCCCEEEEEeCCC
Q 022387          209 QIETIANPKGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASKR---TKFIMAHDS--RIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       209 ~~~~~~~~~~~~~~s~~~d~~~la~sGs~---dg~v~i~~~~~~~---~~~~~~H~~--~V~~l~fspdg~~lAt~S~Dg  280 (298)
                      .+..+..... ..++++++  .|++.+..   ++.|.+|+.....   ...+..|..  .|..++|++++.++++...|+
T Consensus       281 ~l~~~~~~~~-~~~s~dg~--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          281 KLIDNFEGEY-DYVTNEGT--VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEECSSSSCE-EEEEEETT--EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             EeeCCCCcEE-EEEeccCC--EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            6665544332 34666553  33333333   3478889887643   345555644  688999998889999999998


Q ss_pred             C-EEEEEECCCCcEEEec
Q 022387          281 T-LVRIFNTLDGTLLQEG  297 (298)
Q Consensus       281 t-~IrIWd~~tg~~l~~~  297 (298)
                      . .|++||+.+|+.++++
T Consensus       358 ~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             EEEEEEEETTTCCEEEEE
T ss_pred             EEEEEEEECCCCCEEEec
Confidence            5 1566777788766553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.28  E-value=1e-09  Score=95.53  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=133.1

Q ss_pred             CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecC-CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEee
Q 022387           96 DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (298)
Q Consensus        96 dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~  173 (298)
                      .+++|++++.++ +.+||.++++.++.... +. .....+.+.++++.++  +       .++.|..||. +++.+.++.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~~~~~~pdG~ilv--s-------~~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-EKGWECNSVAATKAGEILF--S-------YSKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-CTTCCCCEEEECTTSCEEE--E-------CBSEEEEECT-TSCEEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-CccCCCcCeEECCCCCEEE--e-------CCCCEEEECC-CCCEEEEEc
Confidence            467888888754 78999999998877764 22 2466777888888766  3       2477999999 888888887


Q ss_pred             cC--CceEEEEEeCCe-EEEE-EC--CeEEEEEcCCCeEEEEEeccCC---C-cceEEEEeCCCCeEEEEecCCCceEEE
Q 022387          174 FR--SEVRSVKLRRDR-IIVV-LE--QKIFVYNFADLKLLHQIETIAN---P-KGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (298)
Q Consensus       174 ~~--~~v~~v~~~~~~-l~v~-~~--~~I~iwd~~~~~~i~~~~~~~~---~-~~~~~~s~~~d~~~la~sGs~dg~v~i  243 (298)
                      ..  ..+.++.+.++. ++++ ..  +.|..+|. +++.+.++.....   + .....++..+++.++++ ...++.|..
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~~~~~v~~  150 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LFATSEVRE  150 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ETTTTEEEE
T ss_pred             CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ecCCCEEEE
Confidence            64  366777776643 3333 32  35655664 7888887763211   0 01112234556678774 788999999


Q ss_pred             EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       244 ~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.+.+.+.++..+ ..+.++.+.++|.++++++.+++ |..||..+|+.+.+|
T Consensus       151 ~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          151 IAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRV  202 (276)
T ss_dssp             ECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEE
T ss_pred             ECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEe
Confidence            99986656666654 45677889999999999998888 999999999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.28  E-value=6.3e-09  Score=92.48  Aligned_cols=191  Identities=7%  Similarity=-0.050  Sum_probs=133.0

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ....+.+.. ++++++... +.+.+||..+.+.+.+...  ......+.+..++ .+.++..      .++.|.+||..+
T Consensus        45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g-~lyv~~~------~~~~v~~iD~~t  114 (328)
T 3dsm_A           45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDE-KAYVTQI------WDYRIFIINPKT  114 (328)
T ss_dssp             CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETT-EEEEEEB------SCSEEEEEETTT
T ss_pred             cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCC-eEEEEEC------CCCeEEEEECCC
Confidence            467787753 344444443 6688999999887665542  4556666666665 4433331      258899999999


Q ss_pred             CcEEEEeecCC------ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          166 SRCIGELSFRS------EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       166 ~~~~~~~~~~~------~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ++....+....      ....+.+..+.+.++.   ++.|.++|+.+++.+.++.....+. .+++  ++++.++++ +.
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~-~i~~--~~dG~l~v~-~~  190 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT-SLVM--DKYNKMWTI-TD  190 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC-CCEE--CTTSEEEEE-BC
T ss_pred             CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc-ceEE--cCCCCEEEE-EC
Confidence            98887777554      5556667777888775   5799999999999988887655443 3344  455676664 44


Q ss_pred             CC----------ceEEEEEcCCcceE-eeccc-ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          237 QK----------GQVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       237 ~d----------g~v~i~~~~~~~~~-~~~~H-~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      .+          +.|.++|..+..+. .+... ...++.|+|+||+++|..+..  + |.+||..+++..
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~  257 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVP  257 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCcee
Confidence            33          78999998766544 44322 236899999999988877754  7 999999988753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.27  E-value=1e-08  Score=90.49  Aligned_cols=203  Identities=8%  Similarity=-0.006  Sum_probs=126.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ...+.+++|+++|++++++.. +++.+|+.++.+....... +...+..+.+..++++++...++..   ..+.|.+||.
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~l~v~~~~~~~---~~~~i~~~d~  119 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAATE  119 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEECT
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCcEEEEeCCCCC---CCceEEEEeC
Confidence            346789999999998888876 5688999887664332211 2456777777777765555432100   1257999999


Q ss_pred             CCCcEEEEee---cCCceEEEEEeCCe-EEEEEC--------CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          164 HQSRCIGELS---FRSEVRSVKLRRDR-IIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       164 ~~~~~~~~~~---~~~~v~~v~~~~~~-l~v~~~--------~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      .++.....+.   ....+..+.++++. +.++..        +.|..||..+.+.. .+......  ...+..++++..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~--~~~i~~~~dg~~l  196 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISV--ANGIALSTDEKVL  196 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESS--EEEEEECTTSSEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCc--ccceEECCCCCEE
Confidence            8876543332   22357888888754 444433        34555555444432 33222122  2334445555544


Q ss_pred             EEecCCCceEEEEEcCC--cceEe--------ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          232 VCPGLQKGQVRVEHYAS--KRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~--~~~~~--------~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .++.+.++.|.+|+...  .....        +.++ ..+..|+++++|+++++...++. |++||. +++.+.++
T Consensus       197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQI  269 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEE
T ss_pred             EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEE
Confidence            44466678999998853  22221        1222 46889999999999999888888 999998 57666554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=6.7e-10  Score=101.25  Aligned_cols=170  Identities=9%  Similarity=0.093  Sum_probs=121.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCc-----------eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-----------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      +++.+++++...+|++|+.++++||+++..+           ......+  .+ +..+.+  +++.++++.        +
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~l--p~-V~~l~f--d~~~L~v~~--------~  105 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI--PD-VIFVCF--HGDQVLVST--------R  105 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC--TT-EEEEEE--ETTEEEEEE--------S
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeC--CC-eeEEEE--CCCEEEEEc--------C
Confidence            6888999999999999999999999865433           1122332  44 776666  777777763        4


Q ss_pred             CeEEEEeCCCCcEEEEe-ecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~-~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +.|++||+.+......+ .+...+.++.+.+..++++. +|.|.+||+.+.+... +.     ..+.++++++++  +++
T Consensus       106 ~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~~-----~~Vs~v~WSpkG--~~v  177 (388)
T 1xip_A          106 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-LA-----QNVTSFDVTNSQ--LAV  177 (388)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-EE-----ESEEEEEECSSE--EEE
T ss_pred             CcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-cc-----CCceEEEEcCCc--eEE
Confidence            78999999875543333 33446777776655566665 6999999998777643 22     245567777766  343


Q ss_pred             ecCCCceEEEEEcCCcce---Eee------c---ccccceeEEEECCCCCEEEEEeC
Q 022387          234 PGLQKGQVRVEHYASKRT---KFI------M---AHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~---~~~------~---~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                       |..||.+++|+..+..+   .++      .   +|...|.+|+|.+++.+|++-..
T Consensus       178 -g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          178 -LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             -EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             -EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence             78999999998877663   344      3   47888999999999999998543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.26  E-value=2.6e-10  Score=110.46  Aligned_cols=198  Identities=10%  Similarity=-0.033  Sum_probs=118.9

Q ss_pred             EEEEc--CCCCE-EEEEcCCeEEEEEcCCC----ceEEEEeee----cCCceEEEEEecCCCEEEEEeCCCC---CCCCC
Q 022387           90 HISFN--QDHGC-FAAGTDHGFRIYNCDPF----REIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPD---PQYPL  155 (298)
Q Consensus        90 ~v~fs--~dg~~-lasgs~~gi~vw~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d  155 (298)
                      ...|+  |||++ ||.++++..+||.++..    +........    +...+..+.+++++..+++++....   .....
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            34454  99998 88877644445554432    332222210    1234566788899998888772200   00011


Q ss_pred             CeEEEEeCCC------CcEEEEe-ecCCceEEEEEeCCe--EEEEE-C--------CeEEEEEcC-CC--eEEEEEec-c
Q 022387          156 NKVMIWDDHQ------SRCIGEL-SFRSEVRSVKLRRDR--IIVVL-E--------QKIFVYNFA-DL--KLLHQIET-I  213 (298)
Q Consensus       156 ~~v~iWD~~~------~~~~~~~-~~~~~v~~v~~~~~~--l~v~~-~--------~~I~iwd~~-~~--~~i~~~~~-~  213 (298)
                      .+|++||+.+      ++..... .....+..+.|+++.  ++.+. +        ..|++||+. ++  .....+.. +
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            5799999988      5544333 334567778898864  54443 3        379999998 56  23334433 3


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeecccc-cc--------eeEEEECCCCCEEEEEeCCCCE
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHD-SR--------IACFALTQDGQLLATSSTKGTL  282 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~-~~--------V~~l~fspdg~~lAt~S~Dgt~  282 (298)
                      ...+...+++  +|+.+++ +++.+|.  |.+|+...+....+..+. ..        +.+++|+|+++++++++. ++ 
T Consensus       241 ~~~~~~~~~s--pdg~l~~-~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-  315 (662)
T 3azo_A          241 EEAIAQAEWA--PDGSLIV-ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-  315 (662)
T ss_dssp             TBCEEEEEEC--TTSCEEE-EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-
T ss_pred             CceEcceEEC--CCCeEEE-EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-
Confidence            3334444544  4556554 4677784  444665455555443332 22        578999999999999998 98 


Q ss_pred             EEEE--ECCCCc
Q 022387          283 VRIF--NTLDGT  292 (298)
Q Consensus       283 IrIW--d~~tg~  292 (298)
                      ++||  |+.+++
T Consensus       316 ~~l~~~d~~~~~  327 (662)
T 3azo_A          316 AVLGILDPESGE  327 (662)
T ss_dssp             CEEEEEETTTTE
T ss_pred             cEEEEEECCCCc
Confidence            9999  555554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.25  E-value=1.5e-10  Score=114.14  Aligned_cols=192  Identities=13%  Similarity=0.043  Sum_probs=122.4

Q ss_pred             EEEEEcCCCCEEEEEcCC----------eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           89 LHISFNQDHGCFAAGTDH----------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~----------gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..++|||||++||.++++          .+.+||+++++......  +.+.+....+++++..+|++.        ++.|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~--~~~~~~~~~~SPdG~~la~~~--------~~~i  134 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER--IPNNTQWVTWSPVGHKLAYVW--------NNDI  134 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCTTEEEEEECSSTTCEEEEE--------TTEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc--CCCcceeeEECCCCCEEEEEE--------CCeE
Confidence            458999999999988873          24599999876432111  345688889999999999886        4789


Q ss_pred             EEEeCCCCcEEEEeecCC---ce-----------------EEEEEeCCe--EEEEE-C----------------------
Q 022387          159 MIWDDHQSRCIGELSFRS---EV-----------------RSVKLRRDR--IIVVL-E----------------------  193 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~---~v-----------------~~v~~~~~~--l~v~~-~----------------------  193 (298)
                      .+||+.+++..+ +...+   .+                 ..+.|+++.  ++... +                      
T Consensus       135 ~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          135 YVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             EEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             EEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            999998877543 22211   11                 236787753  33321 1                      


Q ss_pred             --------------CeEEEEEcCC---Ce--EEEEEec------cCCCcceEEEEeCCCCeEEEEe---cCCCceEEEEE
Q 022387          194 --------------QKIFVYNFAD---LK--LLHQIET------IANPKGLCAVSQGVGSLVLVCP---GLQKGQVRVEH  245 (298)
Q Consensus       194 --------------~~I~iwd~~~---~~--~i~~~~~------~~~~~~~~~~s~~~d~~~la~s---Gs~dg~v~i~~  245 (298)
                                    .+|++||+.+   ++  ...++..      +...+..+++++  |+.++++.   +..+..|.+|+
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp--dg~~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT--QERISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE--TTEEEEEEEESSTTEEEEEEEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC--CCeEEEEEeCCCCCEEEEEEEE
Confidence                          1588899987   63  2234432      323333445555  45655542   23345788899


Q ss_pred             cCCcc-------eEee--ccccccee-----EEEECCCCCEEE-EEeCC-C-CEEEEEECCCCcE
Q 022387          246 YASKR-------TKFI--MAHDSRIA-----CFALTQDGQLLA-TSSTK-G-TLVRIFNTLDGTL  293 (298)
Q Consensus       246 ~~~~~-------~~~~--~~H~~~V~-----~l~fspdg~~lA-t~S~D-g-t~IrIWd~~tg~~  293 (298)
                      ..++.       ...+  ..|...|.     .++|||||+.|+ ..|.+ | ..|.+||+.++++
T Consensus       292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            87654       2222  45666655     789999999888 77643 3 2288888887654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.23  E-value=8.5e-09  Score=89.66  Aligned_cols=194  Identities=8%  Similarity=-0.077  Sum_probs=124.9

Q ss_pred             CCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           85 PPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        85 ~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..-..+++|+|+|+ +++++.. +++.+|+.+.. . ..... +...+..+.+..++.+++...       .++.|.+||
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~~-~~~~~~~l~~~~dg~l~v~~~-------~~~~i~~~d   96 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEMH-PSHHQNGHCLNKQGHLIACSH-------GLRRLERQR   96 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEES-SCSSEEEEEECTTCCEEEEET-------TTTEEEEEC
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEEC-CCCCcceeeECCCCcEEEEec-------CCCeEEEEc
Confidence            34678999999998 6777776 66889998876 2 22222 345567777777777654443       347899999


Q ss_pred             CCCCcEEEEeec-C----CceEEEEEeCCeEEEEE--------------------CCeEEEEEcCCCeEEEEEeccCCCc
Q 022387          163 DHQSRCIGELSF-R----SEVRSVKLRRDRIIVVL--------------------EQKIFVYNFADLKLLHQIETIANPK  217 (298)
Q Consensus       163 ~~~~~~~~~~~~-~----~~v~~v~~~~~~l~v~~--------------------~~~I~iwd~~~~~~i~~~~~~~~~~  217 (298)
                      ..+++....... .    ..+..+.++++..+.++                    .+.|..++.. ++ +..+..+....
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~  174 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKP  174 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCC
Confidence            988775433221 1    23456788776433332                    1345555544 33 33444332222


Q ss_pred             ceEEEEeCCCCeEEEEecCCCceEEEEEcC-Ccce----EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~----~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ..++  .++++.++ ++.+.++.|.+|+.. ...+    ..+..+...+..|+++++|+++++.  ++. |++||.. |+
T Consensus       175 ~gi~--~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g~  247 (296)
T 3e5z_A          175 NGLA--FLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-GD  247 (296)
T ss_dssp             EEEE--ECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-SC
T ss_pred             ccEE--ECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-CC
Confidence            3344  45566777 457888999999885 3333    2334456678899999999988887  777 9999986 77


Q ss_pred             EEEec
Q 022387          293 LLQEG  297 (298)
Q Consensus       293 ~l~~~  297 (298)
                      ++.++
T Consensus       248 ~~~~~  252 (296)
T 3e5z_A          248 ELGRV  252 (296)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.19  E-value=2.2e-08  Score=95.79  Aligned_cols=190  Identities=13%  Similarity=0.118  Sum_probs=133.8

Q ss_pred             CCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC--CCcEEEE
Q 022387           95 QDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGE  171 (298)
Q Consensus        95 ~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~--~~~~~~~  171 (298)
                      +.+.++++..+ +.+.++|.++.+.+.+...  ......+.+++++..+++++       .++.|.+||+.  +++.+.+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~-------~dg~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEc-------CCCeEEEEECCCCCCcEeEE
Confidence            44445566665 5588999999888766664  45566788899999888776       56899999996  7888888


Q ss_pred             eecCCceEEEEEe----CC--eEEEEE--CCeEEEEEcCCCeEEEEEeccC----------C-CcceEEEEeCCCCeEEE
Q 022387          172 LSFRSEVRSVKLR----RD--RIIVVL--EQKIFVYNFADLKLLHQIETIA----------N-PKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       172 ~~~~~~v~~v~~~----~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~----------~-~~~~~~~s~~~d~~~la  232 (298)
                      +........+.++    ++  .++++.  .++|.++|..+.+.++++....          . .+..+.++++  +..++
T Consensus       236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~--~~~~v  313 (567)
T 1qks_A          236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY--RPEFI  313 (567)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS--SSEEE
T ss_pred             EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC--CCEEE
Confidence            8876667788888    33  455554  4899999999999998887532          1 1122333333  23333


Q ss_pred             EecCCCceEEEEEcCCcc-eE-eecccccceeEEEECCCCCEEEEEe-CCCCEEEEEECCCCcEEEe
Q 022387          233 CPGLQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~-~~-~~~~H~~~V~~l~fspdg~~lAt~S-~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ++-...|.|.+.|+.... +. .-.........+.|+|||++|.++. .+++ |.|+|+.+++++..
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~  379 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAI  379 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEE
T ss_pred             EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEE
Confidence            345778999998876542 11 1112334577899999999887765 4566 99999999988754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.18  E-value=7.8e-10  Score=107.05  Aligned_cols=206  Identities=8%  Similarity=-0.081  Sum_probs=126.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-----------eEEEEEcCC------CceEEEEe-eecCCceEEEEEecCCCEEEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH-----------GFRIYNCDP------FREIFRRD-FERGGGIGVVEMLFRCNILALV  145 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~-----------gi~vw~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (298)
                      +...+..++|+|||++|++++.+           .+.+|+++.      .+.. ... . +...+..+.+++++..++++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~SpDG~~la~~  205 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDD-AHRFVTGPRLSPDGRQAVWL  205 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCS-CSSEECCCEECTTSSEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEec-CCCcccCceECCCCCEEEEE
Confidence            44578899999999999987754           477889887      4432 221 1 23344556788999988877


Q ss_pred             eCCC-CCCCCCCeEEEEeCC-CC---cEEEEeec-CCceEEEEEeCCe-EEEEEC--C--eEEEEEcCCCeEEEEEeccC
Q 022387          146 GGGP-DPQYPLNKVMIWDDH-QS---RCIGELSF-RSEVRSVKLRRDR-IIVVLE--Q--KIFVYNFADLKLLHQIETIA  214 (298)
Q Consensus       146 ~~~~-~~~~~d~~v~iWD~~-~~---~~~~~~~~-~~~v~~v~~~~~~-l~v~~~--~--~I~iwd~~~~~~i~~~~~~~  214 (298)
                      +... ...+...+|.+||+. ++   +....... ...+..+.|+++. +++..+  +  .|.+||+.+++.......+.
T Consensus       206 ~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          206 AWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             EECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred             ECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccc
Confidence            6321 111123579999998 56   33333333 3578889998753 444443  4  67777776665433222221


Q ss_pred             CC---c---ceEEEEeCCCCeEEEEecCCCceEEEE--EcCCcceEeecccccceeEE-EECCCCCEEEEEeCCCC-EEE
Q 022387          215 NP---K---GLCAVSQGVGSLVLVCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACF-ALTQDGQLLATSSTKGT-LVR  284 (298)
Q Consensus       215 ~~---~---~~~~~s~~~d~~~la~sGs~dg~v~i~--~~~~~~~~~~~~H~~~V~~l-~fspdg~~lAt~S~Dgt-~Ir  284 (298)
                      ..   .   ....+.+.+++.+++. ++. |.+++|  +...+.+..+..|...+..+ +++.+.-++++++.+.. .|.
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVV-HGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEE-EBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             cccCccccccCceEeEeCCCEEEEE-EEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            11   0   0123334445567664 666 888888  55556677888888888888 66655556666676654 144


Q ss_pred             EEECCCCcE
Q 022387          285 IFNTLDGTL  293 (298)
Q Consensus       285 IWd~~tg~~  293 (298)
                      +||+.++++
T Consensus       364 ~~d~~~g~~  372 (662)
T 3azo_A          364 ELDTVTGRA  372 (662)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCce
Confidence            446667764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.18  E-value=6.5e-10  Score=99.96  Aligned_cols=197  Identities=10%  Similarity=-0.003  Sum_probs=114.0

Q ss_pred             EEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEE---E----------------EEecCCCEEEEEeCCC
Q 022387           90 HISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGV---V----------------EMLFRCNILALVGGGP  149 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~  149 (298)
                      .+.|+|||++|+.++. +.+.+|++++.+....... +.+....   +                .+.++++.+++.... 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~-  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY-  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH-
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec-
Confidence            3789999999988776 5588999988765433332 1110000   0                011111111111100 


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeC-Ce--EEEEEC-------CeEEEEEcCCCeEEEEEeccCCCcce
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DR--IIVVLE-------QKIFVYNFADLKLLHQIETIANPKGL  219 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~--l~v~~~-------~~I~iwd~~~~~~i~~~~~~~~~~~~  219 (298)
                       ....+..|.+||+.+++..........+..+.|++ +.  ++.+.+       ..|.+||+...+. ..+..+......
T Consensus       163 -~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~  240 (396)
T 3c5m_A          163 -HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESC  240 (396)
T ss_dssp             -HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEE
T ss_pred             -cCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccc
Confidence             00134679999999988766555556788889988 32  444443       3688888865542 233222111223


Q ss_pred             EEEEeCCCCeEEEEecCC----CceEEEEEcCCcceEeecccccceeEEEECC-CCCEEEEEeC----------------
Q 022387          220 CAVSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSST----------------  278 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~----dg~v~i~~~~~~~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~----------------  278 (298)
                      ..+.+++|+..|++.+..    ++.|.+|+..++....+..... .. ++|+| ||++|+.++.                
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            334455566666553322    2458889988766544332222 33 89999 9999998652                


Q ss_pred             CCCEEEEEECCCCcE
Q 022387          279 KGTLVRIFNTLDGTL  293 (298)
Q Consensus       279 Dgt~IrIWd~~tg~~  293 (298)
                      +.. |.+||+.+++.
T Consensus       319 ~~~-i~~~d~~~~~~  332 (396)
T 3c5m_A          319 DPF-LYVLNTKAKSA  332 (396)
T ss_dssp             CCE-EEEEETTTTBC
T ss_pred             CCc-EEEEecccCce
Confidence            356 99999988764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.16  E-value=4.6e-08  Score=88.76  Aligned_cols=197  Identities=14%  Similarity=0.052  Sum_probs=116.5

Q ss_pred             EEEEcCCCCEEEEEc-----------CCeEEEEEcCCCceEEEEeee------cCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        90 ~v~fs~dg~~lasgs-----------~~gi~vw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .++|+|||++|+++.           ++.+.+||..+.+........      +......+.+++++..++++...    
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----
Confidence            799999999988875           245779999887765554430      01123456788888888887632    


Q ss_pred             CCCCeEEEEeCCCCcEEEE-eecCCceEEEEEeCCe--------------------------------------------
Q 022387          153 YPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDR--------------------------------------------  187 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~-~~~~~~v~~v~~~~~~--------------------------------------------  187 (298)
                       .++.|.++| .+++.+.+ +.....+.-....+..                                            
T Consensus       146 -~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          146 -AGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             -CCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEec
Confidence             247899999 99988877 6543221111111111                                            


Q ss_pred             ----EEEEECCeEEEEEcCCC--eEEEEEeccC--------CCcc--eEEEEeCCCCeEEEEecC---------CCceEE
Q 022387          188 ----IIVVLEQKIFVYNFADL--KLLHQIETIA--------NPKG--LCAVSQGVGSLVLVCPGL---------QKGQVR  242 (298)
Q Consensus       188 ----l~v~~~~~I~iwd~~~~--~~i~~~~~~~--------~~~~--~~~~s~~~d~~~la~sGs---------~dg~v~  242 (298)
                          +++...+.+.+.|+...  +.+..+....        .+.+  .++++++++..+++  ..         ..+.|.
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~--~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL--TSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE--eccCCcccccCCCCeEE
Confidence                11111234444444322  1122221100        1111  24444444322332  22         235788


Q ss_pred             EEEcCCcce-EeecccccceeEEEECCCCC-EEEEEe-CCCCEEEEEECCCCcEEEe
Q 022387          243 VEHYASKRT-KFIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       243 i~~~~~~~~-~~~~~H~~~V~~l~fspdg~-~lAt~S-~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +.|..+.++ .++. -......|+|+|||+ +|.++. .+++ |.|||+.+++.+++
T Consensus       302 VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~-V~ViD~~t~~vv~~  356 (373)
T 2mad_H          302 SVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQS  356 (373)
T ss_pred             EEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCe-EEEEECCCCCEEee
Confidence            888877655 4453 233689999999999 788877 4888 99999999998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.11  E-value=6.8e-09  Score=88.57  Aligned_cols=196  Identities=8%  Similarity=-0.032  Sum_probs=126.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      .+.+++++++|+++++..++++.+|+.+..... ............+.+..+++.++...       .++.|.+||..+.
T Consensus        68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-------~~~~i~~~~~~~~  139 (270)
T 1rwi_B           68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADR-------GNNRVVKLAAGSK  139 (270)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEG-------GGTEEEEECTTCC
T ss_pred             CcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEEC-------CCCEEEEEECCCc
Confidence            567899999999777666567888987664432 12111123456666666666444333       3478999987665


Q ss_pred             cEEEEe-ecCCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387          167 RCIGEL-SFRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (298)
Q Consensus       167 ~~~~~~-~~~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~  242 (298)
                      ...... .....+..+.++++ .+.++.  ++.|.+||............+.  .....+..++++.+++ +...++.|.
T Consensus       140 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~g~l~v-~~~~~~~v~  216 (270)
T 1rwi_B          140 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI--TAPWGIAVDEAGTVYV-TEHNTNQVV  216 (270)
T ss_dssp             SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC--CSEEEEEECTTCCEEE-EETTTSCEE
T ss_pred             eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC--CCceEEEECCCCCEEE-EECCCCcEE
Confidence            433221 11235667888763 455554  3799999987655432212111  2334555566666665 356688899


Q ss_pred             EEEcCCcceEeec-ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387          243 VEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (298)
Q Consensus       243 i~~~~~~~~~~~~-~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l  294 (298)
                      +++........+. .+...+.+|+++++|+++++.+.+++ |+++++...+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-v~~~~~~~~~~~  268 (270)
T 1rwi_B          217 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR-VVKLTSLEHHHH  268 (270)
T ss_dssp             EECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE-EEEECCCGGGSC
T ss_pred             EEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE-EEEEcCCCcccc
Confidence            9988765544332 34467999999999999999999998 999998876654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.11  E-value=1.9e-09  Score=98.28  Aligned_cols=146  Identities=14%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc-----------EEEEeecCCceEEEEEeCCeEEEEECCeE
Q 022387          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELSFRSEVRSVKLRRDRIIVVLEQKI  196 (298)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-----------~~~~~~~~~~v~~v~~~~~~l~v~~~~~I  196 (298)
                      ..+..+++.....+++.++.        ..+++|+....+           ....+.... |..+.|+...++++.++.|
T Consensus        38 ~~~nlLais~~~gll~a~~~--------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l  108 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASG--------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNAL  108 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEET--------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEE
T ss_pred             ccccEEEEcCCCCEEEEeCC--------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcE
Confidence            35677778877877777662        468889854322           223445556 9999997778888888999


Q ss_pred             EEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387          197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~  276 (298)
                      ++||+.+.....++..+...+  ..+.+-+. . +|+ ++.||.|.+|+++......   +...|+|+||||+|  ++.|
T Consensus       109 ~v~dv~sl~~~~~~~~~~~~v--~~i~~~~p-~-~av-~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          109 YSLDLEELSEFRTVTSFEKPV--FQLKNVNN-T-LVI-LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             EEEESSSTTCEEEEEECSSCE--EEEEECSS-E-EEE-EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEE
T ss_pred             EEEEchhhhccCccceeecce--eeEEecCC-C-EEE-EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEE
Confidence            999998776666666655443  34444332 2 443 6899999999998765433   56789999999999  6788


Q ss_pred             eCCCCEEEEEECCCCcE
Q 022387          277 STKGTLVRIFNTLDGTL  293 (298)
Q Consensus       277 S~Dgt~IrIWd~~tg~~  293 (298)
                      ..||+ |++|+...+++
T Consensus       179 ~~dg~-i~~~~~~~~~~  194 (388)
T 1xip_A          179 LKDRS-FQSFAWRNGEM  194 (388)
T ss_dssp             ETTSC-EEEEEEETTEE
T ss_pred             EcCCc-EEEEcCCCccc
Confidence            89999 99999887764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.09  E-value=4.4e-09  Score=92.83  Aligned_cols=192  Identities=13%  Similarity=0.098  Sum_probs=119.6

Q ss_pred             CCeEEEEEcCCCCEEEEEc-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..|.+++|++++..++..+ ++.+++|.-   +......- +......+.+..++.++++..       .++.|.+||..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~-------~~~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPWLEISK-KGLQLEGLNFDRQGQLFLLDV-------FEGNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEEEEEES-SCCCEEEEEECTTSCEEEEET-------TTCEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCccccc---ceeEEEec-cCccccCcEECCCCCEEEEEC-------CCCEEEEEeCC
Confidence            3577788998887666544 456778822   22212211 233456667777776444433       45889999998


Q ss_pred             CCcEEEEe-ecCCceEEEEEeCC-eEEEEEC------CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          165 QSRCIGEL-SFRSEVRSVKLRRD-RIIVVLE------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       165 ~~~~~~~~-~~~~~v~~v~~~~~-~l~v~~~------~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      +++..... .....+.++.++++ .+.++..      +.|.+||..+.+....+...........+..++++.+++. ..
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~  153 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-DF  153 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEE-EC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEE-ec
Confidence            88765443 33457889999865 4555543      3899999877665433332212223445566667777764 33


Q ss_pred             C------CceEEEEEcCCcceEeecccccceeEEEECCCCCEE-EEEeCCCCEEEEEECCC
Q 022387          237 Q------KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       237 ~------dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~t  290 (298)
                      .      .+.|..++.+.+....+..+...++.++|+|||++| ++.+.++. |++||+.+
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~  213 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALED  213 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECT
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecC
Confidence            2      355666666555555444455568999999999855 55566777 99999974

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.08  E-value=8.5e-09  Score=100.86  Aligned_cols=205  Identities=12%  Similarity=0.016  Sum_probs=125.5

Q ss_pred             CCCCeEEEEEcCCCCEEE-----EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC------
Q 022387           84 PPPTLLHISFNQDHGCFA-----AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------  151 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~la-----sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  151 (298)
                      |...+.+++|||||++||     .|++ ..|++||+++++.+....+ .......+.|++++..++.++.....      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            334689999999999999     3443 3488999998775301111 11112567889999988887732100      


Q ss_pred             CCCCCeEEEEeCCCCc----EEEEeecC-CceEEEEEeCC--eEEEEE-CC----eEEEEEcCCCeEEEEEeccCCCcce
Q 022387          152 QYPLNKVMIWDDHQSR----CIGELSFR-SEVRSVKLRRD--RIIVVL-EQ----KIFVYNFADLKLLHQIETIANPKGL  219 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~----~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~----~I~iwd~~~~~~i~~~~~~~~~~~~  219 (298)
                      ......|++|++.+++    .+.+...+ ..+..+.++++  .+++.. ++    .|++|+..+++ ...+..+......
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~  276 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEE
Confidence            0012349999999876    22222222 35778889875  344433 33    67777665444 3445544433322


Q ss_pred             EEEEeCCCCeEEEEecC---CCceEEEEEcCCcc---eEeeccc--ccceeEEEECCCCCEEEEEeCCCCEEEEEECC-C
Q 022387          220 CAVSQGVGSLVLVCPGL---QKGQVRVEHYASKR---TKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D  290 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs---~dg~v~i~~~~~~~---~~~~~~H--~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~-t  290 (298)
                      .. .+++  .+++. ..   .++.|.+|+.....   ...+..|  ...|..++|+ ++.++++...|+. .+||.+. +
T Consensus       277 ~~-~~~g--~l~~~-s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~  350 (695)
T 2bkl_A          277 VH-AWKD--RFYVL-TDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK  350 (695)
T ss_dssp             EE-EETT--EEEEE-ECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT
T ss_pred             EE-ecCC--cEEEE-ECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC
Confidence            22 2443  44432 33   36788889986543   2444433  4568999998 7889999999998 9998765 4


Q ss_pred             CcEEEe
Q 022387          291 GTLLQE  296 (298)
Q Consensus       291 g~~l~~  296 (298)
                      |+.+++
T Consensus       351 g~~~~~  356 (695)
T 2bkl_A          351 GKPVRT  356 (695)
T ss_dssp             CCEEEE
T ss_pred             CCeeEE
Confidence            665544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.05  E-value=1.4e-07  Score=81.94  Aligned_cols=196  Identities=12%  Similarity=0.104  Sum_probs=129.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      .+.++.++|+|++|+ ..++++..||. +++.+..........+..+....+++.++..++      .++.|..+|. ++
T Consensus        38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~------~~~~v~~vd~-~G  108 (276)
T 3no2_A           38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCG------HPSTILEVNM-KG  108 (276)
T ss_dssp             CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEES------TTEEEEEECT-TS
T ss_pred             CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecC------CCCEEEEEeC-CC
Confidence            577899999999988 44677889988 677766665411134555666778887776652      1356777775 67


Q ss_pred             cEEEEeecCC-------ceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          167 RCIGELSFRS-------EVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       167 ~~~~~~~~~~-------~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      +.+.++....       ....+.+.+  +.+++.. ++.|.+||.. ++.+.++.....+.. ..  ..+++.++++ +.
T Consensus       109 k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~-~~--~~~~g~~~v~-~~  183 (276)
T 3no2_A          109 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFS-SA--FLDNGDCLVA-CG  183 (276)
T ss_dssp             CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCE-EE--ECTTSCEEEE-CB
T ss_pred             CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccc-ee--EcCCCCEEEE-eC
Confidence            7776665321       222334443  3343333 4799999987 999999887544433 33  3455577764 67


Q ss_pred             CCceEEEEEcCCc-ceEeecccc------cceeEEEECCCCCEEEEEeCC--------CCEEEEEEC-CCCcEEEec
Q 022387          237 QKGQVRVEHYASK-RTKFIMAHD------SRIACFALTQDGQLLATSSTK--------GTLVRIFNT-LDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~-~~~~~~~H~------~~V~~l~fspdg~~lAt~S~D--------gt~IrIWd~-~tg~~l~~~  297 (298)
                      .++.|..++.++. .+.++..+.      ..+..++..++|.++++.+..        +. .+++.+ .+|+++.+|
T Consensus       184 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~-~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          184 DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH-PQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC-CSEEEECTTSBEEEEE
T ss_pred             CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC-ceEEEECCCCCEEEEe
Confidence            7778888998844 444665432      238899999999999998521        23 457776 678888776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.04  E-value=9.4e-09  Score=100.56  Aligned_cols=199  Identities=12%  Similarity=-0.033  Sum_probs=122.3

Q ss_pred             EEEEEcCCCCEEEEEcC-Ce-------------EEEEEcCCCce--EEEEeee-cCCceEEEEEecCCCEEEEEeCCCCC
Q 022387           89 LHISFNQDHGCFAAGTD-HG-------------FRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDP  151 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~-~g-------------i~vw~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ..++|+|||+.|+.++. .+             +++|++.+...  ....... +...+..+.+++++..+++.+.... 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-
Confidence            67899999999887765 33             88999987652  2222210 1234567778889988887763210 


Q ss_pred             CCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEEC-----CeEEEEEcCCCeE--EEEEeccCCCcceEEEEe
Q 022387          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-----QKIFVYNFADLKL--LHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~-----~~I~iwd~~~~~~--i~~~~~~~~~~~~~~~s~  224 (298)
                        ....|.+||..+++..........+....++...+++.++     ..|.+||+.+++.  ...+..+.....+..+++
T Consensus       250 --~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~  327 (695)
T 2bkl_A          250 --SENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI  327 (695)
T ss_dssp             --TEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE
T ss_pred             --CceEEEEEcCCCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE
Confidence              1136777776555543333333344444455444555553     5899999976542  234443321222233333


Q ss_pred             CCCCeEEEEecCCCceEEEEEcC--CcceEeeccc-ccceeEEEECCCCCEEE----EEeCCCCEEEEEECCCCcE
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAH-DSRIACFALTQDGQLLA----TSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~H-~~~V~~l~fspdg~~lA----t~S~Dgt~IrIWd~~tg~~  293 (298)
                      . ++.+++ +...||..++|.+.  .+....+..+ .+.|..++++|+++.|+    +...+++ |++||+.+|+.
T Consensus       328 ~-~~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~-v~~~d~~~g~~  400 (695)
T 2bkl_A          328 V-GGHLSL-EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ-IYKTSVSTGKS  400 (695)
T ss_dssp             E-TTEEEE-EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE-EEEEETTTCCE
T ss_pred             E-CCEEEE-EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE-EEEEECCCCcE
Confidence            3 335555 57889988886554  4445556555 67789999999998777    3334577 99999998864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.03  E-value=2.1e-07  Score=80.73  Aligned_cols=203  Identities=9%  Similarity=-0.015  Sum_probs=122.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee---cCCceEEEEEecCCCEEEEEe--CCC--------
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCNILALVG--GGP--------  149 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~--------  149 (298)
                      +...+.+++|++||+++++... +++.+|+..+++........   ....+..+.+..+++++++..  +..        
T Consensus        67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence            3457899999999998888765 77899998776543222110   011223466667776555422  100        


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe-EEEEE--CCeEEEEEcC-CCeE---EEEEeccCCCcceEEE
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL--EQKIFVYNFA-DLKL---LHQIETIANPKGLCAV  222 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~~--~~~I~iwd~~-~~~~---i~~~~~~~~~~~~~~~  222 (298)
                      ......+.|..+|.. ++.............++++++. ++++.  ++.|.+|++. +++.   ...+..+......  +
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~--i  223 (296)
T 3e5z_A          147 EMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG--L  223 (296)
T ss_dssp             CCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS--E
T ss_pred             cccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe--E
Confidence            000012355556655 4443333333456788898753 22443  3799999996 4544   3333111111223  4


Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFAL-TQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~f-spdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      ..++++.++++ .  ++.|.+|+.+.+.+..+..+.. +++++| +|+++.|..++.++  +--++..++++.+
T Consensus       224 ~~d~~G~l~v~-~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~--l~~~~~~~~~~~~  291 (296)
T 3e5z_A          224 RVDAGGLIWAS-A--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE--FWSIETNVRGLEH  291 (296)
T ss_dssp             EEBTTSCEEEE-E--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE--EEEEECSCCBCCC
T ss_pred             EECCCCCEEEE-c--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe--EEEEEcccccccc
Confidence            44556677764 3  7889999988666667777777 999999 69999888888664  4455777766543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.02  E-value=1.6e-07  Score=86.19  Aligned_cols=196  Identities=12%  Similarity=0.079  Sum_probs=127.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .....++|+++|+++++... ..|++|+.+..........  ..... +.+..+++.++++...     ....|.+||..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~-----~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWE-----GTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSS-----TTCEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecC-----CCceEEEEEcC
Confidence            36889999999997777765 5688999887665433331  22223 7777888877776632     11279999987


Q ss_pred             CCcEEEEe----e-cCCceEEEEEeC-C-eEEEEE-CCeEEEEEcCCCeEEEEEe-----ccCCCc--ceEEEEeCCCCe
Q 022387          165 QSRCIGEL----S-FRSEVRSVKLRR-D-RIIVVL-EQKIFVYNFADLKLLHQIE-----TIANPK--GLCAVSQGVGSL  229 (298)
Q Consensus       165 ~~~~~~~~----~-~~~~v~~v~~~~-~-~l~v~~-~~~I~iwd~~~~~~i~~~~-----~~~~~~--~~~~~s~~~d~~  229 (298)
                      .+.....+    . ....+.++++++ + .++++. ++.|+.||..+... ..+.     ......  .-++++++ ++.
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~-~g~  280 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFV-DSN  280 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETT-TTE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCC-CCE
Confidence            76544343    2 224567788887 3 444532 36899999976653 2331     111111  14555553 245


Q ss_pred             EEEEecCCCceEEEEEcCCcceEeecccc---------------cceeEEEECCCCCEEEEEe-CCCCEEEEEECCCCcE
Q 022387          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHD---------------SRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL  293 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~~~~~~~~H~---------------~~V~~l~fspdg~~lAt~S-~Dgt~IrIWd~~tg~~  293 (298)
                      +++ +...++.|+.++.... ...+.++.               .....|+|+|+|+++++-+ .+++ |++|++.+|++
T Consensus       281 lyv-~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v  357 (409)
T 3hrp_A          281 FYM-SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYV  357 (409)
T ss_dssp             EEE-EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEE
T ss_pred             EEE-EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEE
Confidence            555 4677888988887655 33343332               3589999999999888888 7888 99999888865


Q ss_pred             E
Q 022387          294 L  294 (298)
Q Consensus       294 l  294 (298)
                      .
T Consensus       358 ~  358 (409)
T 3hrp_A          358 S  358 (409)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.02  E-value=4.8e-07  Score=86.53  Aligned_cols=192  Identities=14%  Similarity=0.062  Sum_probs=127.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-eEEEEEcC--CCceEEEEeeecCCceEEEEEe----cCCCEEEEEeCCCCCCCCCCeE
Q 022387           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCD--PFREIFRRDFERGGGIGVVEML----FRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~-gi~vw~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..+.++.|+|||+++++++++ .+.+||+.  +.+.+.....  ......+.++    +++..++++..      .+++|
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~------~~~~v  268 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAY------WPPQY  268 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEE------ETTEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEc------cCCeE
Confidence            367799999999999988875 57899995  6666554443  4456677777    57877777662      46899


Q ss_pred             EEEeCCCCcEEEEeecC------------CceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEE--EEEeccCCCcceE
Q 022387          159 MIWDDHQSRCIGELSFR------------SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLL--HQIETIANPKGLC  220 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~------------~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i--~~~~~~~~~~~~~  220 (298)
                      .|+|..+.+.+..+...            ..+..+..+++  .+++..  .++|.++|..+.+.+  .++....   ..-
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~---~~~  345 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER---FLH  345 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS---SEE
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc---ccc
Confidence            99999999888776532            14566666543  333333  389999998765432  2332221   222


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eec-----ccccceeEEEECCC-CCEEEEEe-CCCCEEEEEECCC
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-----AHDSRIACFALTQD-GQLLATSS-TKGTLVRIFNTLD  290 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~-----~H~~~V~~l~fspd-g~~lAt~S-~Dgt~IrIWd~~t  290 (298)
                      .+.+++++.++.++...++.|.++|.++.++. .+.     .|.+.-..+ ++|+ |..++|+. .+++ |.|+|..+
T Consensus       346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~-Vsvid~~~  421 (567)
T 1qks_A          346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDS-VALIGTDP  421 (567)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCT
T ss_pred             CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCe-EEEecCCC
Confidence            44556666777665667789999999877643 222     243222122 5887 56667764 3577 99999988

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.01  E-value=2.3e-07  Score=80.65  Aligned_cols=202  Identities=13%  Similarity=0.099  Sum_probs=120.5

Q ss_pred             CCeEEEEEcCC-CCEEEEEcCCeEEEEEcCCCceEEE-Eeee---cCCceEEEEEecCCCEEEEEeCCC--------CCC
Q 022387           86 PTLLHISFNQD-HGCFAAGTDHGFRIYNCDPFREIFR-RDFE---RGGGIGVVEMLFRCNILALVGGGP--------DPQ  152 (298)
Q Consensus        86 ~~V~~v~fs~d-g~~lasgs~~gi~vw~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  152 (298)
                      ..+.+++++++ |+++++...+++.+|+.+ .+.... ....   ....+..+.+..+++..+...+..        ...
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence            46899999999 887777666788899987 443221 1100   012245566666666554433110        000


Q ss_pred             CCCCeEEEEeCCCCcEEEEeecCCceEEEEEe----CCe--EEEEE--CCeEEEEEcC-CCeEE--EEEeccC-CC-cce
Q 022387          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR----RDR--IIVVL--EQKIFVYNFA-DLKLL--HQIETIA-NP-KGL  219 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~----~~~--l~v~~--~~~I~iwd~~-~~~~i--~~~~~~~-~~-~~~  219 (298)
                      ...+.|..||.. ++.............+.++    ++.  +.++.  ++.|.+||+. +++..  ..+.... .. ...
T Consensus       150 ~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             SSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             CCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCC
Confidence            001457777765 5543333333345677888    764  45554  3799999985 44321  1121111 11 223


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCCC-EEEEEeCCCCEEEEEECCCC
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ..+..++++.++++ ...++.|.+|+.++ +....+..+...+.+++|+|+|+ ++++...++. |.+|++...
T Consensus       229 ~~i~~d~~G~l~v~-~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-l~~~~~~~~  300 (314)
T 1pjx_A          229 DGMDFDEDNNLLVA-NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQRN  300 (314)
T ss_dssp             EEEEEBTTCCEEEE-EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECSSC
T ss_pred             CceEECCCCCEEEE-EcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe-EEEEeCCCC
Confidence            34555666677763 45678888898874 33445666667899999999999 5666666777 999998753

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.01  E-value=2.7e-07  Score=80.23  Aligned_cols=199  Identities=8%  Similarity=0.018  Sum_probs=119.7

Q ss_pred             CeEEEEEcCCCCEEEE-------Ec-CCeEEEEEcCCCceEEEEee---ecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAA-------GT-DHGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~~las-------gs-~~gi~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      ...+++|+++|.++++       +. ++++.+|+..+.+......-   .+...+..+.+..+...+.++.       ..
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-------~~   91 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-------MR   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-------TT
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-------CC
Confidence            5678999999998877       34 46688998776654322110   0123455555655523344444       22


Q ss_pred             CeEEEEeCCCCcEEEE-eec-----CCceEEEEEeCC-eEEEEEC-----------------CeEEEEEcCCCeEEEEEe
Q 022387          156 NKVMIWDDHQSRCIGE-LSF-----RSEVRSVKLRRD-RIIVVLE-----------------QKIFVYNFADLKLLHQIE  211 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~-~~~-----~~~v~~v~~~~~-~l~v~~~-----------------~~I~iwd~~~~~~i~~~~  211 (298)
                      +.|.+||.. ++.... ...     ...+..+.++++ .+.++..                 +.|..||.. ++......
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            469999998 665432 221     124678888765 4555543                 346666654 44332222


Q ss_pred             ccCCCcceEEEE--eCCCCeEEEEecCCCceEEEEEcC-Ccc------eEeecccc-cceeEEEECCCCCEEEEEeCCCC
Q 022387          212 TIANPKGLCAVS--QGVGSLVLVCPGLQKGQVRVEHYA-SKR------TKFIMAHD-SRIACFALTQDGQLLATSSTKGT  281 (298)
Q Consensus       212 ~~~~~~~~~~~s--~~~d~~~la~sGs~dg~v~i~~~~-~~~------~~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt  281 (298)
                       +......++++  .++++..+.++...++.|.+|+.. ...      ...+..+. ..+..|+++++|+++++...++.
T Consensus       170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence             22222344554  115555444446678889998865 222      12334444 66899999999999999888888


Q ss_pred             EEEEEECCCCcEEEe
Q 022387          282 LVRIFNTLDGTLLQE  296 (298)
Q Consensus       282 ~IrIWd~~tg~~l~~  296 (298)
                       |.+||..+|+.+..
T Consensus       249 -i~~~d~~~g~~~~~  262 (314)
T 1pjx_A          249 -IEVFGPDGGQPKMR  262 (314)
T ss_dssp             -EEEECTTCBSCSEE
T ss_pred             -EEEEcCCCCcEeEE
Confidence             99999987776543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.01  E-value=5.4e-08  Score=86.08  Aligned_cols=189  Identities=14%  Similarity=0.101  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCEEEEEcC----------------------------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCC
Q 022387           88 LLHISFNQDHGCFAAGTD----------------------------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC  139 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~----------------------------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (298)
                      +..++|+|||+.|+.++.                            ..+.+|++.+.+.......  . .+..+.+++++
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe
Confidence            899999999999887762                            2366788877654223332  2 45566777777


Q ss_pred             CEEEEEeCCCCCCCCCC-eEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEEC---------CeEEEEEcCCCeEEEE
Q 022387          140 NILALVGGGPDPQYPLN-KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQ  209 (298)
Q Consensus       140 ~~~~~~~~~~~~~~~d~-~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~---------~~I~iwd~~~~~~i~~  209 (298)
                       .++++....... ... ...||.+.+++....... ..+..+.-+.+.++....         ..|.+||  +++....
T Consensus       183 -~~~~~~~~~~~~-~~~~~~~l~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          183 -IVVNVPHREIIP-QYFKFWDIYIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             -EEEEEECCCSSC-CSSCCEEEEEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             -EEEEEecccccc-cccccccEEEeCCCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence             444443221000 001 334444335443322222 344444333445665542         3677787  4443222


Q ss_pred             EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ...+...+.. .+.++ |+ +++ +++.+|.+++| +..+....+..+...|.+++|+|  .++++++.+++..+||.+.
T Consensus       258 ~~~~~~~~~~-~~~~s-dg-~~~-~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          258 LDEVDRGVGQ-AKIKD-GK-VYF-TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             STTCCSEEEE-EEEET-TE-EEE-EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             cccCCcccCC-ccEEc-Cc-EEE-EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            2222222222 14445 55 555 47889999999 76555555556678899999999  6788888787723888887


Q ss_pred             CCc
Q 022387          290 DGT  292 (298)
Q Consensus       290 tg~  292 (298)
                       |+
T Consensus       331 -g~  332 (347)
T 2gop_A          331 -GE  332 (347)
T ss_dssp             -SS
T ss_pred             -Cc
Confidence             65

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.99  E-value=3.1e-07  Score=80.08  Aligned_cols=194  Identities=8%  Similarity=0.003  Sum_probs=121.3

Q ss_pred             eEEEEEcCCC-CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           88 LLHISFNQDH-GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        88 V~~v~fs~dg-~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      --+..|++++ .++.+... +.|..|+.++.... ....  ...+..+.+..+++++ ++.        ++.|.+||..+
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~--~~~~~~i~~~~dG~l~-v~~--------~~~l~~~d~~~   82 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM--DAPVSSVALRQSGGYV-ATI--------GTKFCALNWKE   82 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC--SSCEEEEEEBTTSSEE-EEE--------TTEEEEEETTT
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC--CCceEEEEECCCCCEE-EEE--------CCeEEEEECCC
Confidence            4578899965 45556655 56889998876542 2332  5667788888888743 333        25799999988


Q ss_pred             CcEEEEeec-----CCceEEEEEeCCe-EEEEE-----------CCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCC
Q 022387          166 SRCIGELSF-----RSEVRSVKLRRDR-IIVVL-----------EQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVG  227 (298)
Q Consensus       166 ~~~~~~~~~-----~~~v~~v~~~~~~-l~v~~-----------~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d  227 (298)
                      ++.......     ...+..+.++++. +.++.           .....+|.+. +++.. .+.........++++  +|
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~s--pd  159 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWS--LD  159 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEEC--TT
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEc--CC
Confidence            765433222     1246778887653 44443           1234566553 23332 222222222334444  45


Q ss_pred             CeEEEEecCCCceEEEEEcC--Ccce------EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          228 SLVLVCPGLQKGQVRVEHYA--SKRT------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i~~~~--~~~~------~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +..+.++.+.++.|.++++.  ...+      ..+..+...+..|+++++|++.++...++. |.+||..+|+++.++
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTV  236 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEE
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEE
Confidence            55444446778889988763  3222      133345567899999999999999888888 999999999987664

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.99  E-value=1.1e-07  Score=93.20  Aligned_cols=201  Identities=10%  Similarity=0.019  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCEEEEEcC-Ce----------------EEEEEcCCCce--EEEEeee-cCCceEEEEEecCCCEEEEEeC
Q 022387           88 LLHISFNQDHGCFAAGTD-HG----------------FRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLFRCNILALVGG  147 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~-~g----------------i~vw~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  147 (298)
                      +..++|+|||+.|+.++. ..                +.+|++.+...  ....+.. +......+.+++++..+++.+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            567999999999887765 33                77899987652  1222210 1223556788899998887763


Q ss_pred             CCCCCCCCCeEEEEeCCC------Cc-EEEEeecC-CceEE-EEEeCCeEEEEEC-----CeEEEEEcCCCe--EEEEEe
Q 022387          148 GPDPQYPLNKVMIWDDHQ------SR-CIGELSFR-SEVRS-VKLRRDRIIVVLE-----QKIFVYNFADLK--LLHQIE  211 (298)
Q Consensus       148 ~~~~~~~d~~v~iWD~~~------~~-~~~~~~~~-~~v~~-v~~~~~~l~v~~~-----~~I~iwd~~~~~--~i~~~~  211 (298)
                      ... . .+..|.+||+.+      +. ....+..+ ..+.. +.-..+.+++.++     ..|.+||+.+.+  ..+.+.
T Consensus       253 ~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          253 EGC-D-PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             CSS-S-SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ccC-C-CccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            210 0 157899999976      42 23344332 22322 3334566666653     379999997654  234454


Q ss_pred             ccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcCC-cceEeecccccceeEEEECCCCCEEE-EEe---CCCCEEE
Q 022387          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYAS-KRTKFIMAHDSRIACFALTQDGQLLA-TSS---TKGTLVR  284 (298)
Q Consensus       212 ~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lA-t~S---~Dgt~Ir  284 (298)
                      .+.....+..+.+.+++.+++ +...+|..+|  ++... +....+..|.+.|..++++|+++.|+ +.+   ..++ |.
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~-~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~-i~  408 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVL-CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI-IY  408 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEE-EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE-EE
T ss_pred             CCCCCCeEEEEEEEcCCEEEE-EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCE-EE
Confidence            443322222333333445555 4777886555  66633 34567777888899999999997655 322   3567 99


Q ss_pred             EEECCCCc
Q 022387          285 IFNTLDGT  292 (298)
Q Consensus       285 IWd~~tg~  292 (298)
                      +||+.+|+
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99999877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.96  E-value=1.1e-07  Score=80.94  Aligned_cols=192  Identities=10%  Similarity=-0.026  Sum_probs=117.4

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ...+++++++|++++ +... +++.+|+......... ...+......+.+..+++ +.++.       .++.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~-l~v~~-------~~~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGT-VYVTD-------FNNRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCC-EEEEE-------TTTEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCC-EEEEc-------CCCEEEEEeCC
Confidence            678999999999777 4344 6688888655432211 110113345566666666 44444       24789999987


Q ss_pred             CCcEEEEeec--CCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          165 QSRCIGELSF--RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       165 ~~~~~~~~~~--~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      ..... .+..  ...+..+.++++ .+.++.  ++.|.+|+..+................+++.  +++.++++ ...++
T Consensus        96 ~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~--~~g~l~v~-~~~~~  171 (270)
T 1rwi_B           96 SNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD--NSGNVYVT-DTDNN  171 (270)
T ss_dssp             CSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC--TTCCEEEE-EGGGT
T ss_pred             CceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe--CCCCEEEE-ECCCC
Confidence            65432 2222  246788888865 455554  3689999765543322111111222344444  45566653 55678


Q ss_pred             eEEEEEcCCcceEee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          240 QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       240 ~v~i~~~~~~~~~~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .|.+++......... ..+...+..|+++++|.++++...++. |++||.....
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~  224 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTT  224 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSC
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCc
Confidence            899999877654432 334467899999999999999888888 9999987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.96  E-value=1.1e-07  Score=93.66  Aligned_cols=203  Identities=8%  Similarity=-0.006  Sum_probs=124.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC------eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC-------C
Q 022387           86 PTLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-------Q  152 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~------gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  152 (298)
                      ..+..++|||||++||.++++      .|++||+++++.+.. .. +......+.|+++ ..++++......       .
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            368899999999999977642      378999998876432 21 1111245678888 888877632210       0


Q ss_pred             CCCCeEEEEeCCCCcE--EEEeecC---CceEEEEEeCCe--EEEEE-C-----CeEEEEEcCCC--eEEEEEeccCCCc
Q 022387          153 YPLNKVMIWDDHQSRC--IGELSFR---SEVRSVKLRRDR--IIVVL-E-----QKIFVYNFADL--KLLHQIETIANPK  217 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~--~~~~~~~---~~v~~v~~~~~~--l~v~~-~-----~~I~iwd~~~~--~~i~~~~~~~~~~  217 (298)
                      .....|++|++.+++.  ...+...   ..+..+.++++.  +++.. +     ..|++||+.++  +....+..+....
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence            0134699999987652  2222222   137788898864  44443 2     38999999766  3145555544333


Q ss_pred             ceEEEEeCCCCeEEEEecC---CCceEEEEEcCCc--ceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC-C
Q 022387          218 GLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASK--RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D  290 (298)
Q Consensus       218 ~~~~~s~~~d~~~la~sGs---~dg~v~i~~~~~~--~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~-t  290 (298)
                      .. .+++++  ..|++...   .++.|.+|+....  ... .+..+...+..++|+ ++.++++...|+. .+||.+. +
T Consensus       320 ~~-~~~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~  394 (741)
T 1yr2_A          320 WD-FVDGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD  394 (741)
T ss_dssp             EE-EEEEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT
T ss_pred             EE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC
Confidence            22 234544  44433222   2556888988763  333 344555667888888 6788999999998 8888765 4


Q ss_pred             CcEEEe
Q 022387          291 GTLLQE  296 (298)
Q Consensus       291 g~~l~~  296 (298)
                      |+.+++
T Consensus       395 g~~~~~  400 (741)
T 1yr2_A          395 GKPAGA  400 (741)
T ss_dssp             SCEEEE
T ss_pred             CCceee
Confidence            655544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.93  E-value=3.3e-07  Score=83.32  Aligned_cols=112  Identities=9%  Similarity=-0.016  Sum_probs=73.6

Q ss_pred             EEEEcCCCCEEEEEc-----------CCeEEEEEcCCCceEEEEeeec------CCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        90 ~v~fs~dg~~lasgs-----------~~gi~vw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .++++|||++|+++.           .+.+.+||..+.+.........      ......+.+++++..+.++...    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----  157 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----  157 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----
Confidence            399999999877664           2458899999988766655410      0123457778889888877632    


Q ss_pred             CCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeE-EEEECCeEEEEEcCC-CeE
Q 022387          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVVLEQKIFVYNFAD-LKL  206 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l-~v~~~~~I~iwd~~~-~~~  206 (298)
                       .++.|.++|..+++.+.++...............+ .++.++++.+.++.+ ++.
T Consensus       158 -~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          158 -PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             -CCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence             24889999999999999887654211111222333 334467777777754 443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.92  E-value=7.5e-07  Score=80.16  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ce-EeecccccceeEEEECCCC
Q 022387          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT-KFIMAHDSRIACFALTQDG  270 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~-~~~~~H~~~V~~l~fspdg  270 (298)
                      +.|.+||+.+.+.+.++..+.  ...++|++++  .+|++++ . +.|.+||..+.  ++ .++..+....+.++|+|||
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg--~~l~v~n-~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR--NLMLTLD-G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT--CCEEEEETTT--TEEEEEC-S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             ceEEEEECCCCcEEEEEecCC--eeEEEECCCC--CEEEEeC-C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            489999999999999999876  5666777665  5666434 4 99999998876  44 3556777889999999998


Q ss_pred             C
Q 022387          271 Q  271 (298)
Q Consensus       271 ~  271 (298)
                      +
T Consensus       360 ~  360 (361)
T 2oiz_A          360 G  360 (361)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.92  E-value=2.5e-06  Score=73.23  Aligned_cols=191  Identities=12%  Similarity=0.010  Sum_probs=123.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+.++++.++|+++++... +++.+|+.+ .+. ...... ....+..+.+..++...+...       .++.|..||.
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~~   85 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWFTEN-------AANKIGRITK   85 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEEeCC-------CCCeEEEECC
Confidence            47999999999998777664 678899877 433 222210 134455666666666544433       3477999998


Q ss_pred             CCCcEEEEeec---CCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          164 HQSRCIGELSF---RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       164 ~~~~~~~~~~~---~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      . ++ +..+..   ...+..+.+.++ .+.++.  ++.|.+||. +++.. .+...........+..++++.++++ ...
T Consensus        86 ~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-~~~  160 (299)
T 2z2n_A           86 K-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFT-ENQ  160 (299)
T ss_dssp             T-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEE-ETT
T ss_pred             C-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEE-eCC
Confidence            6 33 233332   236788888864 555555  368999998 44433 3322212223445556666666663 556


Q ss_pred             CceEEEEEcCCcceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       238 dg~v~i~~~~~~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ++.|..++. ......  +..+...+..|+++++|+++++...++. |.+||. +++.
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~  215 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEI  215 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCE
T ss_pred             CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcE
Confidence            778888887 444433  3344567899999999999888877888 999998 7764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.87  E-value=2.3e-07  Score=90.72  Aligned_cols=200  Identities=9%  Similarity=0.078  Sum_probs=122.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-----cC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC-----
Q 022387           83 SPPPTLLHISFNQDHGCFAAG-----TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-----  151 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasg-----s~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  151 (298)
                      .+...+..++|||||++||-+     ++ ..|+|||+++++.+.. .+ +......+.|+ ++..++.+...+..     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            344578899999999999943     33 2378999999875332 22 01112456788 88888887743210     


Q ss_pred             -CCCCCeEEEEeCCCCcE----EEEeec--CCceEEEEEeCCe--EEEEE-C----CeEEEEEcCCCe-EEEEEeccCCC
Q 022387          152 -QYPLNKVMIWDDHQSRC----IGELSF--RSEVRSVKLRRDR--IIVVL-E----QKIFVYNFADLK-LLHQIETIANP  216 (298)
Q Consensus       152 -~~~d~~v~iWD~~~~~~----~~~~~~--~~~v~~v~~~~~~--l~v~~-~----~~I~iwd~~~~~-~i~~~~~~~~~  216 (298)
                       ......|++|++.+.+.    +.+...  ...+..+.++++.  +++.. .    +.|+++|+.+.+ .+..+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence             01235699999987652    222222  2236678888753  43332 1    489999996653 34555554443


Q ss_pred             cceEEEEeCCCCeEEEEecCC---CceEEEEEcCCcce---EeecccccceeEEEECCCCCEEEEEeCCC---CEEEEEE
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFN  287 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~---dg~v~i~~~~~~~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dg---t~IrIWd  287 (298)
                      .... ++++++ .+++. ...   ++.|..+++.....   ..+..|...+.  .|++++++|+....++   . |++||
T Consensus       283 ~~~~-~~~~g~-~l~~~-t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~~d  356 (693)
T 3iuj_A          283 DVSL-VDNKGS-TLYLL-TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQFD  356 (693)
T ss_dssp             CEEE-EEEETT-EEEEE-ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEEEC
T ss_pred             eEEE-EeccCC-EEEEE-ECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEEEE
Confidence            3222 555543 33333 333   46788888876443   46666766665  8999998887776554   5 88999


Q ss_pred             CCCC
Q 022387          288 TLDG  291 (298)
Q Consensus       288 ~~tg  291 (298)
                      +..+
T Consensus       357 ~~g~  360 (693)
T 3iuj_A          357 YEGK  360 (693)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.87  E-value=2.7e-06  Score=73.37  Aligned_cols=192  Identities=9%  Similarity=-0.040  Sum_probs=130.3

Q ss_pred             CeEEEEEcCCCCEEEEEc---CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs---~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ....+.|++||.++++.+   .+.++++|..+++.+....+  ........+...++.+..+..      .++.+.++|.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~   93 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDR   93 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEET------TCSEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEEeCCEEEEEEe------cCCEEEEEEC
Confidence            468999999986555544   25688999999988766654  222121222333556666663      4689999999


Q ss_pred             CCCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCC--Cc---ceEEEEeCCCCeEEEEecC
Q 022387          164 HQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN--PK---GLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       164 ~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~--~~---~~~~~s~~~d~~~la~sGs  236 (298)
                      .+.+.+.++... ..-..++...+.++++. +++|.++|..+.+.+.++.....  ++   ..+.+.   ++.+++. ..
T Consensus        94 ~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~---dg~lyvn-~~  169 (266)
T 2iwa_A           94 RTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI---NGEVWAN-IW  169 (266)
T ss_dssp             TTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---TTEEEEE-ET
T ss_pred             CCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE---CCEEEEe-cC
Confidence            999999998876 55566777777777764 47999999999999999886432  21   122333   3466653 45


Q ss_pred             CCceEEEEEcCCcceE-eeccc-------------ccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCC
Q 022387          237 QKGQVRVEHYASKRTK-FIMAH-------------DSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~H-------------~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      .++.|.+-|..+.++. .+.-.             ....+.|+|+|++ ++|+|+...++ +.+.++...
T Consensus       170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~  238 (266)
T 2iwa_A          170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV  238 (266)
T ss_dssp             TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence            5678888887766543 33211             1356999999997 57777767777 888877643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.83  E-value=4.4e-07  Score=83.66  Aligned_cols=201  Identities=17%  Similarity=0.106  Sum_probs=119.6

Q ss_pred             EEEEcCCCCEEEEEc-----------CCeEEEEEcCCCceEEEEeee------cCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        90 ~v~fs~dg~~lasgs-----------~~gi~vw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .++++|||++|+++.           .+.+.++|..+.+......+.      .......+.+++++..++++...    
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----
Confidence            799999999877764           245779999998876655541      01123345678888888877632    


Q ss_pred             CCCCeEEEEeCCCCcEEEEeecCCceEE--------EEEeCC--------------------------------------
Q 022387          153 YPLNKVMIWDDHQSRCIGELSFRSEVRS--------VKLRRD--------------------------------------  186 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v~~--------v~~~~~--------------------------------------  186 (298)
                       .++.|.+.|..+++.+.++.....+.-        +.+.++                                      
T Consensus       198 -~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          198 -PAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             -CCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence             247899999999988887765321100        111111                                      


Q ss_pred             -eEEEEE-CCeEEEEEcCCCeE--EEEEecc----------CCCcceEEEEeCCCCeEEEEecC-------CCceEEEEE
Q 022387          187 -RIIVVL-EQKIFVYNFADLKL--LHQIETI----------ANPKGLCAVSQGVGSLVLVCPGL-------QKGQVRVEH  245 (298)
Q Consensus       187 -~l~v~~-~~~I~iwd~~~~~~--i~~~~~~----------~~~~~~~~~s~~~d~~~la~sGs-------~dg~v~i~~  245 (298)
                       .+++.. .+.|.+.|+...+.  +.++...          ......++++++++..+++....       ..+.|.+.|
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence             111111 23444445432221  1111100          00111256666654334432110       135788888


Q ss_pred             cCCcceE-eecccccceeEEEECCCCC-EEEEEe-CCCCEEEEEECCCCcEEEec
Q 022387          246 YASKRTK-FIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       246 ~~~~~~~-~~~~H~~~V~~l~fspdg~-~lAt~S-~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..+.++. ++.. ......|+|+|||+ +|.++. .+++ |.|+|+.+++.++++
T Consensus       357 ~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~-VsVID~~t~kvv~tI  409 (426)
T 3c75_H          357 AETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQT-LHIYDAATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCe-EEEEECCCCCEEEEe
Confidence            8776543 4432 22599999999998 888887 4888 999999999998774

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.83  E-value=7.8e-06  Score=70.04  Aligned_cols=191  Identities=9%  Similarity=-0.014  Sum_probs=120.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+.++++.++|.++++... +++..|+.+ .+ ....... .......+.+..++.+.+...       .++.|.+||.
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~d~  127 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEM-------NGNRIGRITD  127 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEec-------CCceEEEECC
Confidence            47899999999998887764 568888865 22 2222211 123455555655555444433       2478999998


Q ss_pred             CCCcEEEE-ee-cCCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          164 HQSRCIGE-LS-FRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       164 ~~~~~~~~-~~-~~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                       +++.... .. ....+..+.+.++ .+.++.  .+.|..||. +++.. .+...........+..++++.++++ ...+
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~  203 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EFKIPTPASGPVGITKGNDDALWFV-EIIG  203 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETTT
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-EeeCCCCCCcceeEEECCCCCEEEE-ccCC
Confidence             5543322 11 1235778888865 455554  368999998 55543 2322212223345555666666663 4557


Q ss_pred             ceEEEEEcCCcceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          239 GQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       239 g~v~i~~~~~~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      +.|.+++. ......  +..+...+.+|+++++|+++++...++. |.+||. +++
T Consensus       204 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~  256 (299)
T 2z2n_A          204 NKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI  256 (299)
T ss_dssp             TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE
T ss_pred             ceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc
Confidence            78888888 444332  3445677999999999998888877888 999998 454

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.82  E-value=3.2e-06  Score=74.82  Aligned_cols=192  Identities=7%  Similarity=-0.002  Sum_probs=118.0

Q ss_pred             CeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      -..+.+|++++. ++.++.. +++.+|+.++.+.. ....  ...+..+.+..+++.++...         ..|.+||..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~--~~~v~~i~~~~dg~l~v~~~---------~gl~~~d~~  117 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDSKQLIASD---------DGLFLRDTA  117 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTEEEEEET---------TEEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC--CCcceEEEEeCCCeEEEEEC---------CCEEEEECC
Confidence            356789999854 5566655 66888988776432 2232  45677777777776554432         349999998


Q ss_pred             CCcEEEEeecC-----CceEEEEEeCCe-EEEEEC--------CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          165 QSRCIGELSFR-----SEVRSVKLRRDR-IIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       165 ~~~~~~~~~~~-----~~v~~v~~~~~~-l~v~~~--------~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      +++........     ..+..+.++++. +.++..        +.|..++  +++. ..+........  .+.+++|+..
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~--~i~~s~dg~~  192 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPN--SICFSPDGTT  192 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEE--EEEECTTSCE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccC--CeEEcCCCCE
Confidence            87754332221     246778888753 444432        3455555  4443 33322212222  3444555555


Q ss_pred             EEEecCCCceEEEEEcC--Cc-ce------EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          231 LVCPGLQKGQVRVEHYA--SK-RT------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~--~~-~~------~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.++.+.++.|.+++..  .. .+      ..+..+...+..++++++|.++++...++. |.+||. +|+.+.++
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i  266 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARY  266 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEE
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEE
Confidence            54446777899998874  33 21      123334556889999999999888877788 999998 67776553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=6.9e-09  Score=94.00  Aligned_cols=182  Identities=10%  Similarity=-0.010  Sum_probs=93.4

Q ss_pred             CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387           96 DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (298)
Q Consensus        96 dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (298)
                      ++..|++|+.++ +..||..+++.++....   +.+....+..++..++..+       .|+.|+.||..+++.+..+.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s-------~dg~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDP-------NDGSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECT-------TTCCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeC-------CCCEEEEEECCCCceeeeeec
Confidence            567788887754 78999999988777663   2222222222333333322       578999999999887666554


Q ss_pred             CC--ceE-EEEE-eCCeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc
Q 022387          175 RS--EVR-SVKL-RRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (298)
Q Consensus       175 ~~--~v~-~v~~-~~~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~  249 (298)
                      ..  .+. +..+ ..+.++++ .++.|+.||..+++.+.++..+..    ..+++  ++..+++ |+.+|.|..||..+.
T Consensus        78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~-~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYL-GRTEYTITMYDTKTR  150 (369)
T ss_dssp             CHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEE-EEEEEEEECCCSSSS
T ss_pred             cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEE-EecCCEEEEEECCCC
Confidence            31  110 0011 23334433 357899999999999888775431    23333  3345543 788999999998765


Q ss_pred             ce-EeecccccceeEEEECCCC---CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          250 RT-KFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       250 ~~-~~~~~H~~~V~~l~fspdg---~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .. ..+..+.  ....+++.++   ..+..++.||. |+.||.++|+++.++
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQ  199 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEE
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEe
Confidence            53 3433221  2334444442   45667788998 999999999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.71  E-value=4.2e-05  Score=65.38  Aligned_cols=192  Identities=8%  Similarity=-0.001  Sum_probs=120.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+.++++.++|+++++... +++.+|+.+ .+. ...... .......+.+..+++..+...       .++.|..+|.
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~~  132 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQL-------NGDRIGKLTA  132 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEET-------TTTEEEEECT
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEcc-------CCCeEEEECC
Confidence            46889999999998777664 567788876 333 222221 123455566665565444332       2477999998


Q ss_pred             CCCcEEEEeec---CCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          164 HQSRCIGELSF---RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       164 ~~~~~~~~~~~---~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      . ++.. .+..   ...+..+.+.++ .+.++.  .+.|..||. +++.. .+...........+..++++.++++ ...
T Consensus       133 ~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~  207 (300)
T 2qc5_A          133 D-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFV-EIM  207 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             C-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEE-ccC
Confidence            7 5443 2222   245778888764 466665  468999998 45443 3332222223445555666666663 455


Q ss_pred             CceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       238 dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .+.|.+++....... .+..+...+.+|+++++|+++++...++. |.+||. +++.
T Consensus       208 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~  262 (300)
T 2qc5_A          208 GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTI  262 (300)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCE
T ss_pred             CCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcE
Confidence            677888887433222 23345567999999999998888877788 999997 4543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.70  E-value=5.2e-05  Score=64.80  Aligned_cols=191  Identities=9%  Similarity=0.008  Sum_probs=120.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+.++++.++|+++++... +++.+|+.+ .+.. ..... ....+..+.+..+++..+...       .++.|..+|.
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~v~~~d~   90 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLGDIWFTEN-------GANKIGKLSK   90 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCCCEEEEec-------CCCeEEEECC
Confidence            47889999999998777754 678899877 3332 22221 123455566665565444332       3477999998


Q ss_pred             CCCcEEEEeec---CCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          164 HQSRCIGELSF---RSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       164 ~~~~~~~~~~~---~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      . ++. ..+..   ...+..+.+.++ .+.++.  ++.|..||.. ++.. .+...........+..++++.++++ ...
T Consensus        91 ~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~  165 (300)
T 2qc5_A           91 K-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-ENQ  165 (300)
T ss_dssp             T-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             C-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ecC
Confidence            7 554 23332   245778888754 455555  4689999886 4443 3322211223445555666666653 555


Q ss_pred             CceEEEEEcCCcceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       238 dg~v~i~~~~~~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ++.|..++.+. ....  +..+...+..|+++++|.++++....+. |.+||. +++.
T Consensus       166 ~~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~  220 (300)
T 2qc5_A          166 NNSIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEI  220 (300)
T ss_dssp             TTEEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCE
T ss_pred             CCeEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcE
Confidence            77888888743 3332  2344567999999999998888877777 999998 5554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.68  E-value=4e-06  Score=74.63  Aligned_cols=204  Identities=7%  Similarity=0.041  Sum_probs=119.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--Ce-EEEEEcCCCceEEEEe-----e-ecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD--HG-FRIYNCDPFREIFRRD-----F-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~--~g-i~vw~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ..+..|++++||+++++...  ++ ++||.++.. .+....     . .+...+..+.+..++++.++-.+..  ...++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~--~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ--SKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH--HTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC--cCCCC
Confidence            57899999999999888642  23 567776633 222110     0 0123455556655555433322100  00136


Q ss_pred             eEEEEeCCCCcEEEEeecCC-------ceEEEEEeC--CeEEEEE-----CCeEEEEEcCCCeEEEEEeccCC--C----
Q 022387          157 KVMIWDDHQSRCIGELSFRS-------EVRSVKLRR--DRIIVVL-----EQKIFVYNFADLKLLHQIETIAN--P----  216 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~~~~-------~v~~v~~~~--~~l~v~~-----~~~I~iwd~~~~~~i~~~~~~~~--~----  216 (298)
                      +|.+||..+++.+..+.+..       .+..+.+++  ..+.++.     ++.|.+||+.+++..+.+..|..  +    
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            89999999998777776532       346788874  3455552     36999999988776665533210  0    


Q ss_pred             ---------------------cceEEEEeCCCCeEEEEecCCCceEEEEEcC---Ccc-----e---EeecccccceeEE
Q 022387          217 ---------------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA---SKR-----T---KFIMAHDSRIACF  264 (298)
Q Consensus       217 ---------------------~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~---~~~-----~---~~~~~H~~~V~~l  264 (298)
                                           .....+..++|+..|.++......+...+..   ...     +   ....++......|
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                                 1122344444555444322333344333321   100     0   0122455567889


Q ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          265 ALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       265 ~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      +++++|.++++...++. |.+||.++|+.
T Consensus       254 a~d~~G~l~va~~~~~~-V~~~d~~~G~~  281 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSA-IGVITSADRAY  281 (343)
T ss_dssp             EECTTCCEEEEEGGGTE-EEEEETTTTEE
T ss_pred             EECCCCCEEEEccCCCe-EEEEECCCCCE
Confidence            99999999999998998 99999866754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.65  E-value=1.5e-05  Score=68.17  Aligned_cols=181  Identities=7%  Similarity=0.003  Sum_probs=120.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ...-...+.|+ ++.++.+.+..   .++++|.++++.+....+  ........+...++.+..+..      .++.+.+
T Consensus        41 ~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw------~~~~v~v  111 (262)
T 3nol_A           41 TKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTW------KNGLGFV  111 (262)
T ss_dssp             TTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEES------SSSEEEE
T ss_pred             CCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEe------eCCEEEE
Confidence            33456889999 67655555543   488999999988777765  333322222334556666653      5689999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccC--CCcc---eEEEEeCCCCeEEEEe
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIA--NPKG---LCAVSQGVGSLVLVCP  234 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~--~~~~---~~~~s~~~d~~~la~s  234 (298)
                      +|..+.+.+.++.+...-..++...+.+++.. +++|.++|..+.+.+.++....  .++.   .+.+.   ++.+.|. 
T Consensus       112 ~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~---~G~lyan-  187 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV---DGEIFAN-  187 (262)
T ss_dssp             EETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE---TTEEEEE-
T ss_pred             EECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE---CCEEEEE-
Confidence            99999999999998776677777777777664 4789999999999999987643  2221   12332   3466653 


Q ss_pred             cCCCceEEEEEcCCcceE-eecc----------c--ccceeEEEECCCCCEEEEEe
Q 022387          235 GLQKGQVRVEHYASKRTK-FIMA----------H--DSRIACFALTQDGQLLATSS  277 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~-~~~~----------H--~~~V~~l~fspdg~~lAt~S  277 (298)
                      .-.+..|.+-|..+.++. .+..          +  ....+.|||+|+++.|...+
T Consensus       188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            445667777777666543 2221          1  13579999999865544444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.63  E-value=1.8e-06  Score=78.10  Aligned_cols=196  Identities=10%  Similarity=0.033  Sum_probs=113.8

Q ss_pred             EEEEcCCCCEEEEEc-----------CCeEEEEEcCCCceEEEEeeec-------CCceEEEEEecCCCEEEEEeCCCCC
Q 022387           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFER-------GGGIGVVEMLFRCNILALVGGGPDP  151 (298)
Q Consensus        90 ~v~fs~dg~~lasgs-----------~~gi~vw~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  151 (298)
                      .+.|+|||++++++.           ++.+.+||..+.+...+... .       ......+.+++++..++++..+   
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-~~~~~~~~g~~P~~ia~SpDGk~lyVan~~---  144 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-PDAPRFSVGPRVHIIGNCASSACLLFFLFG---  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-TTSCSCCBSCCTTSEEECTTSSCEEEEECS---
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEccC---
Confidence            799999999888775           24478999999988766654 1       0234467778888888877632   


Q ss_pred             CCCCCeEEE--EeCCCCcEEEEeecCC-------------------ceEEEEEeC-------------------------
Q 022387          152 QYPLNKVMI--WDDHQSRCIGELSFRS-------------------EVRSVKLRR-------------------------  185 (298)
Q Consensus       152 ~~~d~~v~i--WD~~~~~~~~~~~~~~-------------------~v~~v~~~~-------------------------  185 (298)
                        ..+.|.+  +|..+   +.++....                   .+..+....                         
T Consensus       145 --~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~  219 (368)
T 1mda_H          145 --SSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA  219 (368)
T ss_dssp             --SSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE
T ss_pred             --CCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcccc
Confidence              1356888  88866   23332211                   111111111                         


Q ss_pred             ---CeEEEEECCeEEEEEcCCC--eEEEEEecc----------CCCcceEEEEeCCCCeEEEEec-C-C-----CceEEE
Q 022387          186 ---DRIIVVLEQKIFVYNFADL--KLLHQIETI----------ANPKGLCAVSQGVGSLVLVCPG-L-Q-----KGQVRV  243 (298)
Q Consensus       186 ---~~l~v~~~~~I~iwd~~~~--~~i~~~~~~----------~~~~~~~~~s~~~d~~~la~sG-s-~-----dg~v~i  243 (298)
                         ..++....+.|.+.|+...  +.+.++...          ......++++++++..+++. . . .     ++.+.+
T Consensus       220 ~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~-~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          220 NYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT-VEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE-EECSSCTTSCEEEEEE
T ss_pred             ccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe-ccccCcccccCCCEEE
Confidence               0111111144555565322  222222110          00111256777664334332 2 1 2     234558


Q ss_pred             EEcCCcce-EeecccccceeEEEECCCCC-EEEEEe-CCCCEEEEEECCCCcEEEec
Q 022387          244 EHYASKRT-KFIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       244 ~~~~~~~~-~~~~~H~~~V~~l~fspdg~-~lAt~S-~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|..+.+. ..+.... ....|+|+|||+ ++++.. .+++ |.|+|+.+++.++++
T Consensus       299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I  353 (368)
T 1mda_H          299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSV  353 (368)
T ss_dssp             EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEEC
T ss_pred             EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEE
Confidence            88876654 3444332 699999999997 677777 5898 999999999998875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.61  E-value=3.3e-06  Score=83.10  Aligned_cols=197  Identities=8%  Similarity=-0.027  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCEEEEEcC-Ce--------------EEEEEcCCCce--EEEEeeecCC--ceEEEEEecCCCEEEEEeCCC
Q 022387           89 LHISFNQDHGCFAAGTD-HG--------------FRIYNCDPFRE--IFRRDFERGG--GIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~-~g--------------i~vw~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      ..++|+|| +.|+.++. +.              +.+|++.+...  ...... ..+  .+..+.+++++..+++.+...
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            46889999 98887764 22              66888876542  222221 122  356677888888888776321


Q ss_pred             CCCCCCCeEEEEeCCCC--cEEEEeecC-CceEE-EEEeCCeEEEEEC-----CeEEEEEcCCC-eEEEEEeccCCCcce
Q 022387          150 DPQYPLNKVMIWDDHQS--RCIGELSFR-SEVRS-VKLRRDRIIVVLE-----QKIFVYNFADL-KLLHQIETIANPKGL  219 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~--~~~~~~~~~-~~v~~-v~~~~~~l~v~~~-----~~I~iwd~~~~-~~i~~~~~~~~~~~~  219 (298)
                      ..  ....|.+||+.++  ++...+... ..+.. +.-..+.+++.++     ..|.+||+.+. .....+..+... ..
T Consensus       290 ~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l  366 (741)
T 1yr2_A          290 TD--PVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NL  366 (741)
T ss_dssp             TC--SCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EE
T ss_pred             CC--CcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eE
Confidence            00  1358999999876  413333322 22222 3334566776653     46999999774 233344332221 12


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEEcC--CcceEeecc-cccceeEEEECCCCCEEE-EE---eCCCCEEEEEECCCCc
Q 022387          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMA-HDSRIACFALTQDGQLLA-TS---STKGTLVRIFNTLDGT  292 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~-H~~~V~~l~fspdg~~lA-t~---S~Dgt~IrIWd~~tg~  292 (298)
                      ..+++.. +.+++ +...+|..+||.+.  .+....+.. +.+.|..++++|+++.|+ +.   ..+++ |.+||+.+|+
T Consensus       367 ~~~~~~~-~~lv~-~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~-i~~~d~~tg~  443 (741)
T 1yr2_A          367 ESVGIAG-NRLFA-SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPAT-VLALDPATAK  443 (741)
T ss_dssp             EEEEEEB-TEEEE-EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEE-EEEEETTTTE
T ss_pred             EEEEEEC-CEEEE-EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE-EEEEECCCCc
Confidence            2344442 34444 57888888776543  444555554 367799999999987665 22   33577 9999999886


Q ss_pred             E
Q 022387          293 L  293 (298)
Q Consensus       293 ~  293 (298)
                      .
T Consensus       444 ~  444 (741)
T 1yr2_A          444 T  444 (741)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=6.3e-06  Score=70.67  Aligned_cols=145  Identities=8%  Similarity=-0.032  Sum_probs=104.9

Q ss_pred             CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE--EEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEecc
Q 022387          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETI  213 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~  213 (298)
                      ++..+..++|      .++.|+++|+.+++.+.++ .....+.  +.+..+.+.+++  ++.+.+||..+.+.+.++...
T Consensus        63 ~~~~Ly~stG------~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           63 HQGHFFESTG------HQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             ETTEEEEEET------TTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred             ECCEEEEEcC------CCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence            3566666664      3577999999999998888 7665544  778888888888  689999999999999999864


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeec--cccc---ceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHDS---RIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~--~H~~---~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      ...   ..+++++. .+++ + ..++.|.+.|..+.++ .++.  .+..   .++-|.|. +|+++|..-.++. |.+.|
T Consensus       136 ~eG---wGLt~Dg~-~L~v-S-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~-I~vID  207 (268)
T 3nok_A          136 GEG---WGLCYWNG-KLVR-S-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD-VLEID  207 (268)
T ss_dssp             SCC---CCEEEETT-EEEE-E-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE-EEEEC
T ss_pred             Cce---eEEecCCC-EEEE-E-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe-EEEEe
Confidence            332   34445542 3443 3 3477888888766443 3332  2332   35777887 8888888867777 99999


Q ss_pred             CCCCcEEEec
Q 022387          288 TLDGTLLQEG  297 (298)
Q Consensus       288 ~~tg~~l~~~  297 (298)
                      .++|+++..+
T Consensus       208 p~TG~V~~~I  217 (268)
T 3nok_A          208 PATGTVVGVI  217 (268)
T ss_dssp             TTTCBEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.60  E-value=4.2e-05  Score=66.41  Aligned_cols=192  Identities=6%  Similarity=0.006  Sum_probs=108.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeec---CCceEEEEEecCCCEEEEEeCCCCC--CCCCCeEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDP--QYPLNKVM  159 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~  159 (298)
                      ...+.++++++||+++++ ..+++.+|+.++.+.........   ......+.+..+++..+...+....  ......-.
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CCceEEEEECCCCCEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence            357999999999995554 47889999988766433322100   1123445566677755433221100  00123345


Q ss_pred             EEeCCC-CcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEc--CCCeEE--EEEecc-CCCcceEEEEeCCCCe
Q 022387          160 IWDDHQ-SRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNF--ADLKLL--HQIETI-ANPKGLCAVSQGVGSL  229 (298)
Q Consensus       160 iWD~~~-~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~--~~~~~i--~~~~~~-~~~~~~~~~s~~~d~~  229 (298)
                      ||.+.. ++.............++|+++  .+.++.  .+.|.+|++  .++++.  +.+... ......-.+..++++.
T Consensus       132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            554443 333322333334567888875  455554  378999997  444432  122111 1111223444566666


Q ss_pred             EEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEEC-CCCCE-EEEEeC
Q 022387          230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALT-QDGQL-LATSST  278 (298)
Q Consensus       230 ~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fs-pdg~~-lAt~S~  278 (298)
                      +.++ ....+.|..|+..+. .+..+..+...+++++|. ||++. ++|...
T Consensus       212 lwva-~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          212 LWVA-CYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEE-EETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEE-EcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            6663 556678888998744 445677777789999998 88764 455443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=2e-05  Score=67.50  Aligned_cols=183  Identities=9%  Similarity=0.060  Sum_probs=120.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      +..+.-...+.|+. +.++.+.+. +.++++|.++++.+... +  ........+...++.+..+..      .++.+.+
T Consensus        51 hd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~g~~Ly~ltw------~~~~v~V  120 (268)
T 3nok_A           51 HATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASDGERLYQLTW------TEGLLFT  120 (268)
T ss_dssp             CCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEECSSCEEEEES------SSCEEEE
T ss_pred             CCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEeCCEEEEEEc------cCCEEEE
Confidence            33444568889884 444445555 55889999998877666 5  233222223334556666553      5689999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc---eEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---LCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~---~~~~s~~~d~~~la~sGs  236 (298)
                      +|..+.+.+.++.+...-..++...+.++++. +++|.++|..+.+.+.++.....+..   ...+.+. ++.+.|. ..
T Consensus       121 ~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan-vw  198 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN-IW  198 (268)
T ss_dssp             EETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ET
T ss_pred             EECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE-EC
Confidence            99999999999998777778888888777765 57999999999999999886443221   1122222 3466653 44


Q ss_pred             CCceEEEEEcCCcceE-eecc-----------c--ccceeEEEECCCC-CEEEEE
Q 022387          237 QKGQVRVEHYASKRTK-FIMA-----------H--DSRIACFALTQDG-QLLATS  276 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~-----------H--~~~V~~l~fspdg-~~lAt~  276 (298)
                      ....|.+-|..+.++. .+..           +  ....+.|||+|++ ++|+||
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            5667777777666543 2221           1  1357999999975 666666

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.58  E-value=2.1e-05  Score=72.04  Aligned_cols=187  Identities=8%  Similarity=-0.080  Sum_probs=116.3

Q ss_pred             EEEcCCCCEEEEEcC-C--eEEEEEcCCCceEEEE-ee-e-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           91 ISFNQDHGCFAAGTD-H--GFRIYNCDPFREIFRR-DF-E-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        91 v~fs~dg~~lasgs~-~--gi~vw~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ++|+++|++|+++.. .  .+.+|+.......... .+ . .......+.+.+....+.++.       .++.|+.||..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d-------~~~~I~~~d~~  248 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVD-------SNKNFGRFNVK  248 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEEC-------TTCEEEEEETT
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEE-------CCCcEEEEECC
Confidence            899999998887765 3  4667776554332222 10 0 123344566666445555543       35789999998


Q ss_pred             CCcEEEE----eecC-Cce-E-EEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEeccCC-------------CcceE
Q 022387          165 QSRCIGE----LSFR-SEV-R-SVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIETIAN-------------PKGLC  220 (298)
Q Consensus       165 ~~~~~~~----~~~~-~~v-~-~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~-------------~~~~~  220 (298)
                      ++.....    .... ... . .+++++  ..+.++.  .+.|+.|+....  +..+..+..             -....
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            7754322    1111 111 3 888987  3555554  368999987543  334433220             01233


Q ss_pred             EEEeCCCCeEEEEecC-CCceEEEEEcCCcceEeeccc---------------ccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387          221 AVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFIMAH---------------DSRIACFALTQDGQLLATSSTKGTLVR  284 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs-~dg~v~i~~~~~~~~~~~~~H---------------~~~V~~l~fspdg~~lAt~S~Dgt~Ir  284 (298)
                      .+..++++.++++ .. .++.|+.++.....+.++.++               -.....|+++++|.++++-..+++ ||
T Consensus       327 gia~d~dG~lyva-d~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~-Ir  404 (409)
T 3hrp_A          327 GMTVDEDGNFYIV-DGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA-IR  404 (409)
T ss_dssp             EEEECTTCCEEEE-ETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE-EE
T ss_pred             EEEEeCCCCEEEE-eCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe-EE
Confidence            4555666666653 66 788999999766666666555               246899999999999999888888 88


Q ss_pred             EEEC
Q 022387          285 IFNT  288 (298)
Q Consensus       285 IWd~  288 (298)
                      .+++
T Consensus       405 ~i~~  408 (409)
T 3hrp_A          405 KYAV  408 (409)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.58  E-value=2.9e-05  Score=68.55  Aligned_cols=189  Identities=11%  Similarity=0.003  Sum_probs=108.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeec---CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..|.+++|++||+++++. .+++.+|+.++.+.........   ...+..+.+..+++..+...+.. .....+.|..+|
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe
Confidence            479999999999877754 6788899987766432222100   11244555666666544332110 000123455555


Q ss_pred             CCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcC--CC-eE--EEEEecc-CCCcceEEEEeCCCCeEEE
Q 022387          163 DHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFA--DL-KL--LHQIETI-ANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~--~~-~~--i~~~~~~-~~~~~~~~~s~~~d~~~la  232 (298)
                        +++.............++|+++  .+.++.  .+.|.+||+.  ++ +.  .+.+... ......-.+..+.++.+.+
T Consensus       168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence              4443322222234567888865  355554  3689999985  44 31  1122211 1112233455666667666


Q ss_pred             EecCCCceEEEEEcCCcceEeecccccceeEEEEC-CCCCEE-EEEeCC
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDGQLL-ATSSTK  279 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fs-pdg~~l-At~S~D  279 (298)
                      + ...++.|..|+.+.+.+..+..+...+++++|+ ++++.| ++...+
T Consensus       246 a-~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          246 A-RWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             E-EETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             E-EeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            3 444578888888665556666677789999998 897755 444444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.51  E-value=2.8e-05  Score=66.59  Aligned_cols=147  Identities=12%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE--EEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEeccC
Q 022387          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIA  214 (298)
Q Consensus       139 ~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~  214 (298)
                      ...+..++|..    ....|+++|+.+++.+.++......+.  +....+.+.+++  ++.+.+||..+.+.+.++....
T Consensus        52 ~~~LyestG~~----g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~  127 (262)
T 3nol_A           52 NGYFYESTGLN----GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG  127 (262)
T ss_dssp             TTEEEEEEEET----TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCEEEEECCCC----CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC
Confidence            34555554321    124899999999999999887766544  677888998888  6899999999999999998643


Q ss_pred             CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeecc--cc---cceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~--H~---~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ..   ..+++++  ..|.++ ...+.|.+.|-.+.++ .++..  ..   ..++.+.|. +|+++|..-.++. |.+.|.
T Consensus       128 eG---~glt~dg--~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~-I~vIDp  199 (262)
T 3nol_A          128 EG---WGLTHND--QYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK-IVRIDP  199 (262)
T ss_dssp             CC---CCEEECS--SCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EEEECT
T ss_pred             Cc---eEEecCC--CEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe-EEEEEC
Confidence            22   3444554  333332 3467788888775443 33322  22   335668886 8888888877777 999999


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      ++|+++..+
T Consensus       200 ~tG~V~~~I  208 (262)
T 3nol_A          200 ETGKVTGII  208 (262)
T ss_dssp             TTCBEEEEE
T ss_pred             CCCcEEEEE
Confidence            999998764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=0.00015  Score=61.38  Aligned_cols=182  Identities=10%  Similarity=0.032  Sum_probs=118.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ...-...+.|+. +.++.+.+..   .++++|.++++.+....+  ........+...++.+..+..      .++.+.+
T Consensus        19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw------~~~~v~v   89 (243)
T 3mbr_X           19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWRDRLIQLTW------RNHEGFV   89 (243)
T ss_dssp             TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEES------SSSEEEE
T ss_pred             CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEEeCCEEEEEEe------eCCEEEE
Confidence            344677899987 5544444443   588999999988777765  233222222233555665553      5689999


Q ss_pred             EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC--cc-eEEEEeCCCCeEEEEecC
Q 022387          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP--KG-LCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~--~~-~~~~s~~~d~~~la~sGs  236 (298)
                      +|..+.+.+.++.+...-..++...+.+.++. +++|.++|..+.+.+.+++...+.  +. ...+.+. ++.++|. .-
T Consensus        90 ~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan-vw  167 (243)
T 3mbr_X           90 YDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN-VW  167 (243)
T ss_dssp             EETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ET
T ss_pred             EECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE-EC
Confidence            99999999999998877778887777777664 479999999999999998864322  11 1122222 3456553 33


Q ss_pred             CCceEEEEEcCCcceE-eec--c-----------cccceeEEEECCCC-CEEEEE
Q 022387          237 QKGQVRVEHYASKRTK-FIM--A-----------HDSRIACFALTQDG-QLLATS  276 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~--~-----------H~~~V~~l~fspdg-~~lAt~  276 (298)
                      .+..|.+-|..+.++. .+.  +           -....+.|||+|++ ++|+||
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            4556666666665533 221  1           11357999999976 555555

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.47  E-value=0.00011  Score=67.55  Aligned_cols=195  Identities=11%  Similarity=0.045  Sum_probs=116.7

Q ss_pred             Ec--CCCCEEEEEcC--CeEEEEEcCCC--ceEEEEeee-------cC-CceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           93 FN--QDHGCFAAGTD--HGFRIYNCDPF--REIFRRDFE-------RG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        93 fs--~dg~~lasgs~--~gi~vw~~~~~--~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ++  .++++|.+.+.  +.|.|+|+.+.  +........       .+ ..-..+.+.+++ .++.+.|+.+. -..+.|
T Consensus        89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g-~~~g~v  166 (462)
T 2ece_A           89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG-EGPGGI  166 (462)
T ss_dssp             CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS-CSCCEE
T ss_pred             cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC-CCCCeE
Confidence            36  88998887664  44889998643  322222220       01 012233455666 44433332111 135889


Q ss_pred             EEEeCCCCcEEEEeecCC----ceEEEEEeCC--eEEEEE--------------------CCeEEEEEcCCCeEEEEEec
Q 022387          159 MIWDDHQSRCIGELSFRS----EVRSVKLRRD--RIIVVL--------------------EQKIFVYNFADLKLLHQIET  212 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~----~v~~v~~~~~--~l~v~~--------------------~~~I~iwd~~~~~~i~~~~~  212 (298)
                      .+.|..+.+.+.++....    -.+.+.++++  .+++..                    .++|.+||+.+.+.+.++..
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            999999999999887432    1334666654  344432                    47999999999998888886


Q ss_pred             cCCCc--ceEEEEeCCCCeEEEEecC-----CCceEEEEEcCCcceE---e--eccc----------------ccceeEE
Q 022387          213 IANPK--GLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYASKRTK---F--IMAH----------------DSRIACF  264 (298)
Q Consensus       213 ~~~~~--~~~~~s~~~d~~~la~sGs-----~dg~v~i~~~~~~~~~---~--~~~H----------------~~~V~~l  264 (298)
                      .....  .-+.|.+++++.+..+.+.     .++.|.+|..+.+...   .  +...                ...+..|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            42211  1234555666665555455     6778877554332211   1  1110                2458899


Q ss_pred             EECCCCCEEEEEeCCCCEEEEEECC
Q 022387          265 ALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       265 ~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .+|+||++|-.+......|.+||+.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEec
Confidence            9999999888776644349999986

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.47  E-value=2.7e-05  Score=76.00  Aligned_cols=196  Identities=12%  Similarity=0.040  Sum_probs=120.4

Q ss_pred             EEEEEcCCCCEEEEEcCC-e-------------EEEEEcCCCce--EEEEeeec--CCceEEEEEecCCCEEEEEeCCCC
Q 022387           89 LHISFNQDHGCFAAGTDH-G-------------FRIYNCDPFRE--IFRRDFER--GGGIGVVEMLFRCNILALVGGGPD  150 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~-g-------------i~vw~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..++|+ ||+.|+.++.+ .             +.+|++.+...  ....+...  ......+.+++++..+++......
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 99988877653 1             67888876542  22222100  112455677888888877653221


Q ss_pred             CCCCCCeEEEEeCCCCc-EEEEeecC-CceEE-EEEeCCeEEEEEC-----CeEEEEEcCCCeE--EEEEeccCCCcceE
Q 022387          151 PQYPLNKVMIWDDHQSR-CIGELSFR-SEVRS-VKLRRDRIIVVLE-----QKIFVYNFADLKL--LHQIETIANPKGLC  220 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~-~~~~~~~~-~~v~~-v~~~~~~l~v~~~-----~~I~iwd~~~~~~--i~~~~~~~~~~~~~  220 (298)
                         ..+.|.+||+.++. ....+... ..... +....+.+++.++     ..|..+|+.+.+.  .+.+..+.....  
T Consensus       257 ---~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--  331 (693)
T 3iuj_A          257 ---SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--  331 (693)
T ss_dssp             ---SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--
T ss_pred             ---CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--
Confidence               34689999998763 23334332 22323 3444566666653     4899999976543  345555544332  


Q ss_pred             EEEeCCCCeEEEEecCCCc--eEEEEEcCCcceEeec-ccccceeEEEECCCCCEEEEEeCC----CCEEEEEECCCCcE
Q 022387          221 AVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTL  293 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~~~~~~-~H~~~V~~l~fspdg~~lAt~S~D----gt~IrIWd~~tg~~  293 (298)
                      .+++++  ..|++....+|  .|.+|+.+.+....+. .+.+.+..+.++++++.|+....+    ++ |.+||+.+++.
T Consensus       332 ~~s~~g--~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~-l~~~d~~~g~~  408 (693)
T 3iuj_A          332 TVHSGS--GYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT-LYRFEPKSGAI  408 (693)
T ss_dssp             EEEEET--TEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE-EEEECTTTCCE
T ss_pred             EEEEEC--CEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE-EEEEECCCCeE
Confidence            777765  44554456666  5666888766555443 345668888889998766655434    67 99999988763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=9.4e-05  Score=62.65  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=105.3

Q ss_pred             cCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceE--EEEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEec
Q 022387          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR--SVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIET  212 (298)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~--~v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~  212 (298)
                      +++..+..++|..    ....|+++|+.+++.+.++......+  .+.+..+.+.+++  ++.+.+||..+.+.+.++..
T Consensus        28 ~~~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           28 YLRGHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             EETTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            3445666665432    24689999999999999988776543  4577788888887  68999999999999999986


Q ss_pred             cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeec--ccc---cceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHD---SRIACFALTQDGQLLATSSTKGTLVRIF  286 (298)
Q Consensus       213 ~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~--~H~---~~V~~l~fspdg~~lAt~S~Dgt~IrIW  286 (298)
                      ....   ..++.++. .+++ | ..++.|.+.|..+..+ .++.  .+.   ..++-|.+. +|+++|..-.+.. |.+.
T Consensus       104 ~~~G---wglt~dg~-~L~v-S-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~-I~vI  175 (243)
T 3mbr_X          104 PGEG---WALTSDDS-HLYM-S-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR-IARI  175 (243)
T ss_dssp             SSCC---CEEEECSS-CEEE-E-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE-EEEE
T ss_pred             CCCc---eEEeeCCC-EEEE-E-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe-EEEE
Confidence            5432   34455542 3443 2 3467888888766443 3332  232   245667766 7888888866777 9999


Q ss_pred             ECCCCcEEEec
Q 022387          287 NTLDGTLLQEG  297 (298)
Q Consensus       287 d~~tg~~l~~~  297 (298)
                      |.++|+++..+
T Consensus       176 Dp~tG~V~~~i  186 (243)
T 3mbr_X          176 DPASGKVVAWI  186 (243)
T ss_dssp             CTTTCBEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.44  E-value=0.0001  Score=64.19  Aligned_cols=194  Identities=11%  Similarity=-0.002  Sum_probs=109.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEE-eee--cCCceEEEEEecCCCEEEEEe--CCC--------
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRR-DFE--RGGGIGVVEMLFRCNILALVG--GGP--------  149 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~--~~~--------  149 (298)
                      +...+.+++++++|+++++... +++.+|+.+ ++..... ...  ....+..+.+..+++..++-.  +..        
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            3456899999999998777655 678888876 3322111 110  011223455666666554311  000        


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC-------CeEEEEEcCCCeEE--EEEeccCCCcc
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE-------QKIFVYNFADLKLL--HQIETIANPKG  218 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~-------~~I~iwd~~~~~~i--~~~~~~~~~~~  218 (298)
                      ......+.|..+|..+++..... .......++|+++  .+.++..       +.|.+|++....+.  ..+... ....
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~  240 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGL  240 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSC
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCC
Confidence            00001256888888766544332 2234567888875  3555543       58999998654411  111110 1111


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEE
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI  285 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrI  285 (298)
                      .-.+..+.++.+.+  +..+| |.+|+.+.+.+..+..+. .+.+++|+++++.|..++.++- .++
T Consensus       241 pdgi~~d~~G~lwv--~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l-~~~  302 (305)
T 3dr2_A          241 PDGFCVDRGGWLWS--SSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL-WML  302 (305)
T ss_dssp             CCSEEECTTSCEEE--CCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE-EEE
T ss_pred             CCeEEECCCCCEEE--ecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE-EEE
Confidence            11234455667666  34444 888888766666665554 5999999999987777766543 444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.42  E-value=0.00033  Score=60.26  Aligned_cols=155  Identities=11%  Similarity=-0.007  Sum_probs=109.6

Q ss_pred             EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEEeCCeEEEEE--CCeEEEEEcCCCeE
Q 022387          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKL  206 (298)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~l~v~~--~~~I~iwd~~~~~~  206 (298)
                      ..+.+..+ ..+..+++..    .++.|++.|..+++.+.++....  ....+.+..+.+.++.  ++.+.++|..+.+.
T Consensus        24 ~Gl~~~~d-g~Lyvstg~~----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           24 QGLVYAEN-DTLFESTGLY----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEECST-TEEEEEECST----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE
T ss_pred             ccEEEeCC-CeEEEECCCC----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE
Confidence            45566654 3555555321    35789999999999998887644  3345777888888887  58999999999999


Q ss_pred             EEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeec--ccc---cceeEEEECCCCCEEEEEeCCC
Q 022387          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHD---SRIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       207 i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~--~H~---~~V~~l~fspdg~~lAt~S~Dg  280 (298)
                      +.++... .+. -..+++++.. +++ + ..++.|.+.|..+.++ ..+.  .+.   ..++.+.|. +|+++|....++
T Consensus        99 ~~~i~~g-~~~-g~glt~Dg~~-l~v-s-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A           99 IKNFTHQ-MKD-GWGLATDGKI-LYG-S-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             EEEEECC-SSS-CCEEEECSSS-EEE-E-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEECC-CCC-eEEEEECCCE-EEE-E-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence            9998765 232 2457776533 333 2 3578999988776443 3332  222   247788998 888888887777


Q ss_pred             CEEEEEECCCCcEEEec
Q 022387          281 TLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       281 t~IrIWd~~tg~~l~~~  297 (298)
                      . |.+-|..+|+++.++
T Consensus       173 ~-V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          173 C-IARISAKDGTLLGWI  188 (266)
T ss_dssp             E-EEEEETTTCCEEEEE
T ss_pred             e-EEEEECCCCcEEEEE
Confidence            7 999999999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.41  E-value=5e-05  Score=66.14  Aligned_cols=193  Identities=10%  Similarity=-0.014  Sum_probs=109.9

Q ss_pred             CCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      .-..+..|+++|+ ++.++.. +++..|+.. .+. ..... +......+.+..++++++...       ..+.|.+||.
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~-~~~~~~gl~~d~dG~l~v~~~-------~~~~v~~~~~  114 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD-ATAFTNGNAVDAQQRLVHCEH-------GRRAITRSDA  114 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE-SCSCEEEEEECTTSCEEEEET-------TTTEEEEECT
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC-CCCccceeeECCCCCEEEEEC-------CCCEEEEECC
Confidence            3567899999999 5556665 557788773 332 22221 245566777777777544332       2367999998


Q ss_pred             CCCcEEEEee-cC----CceEEEEEeCCeEEEEEC--------------------CeEEEEEcCCCeEEEEEeccCCCcc
Q 022387          164 HQSRCIGELS-FR----SEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIETIANPKG  218 (298)
Q Consensus       164 ~~~~~~~~~~-~~----~~v~~v~~~~~~l~v~~~--------------------~~I~iwd~~~~~~i~~~~~~~~~~~  218 (298)
                      . ++...... ..    ..+..+.++++.-+..++                    +.|..||..+++..... . .....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~~~p~  191 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-LDHPN  191 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-ESSEE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-CCCCc
Confidence            6 54322211 11    235567787765444421                    35666776555443222 2 12223


Q ss_pred             eEEEEeCCCCeEEEEecCC-----CceEEEEEcCCcceE---ee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          219 LCAVSQGVGSLVLVCPGLQ-----KGQVRVEHYASKRTK---FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~-----dg~v~i~~~~~~~~~---~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .+++++  |+..|.++.+.     ++.|.+++.....+.   .+ ......+..|+++++|+++++.  .+. |.+|+. 
T Consensus       192 gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~--~~g-v~~~~~-  265 (305)
T 3dr2_A          192 GLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS--GTG-VCVFDS-  265 (305)
T ss_dssp             EEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC--SSE-EEEECT-
T ss_pred             ceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec--CCc-EEEECC-
Confidence            345544  44544433333     267888887643221   11 2234457789999999977766  345 899997 


Q ss_pred             CCcEEEec
Q 022387          290 DGTLLQEG  297 (298)
Q Consensus       290 tg~~l~~~  297 (298)
                      +|+.+.++
T Consensus       266 ~g~~~~~~  273 (305)
T 3dr2_A          266 DGQLLGHI  273 (305)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            57766554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.37  E-value=7.1e-05  Score=67.90  Aligned_cols=191  Identities=9%  Similarity=0.002  Sum_probs=118.9

Q ss_pred             EEEcCCCCEEEEEcC------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC-C--CCCCCeEEEE
Q 022387           91 ISFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-P--QYPLNKVMIW  161 (298)
Q Consensus        91 v~fs~dg~~lasgs~------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~d~~v~iW  161 (298)
                      +...||++.+.+...      +.+.++|..+.+.+.+...  ..... +.+++++..++++..-.. .  .-.++.|.+|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            345688887776643      3477899999887766664  33334 888999988877651000 0  0024679999


Q ss_pred             eCCCCcEEEEeecCC--------ceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387          162 DDHQSRCIGELSFRS--------EVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (298)
Q Consensus       162 D~~~~~~~~~~~~~~--------~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~  228 (298)
                      |..+.+.+.++....        ....+.+++  ++++++.   ++.|.++|+.+.+.+.++....    +..+.+.+..
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~  190 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPD  190 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETT
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCc
Confidence            999999988886532        344577776  4566664   3799999999999999987532    1222233322


Q ss_pred             eEEEEecCCCceEEEEEcCC-cceE-eeccc----ccce-eEEEEC-CCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          229 LVLVCPGLQKGQVRVEHYAS-KRTK-FIMAH----DSRI-ACFALT-QDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~-~~~~-~~~~H----~~~V-~~l~fs-pdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .+++  .+.||.+.+.+... ..+. +...+    ..++ ...+|. ++|+++. .+.+|+ |.+.|+.+++
T Consensus       191 ~~~~--~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~  258 (386)
T 3sjl_D          191 TFFM--HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGD  258 (386)
T ss_dssp             EEEE--EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSS
T ss_pred             eeEE--ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCc
Confidence            3443  35577777766643 2321 11111    1222 234664 7886544 555888 9999997664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.36  E-value=0.00019  Score=64.03  Aligned_cols=188  Identities=10%  Similarity=0.046  Sum_probs=110.0

Q ss_pred             CCEEEEEcC-CeEEEEEcCCCceEEEEeeecC-------CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFERG-------GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (298)
Q Consensus        97 g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~  168 (298)
                      +..|.+++. +.+..||.++++.++.......       ..............+.+.+       .++.|..+|..+++.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS-------EKAQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE-------TTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc-------CCCEEEEEECCCCCE
Confidence            455666665 5678999999888777664100       1111112222345555555       468899999999998


Q ss_pred             EEEeecCCceE-EEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCc-----ceEEEEeCCCCeEEEEecCCCceE
Q 022387          169 IGELSFRSEVR-SVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       169 ~~~~~~~~~v~-~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      +........+. ......+.+++.+ ++.|..+|..+++.+.++.......     ....+.   ++.+++  |..+|.|
T Consensus       126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~--g~~~g~l  200 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVV--GGDNGRV  200 (376)
T ss_dssp             EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEE--CCTTTEE
T ss_pred             EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEE--EcCCCEE
Confidence            87776654332 2234456666665 4789999999999888876543221     222222   234444  7888888


Q ss_pred             EEEEcCCcceE-eeccccc-------ceeEEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          242 RVEHYASKRTK-FIMAHDS-------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       242 ~i~~~~~~~~~-~~~~H~~-------~V~~l~fsp--dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..++..+.... .......       .+..+.-.|  .+..+..++.++. +..+|.++|+.+.++
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKR  265 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEE
T ss_pred             EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeec
Confidence            88887665433 3221100       000010111  2345666667888 888888888877553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.28  E-value=0.00086  Score=60.45  Aligned_cols=116  Identities=7%  Similarity=-0.131  Sum_probs=75.9

Q ss_pred             EcCCCCEEEEEc--C-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC---CCCCCeEEEEeC
Q 022387           93 FNQDHGCFAAGT--D-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDD  163 (298)
Q Consensus        93 fs~dg~~lasgs--~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~v~iWD~  163 (298)
                      ..||+.++.+..  . +   .+.+||.++.+.+.....  ...- .+.+++++..++++......   ...++.|.+||.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--GFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--CCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            346776555443  2 2   667999998876655442  2223 77888899888887521000   002578999999


Q ss_pred             CCCcEEEEeecC--------CceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEE-Eec
Q 022387          164 HQSRCIGELSFR--------SEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQ-IET  212 (298)
Q Consensus       164 ~~~~~~~~~~~~--------~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~-~~~  212 (298)
                      .+.+.+.++...        .....+.+++  ++++++.   ++.|.++| .+++.+.+ +..
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~  166 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS  166 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC
Confidence            998888777653        1234567765  4666664   36899999 99998877 653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.27  E-value=0.00054  Score=61.12  Aligned_cols=182  Identities=9%  Similarity=0.030  Sum_probs=111.8

Q ss_pred             CCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387           96 DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (298)
Q Consensus        96 dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (298)
                      ++..|.+++. +.+..+|.++++..+....  ...+...... ....+++.+       .++.|..+|..+++.+.....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~--~~~~~~~p~~-~~~~v~v~~-------~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV--AGEALSRPVV-SDGLVLIHT-------SNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEEC--SSCCCSCCEE-ETTEEEEEC-------TTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeC--CCceEcCCEE-ECCEEEEEc-------CCCeEEEEECCCCcEEEEEeC
Confidence            3445555655 5588999999988777664  2222111111 133444544       468899999999998877765


Q ss_pred             CCceE------EEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-----------cceEEEEeCCCCeEEEEecC
Q 022387          175 RSEVR------SVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-----------KGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       175 ~~~v~------~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-----------~~~~~~s~~~d~~~la~sGs  236 (298)
                      ...+.      ......+.++++. ++.|..+|..+++.+.++......           .....+.   ++.+++  ++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~v~~--~~  246 (376)
T 3q7m_A          172 DMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV---NGVVFA--LA  246 (376)
T ss_dssp             CC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE---TTEEEE--EC
T ss_pred             CCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE---CCEEEE--Ee
Confidence            44332      2233455666655 478999999999988877643110           0111222   234554  57


Q ss_pred             CCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+|.+..++..+.... ...  ......+..  ++..|..++.++. |..+|..+|+.+.++
T Consensus       247 ~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQ  303 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEE
T ss_pred             cCcEEEEEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEee
Confidence            7888888888765543 322  223444444  3556777778999 999999999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.27  E-value=1e-07  Score=86.23  Aligned_cols=143  Identities=11%  Similarity=0.016  Sum_probs=75.3

Q ss_pred             CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEe-CCeEEEE--ECCeEEEEEcCCCeEEEEEeccC
Q 022387          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVV--LEQKIFVYNFADLKLLHQIETIA  214 (298)
Q Consensus       138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-~~~l~v~--~~~~I~iwd~~~~~~i~~~~~~~  214 (298)
                      ....+++++       .|+.|+.||..+++.+.++.. ..+.+..+. .+.+++.  .++.|+.||..+++.+.++..+.
T Consensus         8 ~~~~v~~gs-------~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A            8 PETLLFVST-------LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             CTTEEEEEE-------TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             eCCEEEEEc-------CCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            345566665       578999999999999888776 444433332 2334443  36899999998887766654321


Q ss_pred             C-Cc-ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          215 N-PK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       215 ~-~~-~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      . .. ....+.  .+ ..++ .|+.+|.|..||..+++. ..+..+.    .+.++|++..+++++.|+. |+.||.++|
T Consensus        80 ~~~~~~sp~~~--~~-~~v~-~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG  150 (369)
T 2hz6_A           80 PELVQASPCRS--SD-GILY-MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR  150 (369)
T ss_dssp             HHHHTTCSCC--------CC-CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS
T ss_pred             ccccccCceEe--cC-CEEE-EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC
Confidence            0 00 111111  12 3344 388899999999886654 3554443    2456778899999999999 999999999


Q ss_pred             cEEEec
Q 022387          292 TLLQEG  297 (298)
Q Consensus       292 ~~l~~~  297 (298)
                      +++.++
T Consensus       151 ~~~W~~  156 (369)
T 2hz6_A          151 ELRWNA  156 (369)
T ss_dssp             SCCCEE
T ss_pred             CEEEeE
Confidence            987553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.26  E-value=5.3e-05  Score=67.31  Aligned_cols=192  Identities=12%  Similarity=0.043  Sum_probs=109.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc------CCeEEEEEcCCCceEEEEeee-----cCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           84 PPPTLLHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs------~~gi~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      +-..+.+|+|+++|+++++..      ...+.+||..+.+.+....+.     +......+.+..+...+.++..+..  
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--  142 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--  142 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--
Confidence            335799999999998777654      356889999887755555441     0112344555544444444432100  


Q ss_pred             CCCCeEEEEeCCCCcEEEEeecC------------------------------CceEEEEEeCCe--EEEEEC--CeEEE
Q 022387          153 YPLNKVMIWDDHQSRCIGELSFR------------------------------SEVRSVKLRRDR--IIVVLE--QKIFV  198 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~------------------------------~~v~~v~~~~~~--l~v~~~--~~I~i  198 (298)
                       .++.|.+||..+++..+.+..+                              ..+..++++++.  +.++..  ..|..
T Consensus       143 -~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          143 -DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             -GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred             -CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence             2478999999887765544220                              113557777653  444432  34444


Q ss_pred             EEcC---CCe-----EEE--EEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc--cccceeEEEE
Q 022387          199 YNFA---DLK-----LLH--QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFAL  266 (298)
Q Consensus       199 wd~~---~~~-----~i~--~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~--H~~~V~~l~f  266 (298)
                      ++..   +..     ...  ....+......+++  ++++.+++ +...++.|.+|+.....+..+..  +...+++|+|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~--d~~G~l~v-a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISI--DKDHNIYV-GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE--CTTCCEEE-EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccCCCCceEEE--CCCCCEEE-EccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            4431   110     000  01111111223444  44556666 37778899999983333433322  2456999999


Q ss_pred             CCCCCEEEEEeCCCC
Q 022387          267 TQDGQLLATSSTKGT  281 (298)
Q Consensus       267 spdg~~lAt~S~Dgt  281 (298)
                      .++|+++++.+..+.
T Consensus       299 ~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          299 GSDGYLYFDCNQLHH  313 (343)
T ss_dssp             CTTSCEEEEECCGGG
T ss_pred             CCCCcEEEEeCcccc
Confidence            999999999876554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.24  E-value=0.00019  Score=65.96  Aligned_cols=188  Identities=10%  Similarity=-0.011  Sum_probs=120.1

Q ss_pred             CCCCEEEEEcC------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC---CCCCCeEEEEeCCC
Q 022387           95 QDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVMIWDDHQ  165 (298)
Q Consensus        95 ~dg~~lasgs~------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~v~iWD~~~  165 (298)
                      +|++++++...      +.+.++|..+.+.+.+...  ...- .+.+++++..++++......   .-.++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            46665554433      3577999999988777765  3333 68889999888776520000   00246899999999


Q ss_pred             CcEEEEeecC--------CceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387          166 SRCIGELSFR--------SEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       166 ~~~~~~~~~~--------~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      ++.+.++...        .....+.+++  ++++++.   ++.|.++|+.+.+.+.++....    +..+.+++...+++
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~  234 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYM  234 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEE
Confidence            9998887653        2234566765  4667664   3689999999999999988532    23444444445555


Q ss_pred             EecCCCceEEEEEcCCcceE-----eecccccc-eeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          233 CPGLQKGQVRVEHYASKRTK-----FIMAHDSR-IACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~-----~~~~H~~~-V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .  +.||.+.+.+.....+.     .+.....+ ...+.|+++|..++-.+..++ |.+.|+.+++
T Consensus       235 ~--~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~  297 (426)
T 3c75_H          235 N--CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEG  297 (426)
T ss_dssp             E--ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSC
T ss_pred             E--cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCc
Confidence            3  45676666554433322     11111122 234678999988777788887 9999986543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.23  E-value=0.0003  Score=64.78  Aligned_cols=187  Identities=13%  Similarity=0.163  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCEEEEEcC-------CeEEEEEcCCCceEEEEeeecCCc--eE-EEEEecCCCEEEEEeCC--------CC
Q 022387           89 LHISFNQDHGCFAAGTD-------HGFRIYNCDPFREIFRRDFERGGG--IG-VVEMLFRCNILALVGGG--------PD  150 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~-------~gi~vw~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~--------~~  150 (298)
                      ..+...||| ++++...       +++.++|.++.+.+.+++.. .+.  +. -+-+.++.+.++++..+        .+
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~-~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID-RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB-CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC-CCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            345678999 5554433       36889999998887666531 111  11 13446777766666422        00


Q ss_pred             CC----CCCCeEEEEeCCCCcEEEEeecC---CceEEEEE--eCC--eEEEE-------ECCeEEEEEcCCCe--EEEEE
Q 022387          151 PQ----YPLNKVMIWDDHQSRCIGELSFR---SEVRSVKL--RRD--RIIVV-------LEQKIFVYNFADLK--LLHQI  210 (298)
Q Consensus       151 ~~----~~d~~v~iWD~~~~~~~~~~~~~---~~v~~v~~--~~~--~l~v~-------~~~~I~iwd~~~~~--~i~~~  210 (298)
                      ..    ....+|.+||+.+++.+.++...   .....+.|  +++  ...++       .+++|.+|...+++  .++.+
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence            00    02588999999999888888774   23444555  664  33333       23577776554332  22222


Q ss_pred             eccCC----------------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc----ceEeeccc-------------
Q 022387          211 ETIAN----------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAH-------------  257 (298)
Q Consensus       211 ~~~~~----------------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~----~~~~~~~H-------------  257 (298)
                      .....                ......+..++|+.+|-++....+.|.++++...    .+..+...             
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence            11110                1122334444455766666777899999987521    12222211             


Q ss_pred             -ccceeEEEECCCCCEEEEEe
Q 022387          258 -DSRIACFALTQDGQLLATSS  277 (298)
Q Consensus       258 -~~~V~~l~fspdg~~lAt~S  277 (298)
                       .+..+.++++|||++|..+.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence             01369999999999888887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.22  E-value=0.0018  Score=54.85  Aligned_cols=199  Identities=5%  Similarity=-0.122  Sum_probs=114.3

Q ss_pred             CeEEEEEcCCCCEEEEEc-C-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs-~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .+.+++|++++..|..+. . +.|.+++.+.......... .......+.+......+.++..      ..+.|.++|..
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~------~~~~I~~~~~~  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEEC------CCCEEEEEEcC
Confidence            567999999776655544 3 4577888876543222211 1134566667766666666553      34789999986


Q ss_pred             CCcEEEEeecC-CceEEEEEeC--CeEEEEEC----CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecC
Q 022387          165 QSRCIGELSFR-SEVRSVKLRR--DRIIVVLE----QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~~----~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      .......+... .....+++++  ..+.++..    +.|..+++... ....+. ........++++++.+ .+++ +..
T Consensus       110 g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~-~lyv-~d~  186 (267)
T 1npe_A          110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSS-QLCW-VDA  186 (267)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTT-EEEE-EET
T ss_pred             CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCC-EEEE-EEC
Confidence            54322222222 3467788876  45666542    47888887432 223332 1111122344544332 3333 366


Q ss_pred             CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..+.|.+.+........+.........|++. ++.++++....+. |.++|..+|+.++++
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~-v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTF  245 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe-EEEEeCCCCCceEEE
Confidence            7788988888755433322222345677765 4556665555667 999999999987764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.19  E-value=7.6e-05  Score=64.95  Aligned_cols=181  Identities=10%  Similarity=-0.022  Sum_probs=111.2

Q ss_pred             CCCEEEEEc-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (298)
Q Consensus        96 dg~~lasgs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (298)
                      ++ .|..|+ ++++..++.+ ++....... ....+.......++. +.+++       .++.|..+|.. ++.+..+..
T Consensus       107 ~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~~g~-l~vgt-------~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          107 ED-ILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPIVSEDGT-IYVGS-------NDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             TT-EEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTSC-EEEEC-------TTSEEEEECTT-SCEEEEEEC
T ss_pred             CC-EEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeEEcCCCE-EEEEc-------CCCEEEEECCC-CCEeEEEec
Confidence            44 455565 4678888877 555554443 122222222232333 44444       35789999998 777666655


Q ss_pred             CC-ceEEEEEe-CCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE
Q 022387          175 RS-EVRSVKLR-RDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (298)
Q Consensus       175 ~~-~v~~v~~~-~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~  252 (298)
                      .. .+.++... ...+.+++ +.|..|| .+++.+.++......+..+.+  ++++.+.+  |+.++.|..++.+.+...
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g~l~v--~t~~~gl~~~~~~g~~~~  248 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAI--SEDGTIYV--TSLDGHLYAINPDGTEKW  248 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEE--CTTSCEEE--EETTTEEEEECTTSCEEE
T ss_pred             CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEE--CCCCeEEE--EcCCCeEEEECCCCCEeE
Confidence            43 45556664 45666667 8999999 777777666654444444444  44556665  466666777676555555


Q ss_pred             eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       253 ~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+......+.++.+.++|.+. .++.+|. |..+|. +|+.+.++
T Consensus       249 ~~~~~~~~~~~~~~~~~g~l~-v~t~~gg-l~~~d~-~g~~~~~~  290 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTDTIY-FGSYDGH-LYAINP-DGTEKWNF  290 (330)
T ss_dssp             EEECSSCCCSCCEECTTSCEE-EECTTCE-EEEECT-TSCEEEEE
T ss_pred             EeeCCCCccccceEcCCCeEE-EecCCCC-EEEECC-CCcEEEEE
Confidence            555555556677777777655 4566888 889995 78776554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.18  E-value=8.6e-05  Score=72.45  Aligned_cols=57  Identities=18%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             ceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          239 GQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       239 g~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.|..||..+.++. .+. +..++....+..+|.+++.++.||. +++||.++|+++++|
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCc-EEEEECCCCceeeee
Confidence            77888998877654 433 4455666677778888888999999 999999999999876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.17  E-value=0.00017  Score=62.66  Aligned_cols=185  Identities=13%  Similarity=0.069  Sum_probs=112.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      .+.++...++|.+++...++++..|+.+ ++....... ....+..+....++. +. ++       . +.|..+| .++
T Consensus       138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~-l~-v~-------t-~~l~~~d-~~g  204 (330)
T 3hxj_A          138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGT-IY-FG-------S-DKVYAIN-PDG  204 (330)
T ss_dssp             CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCC-EE-EE-------S-SSEEEEC-TTS
T ss_pred             eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCE-EE-EE-------e-CEEEEEC-CCC
Confidence            3455666778875554444778888887 555544443 122222222323333 22 33       2 4588999 676


Q ss_pred             cEEEEeecC-CceEEEEEeCC-eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE
Q 022387          167 RCIGELSFR-SEVRSVKLRRD-RIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (298)
Q Consensus       167 ~~~~~~~~~-~~v~~v~~~~~-~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i  243 (298)
                      +.+...... ..+.++...++ .+.+++. +.|..+|. +++.+..+.........+.+  +.++.+.+  |+.+|.|..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~--~~~g~l~v--~t~~ggl~~  279 (330)
T 3hxj_A          205 TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVI--GNTDTIYF--GSYDGHLYA  279 (330)
T ss_dssp             CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEE--CTTSCEEE--ECTTCEEEE
T ss_pred             cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceE--cCCCeEEE--ecCCCCEEE
Confidence            666555543 35667777765 6777764 78888874 56666666654333333333  44455555  677877777


Q ss_pred             EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       244 ~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      ++.+.+....+......+.++...++|++++ ++.+|. +++...+..
T Consensus       280 ~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~-~~~~~~~~~  325 (330)
T 3hxj_A          280 INPDGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGK-FYALFNLEH  325 (330)
T ss_dssp             ECTTSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSC-EEEEEC---
T ss_pred             ECCCCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCe-EEEEecccc
Confidence            7765444445554566788999989998766 667998 888776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.16  E-value=0.00085  Score=61.29  Aligned_cols=141  Identities=12%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEE-e
Q 022387          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL-R  184 (298)
Q Consensus       106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~-~  184 (298)
                      ..+.|.|+.......++..  ..+-.  -+.+....+|+-.+        +++.|+|+++.+.+..+.+...|.-+.| +
T Consensus        48 ~~vvIiDl~~~~~~~rrpi--~AdsA--IMnP~~~iiALrag--------~~lQiFnle~K~klks~~~~e~VvfWkWis  115 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI--SADSA--IMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC--CCSEE--EECSSSSCEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred             CeEEEEECCCCCcceeccc--cccee--eeCCCCcEEEEecC--------CeEEEEchHHhhhhcceecCCCceEEEecC
Confidence            4578999988776666664  33333  35667777887662        7899999999999999999999988887 6


Q ss_pred             CCeEEEEECCeEEEEEcC-CCeEEEEEeccCC--CcceEEEEeCCCCeEEEEecC------CCceEEEEEcCCcceEeec
Q 022387          185 RDRIIVVLEQKIFVYNFA-DLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL------QKGQVRVEHYASKRTKFIM  255 (298)
Q Consensus       185 ~~~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sGs------~dg~v~i~~~~~~~~~~~~  255 (298)
                      ++.+.++++..|+-|++. +..+.+.|..|..  ...++.+..+++..+++..|-      ..|.+.+|..+.+....+.
T Consensus       116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie  195 (494)
T 1bpo_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (494)
T ss_dssp             TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC
T ss_pred             CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe
Confidence            788889999999999995 4567777776653  345667777888777776553      4577888887665544555


Q ss_pred             ccc
Q 022387          256 AHD  258 (298)
Q Consensus       256 ~H~  258 (298)
                      +|.
T Consensus       196 Gha  198 (494)
T 1bpo_A          196 GHA  198 (494)
T ss_dssp             CSE
T ss_pred             eee
Confidence            554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.15  E-value=0.00013  Score=71.07  Aligned_cols=188  Identities=7%  Similarity=0.061  Sum_probs=112.8

Q ss_pred             CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCc---------eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGG---------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      ..|.+++. +.+.-+|..+++.+++.... ...         ............+++.+       .|+.|..+|..+++
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~v~v~~-------~dg~l~alD~~tG~  149 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQ-IDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGRLIALDAATGK  149 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCC-CCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCC
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCC-CCccccccccccCCCCCceEECCEEEEEc-------CCCEEEEEECCCCC
Confidence            34444443 45667788888877766541 110         00000111344555554       46899999999999


Q ss_pred             EEEEeecC------CceE-EEEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccCCCc----------------
Q 022387          168 CIGELSFR------SEVR-SVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK----------------  217 (298)
Q Consensus       168 ~~~~~~~~------~~v~-~v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~~~~----------------  217 (298)
                      .+-++...      ..+. ......+.+++..       ++.|+.||..+++.+.++.......                
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            88777654      1121 1223455666654       4789999999999999887633211                


Q ss_pred             ----------------ceEEEEeCCCCeEEEEecCCCc-------------------eEEEEEcCCcceE-eec--ccc-
Q 022387          218 ----------------GLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTK-FIM--AHD-  258 (298)
Q Consensus       218 ----------------~~~~~s~~~d~~~la~sGs~dg-------------------~v~i~~~~~~~~~-~~~--~H~-  258 (298)
                                      ...++.++  +.++.+ +..++                   .|..+|.++.++. .+.  .|. 
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~--~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~  306 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAE--LNTMYV-GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN  306 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETT--TTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred             cccCceeEeCCCcccccceeEcCC--CCEEEE-ECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc
Confidence                            12344443  334433 44443                   4666887766543 332  232 


Q ss_pred             ------cceeEEEECCCC---CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          259 ------SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       259 ------~~V~~l~fspdg---~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                            ....-+....+|   +.++.++.+|. |.++|.++|+++.++
T Consensus       307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAK  353 (677)
T ss_dssp             SCCCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEE
T ss_pred             cccccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccc
Confidence                  223333444578   78999999999 999999999998653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.07  E-value=0.00072  Score=64.31  Aligned_cols=191  Identities=13%  Similarity=0.030  Sum_probs=118.7

Q ss_pred             CCCCEEEEEcC--CeEEEEEcCCCceEEEEeeecCCceEEEEE-e-cCCCEEEEEeCCCC-----------CCCCCCeEE
Q 022387           95 QDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEM-L-FRCNILALVGGGPD-----------PQYPLNKVM  159 (298)
Q Consensus        95 ~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-----------~~~~d~~v~  159 (298)
                      +||++|.+...  +.|.+.|+++.+.....++.-..+...+.+ . +++.++..++....           .-..++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            39998877654  337899999988665444421344555555 4 67777766641110           001246799


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEEC---------------------------------------CeEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE---------------------------------------QKIFV  198 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~---------------------------------------~~I~i  198 (298)
                      +.|..+.+.+.++......-.+.+++  +.++++..                                       +.|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            99999988877765432222222322  22222220                                       34788


Q ss_pred             EEcCC--CeE-EEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc------------eE-eeccccccee
Q 022387          199 YNFAD--LKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------TK-FIMAHDSRIA  262 (298)
Q Consensus       199 wd~~~--~~~-i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~------------~~-~~~~H~~~V~  262 (298)
                      .|..+  ++. +..+.....+. .+.+++  |+.++.+++-.+..|.++|+.+..            +. .+ .-....+
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~Ph-Gv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~  334 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPH-GCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL  334 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCC-CEEECT--TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred             EeCcccCCceeEEEEecCCCce-EEEEcC--CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence            88876  444 55666544433 445555  557777778889999999987542            11 11 1224589


Q ss_pred             EEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          263 CFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       263 ~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .++|+|||....+.-.|++ |-+||+.+
T Consensus       335 h~aF~~dG~aY~t~~ldsq-V~kwdi~~  361 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQ-VVKWNIED  361 (595)
T ss_dssp             EEEECTTSEEEEEETTTTE-EEEEEHHH
T ss_pred             eEEECCCCeEEEEEecCCc-EEEEEhhH
Confidence            9999999966667777888 99999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.06  E-value=0.00084  Score=65.55  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=44.9

Q ss_pred             CceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.|..||..+.++. .+..+ .++..-.+...|.+++.++.||. +++||.++|+++.++
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc-EEEEECCCCccceee
Confidence            478888999877654 54433 33444466677889999999999 999999999999876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.04  E-value=0.00039  Score=67.96  Aligned_cols=187  Identities=13%  Similarity=0.121  Sum_probs=110.7

Q ss_pred             CCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCc---------eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           97 HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGG---------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        97 g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      +..|++++. +.+.-+|..+++.+++.... ...         ............+++.+       .|+.|..+|.+++
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-------~dg~l~AlDa~TG  141 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQ-SDRHRAGEACCDAVNRGVAVWKGKVYVGV-------LDGRLEAIDAKTG  141 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCC-CCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCC-CCccccccccccCCCCccEEECCEEEEEc-------cCCEEEEEECCCC
Confidence            444555544 45778888888887776541 110         00000011234555544       4789999999999


Q ss_pred             cEEEEeecC-C-----ceE-EEEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccC-CCc--------------
Q 022387          167 RCIGELSFR-S-----EVR-SVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIA-NPK--------------  217 (298)
Q Consensus       167 ~~~~~~~~~-~-----~v~-~v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~-~~~--------------  217 (298)
                      +.+-++... .     .+. +-....+.+++..       ++.|+.||..+++.+.++.... .+.              
T Consensus       142 ~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  221 (689)
T 1yiq_A          142 QRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT  221 (689)
T ss_dssp             CEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred             CEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence            988766543 1     111 1122345555543       4689999999999998886421 110              


Q ss_pred             ----------------ceEEEEeCCCCeEEEEecCCCce-------------------EEEEEcCCcceE-eecc--cc-
Q 022387          218 ----------------GLCAVSQGVGSLVLVCPGLQKGQ-------------------VRVEHYASKRTK-FIMA--HD-  258 (298)
Q Consensus       218 ----------------~~~~~s~~~d~~~la~sGs~dg~-------------------v~i~~~~~~~~~-~~~~--H~-  258 (298)
                                      ...++.  ++..++.+ ++.++.                   |..+|.++.++. .+..  |. 
T Consensus       222 ~~g~~w~~~~~g~~~w~~~~~d--~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~  298 (689)
T 1yiq_A          222 WFGDAYVEQGGGGTAWDSFAYD--PELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA  298 (689)
T ss_dssp             CCSSTHHHHCEECCCCSCEEEE--TTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cCCceeeecCCCCccccceeEc--CCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence                            123444  33344443 666653                   667888876644 4432  32 


Q ss_pred             ------cceeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEE
Q 022387          259 ------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       259 ------~~V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                            .++.......+|+   .++.++.+|. ++++|.++|+++.
T Consensus       299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~  343 (689)
T 1yiq_A          299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLS  343 (689)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEE
T ss_pred             ccccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEec
Confidence                  1222223333665   8999999999 9999999999984

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.93  E-value=0.00052  Score=65.26  Aligned_cols=199  Identities=10%  Similarity=0.072  Sum_probs=127.8

Q ss_pred             CCeEEEEE-c-CCCCEEEEEcC------------------Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEE
Q 022387           86 PTLLHISF-N-QDHGCFAAGTD------------------HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL  144 (298)
Q Consensus        86 ~~V~~v~f-s-~dg~~lasgs~------------------~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (298)
                      .....+++ + |+++++.++++                  ++ +-+.|.++.+.......  .+....+.+++++..+++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V--gg~pd~~~~spdGk~~~v  211 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFS  211 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe--CCCccceEECCCCCEEEE
Confidence            46788898 5 99999998852                  23 55889999887777664  345566777788777766


Q ss_pred             EeCCCCCC-------------------------------CCCCeEEEEeCCC--CcE-EEEeecCCceEEEEEeCCe--E
Q 022387          145 VGGGPDPQ-------------------------------YPLNKVMIWDDHQ--SRC-IGELSFRSEVRSVKLRRDR--I  188 (298)
Q Consensus       145 ~~~~~~~~-------------------------------~~d~~v~iWD~~~--~~~-~~~~~~~~~v~~v~~~~~~--l  188 (298)
                      .+-.....                               ..-+.|.|.|..+  +.. +..+.......++.++++.  +
T Consensus       212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v  291 (595)
T 1fwx_A          212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHL  291 (595)
T ss_dssp             EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEE
T ss_pred             EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEE
Confidence            66332110                               0013588899888  555 6677766677788888753  4


Q ss_pred             EEEE--CCeEEEEEcCCCe------------EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC------
Q 022387          189 IVVL--EQKIFVYNFADLK------------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------  248 (298)
Q Consensus       189 ~v~~--~~~I~iwd~~~~~------------~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~------  248 (298)
                      +++.  +++|.++|+.+.+            .+.++....   +-..+.+++++...+ +-.-++.|.+|++..      
T Consensus       292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---gP~h~aF~~dG~aY~-t~~ldsqV~kwdi~~a~~~~~  367 (595)
T 1fwx_A          292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---GPLHTAFDGRGNAYT-SLFLDSQVVKWNIEDAIRAYA  367 (595)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---CEEEEEECTTSEEEE-EETTTTEEEEEEHHHHHHHHH
T ss_pred             EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---CcceEEECCCCeEEE-EEecCCcEEEEEhhHhhhhhc
Confidence            4443  3799999998653            333333322   233444555664333 468899999999865      


Q ss_pred             ----cc-eEeecccccc-----eeEEEECCCCCEEEEEeC---CCCEE-----------EEEECCCCc
Q 022387          249 ----KR-TKFIMAHDSR-----IACFALTQDGQLLATSST---KGTLV-----------RIFNTLDGT  292 (298)
Q Consensus       249 ----~~-~~~~~~H~~~-----V~~l~fspdg~~lAt~S~---Dgt~I-----------rIWd~~tg~  292 (298)
                          .+ +..+..|-.+     -..+.++|||++|.++..   |+  +           .|+|+..++
T Consensus       368 g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr--~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          368 GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR--FLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS--SCCCCSSCCEEEEEEECSSSS
T ss_pred             ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc--cccCCCCCCCcceEEEcCCCc
Confidence                22 2244444332     234467899999999832   43  4           789997655

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.89  E-value=0.0068  Score=52.80  Aligned_cols=197  Identities=11%  Similarity=0.054  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee------------------cCCceEEEEEecCCCEEEEEeCC
Q 022387           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE------------------RGGGIGVVEMLFRCNILALVGGG  148 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  148 (298)
                      ..+++|.++|+++.++.. +++..|+.+..+........                  ..+....+.+..+...+.++.. 
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~-   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC-   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence            346889999996667765 55777876654332111000                  0012344555542344555542 


Q ss_pred             CCCCCCCCeEEEEeCCCCcEEEEee-cC----CceEEEEEeC-C-eEEEEEC-------------------CeEEEEEcC
Q 022387          149 PDPQYPLNKVMIWDDHQSRCIGELS-FR----SEVRSVKLRR-D-RIIVVLE-------------------QKIFVYNFA  202 (298)
Q Consensus       149 ~~~~~~d~~v~iWD~~~~~~~~~~~-~~----~~v~~v~~~~-~-~l~v~~~-------------------~~I~iwd~~  202 (298)
                            .+.|..+|..++....... ..    .....+.+.+ + .+.++..                   +.|..||..
T Consensus       100 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A          100 ------YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             ------TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             ------CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence                  2448888876553211111 11    2356677776 4 4444431                   468888876


Q ss_pred             CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc---ceEeecccccceeEEEECCCCCEEEEEeC-
Q 022387          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST-  278 (298)
Q Consensus       203 ~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~-  278 (298)
                      +++..........+. -++++  +++..|.++-..++.|.+++....   ....+....+ ...|++.++|+++++... 
T Consensus       174 ~~~~~~~~~~~~~p~-gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          174 TKETTLLLKELHVPG-GAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             TTEEEEEEEEESCCC-EEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEeccCCccCc-ceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence            665432222222222 34444  444533333456678888877642   2222222223 788999999998888754 


Q ss_pred             ---------CCCEEEEEECCCCcEEEec
Q 022387          279 ---------KGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       279 ---------Dgt~IrIWd~~tg~~l~~~  297 (298)
                               .+. |.++|. .|+.+..|
T Consensus       250 ~~~~~~~~~~~~-v~~~d~-~G~~~~~~  275 (322)
T 2fp8_A          250 LDGNMHGRVDPK-GIKFDE-FGNILEVI  275 (322)
T ss_dssp             TTSSTTSCEEEE-EEEECT-TSCEEEEE
T ss_pred             ccccccCCCccE-EEEECC-CCCEEEEE
Confidence                     355 777775 46666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.85  E-value=0.0077  Score=59.42  Aligned_cols=193  Identities=11%  Similarity=0.141  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      |.++...++|.+.+....+|+..|+.++.+............+..+....++.+. +++       ..+.+.+||..+++
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt-------~~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW-VAT-------EGAGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE-EEE-------BSSCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE-EEE-------CCCCeEEEeCCCCe
Confidence            8888888888766644347888898776543221110012334444444444433 333       12348899988765


Q ss_pred             EEEEeec--------CCceEEEEEeC-CeEEEEECCeEEEEEcCCCeEEEEEeccC------CCcceEEEEeCCCCeEEE
Q 022387          168 CIGELSF--------RSEVRSVKLRR-DRIIVVLEQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       168 ~~~~~~~--------~~~v~~v~~~~-~~l~v~~~~~I~iwd~~~~~~i~~~~~~~------~~~~~~~~s~~~d~~~la  232 (298)
                      .......        ...|.++...+ ..+.+++.+.|.+||..+.+. ..+....      ....+.++..+.++.+.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi  325 (795)
T 4a2l_A          247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGGMWL  325 (795)
T ss_dssp             EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred             EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence            4332111        23588888764 567777777899999876654 3333211      112355777777777776


Q ss_pred             EecCCCceEEEEEcCCcceEeecc-------cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~~-------H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                        |+.++-|.+++........+..       ....|.+|+..++|.+.+ |..++. |..||..+++.
T Consensus       326 --gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~G-l~~~~~~~~~~  389 (795)
T 4a2l_A          326 --GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGG-LNLYNPITQRF  389 (795)
T ss_dssp             --EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSC-EEEECTTTCCE
T ss_pred             --EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCC-eEEEcCCCCcE
Confidence              6776777777765544333221       235699999999998776 556777 88999887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.78  E-value=0.025  Score=55.78  Aligned_cols=193  Identities=12%  Similarity=0.088  Sum_probs=117.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEe--------eecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD--------FERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ...|.++...++|.+.+...++|+..|+..+........        + ....+..+....+++.+-+++       .++
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~~d~~g~~lWigt-------~~~  427 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGI-GSNNIKAVYVDEKKSLVYIGT-------HAG  427 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CC-SCSCEEEEEEETTTTEEEEEE-------TTT
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCC-CCccEEEEEEcCCCCEEEEEe-------CcC
Confidence            357999999999986654444689899877654322111        1 023344444444555244444       235


Q ss_pred             eEEEEeCCCCcEEEEee-----cCCceEEEEEeC-CeEEEEECCeEEEEEcCCCeEEEEEecc-----CCCcceEEEEeC
Q 022387          157 KVMIWDDHQSRCIGELS-----FRSEVRSVKLRR-DRIIVVLEQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQG  225 (298)
Q Consensus       157 ~v~iWD~~~~~~~~~~~-----~~~~v~~v~~~~-~~l~v~~~~~I~iwd~~~~~~i~~~~~~-----~~~~~~~~~s~~  225 (298)
                      .|.++|..+++......     ....|.++...+ ..+.+++.+.+.+||..+++.. .+...     .....+.++..+
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEEC
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEE-EccccccccccCCceEEEEEEC
Confidence            69999998876543221     123678887765 5677777778999998776542 22211     011234566677


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcceEeec-------ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~~~~~-------~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .++.+.+  |+.+| |..++...... .+.       .+...|.+|...++|.+.++.. . . |..||..+++.
T Consensus       507 ~~g~lWi--gt~~G-l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-G-l~~~d~~~~~~  574 (795)
T 4a2l_A          507 SHKRLWI--GGEEG-LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-G-FYCFNEKDKQI  574 (795)
T ss_dssp             TTCCEEE--EESSC-EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-C-EEEEETTTTEE
T ss_pred             CCCCEEE--EeCCc-eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-C-ceeECCCCCcE
Confidence            7777776  34455 55555544433 221       2345799999999999777664 3 5 77899877643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.76  E-value=0.014  Score=49.25  Aligned_cols=185  Identities=4%  Similarity=-0.128  Sum_probs=103.4

Q ss_pred             CCEEEEEcCCeEEEEEcCCCceE-----EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387           97 HGCFAAGTDHGFRIYNCDPFREI-----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (298)
Q Consensus        97 g~~lasgs~~gi~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~  171 (298)
                      |.+|..+..+.|+.++++.....     ..... .......+.+......+.++..      ..+.|..+|...+.....
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~   73 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTI   73 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEEC------CCCEEEEEecCCCCcEEE
Confidence            34566555556777777654320     01111 1223456666666666666653      347899999876554333


Q ss_pred             eecC-CceEEEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCC--CceEEE
Q 022387          172 LSFR-SEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQ--KGQVRV  243 (298)
Q Consensus       172 ~~~~-~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~--dg~v~i  243 (298)
                      +... .....+++++  ..+.++.  .+.|.++++..... ..+.. ......-+++.++. +.++++ ...  .+.|..
T Consensus        74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~-g~lyv~-~~~~~~~~I~~  150 (267)
T 1npe_A           74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVR-GNLYWT-DWNRDNPKIET  150 (267)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTT-TEEEEE-ECCSSSCEEEE
T ss_pred             EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCC-CEEEEE-ECCCCCcEEEE
Confidence            3222 3567788875  4566665  36899999854322 22222 11112234444432 344442 332  467877


Q ss_pred             EEcCCcceEeec-ccccceeEEEECCCCCE-EEEEeCCCCEEEEEECCCCc
Q 022387          244 EHYASKRTKFIM-AHDSRIACFALTQDGQL-LATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       244 ~~~~~~~~~~~~-~H~~~V~~l~fspdg~~-lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      .+.+......+. ..-...+.|++++++.. +++-...+. |.++|+..+.
T Consensus       151 ~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~  200 (267)
T 1npe_A          151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPG  200 (267)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEE
T ss_pred             EecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCc
Confidence            777654433332 23346899999998654 455555666 9999987543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.66  E-value=0.0035  Score=60.95  Aligned_cols=184  Identities=15%  Similarity=0.197  Sum_probs=108.4

Q ss_pred             CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCce-----------EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGI-----------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ..|.+++. ..+.-+|..+++.+++.... ....           ....+  ....+++.+       .|+.|..+|..+
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~-------~dg~l~alD~~t  136 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPE-VAKVKARTSCCDAVNRGVAL--WGDKVYVGT-------LDGRLIALDAKT  136 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCC-CCGGGGGGCTTCSCCCCCEE--EBTEEEEEC-------TTSEEEEEETTT
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCC-CCccccccccccCCccceEE--ECCEEEEEc-------CCCEEEEEECCC
Confidence            34444444 45667888888887766541 1100           00111  234455544       468999999999


Q ss_pred             CcEEEEeecCC-----ceE-EEEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccC-CCc--------------
Q 022387          166 SRCIGELSFRS-----EVR-SVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIA-NPK--------------  217 (298)
Q Consensus       166 ~~~~~~~~~~~-----~v~-~v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~-~~~--------------  217 (298)
                      ++.+-++....     .+. .-....+.+++..       ++.|..+|..+++.+.++.... .+.              
T Consensus       137 G~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  216 (668)
T 1kv9_A          137 GKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT  216 (668)
T ss_dssp             CCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             CCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence            99887766521     111 1122345555543       3689999999999999887421 111              


Q ss_pred             ----------------ceEEEEeCCCCeEEEEecCCCce-------------------EEEEEcCCcceE-eec--ccc-
Q 022387          218 ----------------GLCAVSQGVGSLVLVCPGLQKGQ-------------------VRVEHYASKRTK-FIM--AHD-  258 (298)
Q Consensus       218 ----------------~~~~~s~~~d~~~la~sGs~dg~-------------------v~i~~~~~~~~~-~~~--~H~-  258 (298)
                                      ...++.  ++..++.+ ++.++.                   |.-+|.++.++. .+.  .|. 
T Consensus       217 ~~g~~~w~~~~gg~~w~~~a~d--~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~  293 (668)
T 1kv9_A          217 WQGDQYWKLGGGGTVWDSMAYD--PELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS  293 (668)
T ss_dssp             CCSSCHHHHCEECCCCSCEEEE--TTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred             CCccceeeeCCCCccccceEEc--CCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc
Confidence                            012333  33334433 555553                   666887776543 433  232 


Q ss_pred             ------cceeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEE
Q 022387          259 ------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       259 ------~~V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                            .++....+..+|+   +++.++.+|. +.++|..+|+++.
T Consensus       294 wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~  338 (668)
T 1kv9_A          294 WDFTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLIS  338 (668)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEE
T ss_pred             ccccCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEec
Confidence                  2333333334775   7899999999 9999999999884

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.65  E-value=0.002  Score=62.68  Aligned_cols=59  Identities=12%  Similarity=0.127  Sum_probs=43.3

Q ss_pred             CCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+|.|.-||..+.++. ....+ .++....+...|.++..++.|+. +++||.++|+++.++
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQF  495 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             ccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCccc-chhhhhhcChhheEe
Confidence            4588888998776654 43322 33444445556788888999999 999999999999776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.65  E-value=0.012  Score=55.98  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+|.|..+|..+.++. .+. +...+....+...+.++..++.||. |+.||.++|+++.+|
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGY-LKALDNKDGKELWNF  501 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEec-CCCCccceeEEECCCEEEEEcCCCe-EEEEECCCCCEEEEE
Confidence            3578888888766543 433 2223333333334556666899999 999999999999876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.64  E-value=0.0035  Score=56.41  Aligned_cols=94  Identities=9%  Similarity=-0.115  Sum_probs=65.0

Q ss_pred             eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC---CCCCCCeEEEEeCCCCcEEEEeecC--------
Q 022387          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD---PQYPLNKVMIWDDHQSRCIGELSFR--------  175 (298)
Q Consensus       107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~v~iWD~~~~~~~~~~~~~--------  175 (298)
                      .+.|+|.++.+.+.+...  ...- .+.+++++..++++.....   ..-.+++|.+||..+++.+.++...        
T Consensus        47 ~vsvID~~t~~v~~~i~v--G~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG--AFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE--CTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeC--CCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            667999999988777765  3333 6888899888887752100   0002588999999999999998754        


Q ss_pred             CceEEEEEeCC--eEEEEE---CCeEEE--EEcCC
Q 022387          176 SEVRSVKLRRD--RIIVVL---EQKIFV--YNFAD  203 (298)
Q Consensus       176 ~~v~~v~~~~~--~l~v~~---~~~I~i--wd~~~  203 (298)
                      .....+.++++  .++++.   ++.|.+  +|+.+
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            23456677764  677765   357888  88765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.53  E-value=0.017  Score=55.05  Aligned_cols=151  Identities=6%  Similarity=-0.075  Sum_probs=83.9

Q ss_pred             CCEEEEEcCC-eEEEEEcCCCceEEEEeeecCC----ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387           97 HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (298)
Q Consensus        97 g~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~  171 (298)
                      +..+++++.+ .+..+|..+++.+...... ..    .+...-... ...+++...+.+. -.++.|..+|.++++.+-+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~-~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVA-KDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEEECBCGGG-TCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEEE-CCEEEEEecCCcc-CCCCEEEEEECCCCcEEEE
Confidence            4566666654 4778899999888776641 10    111100111 2344443321100 0268899999999998877


Q ss_pred             eecCCce---------------------------------------EEEEEeC--CeEEEEEC-----------------
Q 022387          172 LSFRSEV---------------------------------------RSVKLRR--DRIIVVLE-----------------  193 (298)
Q Consensus       172 ~~~~~~v---------------------------------------~~v~~~~--~~l~v~~~-----------------  193 (298)
                      +......                                       ..+.+.+  +.+.+...                 
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            6543211                                       1123333  34545442                 


Q ss_pred             CeEEEEEcCCCeEEEEEeccCC------Cc-ceEEEEeCCCCe---EEEEecCCCceEEEEEcCCcce
Q 022387          194 QKIFVYNFADLKLLHQIETIAN------PK-GLCAVSQGVGSL---VLVCPGLQKGQVRVEHYASKRT  251 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~------~~-~~~~~s~~~d~~---~la~sGs~dg~v~i~~~~~~~~  251 (298)
                      +.|..+|..+++.+..++...+      .. ..+.+....++.   +++ .++.+|.+.+.|..+.++
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~-~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS-HIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE-EECTTSEEEEEETTTCCE
T ss_pred             EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE-EeCCCcEEEEEECCCCCE
Confidence            2699999999999998875321      11 112222112343   344 378899999988776553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.51  E-value=0.04  Score=47.80  Aligned_cols=200  Identities=11%  Similarity=-0.003  Sum_probs=106.9

Q ss_pred             CeEEEEEcC-CCCEEEEEcCCeEEEEEcCCCceEEEE-eee--cCCceEEEEEec-CCCEEEEEeCCCCC----------
Q 022387           87 TLLHISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRR-DFE--RGGGIGVVEMLF-RCNILALVGGGPDP----------  151 (298)
Q Consensus        87 ~V~~v~fs~-dg~~lasgs~~gi~vw~~~~~~~~~~~-~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~----------  151 (298)
                      .+.++++.+ +|+++++....++..++.+........ ...  .......+.+.. +++..+.-.+....          
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            578999997 777666656677777776643321111 110  011234455555 55544433221000          


Q ss_pred             CCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeC
Q 022387          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~  225 (298)
                      ....+.|..+|..+++.............++++++  .+.++.  .+.|.+|++....  ....+.....   .-.+..+
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d  237 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRN  237 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---EEEEEEC
T ss_pred             cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---CCCeEEC
Confidence            00236788889877664332222233456788875  366664  3799999986421  1122221111   2234455


Q ss_pred             CCCeEEEEecC---------CCceEEEEEcCCcceEeeccc----ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387          226 VGSLVLVCPGL---------QKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       226 ~d~~~la~sGs---------~dg~v~i~~~~~~~~~~~~~H----~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      +++.+.++...         ..+.|..++.+.+.+..+...    -..++++++ .+|+++++....+. |.++++...
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~-i~~~~~~~~  314 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS-VGILVYDKK  314 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE-EEEEEC---
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc-eEEEecccc
Confidence            56565553211         135666677665544444433    245778877 47788877777777 999997643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.48  E-value=0.0086  Score=57.88  Aligned_cols=201  Identities=10%  Similarity=0.033  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeeecCCceEE-EEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           88 LLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..++++..+|++++.|+.  ..+.+||..+.++.....+ ....... +....++..+++ +|..+....-+.+.+||..
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~-~~~R~~~s~~~~~dg~iyv~-GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFTI-GGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEEE-CCCCCSSSCCCCEEEEETT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCC-CccccccceEEecCCeEEEE-eCcccCCcccccceEeCCC
Confidence            345778899999999985  3478999887765433222 1222222 222335554444 4422111123679999998


Q ss_pred             CCcEEEEe-----ecC-----------CceEEEEEeCCeEEE-EECCeEEEEEcCCCeEEEEEeccCC-------CcceE
Q 022387          165 QSRCIGEL-----SFR-----------SEVRSVKLRRDRIIV-VLEQKIFVYNFADLKLLHQIETIAN-------PKGLC  220 (298)
Q Consensus       165 ~~~~~~~~-----~~~-----------~~v~~v~~~~~~l~v-~~~~~I~iwd~~~~~~i~~~~~~~~-------~~~~~  220 (298)
                      +++....-     ...           ..+..+.......+. .....+..||..+.+-.........       .....
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            87643320     000           111111111111111 1135788999876654333322211       11122


Q ss_pred             EEE-eCCCCeEEEEecCCCc-----------eEEEEEcCCcceEee---cccccc-eeEEEECCCCCEEEEEeCC-----
Q 022387          221 AVS-QGVGSLVLVCPGLQKG-----------QVRVEHYASKRTKFI---MAHDSR-IACFALTQDGQLLATSSTK-----  279 (298)
Q Consensus       221 ~~s-~~~d~~~la~sGs~dg-----------~v~i~~~~~~~~~~~---~~H~~~-V~~l~fspdg~~lAt~S~D-----  279 (298)
                      ++. +..++.++++ |+.++           .|.+||.....-..+   ..+... -.+++..|+|++++.|+.+     
T Consensus       403 av~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          403 AVMYDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             eEeccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            222 1234577776 54322           455666655443322   122222 3455677999999999865     


Q ss_pred             ------CCEEEEEECCCCc
Q 022387          280 ------GTLVRIFNTLDGT  292 (298)
Q Consensus       280 ------gt~IrIWd~~tg~  292 (298)
                            .. +.+||..+++
T Consensus       482 ~~~~~~~~-v~~ydp~t~~  499 (656)
T 1k3i_A          482 EDSTPVFT-PEIYVPEQDT  499 (656)
T ss_dssp             CCCSBCCC-CEEEEGGGTE
T ss_pred             CCCCcccc-eEEEcCCCCc
Confidence                  45 8999987764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.32  E-value=0.021  Score=54.65  Aligned_cols=139  Identities=16%  Similarity=0.209  Sum_probs=85.2

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCC-----ceEE-EEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccCCCc---
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK---  217 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~-----~v~~-v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~~~~---  217 (298)
                      .|+.|.-+|..+++.+-+.....     .+.+ -.+..+.+++..       ++.|+.+|..+++.+.++.......   
T Consensus       129 ~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~  208 (599)
T 1w6s_A          129 LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (599)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence            46889999999999877665432     2211 122345555544       4799999999999998887532110   


Q ss_pred             -----------------------------------ceEEEEeCCCCeEEEEecCCC----------------ceEEEEEc
Q 022387          218 -----------------------------------GLCAVSQGVGSLVLVCPGLQK----------------GQVRVEHY  246 (298)
Q Consensus       218 -----------------------------------~~~~~s~~~d~~~la~sGs~d----------------g~v~i~~~  246 (298)
                                                         ...++.... +.+++  |..+                +.|.-+|.
T Consensus       209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~--g~g~~~p~~~~~r~gd~~y~~sv~Ald~  285 (599)
T 1w6s_A          209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYF--GTGNPAPWNETMRPGDNKWTMTIFGRDA  285 (599)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEE--ECCCCSCSCGGGSCSCCTTSSEEEEEET
T ss_pred             cccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEE--eCCCCccccCcccCCCccccceEEEEeC
Confidence                                               012333322 23333  3333                35666777


Q ss_pred             CCcceE-ee--cccc--------cceeEEEEC-CCC---CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          247 ASKRTK-FI--MAHD--------SRIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       247 ~~~~~~-~~--~~H~--------~~V~~l~fs-pdg---~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ++.++. .+  ..|.        .++. +... .+|   +.++.++.+|. +.++|.++|+++.++
T Consensus       286 ~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          286 DTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSAN  349 (599)
T ss_dssp             TTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             CCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeecc
Confidence            766544 33  2332        1221 2332 578   57888999998 999999999998653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.077  Score=52.12  Aligned_cols=192  Identities=9%  Similarity=0.029  Sum_probs=115.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEe--eecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD--FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ...|.++...++|.+.+....+|+..++..+.+......  + ....+..+....++. +-+++       . +.|..+|
T Consensus       406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~-lwigt-------~-~Gl~~~~  475 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKK-IWIGT-------H-AGVFVID  475 (781)
T ss_dssp             CSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSE-EEEEE-------T-TEEEEEE
T ss_pred             CcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCC-EEEEE-------C-CceEEEe
Confidence            357999998888886664334788888876654321110  0 123344444333333 33333       2 4588999


Q ss_pred             CCCCcEEEEeec------CCceEEEEEeC-CeEEEEEC-CeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEE
Q 022387          163 DHQSRCIGELSF------RSEVRSVKLRR-DRIIVVLE-QKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       163 ~~~~~~~~~~~~------~~~v~~v~~~~-~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la  232 (298)
                      ..+++.......      ...|.++...+ ..+.+++. +.+..||..+.+ +..+....  ....+.++..+.++.+.+
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred             CCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEE
Confidence            887654332221      24678887765 46777775 678889876654 33443211  112355677777777776


Q ss_pred             EecCCCceEEEEEcCCcceEeeccc----ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          233 CPGLQKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~~~H----~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                        |+.+|.|..++.+.+....+...    ...|.++...++|.+.+++  ++. |..||..+++
T Consensus       555 --~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          555 --ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTG-ISCYITSKKC  613 (781)
T ss_dssp             --EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSC-EEEEETTTTE
T ss_pred             --EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCc-eEEEECCCCc
Confidence              35577757777766655544322    2368999999999988876  334 5677776554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.11  Score=51.13  Aligned_cols=193  Identities=9%  Similarity=0.022  Sum_probs=114.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEe--------------eecCCceEEEEEecCCCEEEEEeCCC
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRD--------------FERGGGIGVVEMLFRCNILALVGGGP  149 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (298)
                      ...|+++....+|.+.+ |+. +|+.+++..+........              + ....+..+....++++. +++   
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l-~~~~v~~i~~D~~g~lW-igt---  330 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL-SNASARYIFQDSFNNIW-IGT---  330 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSB-SSSCEEEEEECSSCCEE-EEE---
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC-CCCeEEEEEEeCCCCEE-EEe---
Confidence            35799999988887554 445 899899887654321111              1 12334444444444433 323   


Q ss_pred             CCCCCCCeEEEEeCCCCcEEEEe-------e---cCCceEEEEEeC-CeEEEEE-CCeEEEEEcCCCeEEEEEec--cCC
Q 022387          150 DPQYPLNKVMIWDDHQSRCIGEL-------S---FRSEVRSVKLRR-DRIIVVL-EQKIFVYNFADLKLLHQIET--IAN  215 (298)
Q Consensus       150 ~~~~~d~~v~iWD~~~~~~~~~~-------~---~~~~v~~v~~~~-~~l~v~~-~~~I~iwd~~~~~~i~~~~~--~~~  215 (298)
                          .++-|..++..++......       .   ....|.++...+ ..+.+++ ++.|.+||..+.+.. .+..  ...
T Consensus       331 ----~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~  405 (781)
T 3v9f_A          331 ----WGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI-YNKENRELL  405 (781)
T ss_dssp             ----BSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE-CC-----CC
T ss_pred             ----cCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE-EccCCCCCC
Confidence                2355888887765432211       0   123588888776 5677777 467999997654332 1111  111


Q ss_pred             CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       216 ~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ...+.++..+.++.+.+  |+.++-+..++..++....+.   .....|.+|...++|.+.+...  +. |.+||..+++
T Consensus       406 ~~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~G-l~~~~~~~~~  480 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF--GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AG-VFVIDLASKK  480 (781)
T ss_dssp             CSBEEEEEECTTSCEEE--EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TE-EEEEESSSSS
T ss_pred             CcceEEEEECCCCCEEE--EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--Cc-eEEEeCCCCe
Confidence            23455677776777776  566666777777666555443   2346799999999998777654  55 7889988765


Q ss_pred             E
Q 022387          293 L  293 (298)
Q Consensus       293 ~  293 (298)
                      .
T Consensus       481 ~  481 (781)
T 3v9f_A          481 V  481 (781)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.25  E-value=0.056  Score=51.73  Aligned_cols=148  Identities=7%  Similarity=-0.009  Sum_probs=82.6

Q ss_pred             EEEEcCCe-EEEEEcCCCceEEEEeeecCC----ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387          100 FAAGTDHG-FRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (298)
Q Consensus       100 lasgs~~g-i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~  174 (298)
                      |++++.++ +.-+|.++++.+...... ..    .+...-... ...+++.+++.+ .-.++.|+-+|.++++.+-++..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~-~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVV-KDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEE-CCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcC
Confidence            66666544 667888898887776541 10    111100111 233333332110 00268899999999998876654


Q ss_pred             CCceE---------------------------------------EEEE--eCCeEEEEEC-----------------CeE
Q 022387          175 RSEVR---------------------------------------SVKL--RRDRIIVVLE-----------------QKI  196 (298)
Q Consensus       175 ~~~v~---------------------------------------~v~~--~~~~l~v~~~-----------------~~I  196 (298)
                      .....                                       ...+  ..+.+.+.+.                 +.|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            32210                                       1122  2345555543                 389


Q ss_pred             EEEEcCCCeEEEEEeccCCCc-------ceEEEEe-CCCC---eEEEEecCCCceEEEEEcCCcce
Q 022387          197 FVYNFADLKLLHQIETIANPK-------GLCAVSQ-GVGS---LVLVCPGLQKGQVRVEHYASKRT  251 (298)
Q Consensus       197 ~iwd~~~~~~i~~~~~~~~~~-------~~~~~s~-~~d~---~~la~sGs~dg~v~i~~~~~~~~  251 (298)
                      ..+|..+++.+..++...+..       ..+.+.. +.++   .+++ .++.+|.+.+.|..+.++
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~-~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT-HPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE-EECTTSEEEEEETTTCCE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE-EECCCcEEEEEECCCCCE
Confidence            999999999999888643211       1122221 1234   3444 478999999988776553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.23  E-value=0.021  Score=56.17  Aligned_cols=193  Identities=9%  Similarity=0.028  Sum_probs=100.6

Q ss_pred             CeEEEEEc-CCCCEEEEEcC-C-----eEEEEEcCCC-ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           87 TLLHISFN-QDHGCFAAGTD-H-----GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        87 ~V~~v~fs-~dg~~lasgs~-~-----gi~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      .+...+|| |||++||-+.+ +     .+++++++++ +.+. ..+  ........|++++..++.+.....  .....|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~--~~~~~~~~WspDg~~l~y~~~d~~--~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV--SGTNGEIVWGPDHTSLFYVTKDET--LRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE--EEECSCCEECSSTTEEEEEEECTT--CCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc--cCceeeEEEecCCCEEEEEEECCC--CCCCEE
Confidence            57889999 99999986543 2     2778898887 5211 111  011234567888877777653210  012468


Q ss_pred             EEEeCCCCcE--EEEee--cCCceEEEEEeCC--eEEEEE----CCeEEEEEcCCCe-EE--EEEec-cCCCcceEEEEe
Q 022387          159 MIWDDHQSRC--IGELS--FRSEVRSVKLRRD--RIIVVL----EQKIFVYNFADLK-LL--HQIET-IANPKGLCAVSQ  224 (298)
Q Consensus       159 ~iWD~~~~~~--~~~~~--~~~~v~~v~~~~~--~l~v~~----~~~I~iwd~~~~~-~i--~~~~~-~~~~~~~~~~s~  224 (298)
                      .++++.+++.  ...+.  .......+.++++  .+++..    ...|.++|+.+.+ ..  +.+.. ...+.  ....+
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~--~s~~~  327 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR--YDVQM  327 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC--EEEEE
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce--EEEee
Confidence            8889887642  22222  1223456778775  344443    2478889987642 12  23322 11222  22221


Q ss_pred             CCCCeEEEEecCCC----ceEEEEEcCC-cceEe-eccccc--ceeEEEECCCCCEEEEEeCCCC-EEEEEEC
Q 022387          225 GVGSLVLVCPGLQK----GQVRVEHYAS-KRTKF-IMAHDS--RIACFALTQDGQLLATSSTKGT-LVRIFNT  288 (298)
Q Consensus       225 ~~d~~~la~sGs~d----g~v~i~~~~~-~~~~~-~~~H~~--~V~~l~fspdg~~lAt~S~Dgt-~IrIWd~  288 (298)
                      ..++.+++. ...+    ..|..++... ..... +..|..  .+..+++. .+.++++...|+. .|.++|+
T Consensus       328 ~~g~~l~~~-t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HGTSHLVIL-TNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ETTTEEEEE-ECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeCCEEEEE-eCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            112234433 3333    3555566653 22233 444444  45566665 3456667777775 1444554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.16  E-value=0.11  Score=49.51  Aligned_cols=190  Identities=11%  Similarity=0.115  Sum_probs=107.8

Q ss_pred             CCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCc-e--------EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG-I--------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        96 dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      +|..++++..+++.-+|.++++.+++.... ... .        ....  .....+++.+       .++.|.-+|..++
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~-~~~~~~~~~~~~~~g~a--~~~~~v~~~t-------~dg~l~AlD~~TG  137 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHR-LPDDIRPCCDVVNRGAA--IYGDKVFFGT-------LDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECC-CCTTCCCSSCSCCCCCE--EETTEEEEEE-------TTTEEEEEESSSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCC-CCcccccccccCCCccE--EECCEEEEEe-------CCCEEEEEECCCC
Confidence            455444444466777888888887777642 111 0        0011  1234455554       4688999999999


Q ss_pred             cEEEEeecCC-----ceE-EEEEeCC------eEEEEE-------CCeEEEEEcCCCeEEEEEeccCCCc----------
Q 022387          167 RCIGELSFRS-----EVR-SVKLRRD------RIIVVL-------EQKIFVYNFADLKLLHQIETIANPK----------  217 (298)
Q Consensus       167 ~~~~~~~~~~-----~v~-~v~~~~~------~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~~~~----------  217 (298)
                      +.+-+.....     .+. .-....+      .+++..       ++.|..+|..+++.+.+.......+          
T Consensus       138 ~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~  217 (582)
T 1flg_A          138 KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTV  217 (582)
T ss_dssp             CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEE
T ss_pred             CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccc
Confidence            9877665432     111 1111223      444433       4789999999999888765321000          


Q ss_pred             -------------------------------ceEEEEeCCCCeEEEEecC-----------C-------C----ceEEEE
Q 022387          218 -------------------------------GLCAVSQGVGSLVLVCPGL-----------Q-------K----GQVRVE  244 (298)
Q Consensus       218 -------------------------------~~~~~s~~~d~~~la~sGs-----------~-------d----g~v~i~  244 (298)
                                                     ...++.+.. +.+++.++.           .       |    +.|.-+
T Consensus       218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~Al  296 (582)
T 1flg_A          218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGV  296 (582)
T ss_dssp             SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEE
T ss_pred             ccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEE
Confidence                                           112333332 233332231           1       2    567778


Q ss_pred             EcCCcceE-ee--ccccc-------ceeEEEEC-CCCC---EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          245 HYASKRTK-FI--MAHDS-------RIACFALT-QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       245 ~~~~~~~~-~~--~~H~~-------~V~~l~fs-pdg~---~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.++.++. .+  ..|..       ...-+... .+|+   +++.++.+|. ++++|.++|+.+.++
T Consensus       297 D~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          297 DPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAF  362 (582)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             eCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccc
Confidence            88776654 33  23421       11112222 5784   7889999999 999999999998654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.15  E-value=0.064  Score=51.12  Aligned_cols=58  Identities=21%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             CceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|.|.-||..+.++. ....+ .++..-.....|.++..++.||. ++.||.++|+++.+|
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKF  523 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCc-EEEEECCCCCEEEEe
Confidence            577888888776543 43322 22222112224667777999999 999999999999876

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.02  E-value=0.16  Score=45.06  Aligned_cols=184  Identities=13%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecC----CCE--EEEEeCCCCCCCC--CCeEEEEeC--CCCcE
Q 022387           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNI--LALVGGGPDPQYP--LNKVMIWDD--HQSRC  168 (298)
Q Consensus        99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~--d~~v~iWD~--~~~~~  168 (298)
                      +|++.-..|+.|||+ .++.+....   .+...-+.+.+.    +..  +++++..     .  +++|.+|++  .++. 
T Consensus        43 ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R-----~~~~n~l~vf~iDp~~~~-  112 (355)
T 3amr_A           43 LITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNR-----SEGKNTIEIYAIDGKNGT-  112 (355)
T ss_dssp             EEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEEC-----STTCCEEEEEEECTTTCC-
T ss_pred             EEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCC-----CCCCCeEEEEEECCCCCc-
Confidence            344444478999999 555544443   355555555431    211  4555532     3  588999966  4443 


Q ss_pred             EEEeec-------C-CceEEEEE--eC--Ce-EEEEE--CCeEEEEEc-------CCCeEEEEEeccCCCcceEEEEeCC
Q 022387          169 IGELSF-------R-SEVRSVKL--RR--DR-IIVVL--EQKIFVYNF-------ADLKLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       169 ~~~~~~-------~-~~v~~v~~--~~--~~-l~v~~--~~~I~iwd~-------~~~~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      +..+..       . ..+..+++  ++  .. .+.+.  ++.+..|++       .+.+++++|..... ...|.+... 
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq-~EgcvvDd~-  190 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ-TEGMAADDE-  190 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC-EEEEEEETT-
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC-cceEEEcCC-
Confidence            444421       1 34555665  43  22 23333  378888888       24467788876543 445555433 


Q ss_pred             CCeEEEEecCCCceEEEEEcCC-----cceE-ee-cccc-cceeEEEE--CCCCC-EEEEEe-CCCCEEEEEECC-CCcE
Q 022387          227 GSLVLVCPGLQKGQVRVEHYAS-----KRTK-FI-MAHD-SRIACFAL--TQDGQ-LLATSS-TKGTLVRIFNTL-DGTL  293 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~-----~~~~-~~-~~H~-~~V~~l~f--spdg~-~lAt~S-~Dgt~IrIWd~~-tg~~  293 (298)
                      .+.+++  +..+.-|..++..-     ..+. .+ .+|- ..+..|++  .++|+ ||+.+| .+++ ..|||.+ +.+.
T Consensus       191 ~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s-~~Vydr~~~~~~  267 (355)
T 3amr_A          191 YGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS-YAIYDRQGKNKY  267 (355)
T ss_dssp             TTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESSTTCCE
T ss_pred             CCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE-EEEEECCCCCcE
Confidence            234444  56664454455431     1222 22 1332 46888988  56665 555555 4556 9999997 6666


Q ss_pred             EEec
Q 022387          294 LQEG  297 (298)
Q Consensus       294 l~~~  297 (298)
                      +..|
T Consensus       268 vg~f  271 (355)
T 3amr_A          268 VADF  271 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.91  E-value=0.31  Score=50.25  Aligned_cols=176  Identities=9%  Similarity=0.062  Sum_probs=103.9

Q ss_pred             EEEEEcCCCceEEEEeeecCCceEEEE-EecCC---CEEEEEeC----CCCCCCCCCeEEEEeCCCCc--EEEEeecCCc
Q 022387          108 FRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC---NILALVGG----GPDPQYPLNKVMIWDDHQSR--CIGELSFRSE  177 (298)
Q Consensus       108 i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~d~~v~iWD~~~~~--~~~~~~~~~~  177 (298)
                      +++.|-.+.+.+...++..+..+.+++ +.+..   .+++++++    +++ ....|.|.++++..++  .+.+.+..+.
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~-~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEA-EPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCS-SCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCC-CCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            456665556655555553222223332 33432   44554442    211 1245889999986443  3444556678


Q ss_pred             eEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEee
Q 022387          178 VRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFI  254 (298)
Q Consensus       178 v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~~  254 (298)
                      |.+++--..+++++..++|++|++...+.++ ... +...+....+...+  .++++ |+.-..|.+  |+....++..+
T Consensus       888 v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~--~~I~v-gD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          888 VYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKG--DFILV-GDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             EEEEEEETTEEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEET--TEEEE-EESSBCEEEEEEETTTTEEEEE
T ss_pred             CEEEeeeCCEEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccC--CEEEE-EEhhheEEEEEEEcCCCeEEEE
Confidence            9998865668888999999999997655444 221 11112233443332  45554 777777777  66555555554


Q ss_pred             cc--cccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          255 MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       255 ~~--H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..  +...|++++|--+. .++.+..+|. |.|.....
T Consensus       964 a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~vl~~~~  999 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDDD-NFLGAENAFN-LFVCQKDS  999 (1158)
T ss_dssp             EECCSCBCEEEEEEEETT-EEEEEETTSE-EEEEEECT
T ss_pred             EeecccccEEEEEEEccC-cEEEEcCCCc-EEEEecCC
Confidence            43  34568888886544 6777888998 98887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.88  E-value=0.18  Score=43.34  Aligned_cols=195  Identities=10%  Similarity=0.046  Sum_probs=108.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .....++|+++|+++++... +.|..|+.+.. .......  .+....+.+..++++++ +..+.    ....|..+|..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~--~~~p~gia~~~dG~l~v-ad~~~----~~~~v~~~d~~  103 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV--EGKVSGLAFTSNGDLVA-TGWNA----DSIPVVSLVKS  103 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC--SSEEEEEEECTTSCEEE-EEECT----TSCEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC--CCCceeEEEcCCCcEEE-EeccC----CcceEEEEcCC
Confidence            46778999999997777655 55667776543 2222332  34556666777776443 33211    11246667777


Q ss_pred             CCcEEEEeecCC--ceEEEEEe-CCeEEEEE--CCeEEEEEcCCCeE-EEEEec-------cCCCcceEEEEeCCCCeEE
Q 022387          165 QSRCIGELSFRS--EVRSVKLR-RDRIIVVL--EQKIFVYNFADLKL-LHQIET-------IANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       165 ~~~~~~~~~~~~--~v~~v~~~-~~~l~v~~--~~~I~iwd~~~~~~-i~~~~~-------~~~~~~~~~~s~~~d~~~l  231 (298)
                      +++.........  ....++.. ...++++.  .+.|.++|....+. +.....       .........+++++  ..|
T Consensus       104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg--~~l  181 (306)
T 2p4o_A          104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFL  181 (306)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEE
T ss_pred             CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC--CEE
Confidence            776543332211  12223322 33344443  47888888765421 211111       01111222345554  333


Q ss_pred             EEecCCCceEEEEEcCC-cce---EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          232 VCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~-~~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .++-...+.|..++... ..+   ..+. .......|+++++|+++++....+. |.++|.. |+.
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~  244 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RST  244 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCE
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCE
Confidence            33467778888888764 221   1111 1245788999999999888887888 9999965 665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.88  E-value=0.23  Score=44.52  Aligned_cols=199  Identities=9%  Similarity=-0.050  Sum_probs=109.8

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      .....++|.+.+..|. +-.. +.|..++.+.......... .......+.+.+....+.++..      ..+.|.+.+.
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~lY~~d~------~~~~I~~~~~  188 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDS------GTSRIEVANL  188 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-SCSCCCCEEEETTTTEEEEEET------TTTEEEECBT
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-CCCCccEEEEEeCCCeEEEEcC------CCCeEEEEeC
Confidence            3678899997655544 4434 4466777765543222211 1122334555555555555543      2467888887


Q ss_pred             CCCcEEEEeec-CCceEEEEEeC--CeEEEEEC---CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecC
Q 022387          164 HQSRCIGELSF-RSEVRSVKLRR--DRIIVVLE---QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       164 ~~~~~~~~~~~-~~~v~~v~~~~--~~l~v~~~---~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ........+.. ......+++++  ..++++..   +.|..+++..... ..+. .....-..++++++....++  +-+
T Consensus       189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~--aD~  265 (386)
T 3v65_B          189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYW--VDA  265 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEE--EET
T ss_pred             CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEE--EEC
Confidence            65433222222 23456777774  45555542   5788887753322 2222 22222234566654433333  356


Q ss_pred             CCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          237 QKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ..+.|...++...... .+.........|++ ..+.++.+-...+. |..+|..+|+.+++
T Consensus       266 ~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~  324 (386)
T 3v65_B          266 KHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEI  324 (386)
T ss_dssp             TTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEE
T ss_pred             CCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe-EEEEECCCCcceEE
Confidence            6778888887754433 33333456788888 45567777766777 88999777765443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.83  E-value=0.2  Score=43.03  Aligned_cols=181  Identities=9%  Similarity=-0.114  Sum_probs=91.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Ce--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..+.++++.+||+++++... ++  +..++..+.+...............+... ....+.++..      ..+.|.++|
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~------~~g~i~~~d  144 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADS------YRGAIWLID  144 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEET------TTTEEEEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEEC------CCCeEEEEe
Confidence            36889999999997666543 44  44455555544322221001111122222 2333333321      247788888


Q ss_pred             CCCCcE-EEEee-------c-C--CceEEEEEeCCeEEEEEC--CeEEEEEcCC-CeE--EEEEeccCCCcceEEEEeCC
Q 022387          163 DHQSRC-IGELS-------F-R--SEVRSVKLRRDRIIVVLE--QKIFVYNFAD-LKL--LHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       163 ~~~~~~-~~~~~-------~-~--~~v~~v~~~~~~l~v~~~--~~I~iwd~~~-~~~--i~~~~~~~~~~~~~~~s~~~  226 (298)
                      ..++.. +....       . .  .....+....+.+.++..  +.|..|++.. ++.  ...+.....+ .-+++.  +
T Consensus       145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-~gi~vd--~  221 (306)
T 2p4o_A          145 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-DDFAFD--V  221 (306)
T ss_dssp             TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-SSEEEB--T
T ss_pred             CCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-CCeEEC--C
Confidence            765421 11100       0 0  123344444556777653  7999999864 221  1222221222 234444  4


Q ss_pred             CCeEEEEecCCCceEEEEEcCCcceE--eecccccceeEEEEC---CCCCEEEEEe
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALT---QDGQLLATSS  277 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fs---pdg~~lAt~S  277 (298)
                      ++.++++ ....+.|.+++...+...  .+......+++++|.   ||++.|..++
T Consensus       222 dG~l~va-~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          222 EGNLYGA-THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             TCCEEEE-CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCEEEE-eCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            4566553 555678888876643322  233233568999999   8875544443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.77  E-value=0.22  Score=43.80  Aligned_cols=149  Identities=8%  Similarity=0.102  Sum_probs=93.1

Q ss_pred             EEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC---------ceEEEEE---eC-CeEEEEEC------
Q 022387          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS---------EVRSVKL---RR-DRIIVVLE------  193 (298)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~---------~v~~v~~---~~-~~l~v~~~------  193 (298)
                      ..|......+.+++      +..++|..||...+..... .+..         .+..+.+   .+ .+++++.+      
T Consensus        18 ~~wd~~~g~~~vs~------l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           18 TIYDRTRQVFYQSN------LYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             EEEETTTTEEEEEE------TTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCcCCCCEEEEEe------ccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            34444445555555      2458899999876543322 2221         3577888   44 45655432      


Q ss_pred             ---------CeEEEEEcC---CCeEEEEEecc----C-------CCcceEEEEeCCCCeEEEEecCCC-ceEEEEEcCCc
Q 022387          194 ---------QKIFVYNFA---DLKLLHQIETI----A-------NPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASK  249 (298)
Q Consensus       194 ---------~~I~iwd~~---~~~~i~~~~~~----~-------~~~~~~~~s~~~d~~~la~sGs~d-g~v~i~~~~~~  249 (298)
                               ..|..||+.   +++.+....-.    .       .......+..++++...++ ++.. +.|...+-..+
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCCCC
Confidence                     579999998   77776655421    1       2234667888888887773 6666 66555555544


Q ss_pred             ceEeec-----c-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          250 RTKFIM-----A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       250 ~~~~~~-----~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ....+.     . .....+.|+++|||++|+....+|. +..||+.+
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSK  215 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCC
Confidence            333221     1 1223789999999988888866888 88889774

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.66  E-value=0.38  Score=43.91  Aligned_cols=198  Identities=10%  Similarity=0.034  Sum_probs=103.9

Q ss_pred             CeEEEEEcCC---CCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           87 TLLHISFNQD---HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        87 ~V~~v~fs~d---g~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ....++|+|+   |.++++-....|+.++.+.........  .......+.+..+++ +.++..+..  .....+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~--~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSS--DTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSC--TTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCC--cccceEEEEEC
Confidence            4568999985   554444333567788876655432222  134466777888887 444442110  00122333333


Q ss_pred             CCCcE-EEEeecCCceEEEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEec-cCCC-cceEEEEeCCCCeEEEEecC
Q 022387          164 HQSRC-IGELSFRSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIET-IANP-KGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       164 ~~~~~-~~~~~~~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~-~~~~-~~~~~~s~~~d~~~la~sGs  236 (298)
                      ..+.. ...+........+++++  ..+.++.  .+.|+.+|..+++....+.. ...+ ...+++++  ++..|.++-.
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp--dG~~LYvad~  292 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP--TGDWAYIIYN  292 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT--TSSEEEEEET
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC--CCCEEEEEeC
Confidence            22211 01111122334566665  3455543  36899998876665333322 1111 11245544  4453333356


Q ss_pred             CCceEEEEEcCC--cce---Eeeccc---------------ccceeEEEE---------CCCCCEEEEEeCCCCEEEEEE
Q 022387          237 QKGQVRVEHYAS--KRT---KFIMAH---------------DSRIACFAL---------TQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       237 ~dg~v~i~~~~~--~~~---~~~~~H---------------~~~V~~l~f---------spdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .++.|...++..  +.+   .++.+.               -.....|+|         .++|.++++-...+. |++++
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~  371 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLT  371 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEEC
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEEC
Confidence            677888866542  211   122221               124678999         788888888777777 99998


Q ss_pred             CCCCcE
Q 022387          288 TLDGTL  293 (298)
Q Consensus       288 ~~tg~~  293 (298)
                      . +|..
T Consensus       372 ~-~G~v  376 (433)
T 4hw6_A          372 P-EGRV  376 (433)
T ss_dssp             T-TSEE
T ss_pred             C-CCCE
Confidence            4 6643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.56  E-value=0.016  Score=60.25  Aligned_cols=173  Identities=13%  Similarity=0.179  Sum_probs=118.2

Q ss_pred             CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEE-e
Q 022387          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL-R  184 (298)
Q Consensus       106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~-~  184 (298)
                      ..+.|.|+.......++..  ..+  ..-+.+....+|+-.|        +++.|+|+++.+.+..+.+..+|.-+.| +
T Consensus        48 ~~vvIidl~~~~~~~rrpi--~Ad--sAIMnP~~~iiALrag--------~~lQiFnl~~k~klks~~~~e~VvfWkWis  115 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPI--SAD--SAIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (1630)
T ss_pred             ceEEEEECCCCCCcccccc--cch--hhccCCCcceEEEecC--------CeEEEeehHHhhhhcccccCCCceEEEecC
Confidence            4578889887666555543  222  2334566667777552        6799999999999999999889988887 6


Q ss_pred             CCeEEEEECCeEEEEEcC-CCeEEEEEeccCC--CcceEEEEeCCCCeEEEEec------CCCceEEEEEcCCcceEeec
Q 022387          185 RDRIIVVLEQKIFVYNFA-DLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPG------LQKGQVRVEHYASKRTKFIM  255 (298)
Q Consensus       185 ~~~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sG------s~dg~v~i~~~~~~~~~~~~  255 (298)
                      ++.+.++++..|..|++. +..+++.|..|..  ...++.+..+++..+++..|      ...|.+.++..+.+....+.
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie  195 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh
Confidence            788888999999999996 3455555555532  23456667777777777654      35789999998887777788


Q ss_pred             ccccceeEEEEC--C-CCCEEEEEeC--CCCEEEEEECCC
Q 022387          256 AHDSRIACFALT--Q-DGQLLATSST--KGTLVRIFNTLD  290 (298)
Q Consensus       256 ~H~~~V~~l~fs--p-dg~~lAt~S~--Dgt~IrIWd~~t  290 (298)
                      ||.+.-..+...  + ..++|+-+..  .|..++|-++..
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence            887766555553  1 2334443322  222388888754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.53  E-value=0.38  Score=42.39  Aligned_cols=198  Identities=9%  Similarity=-0.052  Sum_probs=109.5

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+..++|++.+..|. +-.. +.|..++.+.......... .......+.+.+....+..+..      ..+.|.+.+.
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~ly~~d~------~~~~I~~~~~  145 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDS------GTSRIEVANL  145 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEEEET
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-CCCCccEEEEecCCCeEEEEcC------CCCeEEEEcC
Confidence            3578999997665555 4434 4566777766543222211 1123344556655555555543      2477888888


Q ss_pred             CCCcEEEEeec-CCceEEEEEeC--CeEEEEEC---CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecC
Q 022387          164 HQSRCIGELSF-RSEVRSVKLRR--DRIIVVLE---QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       164 ~~~~~~~~~~~-~~~v~~v~~~~--~~l~v~~~---~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ........+.. ......+++++  ..+.++..   +.|..+++.... ...+. .....-..++++++.. .+++ +-.
T Consensus       146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~-~lY~-aD~  222 (349)
T 3v64_C          146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGR-RMYW-VDA  222 (349)
T ss_dssp             TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTT-EEEE-EET
T ss_pred             CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCC-EEEE-EEC
Confidence            65433222222 23456777875  34555542   567777765322 22221 1111123345554433 3333 356


Q ss_pred             CCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          237 QKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      ..+.|...++...... .+.........|++ .++.++.+-...+. |..++..+|+.++
T Consensus       223 ~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~  280 (349)
T 3v64_C          223 KHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQE  280 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCE
T ss_pred             CCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCe-EEEEEccCCCccE
Confidence            6778888887765433 23333456788888 45666677666777 8888877776544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.46  E-value=0.5  Score=43.00  Aligned_cols=198  Identities=9%  Similarity=0.052  Sum_probs=103.1

Q ss_pred             CeEEEEEcC-CCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~-dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ....++|+| ++..|.+... +.|+.++.+.........  .......+++..+++.+.++..+...  ....+.+.+. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNN--DRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeC-
Confidence            457889998 3444544443 557788887655433222  24456777888888866666532110  1123333443 


Q ss_pred             CCcEE--EEeecCCceEEEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEeccC-CCcceEEEEeCCCCeEEEEecCC
Q 022387          165 QSRCI--GELSFRSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       165 ~~~~~--~~~~~~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~-~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      .+...  ..+........+++++  ..+.++.  .+.|..++..+........... .....+++  ++++.+|.++-..
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~--~pdG~~lyv~d~~  290 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF--HPSGNYAYIVVVN  290 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE--CTTSSEEEEEETT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE--cCCCCEEEEEECC
Confidence            22211  2222223455667776  3455554  3789999987665422222211 11223444  4455533333567


Q ss_pred             CceEEEEEcCC--cce---Eeeccc---------------cccee-EEEEC--------CCCCEEEEEeCCCCEEEEEEC
Q 022387          238 KGQVRVEHYAS--KRT---KFIMAH---------------DSRIA-CFALT--------QDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       238 dg~v~i~~~~~--~~~---~~~~~H---------------~~~V~-~l~fs--------pdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      ++.|..++...  +.+   .++.+.               -.... .++..        ++|.++++=...+. |+.++ 
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-  368 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-  368 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-
Confidence            77888866542  211   122111               11233 45553        45777777666666 88888 


Q ss_pred             CCCcE
Q 022387          289 LDGTL  293 (298)
Q Consensus       289 ~tg~~  293 (298)
                      .+|+.
T Consensus       369 ~~G~v  373 (430)
T 3tc9_A          369 PQGRV  373 (430)
T ss_dssp             TTSEE
T ss_pred             CCCcE
Confidence            55644

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.40  E-value=0.37  Score=40.78  Aligned_cols=193  Identities=7%  Similarity=0.049  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCCCCEEEE-EcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFAA-GTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~las-gs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+..++|+|++..|.+ ...++ |...|.+ ++.+....+....+...+++..++ .++++..      .++.+.++++
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E------~~~~l~~~~v   98 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDE------RDYAIYVISL   98 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEET------TTTEEEEEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEEC------CCCcEEEEEc
Confidence            37999999998775554 44444 4455555 444444444212456666666444 4555543      2477888887


Q ss_pred             CCCcE---EEEeec-------CCceEEEEEeCC--eEEEEEC-C--eEEEEEc-CCCeEEEEEec-------cCCCcceE
Q 022387          164 HQSRC---IGELSF-------RSEVRSVKLRRD--RIIVVLE-Q--KIFVYNF-ADLKLLHQIET-------IANPKGLC  220 (298)
Q Consensus       164 ~~~~~---~~~~~~-------~~~v~~v~~~~~--~l~v~~~-~--~I~iwd~-~~~~~i~~~~~-------~~~~~~~~  220 (298)
                      .....   +....+       +...-.+++++.  .+.++.+ +  .|..|+- ...+.+..+..       +......+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   233322       113467888764  6777654 3  4455541 11111122211       11234566


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCCcceE--eec-ccc------cceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIM-AHD------SRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~-~H~------~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ++.+.. +.+++. ......+.+.|.+.+...  .+. +..      ..-..|+|.++|+++++ |+..- +.+|.-..
T Consensus       179 ~~dp~t-g~lliL-S~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~-~y~f~~~~  253 (255)
T 3qqz_A          179 EFNQQK-NTLLVL-SHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR-FYRFTPQS  253 (255)
T ss_dssp             EEETTT-TEEEEE-ETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE-EEEEEC--
T ss_pred             EEcCCC-CeEEEE-ECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce-EEEEEecC
Confidence            776654 355554 466677777888776433  333 221      25789999999997777 66654 77776443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.36  E-value=0.58  Score=42.60  Aligned_cols=196  Identities=8%  Similarity=0.013  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-C----eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~----gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ......|+|+++|++|.++.. +    ...+|............+........+.+.+....+.++..      ..+.|.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~------~~~~V~  251 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSW------NAGQVF  251 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEET------TTTEEE
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEEC------CCCEEE
Confidence            346889999999995554432 1    12233222221110011100122334445553334444442      347899


Q ss_pred             EEeCCCCcEEEEeec--CCceEEEEEeCC--eEEEEE--CCeEEEEEcCC--CeE--EEEEecc----------------
Q 022387          160 IWDDHQSRCIGELSF--RSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD--LKL--LHQIETI----------------  213 (298)
Q Consensus       160 iWD~~~~~~~~~~~~--~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~--~~~--i~~~~~~----------------  213 (298)
                      .+|...+........  ......++++++  .+.++.  .+.|..++...  .+.  +..+...                
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~  331 (430)
T 3tc9_A          252 RYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM  331 (430)
T ss_dssp             EEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred             EEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence            999887654222222  224567888875  366664  36888887642  222  2233221                


Q ss_pred             CCCcceEEEEe------CCCCeEEEEecCCCceEEEEEcCCcceEeeccc------------------ccceeEEEECC-
Q 022387          214 ANPKGLCAVSQ------GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH------------------DSRIACFALTQ-  268 (298)
Q Consensus       214 ~~~~~~~~~s~------~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H------------------~~~V~~l~fsp-  268 (298)
                      ..|...+++..      +.++.++++ -..+..|+..+.+ ..+.++.+.                  -...+.|+++| 
T Consensus       332 ~~P~~gv~v~~~~y~~~D~~g~lyva-D~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  409 (430)
T 3tc9_A          332 HAPRQGTFVKNPAYKGSSDEYDFYFC-DRENHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE  409 (430)
T ss_dssp             SSEEEEEEEECGGGTTSSCCEEEEEE-EGGGTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred             CCCcceEEEccccccccCCCCeEEEE-ECCCcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence            01111233322      234455543 4455666666633 333333221                  12588999999 


Q ss_pred             CCCEEEEEeCCCCEEEEEECC
Q 022387          269 DGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|.++++-..... ||.++++
T Consensus       410 ~g~lyVaD~~n~r-Ir~i~~e  429 (430)
T 3tc9_A          410 RECFFIGDRENRR-IRKIGYE  429 (430)
T ss_dssp             TTEEEEEEGGGTE-EEEEEEC
T ss_pred             CCEEEEEECCCCe-EEEEccC
Confidence            5777777666666 8888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.23  E-value=0.52  Score=40.79  Aligned_cols=181  Identities=7%  Similarity=-0.087  Sum_probs=101.1

Q ss_pred             EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC----CcEEEEeec
Q 022387           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELSF  174 (298)
Q Consensus        99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~----~~~~~~~~~  174 (298)
                      +|+.+..+.|+..+++.........  .......+.+....+.+..+..      ..+.|..+|...    ......+..
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcccEEEEeC
Confidence            5666667778888888765433322  1345566677766666666653      347899999875    221212221


Q ss_pred             -CCceEEEEEe--CCeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC-ceEEEEEcCC
Q 022387          175 -RSEVRSVKLR--RDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS  248 (298)
Q Consensus       175 -~~~v~~v~~~--~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d-g~v~i~~~~~  248 (298)
                       ......+++.  ...+.++.  .+.|.++++........+.........+++.+.. +.++. +.... +.|...+.+.
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~-~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYW-TDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEE-EECSSSCEEEEEETTS
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC-CEEEE-EccCCCCeEEEEcCCC
Confidence             1234556665  45666654  3789999986443322222221222334444432 34444 23333 6777777765


Q ss_pred             cceEee-cccccceeEEEECCCCCEE-EEEeCCCCEEEEEECCC
Q 022387          249 KRTKFI-MAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       249 ~~~~~~-~~H~~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~t  290 (298)
                      .....+ ...-...+.|+|++++..| .+-+..+. |..+|+..
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg  195 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG  195 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCC
Confidence            544433 2233568899999876544 44455566 99999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.22  E-value=0.8  Score=44.82  Aligned_cols=197  Identities=10%  Similarity=0.024  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCEEEEEcCC------eEEEEEcCCCce--EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           89 LHISFNQDHGCFAAGTDH------GFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~------gi~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..++|+|||+.|+....+      .+.++++.+...  ..........-.....+++++..+++.....    ....|.+
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~  299 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHL  299 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC----CCceEEE
Confidence            357899999877765532      244566665431  1222210122234567888998888776432    3467899


Q ss_pred             EeCCCCc-EE--EEeec--CCceEEEEEe-CCeEEEEEC------CeEEEEEcCCCeEEEE-EeccCCCcceEEEEeCCC
Q 022387          161 WDDHQSR-CI--GELSF--RSEVRSVKLR-RDRIIVVLE------QKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVG  227 (298)
Q Consensus       161 WD~~~~~-~~--~~~~~--~~~v~~v~~~-~~~l~v~~~------~~I~iwd~~~~~~i~~-~~~~~~~~~~~~~s~~~d  227 (298)
                      +|+.++. ..  ..+..  ......+.|+ .+.+++.++      ..|..+++.+...... +..+........+++.. 
T Consensus       300 ~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-  378 (751)
T 2xe4_A          300 LDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-  378 (751)
T ss_dssp             EESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-
T ss_pred             EECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-
Confidence            9998752 12  33322  2345666644 455666553      2677777754222222 33333323344566654 


Q ss_pred             CeEEEEecCCCceEEE--EEc-------CCcc-eEeeccc-ccceeEEEE----CCCC-CEEEEEeCC---CCEEEEEEC
Q 022387          228 SLVLVCPGLQKGQVRV--EHY-------ASKR-TKFIMAH-DSRIACFAL----TQDG-QLLATSSTK---GTLVRIFNT  288 (298)
Q Consensus       228 ~~~la~sGs~dg~v~i--~~~-------~~~~-~~~~~~H-~~~V~~l~f----spdg-~~lAt~S~D---gt~IrIWd~  288 (298)
                       ..|+++...+|..++  ++.       ..+. ...+.-- ...+..+.+    ++++ .++++.+..   .. |.++|+
T Consensus       379 -~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~-~~~~d~  456 (751)
T 2xe4_A          379 -NYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNT-WFDVSP  456 (751)
T ss_dssp             -SEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEE-EEEECT
T ss_pred             -CEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCE-EEEEEC
Confidence             344445778887666  443       3333 3333211 112233322    4465 455555443   24 666777


Q ss_pred             CCCc
Q 022387          289 LDGT  292 (298)
Q Consensus       289 ~tg~  292 (298)
                      .+|+
T Consensus       457 ~~~~  460 (751)
T 2xe4_A          457 QDHS  460 (751)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            7765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.12  E-value=0.73  Score=41.43  Aligned_cols=200  Identities=8%  Similarity=-0.060  Sum_probs=110.7

Q ss_pred             CCeEEEEEcCCCCEEEEE-cC-CeEEEEEcCCCc----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasg-s~-~gi~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+..++|++.+..|... .. +.|..++++...    ....... .......+++.+....++.+..      ..+.|.
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavD~~~~~lY~~d~------~~~~I~  184 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVS  184 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-SCSCEEEEEEETTTTEEEEEET------TTTEEE
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-CCCCcccEEEEecCCceEEEEC------CCCeEE
Confidence            478899999866655544 33 556667765421    1111110 1234455666664555555543      247888


Q ss_pred             EEeCCCCcEEEEee-cCCceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~-~~~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +.|+........+. .......+++++  ..++++.   .+.|...++........+...-.....+++.++.. .++. 
T Consensus       185 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~-~lY~-  262 (400)
T 3p5b_L          185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYW-  262 (400)
T ss_dssp             EECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT-EEEE-
T ss_pred             EEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC-EEEE-
Confidence            88887654433333 223467788875  4555554   25788888754332222222212223455555443 3333 


Q ss_pred             ecCCCceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          234 PGLQKGQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +-...+.|...+++.....++.   ..-.....|++. .+.++.+-...+. |..+|..+|+.+.+
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNL  326 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEE
Confidence            3566778888888765444332   123456677773 4567777777778 99999888865543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.10  E-value=0.72  Score=41.21  Aligned_cols=190  Identities=7%  Similarity=-0.017  Sum_probs=105.0

Q ss_pred             EEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~  168 (298)
                      .|.+..+ ..+|+.+....|+.++++.........  .......+.+......+..+..      ..+.|..++......
T Consensus        80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~  150 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNV  150 (386)
T ss_dssp             CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCCE
T ss_pred             eECCccc-cceeEeecCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeC------CCCcEEEEecCCCCc
Confidence            3555555 346666666778877776654433322  1344566777766666666652      347899999877653


Q ss_pred             EEEeecC-CceEEEEEe--CCeEEEEEC--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC-ceEE
Q 022387          169 IGELSFR-SEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVR  242 (298)
Q Consensus       169 ~~~~~~~-~~v~~v~~~--~~~l~v~~~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d-g~v~  242 (298)
                      ...+... .....+++.  ...+.++..  +.|.+.++........+.........+++.+.. +.++. +-..+ +.|.
T Consensus       151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~-g~ly~-td~~~~~~I~  228 (386)
T 3v65_B          151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME-GTIYW-TDWGNTPRIE  228 (386)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTT-TEEEE-EECSSSCEEE
T ss_pred             EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCC-CeEEE-eccCCCCEEE
Confidence            3322221 233445554  456666543  688888875433222222221222334454433 23333 34444 6777


Q ss_pred             EEEcCCcceEee-cccccceeEEEECCCCC-EEEEEeCCCCEEEEEECCC
Q 022387          243 VEHYASKRTKFI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       243 i~~~~~~~~~~~-~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..+........+ ...-...+.|+|+|++. ++.+=+..+. |..+|+..
T Consensus       229 r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG  277 (386)
T 3v65_B          229 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDG  277 (386)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTS
T ss_pred             EEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCC
Confidence            777766544433 23334588999997654 4555555566 99999764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.04  E-value=0.65  Score=40.16  Aligned_cols=198  Identities=9%  Similarity=-0.080  Sum_probs=108.3

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CeEEEEEcCC----CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDP----FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasg-s~-~gi~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ...+++|++++..|... .. +.|..++.+.    ......... .......+.+.+....+.++..      ..+.|.+
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavd~~~~~ly~~d~------~~~~I~~  103 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVSV  103 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCCCcCEEEEeecCCeEEEEEC------CCCEEEE
Confidence            57899999876655544 44 4577777765    111111110 0123345555554455555442      3478999


Q ss_pred             EeCCCCcEEEEee-cCCceEEEEEeC--CeEEEEEC---CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEE
Q 022387          161 WDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVLE---QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~~~~~~~~-~~~~v~~v~~~~--~~l~v~~~---~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~  233 (298)
                      .|.........+. .......+++++  ..++++..   +.|..+++.. +....+.. .......+++.++.+ .++. 
T Consensus       104 ~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~-~lY~-  180 (316)
T 1ijq_A          104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSG-RLYW-  180 (316)
T ss_dssp             EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTT-EEEE-
T ss_pred             EeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCC-EEEE-
Confidence            9987544332232 123566777874  45555542   5788887743 32333322 112223445554432 3333 


Q ss_pred             ecCCCceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          234 PGLQKGQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +-+..+.|...++.......+.   ..-.....|++. .+.++.+-...+. |..+|..+|+.+++
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~-V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNL  244 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCCCEE
T ss_pred             EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe-EEEEeCCCCcceEE
Confidence            3567788988888765444332   123456788885 4667777766777 99999888875543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.86  E-value=0.076  Score=51.79  Aligned_cols=199  Identities=10%  Similarity=-0.058  Sum_probs=102.9

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CeEEEEEcCC----CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDP----FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .+..++|.+++..|.....  +.|+.++++.    ......... .......+++.+....++++..      ..+.|.+
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~glavD~~~g~LY~tD~------~~~~I~v  479 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVSV  479 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEECCCSSSBCEECCT------TTSCEEE
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEEEEeeCCcEEEEec------cCCeEEE
Confidence            5667899987766665543  4577777764    111111100 0011222334433333444321      3477899


Q ss_pred             EeCCCCcEEEEeec-CCceEEEEEeC--CeEEEEE--C-CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEE
Q 022387          161 WDDHQSRCIGELSF-RSEVRSVKLRR--DRIIVVL--E-QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       161 WD~~~~~~~~~~~~-~~~v~~v~~~~--~~l~v~~--~-~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~  233 (298)
                      .|.........+.. ......+++++  ..++++.  . +.|..+++... ....+.. .......++++++....+++ 
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~a-  557 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWV-  557 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEE-
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEE-
Confidence            98876543333222 12345566654  3444433  1 56777666422 2222221 11222345665544333443 


Q ss_pred             ecCCCceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       -...+.|.+.++......++.   ..-.....|++..+ .++.+....+. |..+|..+|+.++++
T Consensus       558 -D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          558 -DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLL  621 (699)
T ss_dssp             -ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECC
T ss_pred             -ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEe
Confidence             566778888887654433332   12234566677654 56666666777 999999888877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.67  E-value=0.52  Score=45.25  Aligned_cols=192  Identities=9%  Similarity=-0.006  Sum_probs=94.7

Q ss_pred             EEEEcC-CCCEEEEEcCC------------eEEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           90 HISFNQ-DHGCFAAGTDH------------GFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        90 ~v~fs~-dg~~lasgs~~------------gi~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ++++.+ +|++++.|+.+            .+.+||..+.+......+.  +......+.+..++..+++ +|.     .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~-GG~-----~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT-GGN-----D  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE-CSS-----S
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe-CCC-----C
Confidence            567777 89988887641            2558888776643222210  1111122333445554444 432     2


Q ss_pred             CCeEEEEeCCCCcEEEEeecCC--ceEEEEEe-CCeEEEEEC--------CeEEEEEcCCCeEEEEEec-----cCCCcc
Q 022387          155 LNKVMIWDDHQSRCIGELSFRS--EVRSVKLR-RDRIIVVLE--------QKIFVYNFADLKLLHQIET-----IANPKG  218 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~-~~~l~v~~~--------~~I~iwd~~~~~~i~~~~~-----~~~~~~  218 (298)
                      +..+.+||..+++....-....  .-.++... .+.+++.+.        +.+.+||..+.+- ..+..     ......
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W-~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADK  342 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCT
T ss_pred             CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc-eeCCCccccccccccc
Confidence            3579999998876543222221  12233333 444444432        4799999976652 22210     000000


Q ss_pred             eEEEEeCCCCeEEEEecCCCc---------eEEEEEcCCcceE-eecccc---------cceeEEEEC-CCCCEEEEEeC
Q 022387          219 LCAVSQGVGSLVLVCPGLQKG---------QVRVEHYASKRTK-FIMAHD---------SRIACFALT-QDGQLLATSST  278 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg---------~v~i~~~~~~~~~-~~~~H~---------~~V~~l~fs-pdg~~lAt~S~  278 (298)
                      ...+  ..++.++++ |..+|         .+.+||.....-. ....+.         ..-.++.|. .++++++.|+.
T Consensus       343 ~~~~--~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~  419 (656)
T 1k3i_A          343 QGLY--RSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  419 (656)
T ss_dssp             TGGG--TTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             ccee--ecCCceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence            0001  112233333 33333         4566776654321 111111         123455554 47899999986


Q ss_pred             CC-----------CEEEEEECCCCc
Q 022387          279 KG-----------TLVRIFNTLDGT  292 (298)
Q Consensus       279 Dg-----------t~IrIWd~~tg~  292 (298)
                      ++           . |.+||..+.+
T Consensus       420 ~~~~~~~~~~~~~~-v~~yd~~~~~  443 (656)
T 1k3i_A          420 PDYQDSDATTNAHI-ITLGEPGTSP  443 (656)
T ss_dssp             SSSSSSBCCCCEEE-EECCSTTSCC
T ss_pred             CCCCCCCcCCcceE-EEcCCCCCCC
Confidence            43           4 7888877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.60  E-value=1.1  Score=39.40  Aligned_cols=193  Identities=7%  Similarity=-0.012  Sum_probs=107.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ..+|.+..++ .+|..+....|+..+++.........  .......+.+......+..+..      ..+.|..++....
T Consensus        35 ~~~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~g~  105 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDV------TLDRILRANLNGS  105 (349)
T ss_dssp             SSCEEESSSC-CEEEEECBSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSC
T ss_pred             CCcccccccC-ceeEeecccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEec------cCCceEEEecCCC
Confidence            3456665663 45666666667777766544332222  1344566677766666766652      3478999998765


Q ss_pred             cEEEEeecC-CceEEEEEe--CCeEEEEEC--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC-ce
Q 022387          167 RCIGELSFR-SEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQ  240 (298)
Q Consensus       167 ~~~~~~~~~-~~v~~v~~~--~~~l~v~~~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d-g~  240 (298)
                      .....+... .....+++.  ...+.++..  +.|.+.++........+.........+++.+.. +.++. +-..+ +.
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~-g~ly~-td~~~~~~  183 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME-GTIYW-TDWGNTPR  183 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT-TEEEE-EECSSSCE
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc-CeEEE-eccCCCCE
Confidence            533322221 234455555  456666543  689999886433222222221222334555432 33443 34444 77


Q ss_pred             EEEEEcCCcceEeec-ccccceeEEEECCCCC-EEEEEeCCCCEEEEEECCCC
Q 022387          241 VRVEHYASKRTKFIM-AHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       241 v~i~~~~~~~~~~~~-~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~tg  291 (298)
                      |...+++......+. ..-...+.|+|+|++. ++.+=+..+. |..+|+...
T Consensus       184 I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~  235 (349)
T 3v64_C          184 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGS  235 (349)
T ss_dssp             EEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred             EEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCC
Confidence            877777665444332 2334589999998654 4555455566 999997643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.44  E-value=1.2  Score=38.73  Aligned_cols=196  Identities=9%  Similarity=-0.031  Sum_probs=108.2

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCc---eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           87 TLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        87 ~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .+.+++|.+.+..|. +-.. +.|..++.+...   .+....   ......+.+.+....+..+..      ..+.|.+.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---l~~p~glavd~~~g~ly~~d~------~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---LLSPDGLACDWLGEKLYWTDS------ETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC---CSCCCEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC---CCCccEEEEEcCCCeEEEEEC------CCCEEEEE
Confidence            467889998655444 4444 446677776542   111111   123344555554555555542      24778899


Q ss_pred             eCCCCcEEEEe-ecCCceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEe
Q 022387          162 DDHQSRCIGEL-SFRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       162 D~~~~~~~~~~-~~~~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      +.........+ ........+++++  ..++++.   .+.|..+++.... ...+. ..-..-..++++++.. .++. +
T Consensus       107 ~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~-~lY~-a  183 (318)
T 3sov_A          107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQ-KLYW-A  183 (318)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTT-EEEE-E
T ss_pred             ECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCC-EEEE-E
Confidence            88654322222 2223456777764  4555554   2578888774322 22332 1111223445554433 3333 3


Q ss_pred             cCCCceEEEEEcCCcceEe-ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          235 GLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       235 Gs~dg~v~i~~~~~~~~~~-~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      -+..+.|...++....... +.........|++.. +.++.+-...+. |..++..+|+.+++
T Consensus       184 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~  244 (318)
T 3sov_A          184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLRE  244 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEE
T ss_pred             ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEE
Confidence            5677888888887554333 333445677888864 456666656666 99999988875443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.08  E-value=1.8  Score=38.83  Aligned_cols=184  Identities=7%  Similarity=-0.094  Sum_probs=103.7

Q ss_pred             CEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC----cEEEEee
Q 022387           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS  173 (298)
Q Consensus        98 ~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~----~~~~~~~  173 (298)
                      .+|+.+....|+..+++.........  .......+++......+..+..      ..+.|+.++....    .....+.
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC------CCCEEEEC
T ss_pred             ceeEEeccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCCcceEEEe
Confidence            46777777888888887665433332  2455667777776677776653      3477888888652    1222222


Q ss_pred             -cCCceEEEEEe--CCeEEEEEC--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387          174 -FRSEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (298)
Q Consensus       174 -~~~~v~~v~~~--~~~l~v~~~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~  248 (298)
                       .......+++.  ...+.++..  +.|.+.++........+.........+++.+.. +.++.+-....+.|...+++.
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETTS
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCCC
Confidence             12345556665  456666643  688888886544333333222222344554432 334432122346777777766


Q ss_pred             cceEee-cccccceeEEEECCCCCEEEEE-eCCCCEEEEEECCCC
Q 022387          249 KRTKFI-MAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDG  291 (298)
Q Consensus       249 ~~~~~~-~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~tg  291 (298)
                      .....+ ...-...+.|++++++..|.-+ +..+. |..+|+...
T Consensus       235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~  278 (400)
T 3p5b_L          235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGG  278 (400)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred             CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCC
Confidence            544433 3333568999999876555544 44556 999998643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.07  E-value=2.9  Score=41.22  Aligned_cols=182  Identities=7%  Similarity=-0.085  Sum_probs=99.3

Q ss_pred             EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC----cEEEEee-
Q 022387           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-  173 (298)
Q Consensus        99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~----~~~~~~~-  173 (298)
                      +|+......|+..+++.........  .......+.+......++++..      ..+.|+.+++...    .....+. 
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~------~~~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeec------cceeEEEEeccCCCCCcceeEEEec
Confidence            5666666777777776554332222  1345556667666666666653      3477888887652    1122222 


Q ss_pred             cCCceEEEEEe--CCeEEEEEC--CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387          174 FRSEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (298)
Q Consensus       174 ~~~~v~~v~~~--~~~l~v~~~--~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~  248 (298)
                      .......|++.  ...|+++..  +.|.+.++..... .++. ........+++.+.. +.++.+--...+.|...++..
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCC
Confidence            11234445554  456776653  6899999864433 3332 222223345555443 234332112236788777776


Q ss_pred             cceEee-cccccceeEEEECCCCCEE-EEEeCCCCEEEEEECCCC
Q 022387          249 KRTKFI-MAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       249 ~~~~~~-~~H~~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~tg  291 (298)
                      ....++ ...-...+.|++++.+..| .+=...+. |...++...
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~  590 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGG  590 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred             CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCC
Confidence            655443 3333578999999765444 44444555 889987643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.99  E-value=3.1  Score=41.05  Aligned_cols=198  Identities=9%  Similarity=-0.064  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCc----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+..++|.+.+..|. +-.. +.|+.++++...    ....... .......+++.+....++++..      ..+.|.
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~------~~~~I~  496 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDS------VLGTVS  496 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEE
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEec------CCCeEE
Confidence            3577888988555444 4333 446666665421    1111110 1233445666666656666553      347899


Q ss_pred             EEeCCCCcEEEEee-cCCceEEEEEeC--CeEEEEEC---CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEE
Q 022387          160 IWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVLE---QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       160 iWD~~~~~~~~~~~-~~~~v~~v~~~~--~~l~v~~~---~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la  232 (298)
                      +.++........+. .......|++++  ..|+++..   +.|...++..... ..+.. .......+++.+... .+++
T Consensus       497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~-~LYw  574 (791)
T 3m0c_C          497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSG-RLYW  574 (791)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTT-EEEE
T ss_pred             EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCC-eEEE
Confidence            99987554333332 223567788875  45666542   5788888754433 33322 212233455554433 3333


Q ss_pred             EecCCCceEEEEEcCCcceEee-cc--cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          233 CPGLQKGQVRVEHYASKRTKFI-MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~~~~~~-~~--H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                       +-...+.|...++......++ ..  .-.....|++.. ++++.+-...+. |...|..+|+.+.
T Consensus       575 -aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~-I~~~dk~tG~~~~  637 (791)
T 3m0c_C          575 -VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA-IFSANRLTGSDVN  637 (791)
T ss_dssp             -EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE-EEEEETTTCCCCE
T ss_pred             -EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCE-EEEEeCCCCcceE
Confidence             355667888888876554433 22  223456777743 356666666666 8888888876543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.74  E-value=2.1  Score=37.91  Aligned_cols=131  Identities=11%  Similarity=0.131  Sum_probs=80.6

Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--------EEEEE-----CCeEEEEEcC-CCeEEEEEe-------cc
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--------IIVVL-----EQKIFVYNFA-DLKLLHQIE-------TI  213 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--------l~v~~-----~~~I~iwd~~-~~~~i~~~~-------~~  213 (298)
                      .+.+.++|+ +++.++.+.. ..+..+..-+.+        +++++     .++|.+|++. ..+.+..+.       +.
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~  126 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA  126 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred             CCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence            366999999 8888887765 456666654433        34443     3689999883 333345542       11


Q ss_pred             -CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC---c-----ceEeecccccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387          214 -ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---K-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (298)
Q Consensus       214 -~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~---~-----~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~Ir  284 (298)
                       ..+.+.|.+.....+.+.++....+|.+..|++..   .     .+.+|.- .+.+..|+..+....|..+-+|.. |.
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-Iw  204 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-IW  204 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-EE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-EE
Confidence             34455555543323443333467789988887732   1     1233332 357888999988888888888866 65


Q ss_pred             EEECC
Q 022387          285 IFNTL  289 (298)
Q Consensus       285 IWd~~  289 (298)
                      .++.+
T Consensus       205 ~~da~  209 (355)
T 3amr_A          205 KFSAE  209 (355)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            66644

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.40  E-value=0.83  Score=41.62  Aligned_cols=106  Identities=14%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             EEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEEEecCCCceEEEEEcC----Cc------
Q 022387          182 KLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA----SK------  249 (298)
Q Consensus       182 ~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~----~~------  249 (298)
                      +-+...++++.++.||.-++......+.++...  .-..+..+..+++|.+||+.|.  ..|.|-.+-    ..      
T Consensus        29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccc
Confidence            345667888889999999987544455565532  1112333444556689998554  345553322    11      


Q ss_pred             -c--eEeecc------cccceeEEEECCC---CCEEEEEeCCCCEEEEEECCC
Q 022387          250 -R--TKFIMA------HDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       250 -~--~~~~~~------H~~~V~~l~fspd---g~~lAt~S~Dgt~IrIWd~~t  290 (298)
                       +  ...+.-      ...+|..+-|+|-   |..|++--.|++ ||+||+..
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~  158 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILN  158 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTC
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEccc
Confidence             1  112221      2467999999996   457888888999 99999986

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.92  E-value=4.9  Score=38.95  Aligned_cols=190  Identities=14%  Similarity=0.170  Sum_probs=103.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEE-eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      .+.|++|.-..+|.+ =.|+.+|+..||-...+..... .. ....+..+....++ .+-+++        .+-+..+|.
T Consensus        21 ~n~V~~I~qD~~G~l-WigT~~GL~ryDG~~~~~~~~~~~~-~~~~i~~i~~d~~g-~lWigT--------~~Gl~~yd~   89 (758)
T 3ott_A           21 ASVVSCFLQDSEGLI-WIGSNKGLFSYDGYSTQQHFTYGEN-NNTRIYCGVIIDNT-YLYMGT--------DNGILVYNY   89 (758)
T ss_dssp             CCCEEEEEECTTSCE-EEEESSCEEEECSSCEEECSCTTST-TSSCEEEEEEETTT-EEEEEE--------TTEEEEEET
T ss_pred             cceEEEEEECCCCCE-EEEECCCccccCCCceEEEEccCCC-CCceEEEEEEcCCC-cEEEEe--------CCCeEEEeC
Confidence            457999998888863 3455788877764322110000 00 11234433333333 333433        234788998


Q ss_pred             CCCcEEEEee-cCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEec---cCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~---~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      .+.+...... ....|.++......+.+++.+.+..||..+.+. ..+..   ......+.++..+.++.+.+  |+.+|
T Consensus        90 ~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~~G  166 (758)
T 3ott_A           90 RADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYV--GTYNG  166 (758)
T ss_dssp             TTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEE--EETTE
T ss_pred             CCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEE--EeCCC
Confidence            7754322111 123466666667788888888899999876543 33421   11112345666676667666  44555


Q ss_pred             eEEEEEcCCcceEeec--cc----ccceeEEEECCCCC--EEEEEeCCCCEEEEEECCCCcE
Q 022387          240 QVRVEHYASKRTKFIM--AH----DSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       240 ~v~i~~~~~~~~~~~~--~H----~~~V~~l~fspdg~--~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                       +..++...+....+.  ..    ...|++|....++.  +++|   ++. +..+|..+++.
T Consensus       167 -l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt---~~G-l~~~~~~~~~~  223 (758)
T 3ott_A          167 -LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT---EGY-LFQYFPSTGQI  223 (758)
T ss_dssp             -EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE---EEE-EEEEETTTTEE
T ss_pred             -HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE---CCC-CeEEcCCCCeE
Confidence             445565544433221  11    23488998888765  4444   245 77888777643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.90  E-value=6.7  Score=40.41  Aligned_cols=187  Identities=16%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             CCeEEEE---EcCC-CCEEEEEc----------CCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC
Q 022387           86 PTLLHIS---FNQD-HGCFAAGT----------DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (298)
Q Consensus        86 ~~V~~v~---fs~d-g~~lasgs----------~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (298)
                      ..+.|++   |..+ ..+|++|.          .+| +.+|++...+.....+...++.+..++- +.+.+++..+    
T Consensus       829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~-~~g~Lla~ig----  903 (1158)
T 3ei3_A          829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVE-FNGKLLASIN----  903 (1158)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEE-ETTEEEEEET----
T ss_pred             cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEee-eCCEEEEEcC----
Confidence            3444444   4433 46899887          235 6788886444332222112566665553 4555444444    


Q ss_pred             CCCCCCeEEEEeCCCCcEEE-EeecCCceE--EEEEeCCeEEEEEC-CeEEE--EEcCCCeEEEEEeccCCCcceEEEEe
Q 022387          151 PQYPLNKVMIWDDHQSRCIG-ELSFRSEVR--SVKLRRDRIIVVLE-QKIFV--YNFADLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       151 ~~~~d~~v~iWD~~~~~~~~-~~~~~~~v~--~v~~~~~~l~v~~~-~~I~i--wd~~~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                           ++|++||+...+.++ +......+.  .+....++++++.- +.|.+  |+-...+ +..+.....+..+.+...
T Consensus       904 -----~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~a~D~~~~~vta~~~  977 (1158)
T 3ei3_A          904 -----STVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEEIARDFNPNWMSAVEI  977 (1158)
T ss_dssp             -----TEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEEEEECCSCBCEEEEEE
T ss_pred             -----CEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEEEEeecccccEEEEEE
Confidence                 789999998765443 222222233  45455676666643 45555  4444333 344444555555554444


Q ss_pred             CCCCeEEEEecCCCceEEEEEcCCc--------ceE-eecccc-cceeEEE---ECCCC---------CEEEEEeCCCCE
Q 022387          225 GVGSLVLVCPGLQKGQVRVEHYASK--------RTK-FIMAHD-SRIACFA---LTQDG---------QLLATSSTKGTL  282 (298)
Q Consensus       225 ~~d~~~la~sGs~dg~v~i~~~~~~--------~~~-~~~~H~-~~V~~l~---fspdg---------~~lAt~S~Dgt~  282 (298)
                      =.+..+++  +..+|.+.+......        ++. .-.-|- ..|+++.   +.+.+         ..+.-++.+|+ 
T Consensus       978 ld~~t~l~--aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~Gs- 1054 (1158)
T 3ei3_A          978 LDDDNFLG--AENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGM- 1054 (1158)
T ss_dssp             EETTEEEE--EETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSC-
T ss_pred             EccCcEEE--EcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCE-
Confidence            22335554  689999998554431        111 112233 3577775   33322         23555667888 


Q ss_pred             EEEE
Q 022387          283 VRIF  286 (298)
Q Consensus       283 IrIW  286 (298)
                      |-+.
T Consensus      1055 Ig~l 1058 (1158)
T 3ei3_A         1055 IGLV 1058 (1158)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.70  E-value=0.89  Score=47.63  Aligned_cols=192  Identities=11%  Similarity=0.169  Sum_probs=107.3

Q ss_pred             EEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC-cEE
Q 022387           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCI  169 (298)
Q Consensus        91 v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~-~~~  169 (298)
                      .-.+|..+.||.-....++|||+++...+....+  ...+..+.|. +.+.+++++        +..|..|++... ...
T Consensus        71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~--~e~VvfWkWi-s~~~l~lVT--------~~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM--TDDVTFWKWI-SLNTVALVT--------DNAVYHWSMEGESQPV  139 (1630)
T ss_pred             hccCCCcceEEEecCCeEEEeehHHhhhhccccc--CCCceEEEec-CCCeeEEEc--------CCeEEEeccCCCCccH
Confidence            4467777888877777899999999887766665  4566666665 456778877        466999998642 222


Q ss_pred             EEeec-----CCceEEEEEeCC--eEEEEE--------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC-CeEEEE
Q 022387          170 GELSF-----RSEVRSVKLRRD--RIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVC  233 (298)
Q Consensus       170 ~~~~~-----~~~v~~v~~~~~--~l~v~~--------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d-~~~la~  233 (298)
                      .-+.-     ...|.....+++  .+++.+        .|.+.+|....... +.+.+|........+...+. ..++++
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEE
Confidence            21211     124444444443  233221        27889998854322 23344433222222211111 122222


Q ss_pred             e--cCCCceEEEEEcCCc----c------eEe-ec--ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          234 P--GLQKGQVRVEHYASK----R------TKF-IM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       234 s--Gs~dg~v~i~~~~~~----~------~~~-~~--~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      +  ....|.+.|-++...    +      ... +.  +-..-..+|..|+....+-.-..-|- |.++|+.||.++.
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIY  294 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhh
Confidence            1  111257777555322    1      111 11  11233566777777666666667888 9999999999874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=93.51  E-value=3.4  Score=35.73  Aligned_cols=182  Identities=7%  Similarity=-0.028  Sum_probs=97.0

Q ss_pred             EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE---EEEeecC
Q 022387           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELSFR  175 (298)
Q Consensus        99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~---~~~~~~~  175 (298)
                      +|+.+....|+.++++..................+.+......+..+..      ..+.|..++...+..   +..-.. 
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~------~~~~I~r~~~~g~~~~~~~~~~~l-   78 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGL-   78 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET------TTTEEEEEETTSSSCCCEEEEECC-
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC------CCCcEEEEEccCCCceEEEEcCCC-
Confidence            5666666778888887653111111101123445566665566666652      347899998876531   211111 


Q ss_pred             CceEEEEEe--CCeEEEEE--CCeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc
Q 022387          176 SEVRSVKLR--RDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (298)
Q Consensus       176 ~~v~~v~~~--~~~l~v~~--~~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~  250 (298)
                      .....+++.  ...+.++.  .+.|.++++..... ..+. ........+++.+.. +.++.+--...+.|...+.+...
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~  156 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSS  156 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCC
Confidence            234445554  45566654  36899999854322 2222 221222344555432 23443211235677777776544


Q ss_pred             eEee-cccccceeEEEECCCCC-EEEEEeCCCCEEEEEECCC
Q 022387          251 TKFI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       251 ~~~~-~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ...+ ..--...+.|+|++++. ++.+=+..+. |..+|+..
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG  197 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDG  197 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS
T ss_pred             eEEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCC
Confidence            3333 22234578999998655 4444455566 99999863

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.25  E-value=5.9  Score=37.76  Aligned_cols=198  Identities=9%  Similarity=-0.066  Sum_probs=105.1

Q ss_pred             CCeEEEEEcCCCCEEEEEc-C-CeEEEEEcCCCce-EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           86 PTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs-~-~gi~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      .....++|++.+..|.... . +.|..++++.... ...... .......+++.+..+.+..+..      ..+.|.+.|
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~~~P~GlAvD~~~~~ly~~d~------~~~~I~v~~  112 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDS------ETNRIEVSN  112 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SCSCEEEEEEETTTTEEEEEET------TTTEEEEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CCCCcCeEEEEecCCEEEEEeC------CCCEEEEEE
Confidence            3678999998776665544 3 4466677664421 111111 1145566777776666666553      347899999


Q ss_pred             CCCCcEEEEe-ecCCceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEec
Q 022387          163 DHQSRCIGEL-SFRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       163 ~~~~~~~~~~-~~~~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      .........+ ..-.....+++++  ..+++..   ...|...++.... ...+. .....-..+++.++.+ .++. +-
T Consensus       113 ~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~~P~Glald~~~~-~LY~-aD  189 (619)
T 3s94_A          113 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQ-KLYW-AD  189 (619)
T ss_dssp             TTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTT-EEEE-EE
T ss_pred             CCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-eEEEEeCCCCCCcEEEEEccCC-EEEE-Ee
Confidence            8764332222 1223455677765  3455554   2466666654322 22222 1111223345554432 3333 35


Q ss_pred             CCCceEEEEEcCCcceEee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          236 LQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      ...+.|...++.......+ .+.-.....|++..+ .++.|-...+. |...|..+|+.+.
T Consensus       190 ~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~-V~~~d~~tg~~~~  248 (619)
T 3s94_A          190 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHS-ILACNKYTGEGLR  248 (619)
T ss_dssp             TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCS-EEEEESSSCCCCE
T ss_pred             CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCE-EEEEECCCCcccE
Confidence            6667788877766443322 222334567888776 66666666778 9999998887543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.16  E-value=5.4  Score=37.02  Aligned_cols=198  Identities=8%  Similarity=-0.055  Sum_probs=105.5

Q ss_pred             CCeEEEEE-------cCCCCEEEEEcCCe--------EEEEEcCC-Cce------EEEEeeecCCceEEEEEecCCCEEE
Q 022387           86 PTLLHISF-------NQDHGCFAAGTDHG--------FRIYNCDP-FRE------IFRRDFERGGGIGVVEMLFRCNILA  143 (298)
Q Consensus        86 ~~V~~v~f-------s~dg~~lasgs~~g--------i~vw~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  143 (298)
                      .....|+|       +++|++|.++...+        +.+++... +..      .....+  .+. ..+.+.+....|.
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~--~~p-~giavdp~~g~LY  262 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY--KQC-NGATIHPINGELY  262 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE--SCC-CCEEECTTTCCEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC--CCc-eEEEEcCCCCeEE
Confidence            35899999       99999766665432        33443333 111      111122  222 2334455444555


Q ss_pred             EEeCCCCCCCCCCeEEEEeCC-------CCcE-----------EEE-eec--CCceEEEEEeCCe--EEEEE--CCeEEE
Q 022387          144 LVGGGPDPQYPLNKVMIWDDH-------QSRC-----------IGE-LSF--RSEVRSVKLRRDR--IIVVL--EQKIFV  198 (298)
Q Consensus       144 ~~~~~~~~~~~d~~v~iWD~~-------~~~~-----------~~~-~~~--~~~v~~v~~~~~~--l~v~~--~~~I~i  198 (298)
                      ++..      ..+.|..+|+.       ++..           ... +..  ......++++++.  +.++.  .+.|+.
T Consensus       263 vtd~------~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          263 FNSY------EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             EEET------TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEC------CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence            5442      35789999987       4443           112 222  2345788898753  55654  368888


Q ss_pred             EEc--CCCeE--EEEEecc----------------CCCcceEEEEeC-----CCCeEEEEecCCCceEEEEEcCCcceEe
Q 022387          199 YNF--ADLKL--LHQIETI----------------ANPKGLCAVSQG-----VGSLVLVCPGLQKGQVRVEHYASKRTKF  253 (298)
Q Consensus       199 wd~--~~~~~--i~~~~~~----------------~~~~~~~~~s~~-----~d~~~la~sGs~dg~v~i~~~~~~~~~~  253 (298)
                      ++.  .....  ..++.+.                ..|...+++...     .++.+++ +-..+..|+..+.+ ..+.+
T Consensus       337 id~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyV-aD~~N~rIr~i~~~-G~v~T  414 (496)
T 3kya_A          337 SDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYF-VDRLNFCVRKVTPE-GIVST  414 (496)
T ss_dssp             EEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEE-EEGGGTEEEEECTT-CBEEE
T ss_pred             EecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEE-EECCCCEEEEEeCC-CCEEE
Confidence            665  33322  1233321                012112333210     2334444 35667788877743 34444


Q ss_pred             eccc------------------------ccceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          254 IMAH------------------------DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       254 ~~~H------------------------~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      +-+.                        -.....|+++++ |.++++=..... ||.++++...+++
T Consensus       415 iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~r-Irki~~~~~~~~~  480 (496)
T 3kya_A          415 YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHT-IRTISMEQEENVA  480 (496)
T ss_dssp             EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTE-EEEEEECCCC---
T ss_pred             EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCE-EEEEECCCCcccc
Confidence            4321                        124779999997 777777666676 9999998776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.15  E-value=0.25  Score=48.06  Aligned_cols=180  Identities=7%  Similarity=-0.074  Sum_probs=90.5

Q ss_pred             EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC----CcEEEEeec
Q 022387           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELSF  174 (298)
Q Consensus        99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~----~~~~~~~~~  174 (298)
                      +|+......|++.+++.........  .......+.+......++++..      ..+.|+.+++..    ......+..
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i~~  450 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISR  450 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCT------TTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred             eEEecCccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEec------CCCeEEEEecCCCCCCcceEEEEeC
Confidence            3444445667777776544322111  1233445566665666666542      346788888765    121111111


Q ss_pred             -CCceEEEEEe--CCeEEEEE--CCeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecCC-CceEEEEEcC
Q 022387          175 -RSEVRSVKLR--RDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYA  247 (298)
Q Consensus       175 -~~~v~~v~~~--~~~l~v~~--~~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs~-dg~v~i~~~~  247 (298)
                       ......+++.  ...++++.  .+.|.++++..... .++. ........+++.+.. +.+++ +... .+.|...++.
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~-g~ly~-td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVH-GFMYW-TDWGTPAKIKKGGLN  527 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSS-SCCEE-CCCSSSCCEEBCCSS
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCC-CcEEE-cccCCCCeEEEEeCC
Confidence             1123344443  45555553  36898988764433 3332 211222234444432 23333 2322 2677766665


Q ss_pred             CcceEee-cccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCC
Q 022387          248 SKRTKFI-MAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       248 ~~~~~~~-~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ......+ ...-...+.|+|+|++ +++.+-+..+. |.++++..
T Consensus       528 G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG  571 (699)
T 1n7d_A          528 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG  571 (699)
T ss_dssp             SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSS
T ss_pred             CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCC
Confidence            4433322 2223457899999874 55566566666 99999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=93.02  E-value=5  Score=36.31  Aligned_cols=192  Identities=9%  Similarity=0.002  Sum_probs=100.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-----CeEEEEEcCCCce--EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           86 PTLLHISFNQDHGCFAAGTD-----HGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-----~gi~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ....+++|+++|+++++...     .++...+......  .....   ......+.+......+.++..      ..+.|
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~---~~~P~giavd~~~G~lyv~d~------~~~~V  252 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCN---ARGAKTCAVHPQNGKIYYTRY------HHAMI  252 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEE---CSSBCCCEECTTTCCEEECBT------TCSEE
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccc---cCCCCEEEEeCCCCeEEEEEC------CCCEE
Confidence            46889999999996555542     2333333221111  00111   122223444442233333331      35789


Q ss_pred             EEEeCCCCcEEEEe-ecC--CceEEEEEeCC--eEEEEEC--CeEEEEEcC--CCeE--EEEEecc-CCC----------
Q 022387          159 MIWDDHQSRCIGEL-SFR--SEVRSVKLRRD--RIIVVLE--QKIFVYNFA--DLKL--LHQIETI-ANP----------  216 (298)
Q Consensus       159 ~iWD~~~~~~~~~~-~~~--~~v~~v~~~~~--~l~v~~~--~~I~iwd~~--~~~~--i~~~~~~-~~~----------  216 (298)
                      +.+|..++.....+ ...  .....++++++  .+.++..  +.|+.+++.  +++.  ...+... ...          
T Consensus       253 ~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a  332 (433)
T 4hw6_A          253 SSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGA  332 (433)
T ss_dssp             EEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred             EEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccce
Confidence            99998877652222 221  22345888875  3666653  689988864  2221  1223221 000          


Q ss_pred             --cceEEEEe---------CCCCeEEEEecCCCceEEEEEcCCcceEeeccc------------------ccceeEEEEC
Q 022387          217 --KGLCAVSQ---------GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH------------------DSRIACFALT  267 (298)
Q Consensus       217 --~~~~~~s~---------~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H------------------~~~V~~l~fs  267 (298)
                        ..-..+..         +.++.+++ +-..++.|+..+.+. .+.++.+.                  -.....|+++
T Consensus       333 ~~~~P~giav~~n~~y~~dd~~g~lyv-aD~~n~~I~~~~~~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd  410 (433)
T 4hw6_A          333 RLWGPNQGIFVKNEAYAGEEDEYDFYF-CDRDSHTVRVLTPEG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD  410 (433)
T ss_dssp             BCSSEEEEEEEECGGGTTSSCCEEEEE-EETTTTEEEEECTTS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred             EEcCCccEEEEccccccccCCCCcEEE-EECCCCEEEEECCCC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence              01112333         45555555 356677787776533 33333221                  1237889999


Q ss_pred             -CCCCEEEEEeCCCCEEEEEECC
Q 022387          268 -QDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       268 -pdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                       ++|.++++=...+. ||.++++
T Consensus       411 ~~~g~lyVaD~~n~r-Ir~i~~e  432 (433)
T 4hw6_A          411 MKRKCFYIGDCDNHR-VRKIAPE  432 (433)
T ss_dssp             TTTTEEEEEEGGGTE-EEEEEEC
T ss_pred             CCCCEEEEEeCCCCE-EEEEecC
Confidence             77887777776777 9988864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.66  E-value=7.3  Score=37.23  Aligned_cols=195  Identities=7%  Similarity=-0.078  Sum_probs=110.1

Q ss_pred             CeEEEEEcCCCCEEEEE-cC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasg-s~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .+..|+|.+++..|... .. +.|..++++.......... .......+++.+....+..+..      ..+.|.+.++.
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~------~~~~I~v~~~d  110 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADT------GTNRIEVSKLD  110 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEEC------CCCEEEEEecC
Confidence            67899999876665544 34 4466777665433222221 1123445666655555655543      24778888876


Q ss_pred             CCcEEEEe-ecCCceEEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387          165 QSRCIGEL-SFRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       165 ~~~~~~~~-~~~~~v~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d  238 (298)
                      .......+ ........+++++  ..+.+..   .+.|...++..... ..+.........+++..+.+ .++. +-...
T Consensus       111 G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~-~LY~-aD~~~  187 (628)
T 4a0p_A          111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKR-RLYW-TDLDT  187 (628)
T ss_dssp             STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTT-EEEE-EETTT
T ss_pred             CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccC-EEEE-EECCC
Confidence            54322222 2223467788875  3555554   25777777743332 22222212223345554432 3333 35667


Q ss_pred             ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       239 g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      +.|...++.......+...-.....|++.. +.++.|-...+. |...|..+|+.
T Consensus       188 ~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~  240 (628)
T 4a0p_A          188 NLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQN  240 (628)
T ss_dssp             TEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCS
T ss_pred             CEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCc
Confidence            788888876654444444445567888876 566667666777 99999888754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.50  E-value=6.7  Score=36.39  Aligned_cols=202  Identities=5%  Similarity=-0.007  Sum_probs=101.4

Q ss_pred             CeEEEEEcC-CCC-EEEEEcC-CeEEEEEcCCCceEEEEeeec--CCceEEEEE-------ecCCCEEEEEeCCCCCCCC
Q 022387           87 TLLHISFNQ-DHG-CFAAGTD-HGFRIYNCDPFREIFRRDFER--GGGIGVVEM-------LFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        87 ~V~~v~fs~-dg~-~lasgs~-~gi~vw~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  154 (298)
                      ....++|.| ++. ++++-.. ..+++.|.+............  ......+.+       ..+++.++++.........
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            567899998 344 4444433 446677766654433222100  113566777       6677766666532100000


Q ss_pred             CCeEEEEeCCC-CcEE-----EEeecCCceEEEEEeC--CeEEEEE--CCeEEEEEcC-------CCeE-----------
Q 022387          155 LNKVMIWDDHQ-SRCI-----GELSFRSEVRSVKLRR--DRIIVVL--EQKIFVYNFA-------DLKL-----------  206 (298)
Q Consensus       155 d~~v~iWD~~~-~~~~-----~~~~~~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~-------~~~~-----------  206 (298)
                      ...|.+.+... +...     ..+........+.+++  ..|.++.  .+.|..+|+.       +++.           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            12366666443 1211     1221112345667776  4556554  3689999986       4443           


Q ss_pred             EEEE-eccC-CCcceEEEEeCCCCeEEEEecCCCceEEEEEcC--Ccce---Eeeccc---c------------ccee-E
Q 022387          207 LHQI-ETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRT---KFIMAH---D------------SRIA-C  263 (298)
Q Consensus       207 i~~~-~~~~-~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~---~~~~~H---~------------~~V~-~  263 (298)
                      ...+ .... .....+++++  ++.+|.++-+.+..|+..+..  .+.+   .++-+.   .            .... -
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence            2222 2111 1123345554  445322235667777775543  3222   222221   0            1244 4


Q ss_pred             EEEC-------CCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          264 FALT-------QDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       264 l~fs-------pdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                      ++..       .+|.++++=..... ||.++ .+|.
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~  411 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI  411 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB
T ss_pred             EEEccccccccCCCeEEEEECCCCE-EEEEe-CCCC
Confidence            5554       56777777776777 99998 5664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.37  E-value=0.33  Score=42.90  Aligned_cols=137  Identities=9%  Similarity=0.079  Sum_probs=68.6

Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceE--EEEE-------------eCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCc
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVR--SVKL-------------RRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK  217 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~--~v~~-------------~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~  217 (298)
                      .||.|..+|..+|.....+....-+.  -+..             ....+++.. ++++...|+.+++.+.++.......
T Consensus        65 ~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~  144 (339)
T 2be1_A           65 GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNG  144 (339)
T ss_dssp             TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC
T ss_pred             CCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcc
Confidence            57899999988875544443322110  0111             223333333 5799999999999999987532100


Q ss_pred             ------c-eEEEE---e-CCCCeEEEEecCCCceEEEEEcCCcceEeec-----cccc--ce-eEEEECCCCCEEEEEeC
Q 022387          218 ------G-LCAVS---Q-GVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-----AHDS--RI-ACFALTQDGQLLATSST  278 (298)
Q Consensus       218 ------~-~~~~s---~-~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~-----~H~~--~V-~~l~fspdg~~lAt~S~  278 (298)
                            . +....   . ..++.+++  |..+..+.+.+.+ .....+.     .+..  .+ .+-.++.|+.+++ ++.
T Consensus       145 ~~~~~~e~~~~~~d~~~d~~~~~v~i--g~~~y~v~~~~~s-G~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~  220 (339)
T 2be1_A          145 YFGSQSVDCSPEEKIKLQECENMIVI--GKTIFELGIHSYD-GASYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFR  220 (339)
T ss_dssp             --------------------CCEEEE--EEEEEECEECCTT-SCCCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EET
T ss_pred             cccccccccccccccccccCCCeEEE--ecceEEEEEECCC-CCeEEEecccccccccccccccccccccCCcEEE-ECC
Confidence                  1 11110   0 11122332  5555555554422 2211111     0000  00 0011134577755 577


Q ss_pred             CCCEEEEEECCCCcEEE
Q 022387          279 KGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       279 Dgt~IrIWd~~tg~~l~  295 (298)
                      ||. |.-+|..+|+.+.
T Consensus       221 dg~-v~A~d~~~G~~~W  236 (339)
T 2be1_A          221 DKS-LLASDLDFRIARW  236 (339)
T ss_dssp             TTE-EEEECSTTCCEEE
T ss_pred             CCE-EEEEECCCCcEEE
Confidence            898 8899999998875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.58  E-value=5.6  Score=33.53  Aligned_cols=188  Identities=13%  Similarity=0.064  Sum_probs=93.2

Q ss_pred             CCCEEEEEcC-----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEE
Q 022387           96 DHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (298)
Q Consensus        96 dg~~lasgs~-----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~  170 (298)
                      ++.+++.|+.     +.+.+||..+.+......+. ...........+ +.+.+.+|.+......+.+.+||..+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP-TPRDSLAACAAE-GKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS-SCCBSCEEEEET-TEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC-ccccceeEEEEC-CEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            6667777763     33567788777654333321 111111112223 4455555432111134678999998876543


Q ss_pred             EeecCC--ceEEEEEeCCeEEEEE-----------CCeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeEEEEecC
Q 022387          171 ELSFRS--EVRSVKLRRDRIIVVL-----------EQKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       171 ~~~~~~--~v~~v~~~~~~l~v~~-----------~~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~la~sGs  236 (298)
                      .-....  .-.++....+.+.+.+           .+.+.+||+.+.+= ..+.....+. ...++..  ++.++++ |.
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~-GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-TELCPMIEARKNHGLVFV--KDKIFAV-GG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CC
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE-EECCCccchhhcceEEEE--CCEEEEE-eC
Confidence            222211  1222333355555543           24588999876542 2222211111 1122222  2366665 54


Q ss_pred             CC-----ceEEEEEcCCcceEee---cccccceeEEEECCCCCEEEEEeCC-----CCEEEEEECCCCc
Q 022387          237 QK-----GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (298)
Q Consensus       237 ~d-----g~v~i~~~~~~~~~~~---~~H~~~V~~l~fspdg~~lAt~S~D-----gt~IrIWd~~tg~  292 (298)
                      .+     ..+.++|..+..-..+   ........++.+  ++++++.|+.+     .. |.+||..+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCe
Confidence            43     3566788766542222   111122333333  77889998854     34 8889988764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.35  E-value=6.9  Score=36.99  Aligned_cols=131  Identities=13%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             CeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCce-----------EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFRE-----------IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (298)
                      ....|.++|||+++++++.  ..+-|++.+....           ....+.  +-+.+-+...|+++..+..+     .|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTt-----lf  396 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTT-----LF  396 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEE-----ET
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEee-----ee
Confidence            3456889999999998876  5577998864211           112221  22344444555555566666     56


Q ss_pred             CCCeEEEEeCCCC----------cEEEEeecCCceEEEEE--------eCCeEEEEEC--------------CeEEEEEc
Q 022387          154 PLNKVMIWDDHQS----------RCIGELSFRSEVRSVKL--------RRDRIIVVLE--------------QKIFVYNF  201 (298)
Q Consensus       154 ~d~~v~iWD~~~~----------~~~~~~~~~~~v~~v~~--------~~~~l~v~~~--------------~~I~iwd~  201 (298)
                      -|..|..|++...          ..+..+..+-.+--+..        ..+.|++...              ..-.++||
T Consensus       397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidI  476 (638)
T 3sbq_A          397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDI  476 (638)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEEC
T ss_pred             ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEec
Confidence            7899999997542          34445544322222211        1123333321              26788898


Q ss_pred             --CCCeEEEEEeccCCCcceEEEEe
Q 022387          202 --ADLKLLHQIETIANPKGLCAVSQ  224 (298)
Q Consensus       202 --~~~~~i~~~~~~~~~~~~~~~s~  224 (298)
                        ..+++++.......|..++.+..
T Consensus       477 sGdkM~lv~D~P~~~EPHda~~v~~  501 (638)
T 3sbq_A          477 SGDEMKLVHDGPTFAEPHDCIMARR  501 (638)
T ss_dssp             SSSSCEEEEEEEESSCCCCEEEEEG
T ss_pred             CCCceEEEecCCCCCCCcceEEecH
Confidence              46788888887777777766654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.14  E-value=6.1  Score=33.15  Aligned_cols=187  Identities=11%  Similarity=0.072  Sum_probs=90.7

Q ss_pred             CCCEEEEEc-C------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc-
Q 022387           96 DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-  167 (298)
Q Consensus        96 dg~~lasgs-~------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-  167 (298)
                      ++.+++.|+ .      +.+.+||..+.+......+. ...........+ +.+.+.+|.... ...+.+.++|..+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~-~~l~v~GG~~~~-~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT-RKRRYVASVSLH-DRIYVIGGYDGR-SRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS-SCCBSCEEEEET-TEEEEECCBCSS-CBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC-hhhccccEEEEC-CEEEEEcCCCCC-ccCceEEEEECCCCCC
Confidence            455666776 2      23567787776543322221 111111112223 445555543211 123678999998876 


Q ss_pred             --EEEEeecC--CceEEEEEeCCeEEEEEC-------CeEEEEEcCCCeEEEEEeccCCC-cceEEEEeCCCCeEEEEec
Q 022387          168 --CIGELSFR--SEVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANP-KGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       168 --~~~~~~~~--~~v~~v~~~~~~l~v~~~-------~~I~iwd~~~~~~i~~~~~~~~~-~~~~~~s~~~d~~~la~sG  235 (298)
                        ....-...  ..-.++....+.+.+.+.       +.+.+||+.+.+-. .+.....+ ....++..  ++.++++ |
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~-G  166 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS-MLGDMQTAREGAGLVVA--SGVIYCL-G  166 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE-EEEECSSCCBSCEEEEE--TTEEEEE-C
T ss_pred             CeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE-ECCCCCCCcccceEEEE--CCEEEEE-C
Confidence              33322211  112223333555555532       47899998765422 22221111 11122222  3366665 5


Q ss_pred             CCC-----ceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCC-----CCEEEEEECCCCc
Q 022387          236 LQK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (298)
Q Consensus       236 s~d-----g~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~D-----gt~IrIWd~~tg~  292 (298)
                      ..+     ..+.++|..+..-..+.   .....-.++.+  ++++++.|+.+     .. |.+||+.+.+
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  233 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDS  233 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCc
Confidence            443     35677887665432221   11111222223  67888888765     35 8899988764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.98  E-value=11  Score=35.91  Aligned_cols=185  Identities=7%  Similarity=-0.045  Sum_probs=104.3

Q ss_pred             CEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-C
Q 022387           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-S  176 (298)
Q Consensus        98 ~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~  176 (298)
                      .+|+.+....|+..+++.........+..-.....+++....+.+..+..      ..+.|..++.........+... .
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~------~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI------SLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCS
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC------CCCeEEEEECCCCCcEEEEeCCCC
Confidence            36666677788888888755433333211234556677776677766653      3578888888654333223222 2


Q ss_pred             ceEEEEE--eCCeEEEEEC--CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce
Q 022387          177 EVRSVKL--RRDRIIVVLE--QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (298)
Q Consensus       177 ~v~~v~~--~~~~l~v~~~--~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~  251 (298)
                      ....+++  ....+.++..  +.|.+.++..... ..+. ........+++.+. .+.++.+--...+.|...++.....
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEEEEeCCCCce
Confidence            3444554  4566766653  6899998854322 2222 21111233444432 2344442112256777777766554


Q ss_pred             EeecccccceeEEEECCCCCEEEEE-eCCCCEEEEEECCCC
Q 022387          252 KFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDG  291 (298)
Q Consensus       252 ~~~~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~tg  291 (298)
                      ..+...-...+.|++++++..|.-+ ...+. |...|+..+
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~  198 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGL  198 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSC
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCC
Confidence            4443344568999999976555444 44555 999998654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.86  E-value=6.7  Score=33.16  Aligned_cols=190  Identities=13%  Similarity=0.086  Sum_probs=90.4

Q ss_pred             cCCCCEEEEEcC-----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC---CCCCCCCeEEEEeCCC
Q 022387           94 NQDHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        94 s~dg~~lasgs~-----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~v~iWD~~~  165 (298)
                      .-++.+++.|+.     +.+.+||..+.+......+. ........... .+.+.+.+|..   +.....+.+.++|..+
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ-VPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC-cccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            345667777762     33667887776653322221 11111111122 34455555431   1001235688999988


Q ss_pred             CcEEEEeecC--CceEEEEEeCCeEEEEEC-------CeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeEEEEec
Q 022387          166 SRCIGELSFR--SEVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       166 ~~~~~~~~~~--~~v~~v~~~~~~l~v~~~-------~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~la~sG  235 (298)
                      ++....-...  ..-.++....+.+.+.+.       +.+.+||+.+.+-. .+.....+. ...+...  ++.++++ |
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~-G  175 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLTRRIGVGVAVL--NRLLYAV-G  175 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEE--TTEEEEE-C
T ss_pred             CeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEe-ECCCCCccccceEEEEE--CCEEEEE-e
Confidence            7643321111  111223333555555432       47889998765421 221111111 1122222  3366665 5


Q ss_pred             CCC-----ceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCC-----CCEEEEEECCCCc
Q 022387          236 LQK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (298)
Q Consensus       236 s~d-----g~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~D-----gt~IrIWd~~tg~  292 (298)
                      ..+     ..+.++|..+..-..+.   .....-.++.+  ++++++.|+.+     .. +.+||+.+.+
T Consensus       176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~  242 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETET  242 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCc
Confidence            443     35777887665422221   11111222333  67888888765     45 8899988764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.82  E-value=12  Score=36.11  Aligned_cols=187  Identities=16%  Similarity=0.143  Sum_probs=105.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      ..|.++....+|. |-.|+.+|+..||..+.+..  .... ....+..+.. .++ .+-+++        .+.|..+|..
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~--~~~~~~~~~i~~i~~-~~g-~lWigt--------~~Gl~~~~~~  129 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYE--QPETDFPTDVRTMAL-QGD-TLWLGA--------LNGLYTYQLQ  129 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTEEEEEETTTTEEC--CCSCCCCSCEEEEEE-ETT-EEEEEE--------TTEEEEEETT
T ss_pred             ceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEE--CcccCCCceEEEEEe-cCC-cEEEEc--------CCcceeEeCC
Confidence            4688888777774 55566789889988765321  1100 0122333322 233 344444        1358888987


Q ss_pred             CCcEEEEee----c-CCceEEEEEe-CCeEEEEECCeEEEEEcCCCeEEEEEeccCC----CcceEEEEeCCCC-eEEEE
Q 022387          165 QSRCIGELS----F-RSEVRSVKLR-RDRIIVVLEQKIFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGS-LVLVC  233 (298)
Q Consensus       165 ~~~~~~~~~----~-~~~v~~v~~~-~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~----~~~~~~~s~~~d~-~~la~  233 (298)
                      +++......    . ...|.++... ...+.+++.+.+..|+..+.+. ..+.....    ...+.++..+.++ .+.+ 
T Consensus       130 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-  207 (758)
T 3ott_A          130 SRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-  207 (758)
T ss_dssp             TCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEE-
T ss_pred             CCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEEE-
Confidence            765432201    1 2357777776 4577778887888999876553 22321111    1124455555443 3333 


Q ss_pred             ecCCCceEEEEEcCCcceEeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387          234 PGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~  292 (298)
                       |+. +-+..++...+....+.. ....|++|....+|.+.+..  ++. +.+++..+++
T Consensus       208 -gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~G-l~~~~~~~~~  262 (758)
T 3ott_A          208 -GTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT--DNG-LYVYHNDTTP  262 (758)
T ss_dssp             -EEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE--TTE-EEEECCTTSC
T ss_pred             -EEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe--CCc-eeEEecCCCc
Confidence             343 345556665554432221 23469999999999877765  345 7788876654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.73  E-value=6.7  Score=32.93  Aligned_cols=187  Identities=14%  Similarity=0.120  Sum_probs=89.9

Q ss_pred             CCCEEEEEcCC------eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387           96 DHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        96 dg~~lasgs~~------gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~  169 (298)
                      ++.+++.|+.+      .+.+||..+.+......+. ...........++ .+.+.+|.... ..-+.+.+||..+.+..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~-~iyv~GG~~~~-~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR-DRRSTLGAAVLNG-LLYAVGGFDGS-TGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETT-EEEEEEEECSS-CEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC-ccccceEEEEECC-EEEEEcCCCCC-ccCceEEEEeCCCCeEe
Confidence            67777777632      2557777776654333221 1111111122234 44444432210 01246888998887644


Q ss_pred             EEeecCC--ceEEEEEeCCeEEEEE---------CCeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeEEEEecCC
Q 022387          170 GELSFRS--EVRSVKLRRDRIIVVL---------EQKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       170 ~~~~~~~--~v~~v~~~~~~l~v~~---------~~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~la~sGs~  237 (298)
                      ..-....  .-.++....+.+.+.+         .+.+.+||+.+.+= ..+.....+. ...++..  ++.++++ |..
T Consensus       138 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~  213 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNLLYAV-GGH  213 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred             ecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcE-EECCCCccccccccEEEE--CCEEEEE-CCC
Confidence            3222211  2223333455555543         14688999876542 2222111111 1122222  2366665 544


Q ss_pred             C-----ceEEEEEcCCcceEeeccc---ccceeEEEECCCCCEEEEEeCCC-----CEEEEEECCCCc
Q 022387          238 K-----GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGT  292 (298)
Q Consensus       238 d-----g~v~i~~~~~~~~~~~~~H---~~~V~~l~fspdg~~lAt~S~Dg-----t~IrIWd~~tg~  292 (298)
                      +     ..+.++|..+..-..+...   ...-..+.+  ++++++.|+.++     . |.+||+.+.+
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  278 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLAS-VEYYNPTTDK  278 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCccccc-EEEEcCCCCe
Confidence            3     3577788776543222211   111122222  678888888664     4 7899988764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=90.53  E-value=7  Score=32.79  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=88.3

Q ss_pred             CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC--CceEEEEEeCC-eEEEEEC--CeEEEEEcC
Q 022387          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRRD-RIIVVLE--QKIFVYNFA  202 (298)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~-~l~v~~~--~~I~iwd~~  202 (298)
                      +.+..+++.++.+.+.++..      .++.|...|.. ++.++.+.+.  ...-.+++.++ .++++.+  +.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d------~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTIN------KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEE------TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEEC------CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            45778888887777776664      35788889998 8888887654  35666777654 4445543  688999885


Q ss_pred             CCe---EEEEEecc----CCC--cceEEEEeCCCCeEEEEecCCCceEEEEEcC----CcceEee-------ccccccee
Q 022387          203 DLK---LLHQIETI----ANP--KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA----SKRTKFI-------MAHDSRIA  262 (298)
Q Consensus       203 ~~~---~i~~~~~~----~~~--~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~----~~~~~~~-------~~H~~~V~  262 (298)
                      ...   .+..+...    ...  ...+++.+..+ .++++  .......+|.++    ...+..+       ..+...+.
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va--~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFF--KEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEE--EESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEE--ECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            433   22333211    111  13455554432 33332  232233443332    1112222       12345689


Q ss_pred             EEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          263 CFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       263 ~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      .|+|+|. |++++.....+. +-++|.. |+.+.
T Consensus       177 ~l~~dp~tg~lliLS~~s~~-L~~~d~~-g~~~~  208 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRA-LQEVTLV-GEVIG  208 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTE-EEEECTT-CCEEE
T ss_pred             eEEEcCCCCeEEEEECCCCe-EEEEcCC-CCEEE
Confidence            9999987 455555544444 8888855 55543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.47  E-value=7.1  Score=32.78  Aligned_cols=186  Identities=12%  Similarity=0.156  Sum_probs=88.2

Q ss_pred             CCEEEEEcC-----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387           97 HGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (298)
Q Consensus        97 g~~lasgs~-----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~  171 (298)
                      +.+++.|+.     +.+..||..+.+......+. ........... .+.+.+.+|..... .-+.+.++|..+++....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP-SRRCRAGMVYM-AGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEESCBCSSS-BCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC-cccccceEEEE-CCEEEEEeCcCCCc-cccceEEECCCCCceeeC
Confidence            445566653     23567787776543332221 11111111122 34455555432111 235688999988764432


Q ss_pred             eecCC--ceEEEEEeCCeEEEEEC-------CeEEEEEcCCCeEEEEEeccCCCcc-eEEEEeCCCCeEEEEecCCC---
Q 022387          172 LSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQK---  238 (298)
Q Consensus       172 ~~~~~--~v~~v~~~~~~l~v~~~-------~~I~iwd~~~~~~i~~~~~~~~~~~-~~~~s~~~d~~~la~sGs~d---  238 (298)
                      -....  .-.++....+.+.+.+.       +.+.+||+.+.+- ..+.....+.. ..+...  ++.++++ |..+   
T Consensus        93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~  168 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGVV--GGLLYAV-GGYDVAS  168 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEE-CCEETTT
T ss_pred             CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCceEEEE--CCEEEEE-eCCCCCC
Confidence            22211  12223333455554431       3688899876542 22222111111 112222  3366665 4432   


Q ss_pred             ----ceEEEEEcCCcceEee---cccccceeEEEECCCCCEEEEEeCCC-----CEEEEEECCCCc
Q 022387          239 ----GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGT  292 (298)
Q Consensus       239 ----g~v~i~~~~~~~~~~~---~~H~~~V~~l~fspdg~~lAt~S~Dg-----t~IrIWd~~tg~  292 (298)
                          ..+.++|..+..-..+   ........++.+  ++++++.|+.++     . +.+||+.+.+
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~  231 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNA  231 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTE
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCC
Confidence                3467788766542221   111111222233  678888888654     5 8899988764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.28  E-value=8.3  Score=33.26  Aligned_cols=135  Identities=11%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             CeEEEEeCCCCcEEEEeecC--Cce-EEEEEeCCeEEEEE--------CCeEEEEEc--CCCeEEEEEeccCCC---cce
Q 022387          156 NKVMIWDDHQSRCIGELSFR--SEV-RSVKLRRDRIIVVL--------EQKIFVYNF--ADLKLLHQIETIANP---KGL  219 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~--~~v-~~v~~~~~~l~v~~--------~~~I~iwd~--~~~~~i~~~~~~~~~---~~~  219 (298)
                      +.+.++|..+.+....-...  ... .++....+.+.+..        ...+.+||+  .+.+ -..+.....+   ...
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccc
Confidence            67999999887644322222  122 34444556565543        236777877  3322 1222211111   122


Q ss_pred             EEEEeCCCCeEEEEecCCC----------------------ceEEEEEcCCcceE---eecccccceeEEEECCCCCEEE
Q 022387          220 CAVSQGVGSLVLVCPGLQK----------------------GQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLA  274 (298)
Q Consensus       220 ~~~s~~~d~~~la~sGs~d----------------------g~v~i~~~~~~~~~---~~~~H~~~V~~l~fspdg~~lA  274 (298)
                      .++..+  +.++++ |..+                      ..+.++|..+..-.   .+......-.++  .-++++++
T Consensus       247 ~~~~~~--~~iyv~-GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v  321 (357)
T 2uvk_A          247 FAGISN--DSLIFA-GGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLI  321 (357)
T ss_dssp             EEEEET--TEEEEE-CCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEE
T ss_pred             eEEEEC--CEEEEE-cCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEE
Confidence            233333  366665 4421                      24566777654321   222211112222  24788889


Q ss_pred             EEeCCC-----CEEEEEECCCCcEEEe
Q 022387          275 TSSTKG-----TLVRIFNTLDGTLLQE  296 (298)
Q Consensus       275 t~S~Dg-----t~IrIWd~~tg~~l~~  296 (298)
                      .|+.++     ..|.++++++++.+..
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            998654     1255669988887643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.24  E-value=7.4  Score=32.61  Aligned_cols=188  Identities=9%  Similarity=0.062  Sum_probs=92.9

Q ss_pred             CCCEEEEEcCC------eEEEEEcCCCc---eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387           96 DHGCFAAGTDH------GFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (298)
Q Consensus        96 dg~~lasgs~~------gi~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~  166 (298)
                      ++++++.|+.+      .+.+||..+..   ......+. ...........+ +.+.+.+|..... ..+.+.++|..+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~~~~~~~~-~~lyv~GG~~~~~-~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGLAGATTLG-DMIYVSGGFDGSR-RHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBSCEEEEET-TEEEEECCBCSSC-BCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccceeEEEEC-CEEEEEcccCCCc-ccceEEEEcCCCC
Confidence            56777777632      36678877766   43332221 111111111223 4455555432111 2357899999887


Q ss_pred             cEEEEeecC--CceEEEEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeEEEEecC
Q 022387          167 RCIGELSFR--SEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       167 ~~~~~~~~~--~~v~~v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~la~sGs  236 (298)
                      +....-...  ..-.++....+.+.+.+       .+.+.+||+.+.+= ..+.....+. ...++..+  +.++++ |.
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~~--~~i~v~-GG  214 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALLN--DHIYVV-GG  214 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEET--TEEEEE-CC
T ss_pred             eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEEC--CEEEEE-eC
Confidence            644322222  11222333355555553       25789999876543 2222211111 11222222  366665 54


Q ss_pred             CC-----ceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCC----CEEEEEECCCCc
Q 022387          237 QK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKG----TLVRIFNTLDGT  292 (298)
Q Consensus       237 ~d-----g~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dg----t~IrIWd~~tg~  292 (298)
                      .+     ..+.++|..+..-..+.   .......++.+  ++++++.|+.++    ..|.+||+++.+
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            43     45777888765433221   11111222333  678888888763    237889988764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.02  E-value=9.6  Score=33.62  Aligned_cols=99  Identities=9%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             eEEEEE----CCeEEEEEcCC--C--eEEEEEeccCCCcceEEEEeCCCCeEEEEecC-----------------CCceE
Q 022387          187 RIIVVL----EQKIFVYNFAD--L--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGL-----------------QKGQV  241 (298)
Q Consensus       187 ~l~v~~----~~~I~iwd~~~--~--~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs-----------------~dg~v  241 (298)
                      +++++.    ..+|.+|++..  .  ..+.++.. ..-...-.+..++++.+++. ..                 ..|.|
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt-~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYAT-NDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEE-ESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEec-CCcEeCCcccccchhhccCCccEE
Confidence            455653    35777877732  2  22333332 11222334445556677663 22                 12444


Q ss_pred             EEEEcCCcceEeecccccceeEEEECCCCCEEEEEe-CCCCEEEEEECCC
Q 022387          242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD  290 (298)
Q Consensus       242 ~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S-~Dgt~IrIWd~~t  290 (298)
                      ..++-  +.+..+...-...+.|+|||||++|..+. ..+. |..|++..
T Consensus       206 yr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~  252 (355)
T 3sre_A          206 TYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHA  252 (355)
T ss_dssp             EEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECT
T ss_pred             EEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECC
Confidence            44443  33433333445689999999997766664 4556 99999863

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.92  E-value=10  Score=32.51  Aligned_cols=186  Identities=11%  Similarity=0.040  Sum_probs=90.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEee-ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE-EEEeC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV-MIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v-~iWD~  163 (298)
                      ..+..|.+.+++..++++...+  ||........+.... .....+..+.+..+...++...        .+.+ +-+|.
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~G~~~~S~d~  191 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS--------RGSFYSTWEP  191 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET--------TSSEEEEECT
T ss_pred             CCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC--------CCcEEEEeCC
Confidence            3578888888888888776544  333332222222221 0123444455555554444332        2333 33442


Q ss_pred             --CCCcEEEEeecCCceEEEEEeCC-eEEEEE-CCeEEEEEcCCCeEEEEEecc--CCCcceEEEEeCCCCeEEEEecCC
Q 022387          164 --HQSRCIGELSFRSEVRSVKLRRD-RIIVVL-EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       164 --~~~~~~~~~~~~~~v~~v~~~~~-~l~v~~-~~~I~iwd~~~~~~i~~~~~~--~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                        .+-+.+ .......+..+.+.++ .+.++. ++.+++.+...++....+...  .......++...+++.++++ | .
T Consensus       192 gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g-~  268 (327)
T 2xbg_A          192 GQTAWEPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-G-G  268 (327)
T ss_dssp             TCSSCEEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-E-S
T ss_pred             CCCceeEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-e-C
Confidence              122222 1122345667777553 444444 467766642223332222211  11123445555555677764 3 4


Q ss_pred             CceEEEEEcCCcceE-eec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          238 KGQVRVEHYASKRTK-FIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       238 dg~v~i~~~~~~~~~-~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +|.|.+ ..+..... .+.   .+...+.+|.|.++++ ++.++.+|+ |.-++
T Consensus       269 ~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~-i~~~~  319 (327)
T 2xbg_A          269 AGALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI-LLRYV  319 (327)
T ss_dssp             TTCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE-EEEEC
T ss_pred             CCeEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce-EEEEc
Confidence            676643 33333222 222   2346789999986665 445556898 65554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.79  E-value=9.9  Score=32.08  Aligned_cols=188  Identities=12%  Similarity=0.046  Sum_probs=89.0

Q ss_pred             CCCEEEEEcC----C------eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           96 DHGCFAAGTD----H------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        96 dg~~lasgs~----~------gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ++++++.|+.    +      .+.+||..+.+......+. ...........+ +.+.+.+|..... ..+.+.++|..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~-~~iyv~GG~~~~~-~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS-VPRNRIGVGVID-GHIYAVGGSHGCI-HHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS-SCCBTCEEEEET-TEEEEECCEETTE-ECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC-cCccccEEEEEC-CEEEEEcCCCCCc-ccccEEEECCCC
Confidence            5677777664    2      2456777666543322221 111111111223 3455555422110 135688999988


Q ss_pred             CcEEEEeecCC--ceEEEEEeCCeEEEEEC-------CeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeEEEEec
Q 022387          166 SRCIGELSFRS--EVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       166 ~~~~~~~~~~~--~v~~v~~~~~~l~v~~~-------~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~la~sG  235 (298)
                      .+....-....  .-.++....+.+.+.+.       +.+.+||+.+.+= ..+.....+. ...++..  ++.++++ |
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~-G  222 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAA-G  222 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEE-C
T ss_pred             CeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEE-e
Confidence            76433222211  12223333555555532       4688999876542 1222111111 1122222  3366665 5


Q ss_pred             CCC-----ceEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCC----CEEEEEECCCCc
Q 022387          236 LQK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKG----TLVRIFNTLDGT  292 (298)
Q Consensus       236 s~d-----g~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dg----t~IrIWd~~tg~  292 (298)
                      ..+     ..+.++|..+..-..+.   ........+.+  ++++++.|+.++    ..|.+||+.+.+
T Consensus       223 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            443     45777887765432221   11111222222  678888887653    127889988764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.17  E-value=1.8  Score=38.18  Aligned_cols=108  Identities=13%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             EEEEE-CCeEEEEEcCCCeEEEEEeccC-CCcceEEEE-e--CCCCeEEEEecCCCceEEEEEcCCcceE-eecc----c
Q 022387          188 IIVVL-EQKIFVYNFADLKLLHQIETIA-NPKGLCAVS-Q--GVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----H  257 (298)
Q Consensus       188 l~v~~-~~~I~iwd~~~~~~i~~~~~~~-~~~~~~~~s-~--~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~----H  257 (298)
                      +++.+ ++.|.-+|..+++.+.+++... .+.  +... +  ..++..+++..+.||.|..++...+..+ .+..    .
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            34444 6899999999999999988651 121  1111 0  0123444431257888877776654322 1110    1


Q ss_pred             ccceeE---EEE-C----CCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387          258 DSRIAC---FAL-T----QDGQLLATSSTKGTLVRIFNTLDGTLLQEGC  298 (298)
Q Consensus       258 ~~~V~~---l~f-s----pdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~  298 (298)
                      .+++..   ..+ .    -.+..+.+|+.+|+ +.-.|+++|+.+.+|.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEe
Confidence            122221   000 0    03457788888998 9999999999998873

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.63  E-value=0.85  Score=46.04  Aligned_cols=37  Identities=8%  Similarity=0.078  Sum_probs=33.3

Q ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .|.+++..++..++.|-+.|++ +|||++.+|+++.++
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeee
Confidence            5778888889999999999999 999999999998764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=85.19  E-value=17  Score=31.10  Aligned_cols=183  Identities=13%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEe-ee---cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FE---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+.+|.|..++..+|+|...++ +...+-++ .+... ..   ....+..+.+  +++.+.+++       .++.|..-
T Consensus        36 ~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~--~~~~~~~~g-------~~g~i~~S  104 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVGVNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSF--QGNEGWIVG-------EPPIMLHT  104 (327)
T ss_dssp             SCEEEEEESSSSCEEEEETTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEE--ETTEEEEEE-------ETTEEEEE
T ss_pred             CcEEEEEECCCCcEEEEcCCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEe--cCCeEEEEE-------CCCeEEEE
Confidence            47999999988888887754443 33333322 11111 10   0123334443  334444444       23444432


Q ss_pred             eCCCCcEEEEee----cCCceEEEEEe-CCeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          162 DDHQSRCIGELS----FRSEVRSVKLR-RDRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       162 D~~~~~~~~~~~----~~~~v~~v~~~-~~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                       ...++.-..+.    ....+..+.+. +..++++.. +.|  |...+ ++.-..+... .......+...+++.++++ 
T Consensus       105 -~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~-  179 (327)
T 2xbg_A          105 -TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV-  179 (327)
T ss_dssp             -SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE-
T ss_pred             -CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE-
Confidence             22233222222    12345566653 455555553 433  22222 2222222221 1223445555566677774 


Q ss_pred             cCCCceEEE-EEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          235 GLQKGQVRV-EHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       235 Gs~dg~v~i-~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      | .+|.+.. +|-....-. .-..+...+..|++++++++++.+ .+|. +++.+
T Consensus       180 g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~-~~~s~  231 (327)
T 2xbg_A          180 S-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGK-IAFSD  231 (327)
T ss_dssp             E-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTE-EEEEE
T ss_pred             E-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe-CCce-EEEec
Confidence            4 3455544 553222211 112345678999999999877655 4676 76664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=85.08  E-value=22  Score=32.32  Aligned_cols=105  Identities=17%  Similarity=0.128  Sum_probs=67.8

Q ss_pred             EEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee---cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        91 v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      .....+|+-|+.+-++-+|.=++.+..........   ....+..+.++++++++|+.+        +.+|.|-.+-.+.
T Consensus        26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--------~~~V~Vv~LP~~~   97 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--------DNEIFVMEVPWGY   97 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--------SSEEEEEECCTTC
T ss_pred             EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--------CCeEEEEEecCcc
Confidence            34456788788877777776666543322223321   023567788899999999987        4778888765221


Q ss_pred             ------------EEEEeec-------CCceEEEEEeCC-----eEEEEE-CCeEEEEEcCC
Q 022387          168 ------------CIGELSF-------RSEVRSVKLRRD-----RIIVVL-EQKIFVYNFAD  203 (298)
Q Consensus       168 ------------~~~~~~~-------~~~v~~v~~~~~-----~l~v~~-~~~I~iwd~~~  203 (298)
                                  ..+.+..       ..+|..+.|||-     .+++.+ ++.|++||+..
T Consensus        98 ~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           98 SNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             SCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                        1122332       346999999973     566666 47999999964

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.85  E-value=17  Score=30.69  Aligned_cols=133  Identities=15%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CCeEEEEeCCCCcEEEEeecCC--ceEEEEEeCCeEEEEEC--------CeEEEEEcCCCeEEEEEeccCCCc-ceEEEE
Q 022387          155 LNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPK-GLCAVS  223 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~l~v~~~--------~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s  223 (298)
                      .+.+.++|..+++....-....  .-.++....+.+.+.+.        +.+.+||+.+.+= ..+.....+. ...+..
T Consensus       116 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~  194 (315)
T 4asc_A          116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATV  194 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEE
T ss_pred             cceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE-EECCCCCCchhceEEEE
Confidence            4678999998875433212211  12233334555555432        4789999876542 1222111111 112222


Q ss_pred             eCCCCeEEEEecCCCc----eEEEEEcCCcceEeec---ccccceeEEEECCCCCEEEEEeCCC-------------CEE
Q 022387          224 QGVGSLVLVCPGLQKG----QVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKG-------------TLV  283 (298)
Q Consensus       224 ~~~d~~~la~sGs~dg----~v~i~~~~~~~~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dg-------------t~I  283 (298)
                      .  ++.++++.|..+.    .+.++|..+..-..+.   ........+.+  ++++++.|+.++             ..|
T Consensus       195 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v  270 (315)
T 4asc_A          195 H--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDI  270 (315)
T ss_dssp             E--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             E--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcE
Confidence            2  2366665343322    4666777665422221   11111222333  678888887642             126


Q ss_pred             EEEECCCCc
Q 022387          284 RIFNTLDGT  292 (298)
Q Consensus       284 rIWd~~tg~  292 (298)
                      .+||+.+.+
T Consensus       271 ~~yd~~~~~  279 (315)
T 4asc_A          271 WRYNEEEKK  279 (315)
T ss_dssp             EEEETTTTE
T ss_pred             EEecCCCCh
Confidence            788887653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.72  E-value=0.71  Score=47.53  Aligned_cols=37  Identities=8%  Similarity=0.078  Sum_probs=32.5

Q ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       260 ~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+.+++..++.+++.|-+.|++ +|||++.+|+|+.++
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~-LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCE-EEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCE-EEEEECCCCCeEEee
Confidence            4566777788899999999999 999999999999874

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.18  E-value=1.4  Score=42.68  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             cceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       259 ~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ..|.++.+  +..+|+|-+.|.+ +|||++++++++.++
T Consensus       222 ~~Is~~~~--~~~fLftL~~Dh~-LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          222 SVISCKLF--HERYLIVLTQNCH-LKIWDLTSFTLIQDY  257 (729)
T ss_dssp             CEEEEEEE--TTTEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred             ceEEEecc--CCcEEEEEEcCCe-EEEEEcCCCceEEee
Confidence            45777666  4689999999999 999999999998764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=82.34  E-value=24  Score=30.62  Aligned_cols=136  Identities=15%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc--EEEEee----cCCceEEEEEeCC-----eEEEEEC-----
Q 022387          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS----FRSEVRSVKLRRD-----RIIVVLE-----  193 (298)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~--~~~~~~----~~~~v~~v~~~~~-----~l~v~~~-----  193 (298)
                      ...+.+.++++++ ++.       .++.|++++  .++  .+..+.    .......++++++     .+.++..     
T Consensus        33 P~~ia~~pdG~l~-V~e-------~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           33 PWALAFLPDGGML-IAE-------RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             EEEEEECTTSCEE-EEE-------TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             ceEEEEcCCCeEE-EEe-------CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            4456666777633 333       347888888  333  222222    1235678999987     6666643     


Q ss_pred             --CeEEEEEcCCCe-----E-EEEEec---cCCCcceEEEEeCCCCeEEEEecCC------------CceEEEEEcCCc-
Q 022387          194 --QKIFVYNFADLK-----L-LHQIET---IANPKGLCAVSQGVGSLVLVCPGLQ------------KGQVRVEHYASK-  249 (298)
Q Consensus       194 --~~I~iwd~~~~~-----~-i~~~~~---~~~~~~~~~~s~~~d~~~la~sGs~------------dg~v~i~~~~~~-  249 (298)
                        +.|..|+....+     . +..+..   ..+....++|  ++|+.++++.|..            .|.|.-.+.+.+ 
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~--~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAF--GPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEE--CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEE--CCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence              578888876431     1 122331   1112234444  4455666644432            244444444331 


Q ss_pred             ------------ceEe-ecccccceeEEEECC-CCCEEEEEeC
Q 022387          250 ------------RTKF-IMAHDSRIACFALTQ-DGQLLATSST  278 (298)
Q Consensus       250 ------------~~~~-~~~H~~~V~~l~fsp-dg~~lAt~S~  278 (298)
                                  .... ..+| .....|+|+| +|.++++-..
T Consensus       181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC
T ss_pred             CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC
Confidence                        1111 1223 3478899999 7887776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=80.19  E-value=36  Score=31.21  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      +.-.+|..+.||-=..+.++|||+++..++....+  ..++..+.|. +.+.+++++        +..|..|++..
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~--~e~VvfWkWi-s~~~l~lVT--------~taVyHWsi~~  134 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM--TDDVTFWKWI-SLNTVALVT--------DNAVYHWSMEG  134 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC--SSCCCEEEEE-ETTEEEEEC--------SSEEEEEESSS
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec--CCCceEEEec-CCCeEEEEc--------CCeeEEecccC
Confidence            45578888888877778899999999988877776  4567777775 456778877        46688888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI 213
             +WD  +  C    +   S++ ++    +         +    +++    + L      
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL 272
               G+ +VS      +L+  G       V       R   +  HD+R++C  +T DG  
Sbjct: 268 NIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 273 LATSSTKGTLVRIFN 287
           +AT S     ++I+N
Sbjct: 327 VATGSWDSF-LKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 5/138 (3%)

Query: 150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
           + ++ +  +    +     I E +     +S K     +    ++ I +++ +    L  
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ 268
           +    N         G G  +L         +RV  Y +KR  K + AH+  +      +
Sbjct: 243 LVGHDNWVRGVLFHSG-GKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 269 DGQLLATSSTKGTLVRIF 286
               + T S   T V+++
Sbjct: 300 TAPYVVTGSVDQT-VKVW 316

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295
           H+  I   + + DG+ L ++  +G  +  ++   G   +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNR 48

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
             +         + F     S +    ++ D + + T S       ++  +
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVYEVI 336

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.82
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.78
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.6
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.55
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.52
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.42
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.38
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.1
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.7
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.34
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.3
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.14
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.87
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.77
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.48
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.44
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.13
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.91
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.74
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.18
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	84.87
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	82.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.91

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.7e-29  Score=220.44  Aligned_cols=208  Identities=14%  Similarity=0.135  Sum_probs=169.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ...|...|++++|+|||++||+|+.|+ ++||++...+......+. |.+.+..+.+.+++..+++++.+     .++.+
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-----~~~~~  128 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-----RERFG  128 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-----SSCSE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-----ccccc
Confidence            356788999999999999999999865 889999887755444332 57788999999988888888754     35779


Q ss_pred             EEEeCCCCcEEEEeecC-CceEEEEEeCC--e-EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          159 MIWDDHQSRCIGELSFR-SEVRSVKLRRD--R-IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~-l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +|||+++++....+..+ ..|.+++|+++  . ++++. ++.|++||+++.+.+..+..|..++..+.+++  ++.++++
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p--~~~~l~~  206 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFAS  206 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCc--ccccccc
Confidence            99999998887777655 47999999864  3 33344 48999999999999999888877766666555  5578874


Q ss_pred             ecCCCceEEEEEcCCcce-E-------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASKRT-K-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~~-~-------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       |+.||.|++|+...... .       ...+|...|++|+|+|+|++|||||.||+ |||||++++++++++
T Consensus       207 -~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         207 -TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTI  276 (311)
T ss_dssp             -EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEE
Confidence             89999999999876532 2       23579999999999999999999999999 999999999998875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=6.9e-28  Score=210.33  Aligned_cols=204  Identities=15%  Similarity=0.195  Sum_probs=164.4

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC--------
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP--------  151 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  151 (298)
                      ..+|.+.|++|+|+||+++||+|+.|| |+|||+.+.+.+..... |...+..+.+.+++..+++++.....        
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeecccceeeccccccc
Confidence            468999999999999999999999866 88999999888766665 67788888888887777665432110        


Q ss_pred             ------------------------------------------------------------------------CCCCCeEE
Q 022387          152 ------------------------------------------------------------------------QYPLNKVM  159 (298)
Q Consensus       152 ------------------------------------------------------------------------~~~d~~v~  159 (298)
                                                                                              ...|+.|+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             CSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence                                                                                    01257899


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +||+++++.+..+..+ ..|.+++|+++  .++++. ++.|++||+...+.+..+........+..+.+++++.+|++ |
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g  288 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-G  288 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE-E
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE-E
Confidence            9999999888887754 57999999875  455544 58999999999988887765555555556666667788884 9


Q ss_pred             CCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          236 LQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       236 s~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +.||.|++||..... +.++.+|.++|++|+|+|+|++|||||.||+ |+|||
T Consensus       289 ~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~-v~iWd  340 (340)
T d1tbga_         289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN  340 (340)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC-EEEEC
T ss_pred             ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE-EEEeC
Confidence            999999999987654 5689999999999999999999999999999 99997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.5e-27  Score=202.59  Aligned_cols=202  Identities=13%  Similarity=0.189  Sum_probs=149.1

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC---------
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD---------  150 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  150 (298)
                      ..+|..+|++|+|+|++++||+|+.|+ |+|||+++.+.+..... |.+.+..+.+.+++..++.......         
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeeccccccccccccccccccccccc
Confidence            357889999999999999999999866 89999998877666554 5667777777666655554332211         


Q ss_pred             --------------------------CCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC-----------------
Q 022387          151 --------------------------PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD-----------------  186 (298)
Q Consensus       151 --------------------------~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~-----------------  186 (298)
                                                ....|+.+++||+++++.+..+..+ ..+.++.++++                 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~  171 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  171 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence                                      0114688899998887776665533 34445554432                 


Q ss_pred             -----------------------------------------------eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc
Q 022387          187 -----------------------------------------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKG  218 (298)
Q Consensus       187 -----------------------------------------------~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~  218 (298)
                                                                     .+.++. ++.|++||+.+++++.++..|..++.
T Consensus       172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR  251 (317)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred             eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence                                                           122222 35677788777777788877776665


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      .+++++  ++.+|+ +|+.||.|++|++.+.. +.++.+|...|++|+|+|++++|||||.||+ |||||
T Consensus       252 ~~~~~~--~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~-i~iWd  317 (317)
T d1vyhc1         252 GVLFHS--GGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWE  317 (317)
T ss_dssp             EEEECS--SSSCEE-EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE-EEEEC
T ss_pred             EEEECC--CCCEEE-EEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEeC
Confidence            566555  457777 48999999999997654 5689999999999999999999999999999 99997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-25  Score=197.09  Aligned_cols=204  Identities=9%  Similarity=0.150  Sum_probs=163.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|++++|+|||++|++|+.++ +++|++..........+. |...+..+.+.++...+++++       .++.|+
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~d~~i~  166 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIA  166 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccc-------cccccc
Confidence            45777899999999999999998865 889998765543333332 566777778888888888777       678999


Q ss_pred             EEeCCCCcEEEEeec-CCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          160 IWDDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       160 iWD~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      +||+.+++....... ...|.+++|+++  .++++. ++.|++||+++++.++.+. +..++.  ++.+++++.++++ |
T Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~--~l~~~~~~~~l~~-~  242 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF--SLGYCPTGEWLAV-G  242 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE--EEEECTTSSEEEE-E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceE--EEEEcccccccce-e
Confidence            999999988776664 458999999864  455554 5899999999999887765 334444  4445556678874 8


Q ss_pred             CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.||.|++|+...........|...|++|+|+|+|++||+++.||+ |+|||+.+++++.++
T Consensus       243 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQS  303 (337)
T ss_dssp             ETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             ccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEc
Confidence            9999999999998888888899999999999999999999999999 999999999988654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.2e-25  Score=201.67  Aligned_cols=202  Identities=13%  Similarity=0.101  Sum_probs=156.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      ..+|+|++|+|||++||+|+.++ |+||+.+..+......+. |.+.+..++++++++++++++       .|++|+|||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-------~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-------TDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-------TTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-------CCCeEEEEe
Confidence            45899999999999999999866 889999887654444443 678899999999999998887       689999999


Q ss_pred             CCCCcEEEEee---cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEE----eccCCCcceEEEEeCCCCeEEE
Q 022387          163 DHQSRCIGELS---FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI----ETIANPKGLCAVSQGVGSLVLV  232 (298)
Q Consensus       163 ~~~~~~~~~~~---~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~----~~~~~~~~~~~~s~~~d~~~la  232 (298)
                      +.++.....+.   +...|.++.|+++  .++++. ++.|++|++........+    ..|...+  .++.+++++.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v--~~v~~~p~~~~l~  157 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV--LSLDWHPNSVLLA  157 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE--EEEEECTTSSEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc--cccccccccccee
Confidence            98876554443   3457999999874  455554 579999998544322222    2233444  4455566678888


Q ss_pred             EecCCCceEEEEEcCCc-------------------ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          233 CPGLQKGQVRVEHYASK-------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       233 ~sGs~dg~v~i~~~~~~-------------------~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                       +|+.||.|++|+....                   .+.....|...|.+++|+|+|++||+++.|++ |+|||+.++++
T Consensus       158 -s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~  235 (371)
T d1k8kc_         158 -AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMA  235 (371)
T ss_dssp             -EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTE
T ss_pred             -ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccc
Confidence             5999999999996532                   13356789999999999999999999999999 99999999998


Q ss_pred             EEec
Q 022387          294 LQEG  297 (298)
Q Consensus       294 l~~~  297 (298)
                      +.++
T Consensus       236 ~~~~  239 (371)
T d1k8kc_         236 VATL  239 (371)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            8764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-25  Score=198.82  Aligned_cols=205  Identities=15%  Similarity=0.134  Sum_probs=149.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEee-----------------ecCCceEEEEEecCCCEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF-----------------ERGGGIGVVEMLFRCNILAL  144 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  144 (298)
                      ..|.+.|+||+|+|||++||+|+++.|+||++.+.+.+.....                 .|...+..++++++++.+++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            3588899999999999999999988899999988766544321                 03445778888888888888


Q ss_pred             EeCCCCCCCCCCeEEEEeCCCCcEEEEeec-CCceEEEEEeCC-------------------------------------
Q 022387          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRD-------------------------------------  186 (298)
Q Consensus       145 ~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~-~~~v~~v~~~~~-------------------------------------  186 (298)
                      ++       .|++|++||...++.+..+.. ...|.++.++++                                     
T Consensus       139 ~~-------~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         139 GA-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EE-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             cc-------cccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            77       678999999888776665543 235555554432                                     


Q ss_pred             -------eEEEEE-CCeEEEEEcCCCeEEEEEec-------cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-
Q 022387          187 -------RIIVVL-EQKIFVYNFADLKLLHQIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-  250 (298)
Q Consensus       187 -------~l~v~~-~~~I~iwd~~~~~~i~~~~~-------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-  250 (298)
                             .++++. ++.|++||+.+++.+.++..       |...+  .++.+++++.+|+ +|+.||.|++|++.... 
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~-s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV--YSVVFTRDGQSVV-SGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE--EEEEECTTSSEEE-EEETTSEEEEEEC-----
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE--EEEEECCCCCEEE-EEECCCcEEEEeccCCcc
Confidence                   232222 35677777766666555532       22333  3445555668887 48999999999976421 


Q ss_pred             ------------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          251 ------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       251 ------------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                                  ......|...|++++|+|+|++||+|+.||+ |+|||++++++++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l  346 (388)
T d1erja_         289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLML  346 (388)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             ccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEE
Confidence                        2356678999999999999999999999999 999999999998765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-25  Score=197.87  Aligned_cols=205  Identities=15%  Similarity=0.171  Sum_probs=163.3

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCce---EEEEee-ecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  156 (298)
                      ...|...|++|+|+|+|++||+|+++.|+|||+...+.   ...... .|.+.+..++++++++.+++++       .|+
T Consensus        47 ~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~-------~dg  119 (337)
T d1gxra_          47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-------EAS  119 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-------SSS
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee-------ccc
Confidence            34688899999999999999999987799999975432   222221 2567788999999999988877       689


Q ss_pred             eEEEEeCCCC--cEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387          157 KVMIWDDHQS--RCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       157 ~v~iWD~~~~--~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~  230 (298)
                      +|++||+...  +....+..+ ..+..+.++++  .++++. ++.|++|++.+.++......|...+..++++++  +..
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~  197 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND--GTK  197 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT--SSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence            9999998754  344455444 47888889875  344444 479999999999998888888777766666554  467


Q ss_pred             EEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +++ |+.||.|++|++..........|...|.+++|+|++++|++|+.|+. |+|||+++++++..
T Consensus       198 ~~~-~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~  261 (337)
T d1gxra_         198 LWT-GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQL  261 (337)
T ss_dssp             EEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEE
T ss_pred             ccc-ccccccccccccccceeecccccccceEEEEEcccccccceeccccc-cccccccccccccc
Confidence            774 89999999999988766655678999999999999999999999999 99999999887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=2e-25  Score=196.30  Aligned_cols=203  Identities=15%  Similarity=0.114  Sum_probs=166.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      +++.+..++++|+|+.||.+.++.+.+|++++......... |.+.+.++.++++++++++++       .|++|+|||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~~latg~-------~dg~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGD-------VHGNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEE-------TTSEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCCeEeccc-------cCceEeeeee
Confidence            33456678999999999999888899999988766544433 678999999999999998887       7899999999


Q ss_pred             CCCcEE--EEee-cCCceEEEEEeCC--eEEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          164 HQSRCI--GELS-FRSEVRSVKLRRD--RIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       164 ~~~~~~--~~~~-~~~~v~~v~~~~~--~l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      .+++..  ..+. +...|.++.|+++  .++++.+   ..+++|++.+++.+.++..|...+..++|++++  .+++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~--~~~l~sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR--PFRIISG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS--SCEEEEE
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccc--eeeeccc
Confidence            987644  3344 3468999999975  4555554   469999999999888888888877777776654  5433369


Q ss_pred             CCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.||.|++|+...... ..+..|...|++++|+|++++||+++.|+. |+|||+.+++.+.+|
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVF  227 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-ccccccccccccccc
Confidence            9999999999987654 478899999999999999999999999999 999999999887665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=7.7e-25  Score=189.26  Aligned_cols=202  Identities=15%  Similarity=0.091  Sum_probs=145.7

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      +.++|...|++++|+|||++||+|+.|+ |+|||+++.+......-.|...+..+.+.+++..+ +++       .|+++
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~-------~d~~v   78 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVS-------WDDHL   78 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEE-------TTTEE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-ccc-------ceeeE
Confidence            4578999999999999999999999866 88999998776544322256678888888777644 444       46889


Q ss_pred             EEEeCCCCcE-----E------------------------------------EEeecCCceEEEEEeCC--eEEEEE-CC
Q 022387          159 MIWDDHQSRC-----I------------------------------------GELSFRSEVRSVKLRRD--RIIVVL-EQ  194 (298)
Q Consensus       159 ~iWD~~~~~~-----~------------------------------------~~~~~~~~v~~v~~~~~--~l~v~~-~~  194 (298)
                      ++|+......     +                                    ........+.+++++++  .++++. ++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998543210     0                                    00011223455666654  444444 58


Q ss_pred             eEEEEEcCCCeEEEE-EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce----EeecccccceeEEEECCC
Q 022387          195 KIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQD  269 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~-~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~----~~~~~H~~~V~~l~fspd  269 (298)
                      .|++||+.+.+.... ...|...+..+++  ++++.++++ |+.||.|++|+......    ..+.+|...|++++|+|+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  235 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAF--SNNGAFLVA-TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  235 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEE--CTTSSEEEE-EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            999999987765432 2345555555555  455678874 89999999999876432    357789999999999999


Q ss_pred             CCEEEEEeCCCCEEEEEECCCCcE
Q 022387          270 GQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      |++||+|+.||+ |+|||+++++.
T Consensus       236 ~~~l~sgs~dg~-i~iwd~~~~~~  258 (299)
T d1nr0a2         236 NVRLATGSLDNS-VIVWNMNKPSD  258 (299)
T ss_dssp             SSEEEEEETTSC-EEEEETTCTTS
T ss_pred             ccceEEEcCCCE-EEEEECCCCCc
Confidence            999999999999 99999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.5e-24  Score=191.30  Aligned_cols=205  Identities=16%  Similarity=0.174  Sum_probs=157.8

Q ss_pred             CCCeEEEEEcC--CCCEEEEEcCCe-EEEEEcCCCceEEEE------ee-ecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387           85 PPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRR------DF-ERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (298)
Q Consensus        85 ~~~V~~v~fs~--dg~~lasgs~~g-i~vw~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (298)
                      ...|++++|+|  +|.+||+|+.|| |+||++...+.....      .+ .|.+.+..+.+.+++..+++++++     .
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~-----~  137 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-----R  137 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-----S
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-----c
Confidence            46899999998  678999999865 889998653321111      11 156778889999999998888765     4


Q ss_pred             CCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--e-EEEEE-CCeEEEEEcCCCeEEEEEeccC---CCcceEEEEeCC
Q 022387          155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--R-IIVVL-EQKIFVYNFADLKLLHQIETIA---NPKGLCAVSQGV  226 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~-l~v~~-~~~I~iwd~~~~~~i~~~~~~~---~~~~~~~~s~~~  226 (298)
                      ++.+++|+.++++.+..+..+ ..|.++.|+++  . ++++. ++.|++||+...+....+..+.   ..+.+++|+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence            678999999999998888754 58999999864  3 44444 5899999999888877776533   334445555432


Q ss_pred             CCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEEC---CCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fs---pdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       +.+++ +|+.||.|++||..+.. +.++.+|..+|..+.|+   |||++||++|.|++ |||||+++++++++|
T Consensus       218 -~~~l~-s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         218 -GEFVI-TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKW  289 (325)
T ss_dssp             -CCEEE-EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             -ceecc-ccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEE
Confidence             35565 58999999999987765 45888999888777776   78999999999999 999999999998875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.4e-23  Score=178.19  Aligned_cols=208  Identities=10%  Similarity=0.057  Sum_probs=134.8

Q ss_pred             ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceE--EEEeeecCCceEEEEEecCCC-EEEEEeCCCCCCCCC
Q 022387           80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPL  155 (298)
Q Consensus        80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d  155 (298)
                      +...|+..|++|+|+|||++||+|+.|+ |+|||++.....  ....+.|.+.+..+++..+.. .+++++       .|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~-------~d   78 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-------VQ   78 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-------TT
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc-------cc
Confidence            3467888999999999999999999765 889999765432  222223688899999887655 455554       57


Q ss_pred             CeEEEEeCCCCcEEEEeecCC-c-e--------------------------------------------------EEEEE
Q 022387          156 NKVMIWDDHQSRCIGELSFRS-E-V--------------------------------------------------RSVKL  183 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~~~~~-~-v--------------------------------------------------~~v~~  183 (298)
                      ++|++|+...+.......... . .                                                  ..+..
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            899999987654433322111 0 0                                                  01111


Q ss_pred             eCCeEEEEE-CCeEEEEEcCCCeEEEEEec---cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc---------
Q 022387          184 RRDRIIVVL-EQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------  250 (298)
Q Consensus       184 ~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~---~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~---------  250 (298)
                      ....++.+. ++.|++||+...+.......   ........... ..++..++ .++.||.+.+|++....         
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-PKEQEGYA-CSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-SGGGCEEE-EEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEee-cCCCCEEE-eecCCCeEEEEEecCCcceeeccccc
Confidence            222333333 46777777754433222221   11111222222 22335555 48999999998875321         


Q ss_pred             -e------EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          251 -T------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       251 -~------~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                       .      .....|...|++|+|+|++++|||||.||+ |+|||++++++++++
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEEC
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCCcEEEEe
Confidence             0      012456778999999999999999999999 999999999999876

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-22  Score=183.76  Aligned_cols=117  Identities=14%  Similarity=0.167  Sum_probs=92.7

Q ss_pred             ceEEEEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEec------cCCCcceEEEEeCCCCeEEEEecCCCc---eEEEEE
Q 022387          177 EVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIET------IANPKGLCAVSQGVGSLVLVCPGLQKG---QVRVEH  245 (298)
Q Consensus       177 ~v~~v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~------~~~~~~~~~~s~~~d~~~la~sGs~dg---~v~i~~  245 (298)
                      .+.+++|+++.+++..  +++|++||+.+++++.++..      |..++.+++|++  ++.+|++ |+.|+   .|++||
T Consensus       186 ~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l~s-gs~D~t~~~i~lwd  262 (393)
T d1sq9a_         186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAI-AHDSNSFGCITLYE  262 (393)
T ss_dssp             CCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS--STTEEEE-EEEETTEEEEEEEE
T ss_pred             cEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc--ccceeee-ecCCCCcceeeecc
Confidence            4778899988655543  58999999999988877653      445555556554  5588884 77775   588899


Q ss_pred             cCCcceE-e-------------ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          246 YASKRTK-F-------------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       246 ~~~~~~~-~-------------~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ...+... +             +.+|...|++|+|+|||++|||||.|++ |||||+++|++++++
T Consensus       263 ~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTL  327 (393)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             cccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE-EEEEECCCCCEEEEE
Confidence            8765322 2             3589999999999999999999999999 999999999999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=9.6e-23  Score=182.55  Aligned_cols=197  Identities=8%  Similarity=-0.050  Sum_probs=146.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|..+|++++|+|++++||+|+.|+ ++||+++.........+. |...+..+.+.++++.+++++       .|++|+
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-------~d~~i~  120 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-------GSRVIS  120 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-------TTSSEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeec-------ccCcce
Confidence            46788999999999999999998865 899999877654444331 566788999999999988887       679999


Q ss_pred             EEeCCCCcEEEEe----e-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCC------------------eEEEEEecc
Q 022387          160 IWDDHQSRCIGEL----S-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADL------------------KLLHQIETI  213 (298)
Q Consensus       160 iWD~~~~~~~~~~----~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~------------------~~i~~~~~~  213 (298)
                      +|++........+    . +...|.++.|+++  .++++. +++|++||+...                  +.+.....|
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             eeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            9998765432221    1 3457999999975  444444 589999998532                  234444445


Q ss_pred             CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ...+..++|  ++++.+|+ +|+.||.|++||..... +..+..|..+|++|+|+|||++||+|+ |+. +++|....
T Consensus       201 ~~~v~~~~~--s~~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~-~~~~~~~~  273 (371)
T d1k8kc_         201 CGWVHGVCF--SANGSRVA-WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCF-PVLFTYDS  273 (371)
T ss_dssp             SSCEEEEEE--CSSSSEEE-EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSS-CEEEEEET
T ss_pred             cCcEEEEEe--eccccccc-ccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCc-eEEEEeeC
Confidence            444444455  45567887 48899999999997655 457899999999999999999999876 666 66665544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.1e-22  Score=178.35  Aligned_cols=195  Identities=14%  Similarity=0.161  Sum_probs=144.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEE-ecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..|...|.+++|++++..+++|+.++ +++|+..+.........  ......+.+ ..+++.+++++       .|+.|+
T Consensus       160 ~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-------~d~~i~  230 (388)
T d1erja_         160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAAGS-------LDRAVR  230 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSTTCCEEEEEE-------TTSCEE
T ss_pred             ccccccccccccccccccccccccceeeeeeecccccccccccc--ccccccccccCCCCCeEEEEc-------CCCeEE
Confidence            55778999999999999999998855 78999998876655543  333333333 34566777766       679999


Q ss_pred             EEeCCCCcEEEEee--------cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEE------------EEEeccCCC
Q 022387          160 IWDDHQSRCIGELS--------FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLL------------HQIETIANP  216 (298)
Q Consensus       160 iWD~~~~~~~~~~~--------~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i------------~~~~~~~~~  216 (298)
                      +||.+++..+..+.        +...|.++.|+++  .++++. ++.|++||+.+.+..            .....|...
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (388)
T d1erja_         231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF  310 (388)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC
T ss_pred             EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce
Confidence            99999988776653        2357999999875  455544 589999999754432            233334444


Q ss_pred             cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEE------CCCCCEEEEEeCCCCEEEEEECC
Q 022387          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFAL------TQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~f------spdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +..++++  +++.+|+ +|+.||.|++||..+.. +.++++|.+.|+++++      +|+|++|||||.||+ |||||++
T Consensus       311 v~~~~~s--~~~~~l~-sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~-I~iW~~~  386 (388)
T d1erja_         311 VLSVATT--QNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK-ARIWKYK  386 (388)
T ss_dssp             EEEEEEC--GGGCEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE-EEEEEEE
T ss_pred             EEEEEEC--CCCCEEE-EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE-EEEEeee
Confidence            4445554  4557888 49999999999998765 5589999999999975      679999999999999 9999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-21  Score=169.30  Aligned_cols=205  Identities=15%  Similarity=0.237  Sum_probs=138.2

Q ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC--------
Q 022387           81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP--------  151 (298)
Q Consensus        81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  151 (298)
                      ..+|...|.+ ++++||++||||+.|+ |+|||+.+.+.+..... |.+.+..+.+.  ++.+++++.....        
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~--~~~l~s~s~D~~~~~~~~~~~   87 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG   87 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeC--CCccccceecccccccccccc
Confidence            4578888865 4777899999999866 89999999887655543 56666665554  4566555421100        


Q ss_pred             -------------------------CCCCCeEEEEe----------------------------------------CCCC
Q 022387          152 -------------------------QYPLNKVMIWD----------------------------------------DHQS  166 (298)
Q Consensus       152 -------------------------~~~d~~v~iWD----------------------------------------~~~~  166 (298)
                                               ...|+++.+||                                        ....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  167 (342)
T d2ovrb2          88 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE  167 (342)
T ss_dssp             EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT
T ss_pred             cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccc
Confidence                                     00122233333                                        3332


Q ss_pred             cEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387          167 RCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (298)
Q Consensus       167 ~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~  244 (298)
                      ..+..+..+ ..+..+.+++..++++. ++.|++||++..++++++..|...+  .++++++  .+|+ +|+.||.|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v--~~~~~~~--~~l~-s~s~d~~i~iw  242 (342)
T d2ovrb2         168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKD--NILV-SGNADSTVKIW  242 (342)
T ss_dssp             EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--EEEEEET--TEEE-EEETTSCEEEE
T ss_pred             eeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccce--eEEecCC--CEEE-EEcCCCEEEEE
Confidence            222222222 23445556666777665 5899999999999999988876654  4455554  4666 48999999999


Q ss_pred             EcCCcce-Eeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          245 HYASKRT-KFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       245 ~~~~~~~-~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +...... ..+.   .|...+.+++|+  +++|++||.||+ |||||+++|++++++
T Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~-i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         243 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLKTGEFIRNL  296 (342)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             ecccccccccccccceeeeceeecccC--CCeeEEEcCCCE-EEEEECCCCCEEEEE
Confidence            9876543 3444   466677777775  579999999999 999999999998875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.4e-21  Score=166.27  Aligned_cols=199  Identities=12%  Similarity=0.202  Sum_probs=136.9

Q ss_pred             cCCCCCCe-EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           81 SSSPPPTL-LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        81 ~~~~~~~V-~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ..+|...| +|++|  ||++||+|+.|+ |+|||+.+.+.+..... |.+.+..+.+..+ +.+++++       .|++|
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~-~~l~s~s-------~D~~i   76 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSGS-------TDRTV   76 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETT-TEEEEEE-------TTCCE
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCC-CEEEEEe-------ccccc
Confidence            45677665 56554  688999999866 88999999887766664 7888988888764 5666666       57888


Q ss_pred             EEEeCCCCcEEEEeecCC---ceEEEEEeCC-------------------------------------------------
Q 022387          159 MIWDDHQSRCIGELSFRS---EVRSVKLRRD-------------------------------------------------  186 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~---~v~~v~~~~~-------------------------------------------------  186 (298)
                      ++|+....+.........   ......+.++                                                 
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            888887766554433221   1111222222                                                 


Q ss_pred             ----------------eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc
Q 022387          187 ----------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (298)
Q Consensus       187 ----------------~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~  249 (298)
                                      .++.+. ++.|++||+.+++.+..+..+........+++  ++.++++ |+.||.|++|+....
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH--ERKRCIS-ASMDTTIRIWDLENG  233 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--TTTEEEE-EETTSCEEEEETTTC
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc--cceeeec-ccccceEEeeecccc
Confidence                            222222 24555666655555555554444444444444  4466664 899999999999876


Q ss_pred             c-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          250 R-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       250 ~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      . +..+.+|...|++++|++  ++||+|+.||+ |+|||++++++..+
T Consensus       234 ~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~-i~iwd~~~~~~~~~  278 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLSD--KFLVSAAADGS-IRGWDANDYSRKFS  278 (355)
T ss_dssp             CEEEEECCCSSCCCEEEECS--SEEEEECTTSE-EEEEETTTCCEEEE
T ss_pred             cccccccccccccccccccc--ceeeeeecccc-cccccccccceecc
Confidence            5 458899999999999974  79999999999 99999999877544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.9e-21  Score=166.50  Aligned_cols=197  Identities=13%  Similarity=0.061  Sum_probs=145.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC--C-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD--H-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~--~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .+..+|.+++|+++|++|++++.  + .+++|+.++.+.+..... |...+..+.+.++...++++++      .|+.|+
T Consensus       113 ~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~------~d~~v~  185 (325)
T d1pgua1         113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPMRSMTVG------DDGSVV  185 (325)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS-CSSCEEEEEECSSSSCEEEEEE------TTTEEE
T ss_pred             cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeee-cccccccccccccccceEEEee------cccccc
Confidence            46678999999999999887653  3 377999998876655543 5677888888877665444332      579999


Q ss_pred             EEeCCCCcEEEEeec----CCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC-CCCeE
Q 022387          160 IWDDHQSRCIGELSF----RSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-VGSLV  230 (298)
Q Consensus       160 iWD~~~~~~~~~~~~----~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~-~d~~~  230 (298)
                      +||....+....+..    ...|.+++|+++   .++++. ++.|++||+++++.++++..|..++....++.. +++.+
T Consensus       186 ~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~  265 (325)
T d1pgua1         186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK  265 (325)
T ss_dssp             EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSE
T ss_pred             cccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCE
Confidence            999988776655432    346899999874   344444 589999999999999999988777665555432 35577


Q ss_pred             EEEecCCCceEEEEEcCCcce-Eeecccc--cceeEEEECCC-CCEEEEEeCCCCEEEEEEC
Q 022387          231 LVCPGLQKGQVRVEHYASKRT-KFIMAHD--SRIACFALTQD-GQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~~-~~~~~H~--~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~  288 (298)
                      |+ +|+.||.|+|||+..++. ..+..|.  ..+..+++.+. ..+|+|+|.||+ |+|||+
T Consensus       266 l~-s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~-i~vwdl  325 (325)
T d1pgua1         266 FA-TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT-LNFYEL  325 (325)
T ss_dssp             EE-EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC-EEEEET
T ss_pred             EE-EEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCE-EEEEEC
Confidence            77 489999999999987654 4555444  44556666543 358999999999 999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.2e-20  Score=162.07  Aligned_cols=161  Identities=10%  Similarity=0.082  Sum_probs=132.7

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC------------------
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD------------------  186 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~------------------  186 (298)
                      |.+.|..+++++++..+++++       .||+|+|||+.+++.+..+..+ ..|.+++|+++                  
T Consensus        54 H~~~I~~l~~s~~~~~l~sgs-------~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          54 HLAKIYAMHWGTDSRLLVSAS-------QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE-------TTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             CCCCEEEEEECCCCCEEEEEE-------CCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            688899999999999998887       7899999999999988887754 46777777654                  


Q ss_pred             -----------------------------------------------------------------------eEEEEE-CC
Q 022387          187 -----------------------------------------------------------------------RIIVVL-EQ  194 (298)
Q Consensus       187 -----------------------------------------------------------------------~l~v~~-~~  194 (298)
                                                                                             .++++. ++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence                                                                                   222222 47


Q ss_pred             eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE---eecccccceeEEEECCCCC
Q 022387          195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQ  271 (298)
Q Consensus       195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~~~H~~~V~~l~fspdg~  271 (298)
                      .|++||+++++++.++..|..++..+++++  ++.+|++ |+.||.|++|+.......   ....|...|++++|+|+|+
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p--~~~~l~s-~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAFAT-GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECC--CCCEEEE-EeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            899999999999999998888777666655  5578874 899999999999876533   3456778899999999999


Q ss_pred             EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          272 LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       272 ~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +|++|+.||+ |+|||+.++++++++
T Consensus       284 ~l~~g~~dg~-i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         284 LLLAGYDDFN-CNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             EEEEEECCCE-EEEEECCCCcEEEEE
Confidence            9999999999 999999999998875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.6e-20  Score=158.41  Aligned_cols=186  Identities=10%  Similarity=0.139  Sum_probs=144.5

Q ss_pred             EEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEE
Q 022387           92 SFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (298)
Q Consensus        92 ~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~  170 (298)
                      .+.....++++++. ..+++|+...........   .+......+.+++..+++++       .|++|++||++.++.+.
T Consensus       142 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~-------~dg~i~~~d~~~~~~~~  211 (342)
T d2ovrb2         142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQFDGIHVVSGS-------LDTSIRVWDVETGNCIH  211 (342)
T ss_dssp             EEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEECSSEEEEEE-------TTSCEEEEETTTCCEEE
T ss_pred             eeccccceeeeecCCCeEEEeecccceeeEEEc---CcccccccccCCCCEEEEEe-------CCCeEEEeecccceeee
Confidence            34455566777766 458899998877655544   44555666677888888877       78999999999999888


Q ss_pred             EeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCC-CcceEEEEeCCCCeEEEEecCCCceEEEEEcC
Q 022387          171 ELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (298)
Q Consensus       171 ~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~-~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~  247 (298)
                      .+..+ ..+.++.++++.++++. ++.|++||+...+....+..+.. .....++++++  .+++ +|+.||.|++|++.
T Consensus       212 ~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVI-TSSDDGTVKLWDLK  288 (342)
T ss_dssp             EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEE-EEETTSEEEEEETT
T ss_pred             EecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeE-EEcCCCEEEEEECC
Confidence            77765 47888999999888876 48999999999888888876443 34556777765  5666 48899999999998


Q ss_pred             Ccce-Eee-----cccccceeEEEECCCCCEEEEEeCCCC---EEEEEECCC
Q 022387          248 SKRT-KFI-----MAHDSRIACFALTQDGQLLATSSTKGT---LVRIFNTLD  290 (298)
Q Consensus       248 ~~~~-~~~-----~~H~~~V~~l~fspdg~~lAt~S~Dgt---~IrIWd~~t  290 (298)
                      +.+. ..+     .+|.+.|++|+|+|++.+||+|+.||+   .|+|||+..
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            7543 333     368889999999999999999999984   499999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-20  Score=157.93  Aligned_cols=189  Identities=13%  Similarity=0.218  Sum_probs=134.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeec------------------CCce------------
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER------------------GGGI------------  130 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~------------------~~~~------------  130 (298)
                      ..|...|++++|  ++++|++|+.|+ +++|++.............                  .+.+            
T Consensus        52 ~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (293)
T d1p22a2          52 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT  129 (293)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCE
T ss_pred             ecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccc
Confidence            457778988877  678999998866 7899886654433222100                  0000            


Q ss_pred             ----------EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEE
Q 022387          131 ----------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFV  198 (298)
Q Consensus       131 ----------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~i  198 (298)
                                .+....+....++..+       .|+.|++||.++++.+..+... ..+..+.+++..++++. ++.|++
T Consensus       130 ~~~~~~~~~~~v~~~~~~~~~~~~~s-------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  202 (293)
T d1p22a2         130 LRRVLVGHRAAVNVVDFDDKYIVSAS-------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL  202 (293)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEE-------TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             ccccccccccccccceeccccccccc-------CCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEE
Confidence                      0011111222223333       5799999999999988887755 46788888888877766 589999


Q ss_pred             EEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC----------cceEeecccccceeEEEECC
Q 022387          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----------KRTKFIMAHDSRIACFALTQ  268 (298)
Q Consensus       199 wd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~----------~~~~~~~~H~~~V~~l~fsp  268 (298)
                      ||+++.+.+..+..+...+  ..++.+  ..+|+ +|+.||.|++|++..          ..+.++.+|.+.|++|+|  
T Consensus       203 ~d~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--  275 (293)
T d1p22a2         203 WDIECGACLRVLEGHEELV--RCIRFD--NKRIV-SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--  275 (293)
T ss_dssp             EETTTCCEEEEECCCSSCE--EEEECC--SSEEE-EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--
T ss_pred             Eecccceeeeeecccceee--eecccc--ceEEE-EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--
Confidence            9999999988887765543  344444  36777 489999999999642          234578999999999999  


Q ss_pred             CCCEEEEEeCCCCEEEEEE
Q 022387          269 DGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd  287 (298)
                      ++++|||||.||+ |||||
T Consensus       276 d~~~l~s~s~Dg~-i~iWD  293 (293)
T d1p22a2         276 DEFQIVSSSHDDT-ILIWD  293 (293)
T ss_dssp             CSSCEEECCSSSE-EEEEC
T ss_pred             cCCEEEEEecCCE-EEEeC
Confidence            4678999999999 99997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=7.5e-20  Score=157.45  Aligned_cols=191  Identities=13%  Similarity=0.116  Sum_probs=140.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ..+...+.+++|+++|+++++++++.+++|+....   ....  .......+.+.+++..+++++       .|+.|++|
T Consensus        96 ~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~---~~~~--~~~~~~~~~~s~~~~~l~~g~-------~dg~i~~~  163 (299)
T d1nr0a2          96 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL---TEVP--ISYNSSCVALSNDKQFVAVGG-------QDSKVHVY  163 (299)
T ss_dssp             EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE---EEEE--CSSCEEEEEECTTSCEEEEEE-------TTSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc---cccc--ccccccccccccccccccccc-------cccccccc
Confidence            34566899999999999999999999999985432   2222  256778888888888888877       68999999


Q ss_pred             eCCCCcEE--EEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEE---EeccCCCcceEEEEeCCCCeEEEE
Q 022387          162 DDHQSRCI--GELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQ---IETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       162 D~~~~~~~--~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~---~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      |+++++..  ....+...|.++.|+++  .++++. ++.|++||+.+...+..   +..|..++..++  +++++.+|+ 
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~~~~~l~-  240 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS--WSPDNVRLA-  240 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE--ECTTSSEEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccceE-
Confidence            99887653  34456678999999875  444444 48999999977655443   334555555555  455668888 


Q ss_pred             ecCCCceEEEEEcCCcc---eEeeccc-ccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          234 PGLQKGQVRVEHYASKR---TKFIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~~---~~~~~~H-~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      +|+.||.|++|++....   ......| ...|++++| +++++|+|||.|++ |||||+.
T Consensus       241 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~-i~iWdl~  298 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSN-IKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSC-EEEEECC
T ss_pred             EEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCE-EEEEecc
Confidence            49999999999987643   2333444 456777755 56789999999999 9999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4e-19  Score=150.06  Aligned_cols=195  Identities=13%  Similarity=0.219  Sum_probs=141.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      .+...|+|++  +||++||+|+.|| |+|||+++.+.+.+... |.+.+.  .+.++++.+++++       .|++|++|
T Consensus        13 ~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~--~v~~~~~~l~s~s-------~D~~i~~~   80 (293)
T d1p22a2          13 ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVL--CLQYDERVIITGS-------SDSTVRVW   80 (293)
T ss_dssp             SSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEE--EEECCSSEEEEEE-------TTSCEEEE
T ss_pred             CCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEe--eeecccceeeccc-------cccccccc
Confidence            4556898865  5799999999866 89999999887766653 455554  4567888888877       78999999


Q ss_pred             eCCCCcEEEEeecCCc-eEEEEEeCCeEEEEE-CCeEEEEEcCCCeEE---EEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387          162 DDHQSRCIGELSFRSE-VRSVKLRRDRIIVVL-EQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~-v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i---~~~~~~~~~~~~~~~s~~~d~~~la~sGs  236 (298)
                      ++..+........... ..........++.+. ++.+++|++......   ..+..|...  +..+.+..  ..++ +++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~-~~s  155 (293)
T d1p22a2          81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDFDD--KYIV-SAS  155 (293)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC--EEEEEEET--TEEE-EEE
T ss_pred             ccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc--cccceecc--cccc-ccc
Confidence            9999887776665543 333344445555555 489999999765432   333334333  33444443  3343 378


Q ss_pred             CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .||.|++|+..... +..+.+|...|..+.++  +.+|++++.||+ |+|||+++++.+..+
T Consensus       156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVL  214 (293)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeee
Confidence            89999999998765 45788999999888875  568999999999 999999999888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.2e-19  Score=155.43  Aligned_cols=193  Identities=15%  Similarity=0.215  Sum_probs=129.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD  162 (298)
                      .|...|.+++|++++.++..|.++.+++|++...      .+  ...+..+.+..++..+ +.+       .++.+.+|+
T Consensus        44 ~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~------~~--~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~  107 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH------EF--GSQPKVASANNDGFTA-VLT-------NDDDLLILQ  107 (287)
T ss_dssp             CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE------EC--SSCEEEEEECSSSEEE-EEE-------TTSEEEEEE
T ss_pred             CCCCCEEEEEecCCCeEEEEeecccccccccccc------cc--ccceeeeeeccCCceE-EEe-------ecccceeee
Confidence            3445566666665544333333344566654321      11  2233334433333332 223       346678888


Q ss_pred             CCCCcEEEEeecCCceEEEEEeCCeEEEEEC--CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVLE--QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKG  239 (298)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~--~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~dg  239 (298)
                      ..+++.+..+.+...+.++..+.+.++++..  +.|++|++.+.+....+.. +...+..+++  ++++.+|++ |+.||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~-g~~dg  184 (287)
T d1pgua2         108 SFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI--SPSETYIAA-GDVMG  184 (287)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEE--CTTSSEEEE-EETTS
T ss_pred             ccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEe--ccCcccccc-ccccc
Confidence            8888888888887788888888888887764  5799999987766555543 3344444454  556688884 99999


Q ss_pred             eEEEEEcCCcceE--eecccccceeEEEECCC----------CCEEEEEeCCCCEEEEEECCCC-cEEE
Q 022387          240 QVRVEHYASKRTK--FIMAHDSRIACFALTQD----------GQLLATSSTKGTLVRIFNTLDG-TLLQ  295 (298)
Q Consensus       240 ~v~i~~~~~~~~~--~~~~H~~~V~~l~fspd----------g~~lAt~S~Dgt~IrIWd~~tg-~~l~  295 (298)
                      .|++|+.......  .+.+|...|++++|+|+          +.+|||||.|++ |+|||++++ ++++
T Consensus       185 ~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~  252 (287)
T d1pgua2         185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIK  252 (287)
T ss_dssp             CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEE
T ss_pred             cccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEE
Confidence            9999999877644  56789999999999875          468999999999 999999874 4444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=4.2e-19  Score=155.49  Aligned_cols=199  Identities=13%  Similarity=0.079  Sum_probs=139.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCe--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           83 SPPPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs-~~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      .|...|++++|+|||++|++++ +++  +++|+.++.+......  |...+..+.+++++..+++++       .++.++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-------~~~~~~  110 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE--NLGNVFAMGVDRNGKFAVVAN-------DRFEIM  110 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC--CCCSEEEEEECTTSSEEEEEE-------TTSEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC--CCceEEeeeecccccccceec-------cccccc
Confidence            5677999999999999988665 444  6799998876543333  577888999999999999888       679999


Q ss_pred             EEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEE-----------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC
Q 022387          160 IWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-----------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~  225 (298)
                      +|++.+++....+..+ ..+.++.|+++.  ++.+.           ++.+++||+.+.+..... .+.......++++ 
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp-  188 (360)
T d1k32a3         111 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA-  188 (360)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT-
T ss_pred             cccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccC-
Confidence            9999999887777655 467788998753  33322           136899999876543221 1111111111111 


Q ss_pred             CCCeEEEE------------------------------------------------------------------------
Q 022387          226 VGSLVLVC------------------------------------------------------------------------  233 (298)
Q Consensus       226 ~d~~~la~------------------------------------------------------------------------  233 (298)
                       |+..|++                                                                        
T Consensus       189 -dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         189 -DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             -TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             -CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence             1122221                                                                        


Q ss_pred             -------------------------ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          234 -------------------------PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       234 -------------------------sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                                               +++.++.|++|+++.++..   .|.+.|++++|||||++||+++.||+ |+|||+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~v~~~~~SpDG~~l~~~~~Dg~-i~v~d~  343 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---EVKNNLTDLRLSADRKTVMVRKDDGK-IYTFPL  343 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---EEEEEEEEEEECTTSCEEEEEETTSC-EEEEES
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE---EecCCcCEEEECCCCCEEEEEECCCe-EEEEEC
Confidence                                     1334667777777665543   34456999999999999999999999 999999


Q ss_pred             CCCcEEEec
Q 022387          289 LDGTLLQEG  297 (298)
Q Consensus       289 ~tg~~l~~~  297 (298)
                      ++|+..+++
T Consensus       344 ~~~~~~~~~  352 (360)
T d1k32a3         344 EKPEDERTV  352 (360)
T ss_dssp             SCTTSCEEC
T ss_pred             CCCCcceEE
Confidence            998766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.1e-19  Score=152.77  Aligned_cols=190  Identities=12%  Similarity=0.059  Sum_probs=144.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ..+.++++++++.+++++.++++.+|+....+.......  ...  ...+.++.+.+++.+.      .++.|++|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~~------~~~~v~~~~~~~  150 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--NSP--GSAVSLSQNYVAVGLE------EGNTIQVFKLSD  150 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSC--EEEEEECSSEEEEEET------TTSCEEEEETTE
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--cce--eeeeeccCcceeeecc------ccceeeeeeccc
Confidence            468899999999999999999999999888877655553  333  3445566777776662      346799999987


Q ss_pred             CcEEEEee--cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEE-EeccCCCcceEEEEeC--------CCCeEE
Q 022387          166 SRCIGELS--FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQG--------VGSLVL  231 (298)
Q Consensus       166 ~~~~~~~~--~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~-~~~~~~~~~~~~~s~~--------~d~~~l  231 (298)
                      .+....+.  +...+.+++|+++  .++++. ++.|++||+.+.+.+.. +..|..++..+++++.        .++.++
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         151 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCee
Confidence            66555544  3457999999875  455554 57999999988876543 4556677777776653        345677


Q ss_pred             EEecCCCceEEEEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387          232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~  288 (298)
                      | +|+.||.|++|++..  +.+..+.+|...|++|+|+|++ .|+|+|.|++ |||||+
T Consensus       231 ~-sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~-v~iW~i  286 (287)
T d1pgua2         231 A-TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC-IKRWNV  286 (287)
T ss_dssp             E-EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSC-EEEEEE
T ss_pred             E-eecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCe-EEEEEE
Confidence            7 599999999999865  3355788999999999999987 5889999999 999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=2.9e-19  Score=156.51  Aligned_cols=193  Identities=11%  Similarity=-0.035  Sum_probs=156.8

Q ss_pred             EEEEcC-CCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387           90 HISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (298)
Q Consensus        90 ~v~fs~-dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~  168 (298)
                      .-.||| ||+++|+++.+.+.||+.+......   +.|.+.+..+.|++++..+++++..     ..+.|++||+++++.
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~---~~~~~~v~~~~~spDg~~l~~~~~~-----~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGTR-----EGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEE---CSCCSCEEEEEECSSSEEEEEEEET-----TEEEEEEEETTTCCE
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEE---ccCCCCEEEEEECCCCCEEEEEEcC-----CCCEEEEEECCCCcE
Confidence            356999 9999999999989999998765432   2268889999999999998887743     225799999999988


Q ss_pred             EEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe---------cC
Q 022387          169 IGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---------GL  236 (298)
Q Consensus       169 ~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s---------Gs  236 (298)
                      .....+...|.++.|+++  .++++. ++.+++|++.+.+....+..+......+++++++  .+||++         +.
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSC
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccce--eeeeeeccccccceeec
Confidence            776677788999999986  444444 4799999999999888888777767677776654  777753         45


Q ss_pred             CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      .++.+++|+...++...+..|...+..++|+|||++||+++.|+. +++||......
T Consensus       157 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~~~  212 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNF  212 (360)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCE
T ss_pred             cccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccccce
Confidence            567899999998888888888899999999999999999999999 99999776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=9e-18  Score=143.40  Aligned_cols=202  Identities=14%  Similarity=0.083  Sum_probs=142.0

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (298)
Q Consensus        86 ~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~  163 (298)
                      ..+..++|+|||++|+ +++. +.|++||+.+.+.+.....  ......+.+..++..+++.+.      .++.+++||.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  103 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDT  103 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET------TTTEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec--ccccccccccccccccccccc------ccceeeeccc
Confidence            3578999999999875 5555 5689999999887666653  455667777777777766653      3578999999


Q ss_pred             CCCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCC-----------------------
Q 022387          164 HQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANP-----------------------  216 (298)
Q Consensus       164 ~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~-----------------------  216 (298)
                      .+++....+.......++.++++  .+++..  ++.+.+|+..+.+.+..+..+..+                       
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (301)
T d1l0qa2         104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS  183 (301)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             ccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccc
Confidence            99888888887777777777764  333333  357778887766665554322111                       


Q ss_pred             ------------------cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEE-EEE
Q 022387          217 ------------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLL-ATS  276 (298)
Q Consensus       217 ------------------~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~l-At~  276 (298)
                                        ...++++++++..+++..+..++.|.+||..+.++. .+. +...+++|+|+|||++| +++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             EEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEE
T ss_pred             cccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEE
Confidence                              012234444333334433456688999999877654 443 34568999999999976 788


Q ss_pred             eCCCCEEEEEECCCCcEEEec
Q 022387          277 STKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       277 S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.|++ |+|||+++++++.++
T Consensus       263 ~~~~~-i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         263 SFCNT-VSVIDTATNTITATM  282 (301)
T ss_dssp             TTTTE-EEEEETTTTEEEEEE
T ss_pred             CCCCe-EEEEECCCCeEEEEE
Confidence            88998 999999999998775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.7e-18  Score=150.11  Aligned_cols=181  Identities=11%  Similarity=0.087  Sum_probs=139.2

Q ss_pred             EEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387           91 ISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        91 v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~  169 (298)
                      ..+.+++++++++..++ +++|++.+.+.+..... +........+.+....+++++       .|++|++||.+++..+
T Consensus       165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISAS-------MDTTIRIWDLENGELM  236 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEE-------TTSCEEEEETTTCCEE
T ss_pred             cccccccceeeeecccceeeeeecccccceeeeec-cccccccccccccceeeeccc-------ccceEEeeeccccccc
Confidence            34567889999998765 88999998877655543 355667777788888888877       6799999999999998


Q ss_pred             EEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc-eEEEEeCCCCeEEEEecCCCceEEEEEc
Q 022387          170 GELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (298)
Q Consensus       170 ~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~-~~~~s~~~d~~~la~sGs~dg~v~i~~~  246 (298)
                      ..+..+ ..|.++.++++.++++. ++.|++||+++.+...  ..|...+. +.++++++  .++++ | .||.|++||+
T Consensus       237 ~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l~~-g-~d~~i~vwd~  310 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSD--NILVS-G-SENQFNIYNL  310 (355)
T ss_dssp             EEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECS--SEEEE-E-ETTEEEEEET
T ss_pred             cccccccccccccccccceeeeeecccccccccccccceec--ccccCCceEEEEEcCCC--CEEEE-E-eCCEEEEEEC
Confidence            888765 57899999998888776 5899999998876543  34444333 34555543  66663 4 5899999999


Q ss_pred             CCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387          247 ASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (298)
Q Consensus       247 ~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd  287 (298)
                      +++++.  .+.+|...|++|+|+|+ .+++++|.||+ ++||.
T Consensus       311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~-~~l~~  351 (355)
T d1nexb2         311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQ-SFLEI  351 (355)
T ss_dssp             TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSC-EEEEE
T ss_pred             CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCc-EEEEE
Confidence            876543  57889999999999997 58889999998 77664

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5.7e-18  Score=144.20  Aligned_cols=161  Identities=12%  Similarity=0.173  Sum_probs=133.4

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEc
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNF  201 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~  201 (298)
                      |.+.|..+.++++++.+++++       .|++|+|||+.+++.+.++..+ ..|.++.++++.  ++... ++.+.+|+.
T Consensus        16 H~~~I~~l~~sp~~~~l~s~s-------~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          16 HRSPVTRVIFHPVFSVMVSAS-------EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE-------SSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            688899999999999888877       6899999999999998888754 589999998764  33333 478999999


Q ss_pred             CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCC
Q 022387          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       202 ~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg  280 (298)
                      ...+....+..+......+.+++  ++..++ +++.|+.+++|+..... ...+.+|...+.+++|+|++++||+++.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMP--NGDHIV-SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECS--SSSEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccceeeeccC--CCceEE-eeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence            88887777776666655556555  446776 48999999999998765 458899999999999999999999999999


Q ss_pred             CEEEEEECCCCcEEEec
Q 022387          281 TLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       281 t~IrIWd~~tg~~l~~~  297 (298)
                      . |++|++.+++.+.++
T Consensus       166 ~-v~~~~~~~~~~~~~~  181 (317)
T d1vyhc1         166 T-VRVWVVATKECKAEL  181 (317)
T ss_dssp             C-EEEEETTTCCEEEEE
T ss_pred             e-EEEEeeccceeeEEE
Confidence            9 999999999887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.7e-17  Score=149.06  Aligned_cols=180  Identities=16%  Similarity=0.134  Sum_probs=122.3

Q ss_pred             CCCCeEEEEEcCCC-----CEEEEEcCCe-EEEEEcCCCc-------------eEEEEeee----cCCceEEEEEecCCC
Q 022387           84 PPPTLLHISFNQDH-----GCFAAGTDHG-FRIYNCDPFR-------------EIFRRDFE----RGGGIGVVEMLFRCN  140 (298)
Q Consensus        84 ~~~~V~~v~fs~dg-----~~lasgs~~g-i~vw~~~~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~  140 (298)
                      ++..+..++|.+++     .++++++.++ +++|++....             ........    +...+.++++.+++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            34578888888764     5777777654 8899874221             11111110    22234556666554 


Q ss_pred             EEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEee-------cCCceEEEEEeCC--eEEEEEC-C---eEEEEEcCCCeEE
Q 022387          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-------FRSEVRSVKLRRD--RIIVVLE-Q---KIFVYNFADLKLL  207 (298)
Q Consensus       141 ~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~-------~~~~v~~v~~~~~--~l~v~~~-~---~I~iwd~~~~~~i  207 (298)
                      .+++++       .|++|+|||+++++.+..+.       +...|.+++|+++  .++++.+ +   .|++||+.+++.+
T Consensus       197 ~lasgs-------~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~  269 (393)
T d1sq9a_         197 LIATGF-------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  269 (393)
T ss_dssp             EEEEEC-------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EEEEEe-------CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence            555544       68999999999998876654       3357999999875  4555543 3   5999999999888


Q ss_pred             EEEe-------------ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeeccccccee----EEEECCC
Q 022387          208 HQIE-------------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA----CFALTQD  269 (298)
Q Consensus       208 ~~~~-------------~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~----~l~fspd  269 (298)
                      .++.             +|...+..++|++  ++.+|+ +|+.||+|++||+++.. +.++++|...|.    .++|+|+
T Consensus       270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp--d~~~l~-S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         270 GSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLC-SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECS--SSSEEE-EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             eeeccccccccceeeeecccCceeeeccCC--CCCeeE-EECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCC
Confidence            8875             4555555556554  558888 69999999999998765 458999987765    3666666


Q ss_pred             CCEEE
Q 022387          270 GQLLA  274 (298)
Q Consensus       270 g~~lA  274 (298)
                      |..++
T Consensus       347 ~~~~~  351 (393)
T d1sq9a_         347 GDSLA  351 (393)
T ss_dssp             SCBCS
T ss_pred             CCEEE
Confidence            65444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=7.3e-17  Score=139.48  Aligned_cols=207  Identities=8%  Similarity=-0.035  Sum_probs=143.8

Q ss_pred             CCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCC-----ceEEEEEecCCCEEEEEeCCCC-----CCC
Q 022387           86 PTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGG-----GIGVVEMLFRCNILALVGGGPD-----PQY  153 (298)
Q Consensus        86 ~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~  153 (298)
                      ..+.+++|+|||++|+ +++. +.+.+||+.+.+.+..... +..     ....+.+++++..++++.....     ...
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL-STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC-CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            3567899999999874 6665 5588999999887766553 111     1224566777777766542110     001


Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe-EEEEECCeEEEEEcCCCeEEEEEeccCCCc---------------
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETIANPK---------------  217 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~---------------  217 (298)
                      .+..+.+||..+++....+.....+..+.++++. .+++.++.+.+||..+++...++..+....               
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             cccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccc
Confidence            3578999999999999888888778888888753 333445668888888777766654321100               


Q ss_pred             -------------------------------------------------ceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387          218 -------------------------------------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (298)
Q Consensus       218 -------------------------------------------------~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~  248 (298)
                                                                       ....+...+++.+++   ..++.|++||..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~d~~~  269 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF---GAYNVLESFDLEK  269 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE---EEESEEEEEETTT
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE---EccccEEEEECCC
Confidence                                                             011222233344444   2357899999998


Q ss_pred             cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       249 ~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ........+...+.+|+|+|||++|++++.|++ |+|||.++++.+.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~-i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         270 NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQV  317 (337)
T ss_dssp             TEEEEEEECSSCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEE
T ss_pred             CcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcEEEEE
Confidence            776544456778999999999999999999999 999999999998775

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=8.2e-17  Score=139.67  Aligned_cols=198  Identities=10%  Similarity=0.017  Sum_probs=128.5

Q ss_pred             EEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387           91 ISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        91 v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~  169 (298)
                      ++|+++++||++++. +.|.|||+++.+.+.+..+.+......+.+++++..+++++.      .++.|++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~------~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC------CCCcEEEEeCccCeee
Confidence            478999999999987 568899999998876666533445678888999888776653      4689999999998877


Q ss_pred             EEeecCC-------ceEEEEEeCC--------------------------------------------------------
Q 022387          170 GELSFRS-------EVRSVKLRRD--------------------------------------------------------  186 (298)
Q Consensus       170 ~~~~~~~-------~v~~v~~~~~--------------------------------------------------------  186 (298)
                      ..+....       .+..+.++++                                                        
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            6654321       1222333322                                                        


Q ss_pred             eEEEEECCeEEEEEcCCCeEEEEEeccCCCcc------------------------------------------------
Q 022387          187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKG------------------------------------------------  218 (298)
Q Consensus       187 ~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~------------------------------------------------  218 (298)
                      ..+...++.+.+|++.+++.+.++..+..+..                                                
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            11111223455666655555555432211000                                                


Q ss_pred             ------------------eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC
Q 022387          219 ------------------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (298)
Q Consensus       219 ------------------~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg  280 (298)
                                        .......+++..+++  ..++.|.+||..+.+......+...+++|+|||||++|++++.|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE--EEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEE--ecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                              001111111222221  123578888887766543334556799999999999999999999


Q ss_pred             CEEEEEECCCCcEEEec
Q 022387          281 TLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       281 t~IrIWd~~tg~~l~~~  297 (298)
                      + |+|||+++++++.+.
T Consensus       314 ~-v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         314 D-LAVFNPDTLEKVKNI  329 (346)
T ss_dssp             E-EEEEETTTTEEEEEE
T ss_pred             c-EEEEECccCCEEEEE
Confidence            9 999999999998764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=7.1e-16  Score=140.05  Aligned_cols=204  Identities=9%  Similarity=-0.018  Sum_probs=137.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEE----ecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEM----LFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..+..++|||||++|++++.+ .+++||+++.+.....++........+.+    ++++..+++++.      .++++++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~------~~~~v~i  135 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAI  135 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec------CCCeEEE
Confidence            468999999999999999875 58899999887655444321222222222    346777665542      4688999


Q ss_pred             EeCCCCcEEEEeecC------------Cc--------------------------------------------eEEEEEe
Q 022387          161 WDDHQSRCIGELSFR------------SE--------------------------------------------VRSVKLR  184 (298)
Q Consensus       161 WD~~~~~~~~~~~~~------------~~--------------------------------------------v~~v~~~  184 (298)
                      ||..+++++..+..+            ..                                            +..+.++
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            998887655433211            11                                            1122232


Q ss_pred             CC--eEEEEE--CCeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--------cc
Q 022387          185 RD--RIIVVL--EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------KR  250 (298)
Q Consensus       185 ~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--------~~  250 (298)
                      ++  ++.++.  .+.+.+++..+++.+..+....  .+.....+.....+...+.+.+.|+.+.+|+...        +.
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~  295 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK  295 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence            21  233333  2578888888888877776533  2334445555555566666678889998887653        23


Q ss_pred             eEeecccccceeEEEECCCCCEEE-------EEeCCCCEEEEEECCCCcEEEe
Q 022387          251 TKFIMAHDSRIACFALTQDGQLLA-------TSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       251 ~~~~~~H~~~V~~l~fspdg~~lA-------t~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      ..++.+|...|+.++|+|||++|+       +++.|++ |+|||++++++.++
T Consensus       296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~  347 (426)
T d1hzua2         296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQ  347 (426)
T ss_dssp             EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCE
T ss_pred             eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeE
Confidence            457899999999999999999999       5677899 99999999876544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=8.4e-14  Score=126.91  Aligned_cols=189  Identities=13%  Similarity=0.101  Sum_probs=137.3

Q ss_pred             EEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc--EEEEeecC
Q 022387           99 CFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELSFR  175 (298)
Q Consensus        99 ~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~--~~~~~~~~  175 (298)
                      ++++.+++ .++|||.++.+.+.....  ...+..+.++++++++++++       .|++|++||+.+++  .+.++...
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~--g~~~~~v~fSpDG~~l~~~s-------~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCCCEEEEEc-------CCCCEEEEEeeCCCceEEEEEecC
Confidence            45777775 488999999998877775  45688899999999999887       67999999998865  44455543


Q ss_pred             CceEEEE----EeC--CeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcc---------eEEEEeCCCCeEEEEecCCC
Q 022387          176 SEVRSVK----LRR--DRIIVVL--EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQK  238 (298)
Q Consensus       176 ~~v~~v~----~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~---------~~~~s~~~d~~~la~sGs~d  238 (298)
                      .....+.    |++  +.+++..  ++.|++||..+++++..+..+.....         ..++..++++..++++...+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            3333343    443  3454433  58999999999999988876433222         22334444556666668889


Q ss_pred             ceEEEEEcCCcce-Eeec-ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          239 GQVRVEHYASKRT-KFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       239 g~v~i~~~~~~~~-~~~~-~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +.|.+++...... .... .+...+..++|+|||+++++++.++..|.+||..+++++..
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            9999999876442 2222 35567899999999999988888777799999999887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=9.4e-14  Score=126.58  Aligned_cols=115  Identities=10%  Similarity=-0.016  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEE----ecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEM----LFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      ..+..++|||||++|++++. +.+++||+.+.+.....++........+.+    ++++..+++.+.      .+++|+|
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~------~~~~v~i  135 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY------WPPQYVI  135 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ETTEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC------CCCeEEE
Confidence            36999999999999999887 458899998876443333311222222322    346776655442      5799999


Q ss_pred             EeCCCCcEEEEeec------------CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeE
Q 022387          161 WDDHQSRCIGELSF------------RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKL  206 (298)
Q Consensus       161 WD~~~~~~~~~~~~------------~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~  206 (298)
                      ||..+++.+..+..            ......+.++++  .++++.  ++.|.+||..+.+.
T Consensus       136 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             EeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence            99999988776542            234556677654  344444  36888888876554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=3.6e-13  Score=118.44  Aligned_cols=210  Identities=10%  Similarity=-0.024  Sum_probs=128.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC---CC
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QY  153 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  153 (298)
                      .+..++..++++|||+.+++...      ..+.+||.++.+.+.+..   .+....+.+++++..++++......   ..
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~---~~~~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---GGFLPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe---CCCCccEEEcCCCCEEEEEeecCCcccccc
Confidence            45568999999999998876421      236788988888766554   3444467889999998887643211   12


Q ss_pred             CCCeEEEEeCCCCcEEEEeecCCc------------------------------------------------eEEEEEeC
Q 022387          154 PLNKVMIWDDHQSRCIGELSFRSE------------------------------------------------VRSVKLRR  185 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~~~------------------------------------------------v~~v~~~~  185 (298)
                      .++.|++||..+++.+..+..+..                                                ..++.+++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  174 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence            468899999998877654432110                                                00111211


Q ss_pred             --CeEEEE--ECCeEEEEEcCCCeEEEEEeccCCCc----c---------------------------------------
Q 022387          186 --DRIIVV--LEQKIFVYNFADLKLLHQIETIANPK----G---------------------------------------  218 (298)
Q Consensus       186 --~~l~v~--~~~~I~iwd~~~~~~i~~~~~~~~~~----~---------------------------------------  218 (298)
                        +.+++.  .++++.+|+....+.......+....    .                                       
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  254 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence              122222  24678888876555444332111000    0                                       


Q ss_pred             ----------------eEEEEeCCCC--------eEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCC--E
Q 022387          219 ----------------LCAVSQGVGS--------LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ--L  272 (298)
Q Consensus       219 ----------------~~~~s~~~d~--------~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~--~  272 (298)
                                      .+++++++..        ..++ ....++.+.+||....+......|...+..++|+|||+  +
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l  333 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK-LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDL  333 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE-eecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEE
Confidence                            0111111110        1111 13344566777776665444445677899999999998  5


Q ss_pred             EEEEeCCCCEEEEEECCCCcEEEec
Q 022387          273 LATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       273 lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +++++.|++ |+|||+.+|++++++
T Consensus       334 ~vt~~~d~~-v~v~D~~tg~~~~~~  357 (373)
T d2madh_         334 YALSAGTEV-LHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEeCCCCe-EEEEECCCCCEEEEE
Confidence            689999999 999999999998875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.60  E-value=1.4e-12  Score=110.42  Aligned_cols=184  Identities=13%  Similarity=0.090  Sum_probs=140.2

Q ss_pred             EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE
Q 022387          102 AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS  180 (298)
Q Consensus       102 sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~  180 (298)
                      +++. ++|.|||+++.+.+.+..+  ......+.+++++..+++++.      .+++|++||+.+++.+..+..+..+..
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~------~~~~i~v~d~~t~~~~~~~~~~~~~~~   78 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGSSPQG   78 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             EECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCceeeeeeccccccc
Confidence            4444 6699999999987766664  566777888999988866553      458999999999999999888888888


Q ss_pred             EEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc
Q 022387          181 VKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA  256 (298)
Q Consensus       181 v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~  256 (298)
                      +.++++  .+++..  ++.+.+|+..+++.+..+..+.. ...+.+  .+++..+++++..++.+.+|+...........
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS-PLGLAL--SPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccccceeeecccccceeeeecccccc-ceEEEe--ecCCCeeeeeeccccceeeeeccccceeeecc
Confidence            888765  344444  36999999999998888876543 234444  44556666668889999999988776554444


Q ss_pred             cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       257 H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +...+.+++++|+++++++++.+...+.+|+....+....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            5567899999999999988887766588888887766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=8.3e-13  Score=113.67  Aligned_cols=203  Identities=10%  Similarity=0.125  Sum_probs=120.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEc-C-CeEEEEEcCCCceEEE--EeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs-~-~gi~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ++..|..++|||||++|++++ . +.|++|++++......  ....+......+.++++++.+++++.      .+++|+
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~------~~~~v~  108 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVS  108 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEE
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc------CCCcee
Confidence            445788999999999986554 3 5688999977543222  22213445667888999998888763      357899


Q ss_pred             EEeCCCCcEEEEee---cCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEE------------------------
Q 022387          160 IWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH------------------------  208 (298)
Q Consensus       160 iWD~~~~~~~~~~~---~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~------------------------  208 (298)
                      +|+...........   ....+.++.++++  .++++.  ...|.+|+........                        
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            99877655433322   2234555666553  233332  2456666653211100                        


Q ss_pred             -----------------------------EEecc----CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEe-
Q 022387          209 -----------------------------QIETI----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF-  253 (298)
Q Consensus       209 -----------------------------~~~~~----~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~-  253 (298)
                                                   .+...    ........+..++++.++.+.+..++.+.+|+..... ... 
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  268 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence                                         00000    0001122233344555555557788888888775432 222 


Q ss_pred             --ecccccceeEEEECCCCCEEEEEeC-CCCEEEEE--ECCCCcE
Q 022387          254 --IMAHDSRIACFALTQDGQLLATSST-KGTLVRIF--NTLDGTL  293 (298)
Q Consensus       254 --~~~H~~~V~~l~fspdg~~lAt~S~-Dgt~IrIW--d~~tg~~  293 (298)
                        ...+...++.|+|+|||++|++++. +++ |+||  |.++|++
T Consensus       269 ~~~~~~~~~p~~~a~spDGk~l~va~~~~~~-v~v~~id~~tG~l  312 (333)
T d1ri6a_         269 EGFQPTETQPRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEECSSSCCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEE
T ss_pred             EEEeCCCCCeeEEEEeCCCCEEEEEECCCCe-EEEEEEECCCCcE
Confidence              2234456889999999998777655 566 9999  5567765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.52  E-value=3.9e-12  Score=114.88  Aligned_cols=187  Identities=12%  Similarity=0.037  Sum_probs=129.8

Q ss_pred             EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEE--EeecC
Q 022387           99 CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--ELSFR  175 (298)
Q Consensus        99 ~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~--~~~~~  175 (298)
                      ++++.++++ |+|||+.+.+.+.+...  ...+..+.+++++..+++++       .|++|++||+.+++...  ++...
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~--g~~~~~vafSPDGk~l~~~~-------~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIG-------RDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEEC--CSSEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCCCEEEEEe-------CCCCEEEEEccCCceeEEEEEeCC
Confidence            456777755 88999999998877764  45688889999999998877       67999999999876443  34433


Q ss_pred             Cc----eEEEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEE-----
Q 022387          176 SE----VRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR-----  242 (298)
Q Consensus       176 ~~----v~~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~-----  242 (298)
                      ..    +.++.|++  +.++++.  ++.+++||..+++++..+..+...+....+.+++....++  ++.|+...     
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~s~d~~~~~~~~~  182 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII--ASHEHPEFIVNVK  182 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE--ECSSSSEEEEEET
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEE--ECCCCCEEEEecC
Confidence            22    33344444  3455543  5899999999999988887765555445555444322332  34444433     


Q ss_pred             ------EEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          243 ------VEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       243 ------i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                            +++.....  ......+...+..++|+|+|+++.++..+...+.+|+..+++++..
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE
Confidence                  33332221  1234467778999999999999998887776699999999988754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.2e-13  Score=117.94  Aligned_cols=158  Identities=10%  Similarity=0.115  Sum_probs=114.6

Q ss_pred             cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE----EEEeecCCceEEEEEeCC---eEEEEE-CCeEE
Q 022387          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRD---RIIVVL-EQKIF  197 (298)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~----~~~~~~~~~v~~v~~~~~---~l~v~~-~~~I~  197 (298)
                      |...|..+.++++++.|++++       .|++|+|||++++..    ...+.+...|.+++|+++   .++++. ++.|+
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s-------~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITS-------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEE-------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEE-------CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            677899999999999999988       789999999876543    334456779999999753   344444 58999


Q ss_pred             EEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-----eEeeccc--ccceeEEEECCCC
Q 022387          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAH--DSRIACFALTQDG  270 (298)
Q Consensus       198 iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H--~~~V~~l~fspdg  270 (298)
                      +|++...........+........+..... ..++ +++.++.+++||.....     ......|  ......+.+.+++
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGD-DKLI-AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEE-EEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeccccccccccccccccccccccccccc-cccc-ccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            999987777666665554444444443333 3444 37999999999975422     1122232  3346677888999


Q ss_pred             CEEEEEeCCCCEEEEEECCCCcE
Q 022387          271 QLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       271 ~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ..+++++.|+. |++||+..++.
T Consensus       161 ~~~~~~~~d~~-i~~~~~~~~~~  182 (342)
T d1yfqa_         161 SRLIVGMNNSQ-VQWFRLPLCED  182 (342)
T ss_dssp             SEEEEEESTTE-EEEEESSCCTT
T ss_pred             CceeeecCCCc-EEEEecccCcc
Confidence            99999999999 99999987754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=4.1e-12  Score=110.49  Aligned_cols=202  Identities=14%  Similarity=0.070  Sum_probs=125.5

Q ss_pred             EEEEEcCCCCEEEEEc----------C-CeEEEEEcCCCceEEEEeee------cCCceEEEEEecCCCEEEEEeCCCCC
Q 022387           89 LHISFNQDHGCFAAGT----------D-HGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDP  151 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs----------~-~gi~vw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (298)
                      ..++|||||++|++.+          . +.+++||..+.+........      .......+.++.++..++++..+   
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---  126 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---  126 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC---
Confidence            3689999999887643          2 34789999998766554431      01122345678888888777644   


Q ss_pred             CCCCCeEEEEeCCCCcEEEEeecCCce--------EEEEEeCC-------------------------------------
Q 022387          152 QYPLNKVMIWDDHQSRCIGELSFRSEV--------RSVKLRRD-------------------------------------  186 (298)
Q Consensus       152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v--------~~v~~~~~-------------------------------------  186 (298)
                        .+..+.+||..+++.+..+......        ..+.+.++                                     
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (355)
T d2bbkh_         127 --PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ  204 (355)
T ss_dssp             --SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred             --CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC
Confidence              4578999999998877665432211        11111111                                     


Q ss_pred             ---eEEEEE-CCeEEEEEcCCCeE--EEEEeccC----------CCcceEEEEeCCCCeEEEEe-------cCCCceEEE
Q 022387          187 ---RIIVVL-EQKIFVYNFADLKL--LHQIETIA----------NPKGLCAVSQGVGSLVLVCP-------GLQKGQVRV  243 (298)
Q Consensus       187 ---~l~v~~-~~~I~iwd~~~~~~--i~~~~~~~----------~~~~~~~~s~~~d~~~la~s-------Gs~dg~v~i  243 (298)
                         .++.+. ++.+++|++...+.  +.....+.          .....+++++++...+++..       ......|.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence               222232 46888888865543  11111111          11234566665533333211       112347888


Q ss_pred             EEcCCcceE-eecccccceeEEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          244 EHYASKRTK-FIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       244 ~~~~~~~~~-~~~~H~~~V~~l~fspdg~--~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ||..+.+.. .+. +...+.+++|+|||+  ++++++.|++ |+|||+++|++++++
T Consensus       285 ~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~-i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         285 LDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGEELRSV  339 (355)
T ss_dssp             EETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEE
T ss_pred             EeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCE-EEEEECCCCCEEEEE
Confidence            998876554 443 456689999999997  5678888998 999999999998875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=1.2e-11  Score=109.16  Aligned_cols=201  Identities=8%  Similarity=-0.020  Sum_probs=122.3

Q ss_pred             EEEEcCCCCEEEEEc-----------CCeEEEEEcCCCceEEEEeee------cCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        90 ~v~fs~dg~~lasgs-----------~~gi~vw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .++|+|||++|++.+           ++.|++||..+.+........      .......+.+++++..++++..     
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~-----  143 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF-----  143 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC-----
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC-----
Confidence            489999999888754           244889999998876655431      0111234678899988887763     


Q ss_pred             CCCCeEEEEeCCCCcEEEEeecCCce--------EEEEEeC--------------------------------------C
Q 022387          153 YPLNKVMIWDDHQSRCIGELSFRSEV--------RSVKLRR--------------------------------------D  186 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~~~~~~~~~~v--------~~v~~~~--------------------------------------~  186 (298)
                       .++++.+||+.+++.+..+......        ..+.+++                                      +
T Consensus       144 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         144 -GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             -SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             -CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence             4689999999999887776543211        0011111                                      0


Q ss_pred             eEEE-EECCeEEEEEcCCCeEEEEEec--cC----------CCcceEEEEeCCCCeEEEEec------CCCceEEEEEcC
Q 022387          187 RIIV-VLEQKIFVYNFADLKLLHQIET--IA----------NPKGLCAVSQGVGSLVLVCPG------LQKGQVRVEHYA  247 (298)
Q Consensus       187 ~l~v-~~~~~I~iwd~~~~~~i~~~~~--~~----------~~~~~~~~s~~~d~~~la~sG------s~dg~v~i~~~~  247 (298)
                      ...+ ...+.+.++++...+.......  ..          .....++++++++..+++...      .....|.+||..
T Consensus       223 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             TEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             cEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence            1111 1224455555543332211110  00          011245666665433333211      112357788888


Q ss_pred             CcceEeecccccceeEEEECCCCC--EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          248 SKRTKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       248 ~~~~~~~~~H~~~V~~l~fspdg~--~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +.+......+...+..++|||||+  ++++++.|++ |+|||..+|++++++
T Consensus       303 t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         303 VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSV  353 (368)
T ss_dssp             SCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEEC
T ss_pred             CCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEE
Confidence            766443333556799999999997  4678888998 999999999999875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=8.7e-11  Score=100.40  Aligned_cols=185  Identities=9%  Similarity=0.008  Sum_probs=126.1

Q ss_pred             CEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387           98 GCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (298)
Q Consensus        98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~  175 (298)
                      +||++++. +.|.|||+++.+.+...... +......+.+++++..+++++.      .++.|.+||+.+++.+..+...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~------~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEEEecC
Confidence            47888887 66999999999877666542 2334567888888888766653      3689999999999988877654


Q ss_pred             C------ceEEEEEeCC--eEEEEE-------------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387          176 S------EVRSVKLRRD--RIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (298)
Q Consensus       176 ~------~v~~v~~~~~--~l~v~~-------------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s  234 (298)
                      .      .+..+.++++  .++++.             +..+.+||..+++.+..+..+.. ...++++++  +.++++ 
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~s~d--g~~l~~-  151 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-ITMLAWARD--GSKLYG-  151 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CCCEEECTT--SSCEEE-
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-ceEEEEcCC--CCEEEE-
Confidence            2      2345677764  344332             35899999999999888876544 334555554  455553 


Q ss_pred             cCCCceEEEEEc-----------------------------------------------------------------CCc
Q 022387          235 GLQKGQVRVEHY-----------------------------------------------------------------ASK  249 (298)
Q Consensus       235 Gs~dg~v~i~~~-----------------------------------------------------------------~~~  249 (298)
                      ++.+  +.+|+.                                                                 ...
T Consensus       152 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         152 LGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            3322  333332                                                                 211


Q ss_pred             ceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          250 RTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       250 ~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ...  .+..|...+.+++++|++.+++.+  |+. |++||+.+++++++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRV  276 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEE
T ss_pred             cEEEEEecCCCcceEEEEecccceEEEEc--ccc-EEEEECCCCcEEEEE
Confidence            111  233456678888999999998877  577 999999999988753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.4e-08  Score=84.93  Aligned_cols=183  Identities=9%  Similarity=0.083  Sum_probs=119.7

Q ss_pred             EEEEcC-CeEEEEEcCCCceE-EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE----EEee
Q 022387          100 FAAGTD-HGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI----GELS  173 (298)
Q Consensus       100 lasgs~-~gi~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~----~~~~  173 (298)
                      ++++++ +.|+||+++..+.+ ....+.+.+.+..+.+++++..|++++.      .|+.|++|++......    ....
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEeeecc
Confidence            345544 77999999765432 2232335777888999999998876663      4699999998765422    2333


Q ss_pred             cCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEec--cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC
Q 022387          174 FRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (298)
Q Consensus       174 ~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~--~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~  247 (298)
                      ....+..++++++  .++++.  ++.|.+|+............  +......+.+++++  .++++.+..+..|.+|+..
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc--eeeeccccccceeeEEEec
Confidence            4456778899875  566665  36899999876665554443  22333445555554  6666556667788888876


Q ss_pred             CcceE-------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          248 SKRTK-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       248 ~~~~~-------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      .....       ....+...++.++|++++.++...........+|++..
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc
Confidence            53211       11233456789999999988877765544488988654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=7.9e-09  Score=89.11  Aligned_cols=195  Identities=10%  Similarity=0.004  Sum_probs=124.3

Q ss_pred             EEEEEcCCCCEEEEEc------CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC---CCCCCeEE
Q 022387           89 LHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP---QYPLNKVM  159 (298)
Q Consensus        89 ~~v~fs~dg~~lasgs------~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~v~  159 (298)
                      .-.+.+|||+.+++..      .+++.+||.++.+.+.+...   +....+.+++++..+++++.....   ...++.|+
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            3345689999887653      23478999999887666653   444468899999988776521100   00357899


Q ss_pred             EEeCCCCcEEEEeecCC--------ceEEEEEeCC--eEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC
Q 022387          160 IWDDHQSRCIGELSFRS--------EVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~--------~v~~v~~~~~--~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~  226 (298)
                      +||..+++.+.++....        ....+.|+++  .++++.   +..+.+|+..+++.+.++..+...   . ..+.+
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~  157 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY---H-IFPTA  157 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE---E-EEEEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc---e-EeecC
Confidence            99999999888765421        2234667664  455543   368999999999998887754221   1 11112


Q ss_pred             CCeEEEEecCCCceEEEEEcC-CcceE------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          227 GSLVLVCPGLQKGQVRVEHYA-SKRTK------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       227 d~~~la~sGs~dg~v~i~~~~-~~~~~------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      ....+++  +.||...++... .....      ....+...+...++++++..++.++.+++ +++|++..++.
T Consensus       158 ~~~~~~~--~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~  228 (355)
T d2bbkh_         158 PDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSGDA  228 (355)
T ss_dssp             TTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTSSC
T ss_pred             CcceEEE--cCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCe-EEEEecCCCcE
Confidence            2233332  344444443222 11111      12245556778889999999999999999 99999998764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=1.2e-08  Score=92.38  Aligned_cols=76  Identities=13%  Similarity=0.019  Sum_probs=54.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC---------Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387           83 SPPPTLLHISFNQDHGCFAAGTD---------HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (298)
Q Consensus        83 ~~~~~V~~v~fs~dg~~lasgs~---------~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (298)
                      .+...|.++.|||||++||.+++         ++ +.|||+++++... ... +...+..+.+++++..+|.+.      
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~~-~~~~~~~~~~SPDG~~ia~~~------  130 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYVW------  130 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEEE------
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-ccc-CCccccccccccCcceeeEee------
Confidence            34557999999999999998864         12 5689998876432 222 466788889999999999876      


Q ss_pred             CCCCeEEEEeCCCCcE
Q 022387          153 YPLNKVMIWDDHQSRC  168 (298)
Q Consensus       153 ~~d~~v~iWD~~~~~~  168 (298)
                        ++.+.+|+..+++.
T Consensus       131 --~~~l~~~~~~~g~~  144 (470)
T d2bgra1         131 --NNDIYVKIEPNLPS  144 (470)
T ss_dssp             --TTEEEEESSTTSCC
T ss_pred             --cccceEEECCCCce
Confidence              35566666655543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.93  E-value=4.6e-08  Score=83.20  Aligned_cols=149  Identities=11%  Similarity=0.042  Sum_probs=104.3

Q ss_pred             ecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC--CceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEE
Q 022387          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQ  209 (298)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~  209 (298)
                      +.+++++++++       .+++|.+||+.+++.+.++...  ..+.++.|+++  .++++.  ++.|.+||+.+++.+.+
T Consensus         5 ~~~~~~l~~~~-------~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           5 KAGHEYMIVTN-------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CTTCEEEEEEE-------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCCcEEEEEc-------CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            44566777777       6799999999999999888753  35778999886  344554  47999999999999988


Q ss_pred             EeccCCC------cceEEEEeCCCCeEEEEec-----------CCCceEEEEEcCCcce-Eeeccc--ccceeEEEECCC
Q 022387          210 IETIANP------KGLCAVSQGVGSLVLVCPG-----------LQKGQVRVEHYASKRT-KFIMAH--DSRIACFALTQD  269 (298)
Q Consensus       210 ~~~~~~~------~~~~~~s~~~d~~~la~sG-----------s~dg~v~i~~~~~~~~-~~~~~H--~~~V~~l~fspd  269 (298)
                      +......      ...+++++  |+.++++++           ..++.+.+|+...... ..+..|  ...+..+.++++
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~--DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             ecccccccccCCceEEEEEec--CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            8754332      22345554  445555432           2467788888765442 233333  345778888899


Q ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          270 GQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       270 g~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +++++++   +. +.+|++.+++.++++
T Consensus       156 ~~~~~~~---~~-~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         156 GSLYVAG---PD-IYKMDVKTGKYTVAL  179 (346)
T ss_dssp             SCEEEES---SS-EEEECTTTCCEEEEE
T ss_pred             CEEEEeC---Cc-ceEEEccCCCEEEEE
Confidence            9877754   44 889999999887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.81  E-value=2.2e-07  Score=80.53  Aligned_cols=162  Identities=9%  Similarity=0.005  Sum_probs=109.4

Q ss_pred             CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-----------C
Q 022387          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-----------E  193 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-----------~  193 (298)
                      .+.+..+.+++++..+++.....  ....+.|.+||..+++.+.++..... ..+.|+++  .++++.           +
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~--~~~~~~v~v~D~~tg~~~~~~~~~~~-~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAH--HSAIIQQWVLDAGSGSILGHVNGGFL-PNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccc--cCCCceEEEEECCCCCEEEEEeCCCC-ccEEEcCCCCEEEEEeecCCcccccccc
Confidence            45566677788888776654221  01346799999999999988765442 35778775  444443           2


Q ss_pred             CeEEEEEcCCCeEEEEEeccCCCc-------ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEE
Q 022387          194 QKIFVYNFADLKLLHQIETIANPK-------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFAL  266 (298)
Q Consensus       194 ~~I~iwd~~~~~~i~~~~~~~~~~-------~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~f  266 (298)
                      +.|.+||..+++.+..+..+....       ..+.+++++...+++ ....++.+.+|+......   ..|...+.++.|
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  172 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFF-QFAAGPAVGLVVQGGSSD---DQLLSSPTCYHI  172 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEE-EEcCCCceEEeeccCCeE---EEEeccceeEEE
Confidence            679999999999988887654432       234566665433333 234456666677655432   345556789999


Q ss_pred             CCCCC-EEEEEeCCCCEEEEEECCCCcEEEe
Q 022387          267 TQDGQ-LLATSSTKGTLVRIFNTLDGTLLQE  296 (298)
Q Consensus       267 spdg~-~lAt~S~Dgt~IrIWd~~tg~~l~~  296 (298)
                      +|+|+ .+++.+.|++ +.+|+..+++..+.
T Consensus       173 s~~g~~~~v~~~~dg~-~~~~~~~~~~~~~~  202 (373)
T d2madh_         173 HPGAPSTFYLLCAQGG-LAKTDHAGGAAGAG  202 (373)
T ss_pred             ecCCCcEEEEEcCCCe-EEEEEcCCceeeEE
Confidence            99986 4578899999 99999998877643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.78  E-value=7.3e-08  Score=86.75  Aligned_cols=200  Identities=10%  Similarity=-0.021  Sum_probs=128.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC--CC-------
Q 022387           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--YP-------  154 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------  154 (298)
                      ..+....++|||++|.+...  +.+.++|+++++.....+.........+.+.++++...++..++...  -.       
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            35666777899999877653  55889999999876655542345677778887777544433222110  00       


Q ss_pred             ---CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-------------------------------------
Q 022387          155 ---LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-------------------------------------  192 (298)
Q Consensus       155 ---d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-------------------------------------  192 (298)
                         ...+..+|..+.+...++........+.++++  .+++..                                     
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~  231 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNF  231 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCC
T ss_pred             ccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCE
Confidence               12356688888888777766655555666543  222221                                     


Q ss_pred             -----CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc---------eEeecccc
Q 022387          193 -----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------TKFIMAHD  258 (298)
Q Consensus       193 -----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~---------~~~~~~H~  258 (298)
                           ++.+.+++....+.+..+..+..|.+ +.+++  |+.+++++|..+++|.+||++.-.         ...+.++.
T Consensus       232 ~~v~~~~v~vvd~~~~~~v~~~IPvgksPhG-v~vSP--DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         232 KTIGDSKVPVVDGRGESEFTRYIPVPKNPHG-LNTSP--DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             BCCTTCCCCEEECSSSCSSEEEECCBSSCCC-EEECT--TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             EEeCCCCcEEEEcccCCceEEEEeCCCCccC-ceECC--CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence                 13444454555566777777766654 45555  558888789999999999986411         01122221


Q ss_pred             c---ceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          259 S---RIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       259 ~---~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      .   .....+|+++|..+.|.+.|.. |..|++.
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~-v~kw~~~  341 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQ-VCKWNIA  341 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHH
T ss_pred             ccccCcccceecCCceEEEcccccce-EEEeccc
Confidence            1   1344689999999999999998 9999974

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.3e-05  Score=65.89  Aligned_cols=201  Identities=12%  Similarity=0.028  Sum_probs=112.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-Ce---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           84 PPPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~~lasgs~-~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      +...+..-+|||||++||-... .+   +.+.+...........  +........+++++..+++.....    ....+.
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~i~~~~~~~----~~~~~~  110 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKT----GSLNLY  110 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEECTT----SSCEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee--eecccccceecCCCCeeeEeeecC----Ccccee
Confidence            3456888999999999996654 33   3344555544433333  356677788899998888876432    112233


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEe--CCeEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLR--RDRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~--~~~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      .+.....................+.  ...+.....    ..|.++++...... .+...  ..........+++..+++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEE
T ss_pred             ecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecc--cccccccccccccceeEE
Confidence            3444334333333322222222333  233333332    36666676554322 22222  122333344555577776


Q ss_pred             ecCCCceEEEEEc--CCcceEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCcEE
Q 022387          234 PGLQKGQVRVEHY--ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLL  294 (298)
Q Consensus       234 sGs~dg~v~i~~~--~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~~l  294 (298)
                      .....|...++..  ..... .+..+........|||||++||-.+..+  ..|.++++..++..
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             EeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            5666666666444  33333 3444566778889999999988655432  23889998877543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.58  E-value=2.9e-05  Score=65.61  Aligned_cols=191  Identities=12%  Similarity=0.041  Sum_probs=116.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEE-EEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF-RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      -+..++++|||+++++...++ +||.+++..... ...  ..+....+.+..++++++...       ..+.+.+|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~-~I~~i~p~g~~~~~~~--~~~~~~gla~~~dG~l~v~~~-------~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVG-EIVSITPDGNQQIHAT--VEGKVSGLAFTSNGDLVATGW-------NADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-EEEEECTTCCEEEEEE--CSSEEEEEEECTTSCEEEEEE-------CTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCC-EEEEEeCCCCEEEEEc--CCCCcceEEEcCCCCeEEEec-------CCceEEEEEecc
Confidence            588899999999999888755 455555543322 223  256677888888888666554       335577776543


Q ss_pred             C--cEEE--EeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEecc--------CCCcceEEEEeCCCCeE
Q 022387          166 S--RCIG--ELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI--------ANPKGLCAVSQGVGSLV  230 (298)
Q Consensus       166 ~--~~~~--~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~--------~~~~~~~~~s~~~d~~~  230 (298)
                      .  ....  ..........+.+.++..+...   .+.|..+|.............        ........++.+++..+
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence            2  2222  2222345677888776555444   267888887765543222211        11122345556654333


Q ss_pred             EEEecCCCceEEEEEcCCcc-eE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          231 LVCPGLQKGQVRVEHYASKR-TK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       231 la~sGs~dg~v~i~~~~~~~-~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      +  +.+.++.|..++..... ..  ....+......|+|+++|+++++...+++ |..++...
T Consensus       179 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p~G  238 (302)
T d2p4oa1         179 V--SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPDR  238 (302)
T ss_dssp             E--EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECTTC
T ss_pred             e--ecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECCCC
Confidence            3  36778888877765432 11  22233456788999999999999988998 88887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.58  E-value=3.5e-07  Score=82.18  Aligned_cols=204  Identities=8%  Similarity=-0.008  Sum_probs=132.2

Q ss_pred             CCCCeEEEEEcCCCC--EEEEEcCCeE------------------EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEE
Q 022387           84 PPPTLLHISFNQDHG--CFAAGTDHGF------------------RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA  143 (298)
Q Consensus        84 ~~~~V~~v~fs~dg~--~lasgs~~gi------------------~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (298)
                      ....+..++|+|||+  |++.++++.+                  ..+|..+.+.......  .+....+.+.+++..++
T Consensus       114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~p~~v~~spdGk~a~  191 (441)
T d1qnia2         114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV--DGNLDNTDADYTGKYAT  191 (441)
T ss_dssp             TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEE
T ss_pred             CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec--CCCccceEECCCCCEEE
Confidence            345789999999998  6666666554                  3477777776666554  56677778888888776


Q ss_pred             EEeCCCCCC----------------------------------CCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--
Q 022387          144 LVGGGPDPQ----------------------------------YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--  187 (298)
Q Consensus       144 ~~~~~~~~~----------------------------------~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--  187 (298)
                      +.+......                                  -.++.+.|++......+..+........+.++++.  
T Consensus       192 vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGky  271 (441)
T d1qnia2         192 STCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKY  271 (441)
T ss_dssp             EEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCE
T ss_pred             EEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCE
Confidence            655332100                                  01345666666666677777766666778888764  


Q ss_pred             EEEEE--CCeEEEEEcCCCeE--------EEEEeccC-CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--------
Q 022387          188 IIVVL--EQKIFVYNFADLKL--------LHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------  248 (298)
Q Consensus       188 l~v~~--~~~I~iwd~~~~~~--------i~~~~~~~-~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--------  248 (298)
                      ++++.  +++|.+||+.+.+.        ...+..+. ...+...-.+++++..+. +...|..|.-|++..        
T Consensus       272 l~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yt-s~~~ds~v~kw~~~~~~~~~~~~  350 (441)
T d1qnia2         272 FIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYT-TLFIDSQVCKWNIADAIKHYNGD  350 (441)
T ss_dssp             EEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEE-EETTTTEEEEEEHHHHHHHHTTC
T ss_pred             EEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEE-cccccceEEEeccchhhhhhccC
Confidence            44443  47999999865321        01111111 111233445677777776 588999999999741        


Q ss_pred             --cceE-ee-----cccccceeEEEECCCCCEEEEE---eCCCC---------EEEEEECCC
Q 022387          249 --KRTK-FI-----MAHDSRIACFALTQDGQLLATS---STKGT---------LVRIFNTLD  290 (298)
Q Consensus       249 --~~~~-~~-----~~H~~~V~~l~fspdg~~lAt~---S~Dgt---------~IrIWd~~t  290 (298)
                        ..+. .+     .+|...+.+.+|+|||+||+++   |.|+-         .-+|.|+..
T Consensus       351 ~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~  412 (441)
T d1qnia2         351 RVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISG  412 (441)
T ss_dssp             CCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSS
T ss_pred             CCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecC
Confidence              1121 22     5899999999999999999999   76762         146677763

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.56  E-value=8.6e-05  Score=61.89  Aligned_cols=201  Identities=15%  Similarity=0.223  Sum_probs=121.1

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-c-CC---ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387           87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-R-GG---GIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  160 (298)
                      .-+.|++++||+++++-.. +-|++|+.+- +.+...... . .+   ....+....+....+++..+     ..+.|.+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccC-----Ccccccc
Confidence            3578999999998777654 6688998652 222222100 0 00   11223333333333333322     2356777


Q ss_pred             EeCCCCcEEEEeecC--CceEEEEEeCC-eEEEEEC--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          161 WDDHQSRCIGELSFR--SEVRSVKLRRD-RIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       161 WD~~~~~~~~~~~~~--~~v~~v~~~~~-~l~v~~~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ++. .+.....+...  .....+++.++ .+.++..  +.+.+++. +++.+.++...........+..++++.++++ .
T Consensus        98 ~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~-d  174 (279)
T d1q7fa_          98 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-D  174 (279)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE-E
T ss_pred             ccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEee-e
Confidence            775 45555555432  34566777654 3444433  56777764 4666777755444444555666667777764 7


Q ss_pred             CCCceEEEEEcCCcceEeec--ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~~~~~~--~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      ...+.|.+++.+.+.+.++.  ++......|++.++|+++++-+.++..|++|+ .+|+.+.++
T Consensus       175 ~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~  237 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISAL  237 (279)
T ss_dssp             GGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEE
T ss_pred             ccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEE
Confidence            77889999998877666552  45556899999999998888655443399998 568776553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.46  E-value=7.3e-07  Score=80.27  Aligned_cols=113  Identities=10%  Similarity=-0.010  Sum_probs=82.9

Q ss_pred             EEEEEeCCeEEE-EECCeEEEEEcCCCeEEEEEeccC-----CCcceEEEEeCCCCeEEEEec--------CCCceEEEE
Q 022387          179 RSVKLRRDRIIV-VLEQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPG--------LQKGQVRVE  244 (298)
Q Consensus       179 ~~v~~~~~~l~v-~~~~~I~iwd~~~~~~i~~~~~~~-----~~~~~~~~s~~~d~~~la~sG--------s~dg~v~i~  244 (298)
                      ..+.|.++.-++ ..++.|.+||+.+++....+..+.     ..+....|+  ||+.+|+++.        +.+|.+.+|
T Consensus        20 ~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S--pDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC--CCCCEEEEEECCcceeeeccCceEEEE
Confidence            345555543333 345789999999888765554332     233444455  5557777532        346788899


Q ss_pred             EcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387          245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (298)
Q Consensus       245 ~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~  295 (298)
                      |+.++.+..+..|...+..+.|||||++||..+ |+. +.+|+..+|+..+
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-l~~~~~~~g~~~~  146 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYR  146 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEee-ccc-ceEEECCCCceee
Confidence            999998888999999999999999999999976 666 9999999987654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=9.5e-05  Score=62.02  Aligned_cols=140  Identities=12%  Similarity=0.161  Sum_probs=98.5

Q ss_pred             CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEE-e
Q 022387          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL-R  184 (298)
Q Consensus       106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~-~  184 (298)
                      ..+.|.|+.......++..  ..+-.  -+.+....+|+-++        .++.++|+++.+.+..+.+..+|.-+.| +
T Consensus        45 ~~VvIidl~n~~~~~Rrpi--~AdsA--IMhP~~~IiALrag--------~~LQiFnletK~klks~~~~e~VvfWkWis  112 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI--SADSA--IMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  112 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC--CCSEE--EECSSSSEEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEESS
T ss_pred             ceEEEEECCCCCcceeccc--chhhh--hcCCCCcEEEEecC--------CeEEEEehhHhhhhceEEcCCCcEEEEecC
Confidence            4578999977665556654  33333  34577888888763        6799999999999999999999988887 5


Q ss_pred             CCeEEEEECCeEEEEEcC-CCeEEEEEeccCC--CcceEEEEeCCCCeEEEEec------CCCceEEEEEcCCcceEeec
Q 022387          185 RDRIIVVLEQKIFVYNFA-DLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPG------LQKGQVRVEHYASKRTKFIM  255 (298)
Q Consensus       185 ~~~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sG------s~dg~v~i~~~~~~~~~~~~  255 (298)
                      ++.+.+.++..|+-|++. +.++.+.+..|..  ...++.+..+++..+++..|      ...|.+.+|..+.+....+.
T Consensus       113 ~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         113 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            678888899999999994 3457777776543  23456666777777766654      23466777776544333344


Q ss_pred             cc
Q 022387          256 AH  257 (298)
Q Consensus       256 ~H  257 (298)
                      +|
T Consensus       193 Gh  194 (327)
T d1utca2         193 GH  194 (327)
T ss_dssp             CS
T ss_pred             ce
Confidence            44

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.34  E-value=9.2e-06  Score=70.36  Aligned_cols=195  Identities=7%  Similarity=-0.066  Sum_probs=124.3

Q ss_pred             CeEEEEEcCCCCE--EEE-EcCCe---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC---CCCCCCCe
Q 022387           87 TLLHISFNQDHGC--FAA-GTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNK  157 (298)
Q Consensus        87 ~V~~v~fs~dg~~--las-gs~~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~  157 (298)
                      +...++..+||+.  ++. ....+   +.+||.++.+.+.....   +....+.+++++..+++++...   .....|++
T Consensus        21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~---~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG---AFLSLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE---CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC---CCCCcceECCCCCEEEEEcccCccccccccCCe
Confidence            4444556777774  333 22222   44667777776655553   3334577899998888765211   11124688


Q ss_pred             EEEEeCCCCcEEEEeecCC--------ceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC
Q 022387          158 VMIWDDHQSRCIGELSFRS--------EVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (298)
Q Consensus       158 v~iWD~~~~~~~~~~~~~~--------~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~  225 (298)
                      |++||..+++.+..+..+.        ....+.|+++  .++++.  .+.|.+||+.+.+.+..+..+...    .+.+.
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~~  173 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF----HIHPG  173 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC----CCEEE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc----eEccC
Confidence            9999999999888776421        1234677764  566664  479999999999999888765433    22333


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcce-------EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRT-------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~-------~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~  293 (298)
                      +...+++  .+.||.+.+++......       ..+..+...+..+.+.+++..+.+.  ++. +.++++..++.
T Consensus       174 ~~~~~v~--~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~-v~~~~~~~~~~  243 (368)
T d1mdah_         174 AAATHYL--GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASS-ILQGDIPAAGA  243 (368)
T ss_dssp             ETTEEEC--CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSC-CEEEECCSSCC
T ss_pred             CCceEEE--EcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCC-EEEEeecCCce
Confidence            3334443  68889888877654321       1234566677888999998877765  455 67777766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.33  E-value=1.3e-05  Score=69.92  Aligned_cols=178  Identities=9%  Similarity=-0.002  Sum_probs=94.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEE-EEeee---cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIF-RRDFE---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        86 ~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+.++.|+|||++|++...  +.+.+|+.+....+. .....   .......+.+.+++..+.++..      .+++|.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e------~~~~V~  218 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME------AGNRIC  218 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET------TTTEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc------CCCEEE
Confidence            35789999999998887764  667788766543322 21111   2445677788888887776663      358899


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC--
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ--  237 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~--  237 (298)
                      +||...+.........                   .+.++.......  .............+..++|+.+|.++...  
T Consensus       219 v~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         219 EYVIDPATHMPVYTHH-------------------SFPLIPPGIPDR--DPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEEECTTTCCEEEEEE-------------------EEESSCTTCCCB--CTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEEecCCCceEEEEee-------------------eecccccccccc--ccccccccCCccceEECCCCCEEEEEcccCC
Confidence            9988665422111100                   000000000000  00000011122233444555666654322  


Q ss_pred             ---CceEEEEEcCCc-ceE---ee---cccccceeEEEECC-CCCEEEEEe-CCCCEEEEEECCCC
Q 022387          238 ---KGQVRVEHYASK-RTK---FI---MAHDSRIACFALTQ-DGQLLATSS-TKGTLVRIFNTLDG  291 (298)
Q Consensus       238 ---dg~v~i~~~~~~-~~~---~~---~~H~~~V~~l~fsp-dg~~lAt~S-~Dgt~IrIWd~~tg  291 (298)
                         .+.|..+..... .+.   .+   .......+.++|+| +|++|+.+. .+++ |.||++...
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~-v~v~~~~~~  342 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW-LEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE-EEEEEEETT
T ss_pred             CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe-EEEEEEeCC
Confidence               223555555432 221   11   11234578899998 899777764 5566 999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.30  E-value=0.00011  Score=63.84  Aligned_cols=186  Identities=9%  Similarity=0.037  Sum_probs=100.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEe-eecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE-----
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI-----  160 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i-----  160 (298)
                      .+..++|++|+++|.+...+++..|.++....+.... ....+....+.+..++..+.++....    ..++|..     
T Consensus        41 ~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~----~~~~v~~~~~~~  116 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ----PPYAVYANPFYK  116 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS----TTCCEEEEEESS
T ss_pred             CCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC----CCCEEEEeEccC
Confidence            4567999999999998888888888776543322221 10122223333344444433333211    1233333     


Q ss_pred             -------EeCCCC-cE---EEE--eecCCceEEEEEeCC--eEEEEEC--CeEEEEEcCC-CeE--EEEEeccCCCcceE
Q 022387          161 -------WDDHQS-RC---IGE--LSFRSEVRSVKLRRD--RIIVVLE--QKIFVYNFAD-LKL--LHQIETIANPKGLC  220 (298)
Q Consensus       161 -------WD~~~~-~~---~~~--~~~~~~v~~v~~~~~--~l~v~~~--~~I~iwd~~~-~~~--i~~~~~~~~~~~~~  220 (298)
                             ..+... ..   ...  .+....+.++.|+++  +++++..  +.|.+|++.. ++.  ...+.......+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence                   332221 11   111  112235788999875  4555543  6899998743 322  22222222222333


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEEcCCcceE---ee-----------------cccccceeEEEECCCCCEEEEE
Q 022387          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FI-----------------MAHDSRIACFALTQDGQLLATS  276 (298)
Q Consensus       221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~-----------------~~H~~~V~~l~fspdg~~lAt~  276 (298)
                      .+.+++++.++.+++..++.|.+|++......   ..                 ..+......|.++|||++|.++
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            44555566666666888999999887654321   10                 0122235689999999998877

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.14  E-value=0.00046  Score=57.87  Aligned_cols=182  Identities=9%  Similarity=-0.078  Sum_probs=103.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEE--EeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      ...+.+++|++||++++++.. +.+.+|+.........  ...........+.+..+++.++.-.       ..+.+..+
T Consensus        67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~-------~~~~i~~~  139 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS-------YRGAIWLI  139 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEET-------TTTEEEEE
T ss_pred             CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecc-------ccccceee
Confidence            347899999999998888765 5566666544322111  1111223344555555665544433       35778788


Q ss_pred             eCCCCcEEEEeec-----------CCceEEEEEeCCeEEEEEC--CeEEEEEcCCCeEEE---EEeccCCCcceEEEEeC
Q 022387          162 DDHQSRCIGELSF-----------RSEVRSVKLRRDRIIVVLE--QKIFVYNFADLKLLH---QIETIANPKGLCAVSQG  225 (298)
Q Consensus       162 D~~~~~~~~~~~~-----------~~~v~~v~~~~~~l~v~~~--~~I~iwd~~~~~~i~---~~~~~~~~~~~~~~s~~  225 (298)
                      |...+........           ......+.+..+.+.++..  +.|..+++.......   .+.....+ ..+++  +
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-dgia~--d  216 (302)
T d2p4oa1         140 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-DDFAF--D  216 (302)
T ss_dssp             ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-SSEEE--B
T ss_pred             eccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCC-cceEE--C
Confidence            8776653322111           1134566777787777754  688888875432221   12222222 23444  4


Q ss_pred             CCCeEEEEecCCCceEEEEEcCCcceE--eecccccceeEEEE---CCCCCEEEEEe
Q 022387          226 VGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFAL---TQDGQLLATSS  277 (298)
Q Consensus       226 ~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~f---spdg~~lAt~S  277 (298)
                      .++.++++ ...++.|..++-..+...  .....-..+++++|   ++|++.|..++
T Consensus       217 ~dG~l~va-~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         217 VEGNLYGA-THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             TTCCEEEE-CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCEEEE-EcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            45566663 566778888776655333  23333456899999   67887665443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=0.00037  Score=57.23  Aligned_cols=192  Identities=8%  Similarity=-0.056  Sum_probs=105.5

Q ss_pred             CeEEEEEcCCCCEEEEE-cCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFAAG-TDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasg-s~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .-..|++.+||++.++. +..+ +..++....... ...+........+++..+++.. ++..      ..+.+++++..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~i~-v~d~------~~~~i~~~~~~   86 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVY-VTDF------NNRVVTLAAGS   86 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCCEE-EEET------TTEEEEECTTC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCCEE-Eeee------eeceeeeeeec
Confidence            34689999999966554 3444 445544433221 1111001223345555555543 3331      23566766666


Q ss_pred             CCcEEEEeecCCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387          165 QSRCIGELSFRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       165 ~~~~~~~~~~~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      +...+...........+++.++ .+.++.  .+.+..++...................+++  ++++.++++ ...++.|
T Consensus        87 ~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~--~~~g~~~v~-~~~~~~i  163 (260)
T d1rwia_          87 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV--DNSGNVYVT-DTDNNRV  163 (260)
T ss_dssp             SCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE--CTTCCEEEE-EGGGTEE
T ss_pred             cceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeee--cCCCCEeee-ccccccc
Confidence            6555544443455677888765 444443  256666665433221111111122233444  445565553 5667788


Q ss_pred             EEEEcCCcceEeec-ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387          242 RVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (298)
Q Consensus       242 ~i~~~~~~~~~~~~-~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t  290 (298)
                      ..++.+......+. ..-.....|++.++|+++++....+. |..++...
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~  212 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGS  212 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTC
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCC
Confidence            88887765544432 45566899999999999999988888 77776544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.90  E-value=0.0047  Score=51.99  Aligned_cols=202  Identities=9%  Similarity=0.030  Sum_probs=111.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      .+..++|.++|++..+-...+ |..|+.+..+...... ........+.+..++++++...++..   ..+.+...|...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~---~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCc---cceeEEEEcCCC
Confidence            567899999999777766655 5555555544322221 12445566777777776655443211   234455556655


Q ss_pred             CcEEEEeecC---CceEEEEEeCCeEEEEEC---------CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          166 SRCIGELSFR---SEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       166 ~~~~~~~~~~---~~v~~v~~~~~~l~v~~~---------~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      ..........   .....+.+.++.-+..++         +.+..++.. ++.+..+........-+++++  |+..|.+
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~--dg~~lyv  193 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALST--DEKVLWV  193 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECT--TSSEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeecc--ccceEEE
Confidence            5544333322   235566776654333321         234444433 333333322111112345544  4444433


Q ss_pred             ecCCCceEEEEEcCCc--ceE----e---ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          234 PGLQKGQVRVEHYASK--RTK----F---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       234 sGs~dg~v~i~~~~~~--~~~----~---~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +-+..+.|..++++..  ...    .   ..........|++..+|++.++....+. |.+|| .+|+.+.++
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i  264 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQI  264 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEE
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEE
Confidence            4677788888876532  111    1   1111233678999999999999888898 99999 578887764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.87  E-value=0.0028  Score=53.41  Aligned_cols=198  Identities=12%  Similarity=0.113  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCC----ceEEEEEecCCCEEEEEeCCCCC--------CCC
Q 022387           88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGPDP--------QYP  154 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------~~~  154 (298)
                      -..++|.+||..|+++.. .++..++.+.......... .++    ...-+.+..++++.++-..+...        .-.
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~-~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecc-ccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            468999999987666654 7777777765433221111 011    12334555566555443221100        001


Q ss_pred             CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC------eEEEEE--CCeEEEEEcCCCeEEEE---EeccC--CCcceEE
Q 022387          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD------RIIVVL--EQKIFVYNFADLKLLHQ---IETIA--NPKGLCA  221 (298)
Q Consensus       155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~------~l~v~~--~~~I~iwd~~~~~~i~~---~~~~~--~~~~~~~  221 (298)
                      .+.|..++.. ++.......-.....+.|+++      .+.++.  .+.|..||+.....+..   +....  .....--
T Consensus       152 ~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             CceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            2344444432 222222221122345666543      355554  36888888743222221   11111  1111113


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCC-EEEEEeCCCCEEEEEECC
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~  289 (298)
                      +..+.++.+.++ ....|.|.+++-+.... ..+......+++|+|.||++ +++|.+..|+ |..+++.
T Consensus       231 iavD~~GnlyVa-~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~-i~~~~~~  298 (314)
T d1pjxa_         231 MDFDEDNNLLVA-NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQ  298 (314)
T ss_dssp             EEEBTTCCEEEE-EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECS
T ss_pred             eEEecCCcEEEE-EcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCc-EEEEECC
Confidence            444566666663 55678898988776543 35566667899999999996 7788888888 7777755

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=0.0011  Score=54.34  Aligned_cols=190  Identities=7%  Similarity=0.008  Sum_probs=107.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCeEE-EEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~gi~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ....++++++|+++++.....+. +++-......  ...........+.+..++++.+.-.       ....+.+++...
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~--~~~~~~~~p~~iavd~~g~i~v~d~-------~~~~~~~~~~~~  128 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV--LPFDGLNYPEGLAVDTQGAVYVADR-------GNNRVVKLAAGS  128 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE--CCCCSCCSEEEEEECTTCCEEEEEG-------GGTEEEEECTTC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceee--eeeeeeeecccccccccceeEeecc-------cccccccccccc
Confidence            34568999999988887776643 4433333222  2211123445566666666544332       234566666544


Q ss_pred             CcEEE-EeecCCceEEEEEeCC-eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387          166 SRCIG-ELSFRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (298)
Q Consensus       166 ~~~~~-~~~~~~~v~~v~~~~~-~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v  241 (298)
                      ..... ..........+++.++ .+.++.  .+.|..+|....... .+.. ........+..++++.+++ +...++.|
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~p~gi~~d~~g~l~v-sd~~~~~i  205 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPF-TDITAPWGIAVDEAGTVYV-TEHNTNQV  205 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCC-SSCCSEEEEEECTTCCEEE-EETTTTEE
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeec-cccCCCccceeeeeeeeee-eecCCCEE
Confidence            33221 1122234456777654 454544  368888887644332 2221 1112234455566667766 36777787


Q ss_pred             EEEEcCCcceEeec-ccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          242 RVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       242 ~i~~~~~~~~~~~~-~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ..++........+. ..-.....|+++++|.++++-..+++ |+.++..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r-I~~i~~~  253 (260)
T d1rwia_         206 VKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR-VVKLTSL  253 (260)
T ss_dssp             EEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTE-EEEECCC
T ss_pred             EEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCE-EEEEeCC
Confidence            77776555444332 23356789999999999998777777 7666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=0.0023  Score=51.66  Aligned_cols=179  Identities=12%  Similarity=0.043  Sum_probs=99.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387           82 SSPPPTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (298)
Q Consensus        82 ~~~~~~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  159 (298)
                      ..+........|+|||+.|+.... .+ ..++.......................+.........+....    ....|.
T Consensus        79 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~  154 (269)
T d2hqsa1          79 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----GRPQVY  154 (269)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----SSCEEE
T ss_pred             eeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceeccccc----CCceEe
Confidence            345567889999999999887654 33 233322222211112111133334445566666666655321    123566


Q ss_pred             EEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEE-C-C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387          160 IWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-E-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (298)
Q Consensus       160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~-~-~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~  233 (298)
                      +.+...+................++++.  ++... . +  .|.+++......  .+...........+++  ||..||+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SP--DG~~i~f  230 (269)
T d2hqsa1         155 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAP--NGTMVIY  230 (269)
T ss_dssp             EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECT--TSSEEEE
T ss_pred             eeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECC--CCCEEEE
Confidence            6777766544433344455566777653  33332 2 3  555666555443  2233333334445555  5566666


Q ss_pred             ecCCC--ceEEEEEcCCcceEeecccccceeEEEECC
Q 022387          234 PGLQK--GQVRVEHYASKRTKFIMAHDSRIACFALTQ  268 (298)
Q Consensus       234 sGs~d--g~v~i~~~~~~~~~~~~~H~~~V~~l~fsp  268 (298)
                      ....+  ..|.+++.+.+....+....+.+...+|||
T Consensus       231 ~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         231 SSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            44433  456678888887777877888899999998

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.77  E-value=0.0069  Score=49.74  Aligned_cols=151  Identities=13%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC---CceEEEEEeCC-eEEEEEC--CeEEEEEcCC
Q 022387          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRD-RIIVVLE--QKIFVYNFAD  203 (298)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~---~~v~~v~~~~~-~l~v~~~--~~I~iwd~~~  203 (298)
                      ...+.+..++..++...       ..+.+.++|.. ++.+..+...   .....+++.++ .+.++..  +.|++||.. 
T Consensus       116 p~~~avd~~G~i~v~~~-------~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-  186 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVEC-------KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-  186 (279)
T ss_dssp             EEEEEECTTSCEEEEET-------TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-
T ss_pred             cceeccccCCcEEEEee-------ccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-
Confidence            34455555555443333       23556666643 4444444322   24556677665 4444432  689999964 


Q ss_pred             CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc--cccceeEEEECCCCCEEEEEeCCCC
Q 022387          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGT  281 (298)
Q Consensus       204 ~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt  281 (298)
                      ++.+.++...........++.++++.++++-...++.|.+++.+.+.+.++..  .......|++.|||+++++ +.+++
T Consensus       187 G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~  265 (279)
T d1q7fa_         187 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR  265 (279)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred             CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCe
Confidence            56666764322222334556666777776433445678888876654544432  2345889999999987765 46888


Q ss_pred             EEEEEECCCC
Q 022387          282 LVRIFNTLDG  291 (298)
Q Consensus       282 ~IrIWd~~tg  291 (298)
                       |++|.+...
T Consensus       266 -v~~fr~~~~  274 (279)
T d1q7fa_         266 -LYIYRYVQL  274 (279)
T ss_dssp             -EEEEECSCC
T ss_pred             -EEEEEeeee
Confidence             999998765

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.53  E-value=0.012  Score=47.18  Aligned_cols=76  Identities=7%  Similarity=-0.086  Sum_probs=47.9

Q ss_pred             EEcCC--CCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387           92 SFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (298)
Q Consensus        92 ~fs~d--g~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~  169 (298)
                      ..|||  |+.+|-.+++-+-+.+++.++.. .+.. +.+......|++++..+|++...... .....|.+.+...++..
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~-~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGSS-LNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEESTT-CCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCCC-CCceEEEEEEecCCceE
Confidence            45799  99999777766666688776543 2221 24556677889999999887532110 01134777777776654


Q ss_pred             E
Q 022387          170 G  170 (298)
Q Consensus       170 ~  170 (298)
                      +
T Consensus        82 ~   82 (281)
T d1k32a2          82 R   82 (281)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.48  E-value=0.02  Score=47.43  Aligned_cols=189  Identities=13%  Similarity=0.031  Sum_probs=106.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeec-CC--ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-GG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW  161 (298)
                      +..+.++++.++|.++++ +.+|+.++|.++.+......... ..  ....+.+..+++..+.......   ..+.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~---~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA---ETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC---CTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc---cccceeEe
Confidence            347889999999987765 56899999998876543332211 11  2334445566665444332111   12345566


Q ss_pred             eCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--CeEEEEEcCC------CeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387          162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--QKIFVYNFAD------LKLLHQIETIANPKGLCAVSQGVGSLVL  231 (298)
Q Consensus       162 D~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~~I~iwd~~~------~~~i~~~~~~~~~~~~~~~s~~~d~~~l  231 (298)
                      ....++.............+.++++  .+.++..  +.|..|++..      .+...-+.........-.+..|.++.+.
T Consensus       134 ~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         134 HVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             EEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             eecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            6666654433333234456777764  3555543  7888888732      1111111111112222344456666666


Q ss_pred             EEecCCCceEEEEEcCCcceEeecccccceeEEEEC-CCC-CEEEEEeC
Q 022387          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDG-QLLATSST  278 (298)
Q Consensus       232 a~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fs-pdg-~~lAt~S~  278 (298)
                      ++ ....|.|..++-+.+.+..+.--...++++||- +|+ .+++|...
T Consensus       214 va-~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         214 NA-RWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EE-EETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ee-eeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            53 455678888887776666555444679999996 775 45566544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.44  E-value=0.023  Score=47.44  Aligned_cols=200  Identities=10%  Similarity=0.047  Sum_probs=109.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-------e-EEEEEcCCCceEEEEeee---cCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387           87 TLLHISFNQDHGCFAAGTDH-------G-FRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs~~-------g-i~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  155 (298)
                      ..-.++|.+||+++++....       + |..|+.++..........   ..+.-..+.+..+++.++++.       ..
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad-------~~   91 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-------MR   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-------TT
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE-------CC
Confidence            45678999999987765432       2 445565555443222110   011233466666777777766       23


Q ss_pred             CeEEEEeCCCCcEEEEe-ecCC----ceEEEEEeCCeEEEEEC--C--------------eEEEEEcC-CCeEEEEEecc
Q 022387          156 NKVMIWDDHQSRCIGEL-SFRS----EVRSVKLRRDRIIVVLE--Q--------------KIFVYNFA-DLKLLHQIETI  213 (298)
Q Consensus       156 ~~v~iWD~~~~~~~~~~-~~~~----~v~~v~~~~~~l~v~~~--~--------------~I~iwd~~-~~~~i~~~~~~  213 (298)
                      +.|...|...+...... ....    ....+.+.++..+..++  +              .=++|.+. +++........
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~  171 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF  171 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCc
Confidence            56888887655332111 1111    23456776653333221  0              11344332 33333222221


Q ss_pred             CCCcceEEEEeCCCC--eEEEEecCCCceEEEEEcCCc-ceE------eecc-cccceeEEEECCCCCEEEEEeCCCCEE
Q 022387          214 ANPKGLCAVSQGVGS--LVLVCPGLQKGQVRVEHYASK-RTK------FIMA-HDSRIACFALTQDGQLLATSSTKGTLV  283 (298)
Q Consensus       214 ~~~~~~~~~s~~~d~--~~la~sGs~dg~v~i~~~~~~-~~~------~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~I  283 (298)
                      .. ..-+++++++++  ..|.++.+..+.|..+++... .+.      .+.+ +......|++..+|+++++....+. |
T Consensus       172 ~~-pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-I  249 (314)
T d1pjxa_         172 QF-PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-I  249 (314)
T ss_dssp             SS-EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-E
T ss_pred             ce-eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-E
Confidence            12 234677776553  234434677888887765422 221      1221 2334678999999999988877887 9


Q ss_pred             EEEECCCCcEEE
Q 022387          284 RIFNTLDGTLLQ  295 (298)
Q Consensus       284 rIWd~~tg~~l~  295 (298)
                      .+||.+.++.+.
T Consensus       250 ~~~dp~~g~~~~  261 (314)
T d1pjxa_         250 EVFGPDGGQPKM  261 (314)
T ss_dssp             EEECTTCBSCSE
T ss_pred             EEEeCCCCEEEE
Confidence            999988776543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0098  Score=52.88  Aligned_cols=203  Identities=7%  Similarity=-0.032  Sum_probs=116.1

Q ss_pred             EEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCC--CCCCCeEEEEeCCCCc
Q 022387           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDHQSR  167 (298)
Q Consensus        92 ~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~iWD~~~~~  167 (298)
                      .|.+|+.++....++.+.+|++.+.+........  ....+....+++++..+++.......  ....+.+.++|+.++.
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            4777887776655566889988776543222211  12244556678888888776542211  0134778999999876


Q ss_pred             EEEEeec---CCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccC-CCc---------------ceEEEEeCC
Q 022387          168 CIGELSF---RSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIA-NPK---------------GLCAVSQGV  226 (298)
Q Consensus       168 ~~~~~~~---~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~-~~~---------------~~~~~s~~~  226 (298)
                      .......   ...+....|+|+  .++.+.++.|.+.+..+++.++...... ..+               .--++-++|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            5432211   123334567664  6666778888888886665544332211 110               013555667


Q ss_pred             CCeEEEEecCCCc---------------------------------eEEEEEcCCcceE-------eecccccceeEEEE
Q 022387          227 GSLVLVCPGLQKG---------------------------------QVRVEHYASKRTK-------FIMAHDSRIACFAL  266 (298)
Q Consensus       227 d~~~la~sGs~dg---------------------------------~v~i~~~~~~~~~-------~~~~H~~~V~~l~f  266 (298)
                      |+..||+.-..+.                                 .+.+++++.+...       ........+..+.|
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W  262 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEE
Confidence            7788887421111                                 2333555433221       11223345788999


Q ss_pred             CCCCCEEEEEeC-C--CCEEEEEECCCCcEE
Q 022387          267 TQDGQLLATSST-K--GTLVRIFNTLDGTLL  294 (298)
Q Consensus       267 spdg~~lAt~S~-D--gt~IrIWd~~tg~~l  294 (298)
                      ++++++++.... +  ...|.++|..+|++.
T Consensus       263 ~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             cCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            999987776532 2  223888999999764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.03  E-value=0.063  Score=44.24  Aligned_cols=191  Identities=7%  Similarity=0.012  Sum_probs=113.2

Q ss_pred             EEEEcCC-CCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387           90 HISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (298)
Q Consensus        90 ~v~fs~d-g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~  167 (298)
                      +..|.+. |.+.-+--. +.|..|+.++.+.. ...+  ...+..+....++++++ ++        .+.+.++|..+++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~--~~~~~~i~~~~dg~l~v-a~--------~~gl~~~d~~tg~   89 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDSKQLI-AS--------DDGLFLRDTATGV   89 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTEEEE-EE--------TTEEEEEETTTCC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC--CCCcEEEEEecCCCEEE-EE--------eCccEEeecccce
Confidence            4568864 454445434 45667777776543 3333  45666776666665544 33        2458999999887


Q ss_pred             EEEEeecC-----CceEEEEEeCCe-EEEEE------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387          168 CIGELSFR-----SEVRSVKLRRDR-IIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (298)
Q Consensus       168 ~~~~~~~~-----~~v~~v~~~~~~-l~v~~------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG  235 (298)
                      ........     ..+..+.+.++. +.+..      .+.-.+|.+.+++....+..... ...++++++  +..+.++.
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~-~Ng~~~s~d--~~~l~~~d  166 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI-PNSICFSPD--GTTGYFVD  166 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS-EEEEEECTT--SCEEEEEE
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC-cceeeecCC--CceEEEee
Confidence            54433321     135566676654 33332      13456677766665444333222 233455544  44444446


Q ss_pred             CCCceEEEEEcCCcc------eE---eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          236 LQKGQVRVEHYASKR------TK---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       236 s~dg~v~i~~~~~~~------~~---~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      +..+.|..++++...      ..   .+..-.+....+++..+|.+.++.-..+. |..|| .+|+++.++
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i  235 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARY  235 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEe
Confidence            778888887764321      11   22334556899999999998888776777 99999 578887764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.002  Score=57.65  Aligned_cols=131  Identities=8%  Similarity=0.057  Sum_probs=75.0

Q ss_pred             CCCeEEEEeCCCCcEEEEeecC----CceEEEEEeCC--eEEEEEC----------CeEEEEEcCCCeEEEEEeccC-C-
Q 022387          154 PLNKVMIWDDHQSRCIGELSFR----SEVRSVKLRRD--RIIVVLE----------QKIFVYNFADLKLLHQIETIA-N-  215 (298)
Q Consensus       154 ~d~~v~iWD~~~~~~~~~~~~~----~~v~~v~~~~~--~l~v~~~----------~~I~iwd~~~~~~i~~~~~~~-~-  215 (298)
                      .++.|.+||+.+++....+...    -.+....++++  .+++..+          +.+.+||+.+++.. .+.... . 
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~~~~~  113 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSN  113 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCS
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-eccCccCCc
Confidence            4578999999887654333321    14566677775  4444443          47889999876642 332221 1 


Q ss_pred             -CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--eecccccc-----------------eeEEEECCCCCEEEE
Q 022387          216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSR-----------------IACFALTQDGQLLAT  275 (298)
Q Consensus       216 -~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~-----------------V~~l~fspdg~~lAt  275 (298)
                       ......+||  |+..+|+  -.++.|.+.+...+...  +..+-...                 -..+-|||||++||.
T Consensus       114 ~~l~~~~wSP--DG~~iaf--v~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf  189 (465)
T d1xfda1         114 AKLQYAGWGP--KGQQLIF--IFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY  189 (465)
T ss_dssp             CCCSBCCBCS--STTCEEE--EETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred             cccceeeecc--CCceEEE--EecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEE
Confidence             122244444  4566665  34566777655443322  21121111                 247889999999999


Q ss_pred             EeCCCCEEEEEECC
Q 022387          276 SSTKGTLVRIFNTL  289 (298)
Q Consensus       276 ~S~Dgt~IrIWd~~  289 (298)
                      ...|.+.|+.+.+.
T Consensus       190 ~~~D~s~V~~~~~~  203 (465)
T d1xfda1         190 AAINDSRVPIMELP  203 (465)
T ss_dssp             EEEECTTSCEEEEC
T ss_pred             EEecccccceeecc
Confidence            87655446666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.69  E-value=0.13  Score=42.68  Aligned_cols=192  Identities=13%  Similarity=0.003  Sum_probs=99.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC---eEEEEEcC--CCceEEEEee-ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387           85 PPTLLHISFNQDHGCFAAGTDH---GFRIYNCD--PFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (298)
Q Consensus        85 ~~~V~~v~fs~dg~~lasgs~~---gi~vw~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  158 (298)
                      ......++|++||+++++...+   ...++..+  .......... .......-+.+..+++..+.-..+.. ....+.+
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~-~~~~g~v  159 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-TNPLGGV  159 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-TBCCEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeeccccccc-ccCccee
Confidence            3467899999999988775431   22344433  3322221111 00122344555666664443221110 0112445


Q ss_pred             EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCC-CeEEEEE----ec-cCCCcceEEEEeCCCC
Q 022387          159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD-LKLLHQI----ET-IANPKGLCAVSQGVGS  228 (298)
Q Consensus       159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~-~~~i~~~----~~-~~~~~~~~~~s~~~d~  228 (298)
                      ..++...+........-.....++|+++  .+.++.  .+.|..|++.. +......    .. ......---+..|.++
T Consensus       160 ~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G  239 (319)
T d2dg1a1         160 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD  239 (319)
T ss_dssp             EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC
T ss_pred             EEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC
Confidence            5555544433222222234566888865  455654  37999999853 2221111    11 1111112234455666


Q ss_pred             eEEEEecCCCceEEEEEcCCcceEeec------ccccceeEEEECCCCCEEEEEeC
Q 022387          229 LVLVCPGLQKGQVRVEHYASKRTKFIM------AHDSRIACFALTQDGQLLATSST  278 (298)
Q Consensus       229 ~~la~sGs~dg~v~i~~~~~~~~~~~~------~H~~~V~~l~fspdg~~lAt~S~  278 (298)
                      .+.++ ...+|.|.+++-+.+.+..+.      .+...+++++|.+++..|.+...
T Consensus       240 ~l~Va-~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         240 NLYVA-MYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEE-EETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CEEEE-EcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            66663 567889999987665554332      34456899999998866655543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.28  E-value=0.0053  Score=49.46  Aligned_cols=70  Identities=13%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             EEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC-CC----CEEEEEECCCCcE
Q 022387          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG----TLVRIFNTLDGTL  293 (298)
Q Consensus       222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~-Dg----t~IrIWd~~tg~~  293 (298)
                      ++|+..|..+|++  .+|.|.+.++..+....+..+.+.+...+|||||++||-.+. ++    ..|.+.+..+|+.
T Consensus         6 ~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           6 LNPDIHGDRIIFV--CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             EEEEEETTEEEEE--ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             cCCCCCCCEEEEE--eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            4566223566653  456788889998888888888888999999999999996532 22    1266777777754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.88  E-value=2  Score=35.15  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      +.-.+|..+.||.-+...++|||+++.+++....+  ...+..+.|. +.+.+++++        +..|.-|+++.
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~--~e~VvfWkWi-s~~~L~lVT--------~taVYHW~~~g  131 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM--TDDVTFWKWI-SLNTVALVT--------DNAVYHWSMEG  131 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC--SSCCCEEEES-SSSEEEEEC--------SSEEEEEESSS
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc--CCCcEEEEec-CCCEEEEEc--------CCceEEEcccC
Confidence            45578888999887788899999999998877777  5667677765 466788887        36689998843

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.13  E-value=2.6  Score=34.57  Aligned_cols=80  Identities=11%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387           88 LLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (298)
Q Consensus        88 V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~  165 (298)
                      ...+++.+||++++.|+.  +.+.+||..+......................++..+++ +|........+.+.+||..+
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~-GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-GGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE-CCCCCSSSCCCCEEEEETTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeee-ccccccccccceeeeecCCC
Confidence            345678899999999875  458899988776533222211111123334445555544 44332222346799999988


Q ss_pred             CcE
Q 022387          166 SRC  168 (298)
Q Consensus       166 ~~~  168 (298)
                      .+.
T Consensus       157 ~~W  159 (387)
T d1k3ia3         157 KTW  159 (387)
T ss_dssp             TEE
T ss_pred             Cce
Confidence            764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.91  E-value=4  Score=34.39  Aligned_cols=96  Identities=10%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             ceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEee--
Q 022387          177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--  254 (298)
Q Consensus       177 ~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~--  254 (298)
                      .|..++|+.+.+++..++.+..++..............  .....+.+.+.. .++  ...+|.+.++.+.......+  
T Consensus        88 ~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~p~~-~~l--~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFE--KPVFQLKNVNNT-LVI--LNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECS--SCEEEEEECSSE-EEE--EETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCCEEEEEeCCCEEEEEeecccccccccccc--ccccceecCCce-eEE--EecCCCEEEEEeccCccccccC
Confidence            68889999999999988999999986654444433322  235566666643 333  35678888877765543211  


Q ss_pred             ----cccccceeEEEECCCCCEEEEEe
Q 022387          255 ----MAHDSRIACFALTQDGQLLATSS  277 (298)
Q Consensus       255 ----~~H~~~V~~l~fspdg~~lAt~S  277 (298)
                          ..-.+.+.+++|++.|+.++++.
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeC
Confidence                12246689999999998888874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=3.1  Score=32.87  Aligned_cols=199  Identities=7%  Similarity=-0.093  Sum_probs=111.5

Q ss_pred             CeEEEEEcCCCCEEEEEc-C-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387           87 TLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (298)
Q Consensus        87 ~V~~v~fs~dg~~lasgs-~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~  164 (298)
                      .+.+++|....+.|.-.. . +.|+..+++.......... .......+++.+-.+.+..+..      ..+.|.+.++.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p~~iAvD~~~~~lY~~d~------~~~~I~~~~~d  109 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-ccccccEEEEeccCCeEEEecc------CCCEEEEEecC
Confidence            577899998777666543 3 4466667765443322221 1245666777766666766653      34789999987


Q ss_pred             CCcEEEEeecC-CceEEEEEeC--CeEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387          165 QSRCIGELSFR-SEVRSVKLRR--DRIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (298)
Q Consensus       165 ~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~  237 (298)
                      .......+... .....+++++  ..+.....  +  .|.--++..... ..+-. ..-.....++.|+.+..|-.+-..
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~-~~~~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ-DNLGLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC-TTCSCEEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeee-ecccccceEEEeecCcEEEEEeCC
Confidence            65433223322 4567777765  34444432  2  344445533222 22221 111222344444333333323566


Q ss_pred             CceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          238 KGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       238 dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .+.|..-+++..... .+.+- .....|++. ++.++.|-...++ |...|..+|+.++.+
T Consensus       188 ~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~-I~~~~~~~g~~~~~~  245 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTF  245 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCE-EEEEECCCCccceEE
Confidence            678888887765443 33332 335688886 4556666656677 999999999877654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.18  E-value=6  Score=33.88  Aligned_cols=196  Identities=13%  Similarity=0.053  Sum_probs=108.9

Q ss_pred             EEEEcC---CCCEEEEEcC-C-eEEEEEcCCCceEEEEeeecCCceEEEEEecC--CCEEEEEeCCCCCCCCC-------
Q 022387           90 HISFNQ---DHGCFAAGTD-H-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL-------  155 (298)
Q Consensus        90 ~v~fs~---dg~~lasgs~-~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d-------  155 (298)
                      .++|.-   ||+||.+... + .+.+-|+++.+.....+..-......+.....  ..+++..+.-..+.-.|       
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            466664   9999888875 3 37788999888644444311223333343333  33433332111100011       


Q ss_pred             ----CeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-C-----------------------------------
Q 022387          156 ----NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-E-----------------------------------  193 (298)
Q Consensus       156 ----~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~-----------------------------------  193 (298)
                          +.+.++|..+.+...++......-.+.++++  .+++.+ +                                   
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                3467889998888777665544333444332  222221 0                                   


Q ss_pred             ---CeEEEEEcCC---CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc------------eEeec
Q 022387          194 ---QKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------TKFIM  255 (298)
Q Consensus       194 ---~~I~iwd~~~---~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~------------~~~~~  255 (298)
                         +.+.+.|.++   ...++.+.....|.++ .+  ++|+.+++++|--+..+.|.|++.-.            +..-.
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV-~v--SPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGC-NM--APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCE-EE--CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCce-EE--CCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence               2234445432   1233445555554433 44  45668888889999999999985210            10011


Q ss_pred             ccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (298)
Q Consensus       256 ~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~  289 (298)
                      ...-..-.-+|+..|.-..|---|.. |--|++.
T Consensus       326 elglgPLht~fd~~g~aytslfids~-v~kw~~~  358 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIE  358 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHH
T ss_pred             ccCcCccccccCCCceEEEEeeccce-EEEEecc
Confidence            11223455689999977777778888 8899975

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.95  E-value=9.5  Score=33.60  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       269 dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      .|.++..|+.||. +|-+|.++|++|.+|
T Consensus       474 agglVf~G~~dg~-l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         474 KGGLVWYATLDGY-LKALDNKDGKELWNF  501 (571)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             cCCEEEEECCCCe-EEEEECCCCcEEEEE
Confidence            4557777999999 999999999999886

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.87  E-value=7.4  Score=30.45  Aligned_cols=184  Identities=5%  Similarity=-0.121  Sum_probs=97.2

Q ss_pred             CCEEEEEcCCeEEEEEcCCCce-----EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387           97 HGCFAAGTDHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (298)
Q Consensus        97 g~~lasgs~~gi~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~  171 (298)
                      |++|.-+..+.|+-..++....     ...... +.+.+..+++....+.+..+..      ..+.|+..++........
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~-~~~~~~~ld~D~~~~~iywsd~------~~~~I~~~~l~g~~~~~v   73 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTI   73 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEE
T ss_pred             CCEEEEeCCCeEEEEECCCcccccccccccccc-CCCcEEEEEEEeCCCEEEEEEC------CCCeEEEEEcccCCcEEE
Confidence            5677777777777666654321     111111 1223444556666676766542      357788888766543333


Q ss_pred             eecC-CceEEEEEe--CCeEEEEEC--CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEe--cCCCceEEE
Q 022387          172 LSFR-SEVRSVKLR--RDRIIVVLE--QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCP--GLQKGQVRV  243 (298)
Q Consensus       172 ~~~~-~~v~~v~~~--~~~l~v~~~--~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~s--Gs~dg~v~i  243 (298)
                      +... ..+..++++  .+.+.++..  +.|.+.++..... ..+.. .......+++.+.  ..++..+  |...+.|.-
T Consensus        74 ~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~--~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEE
T ss_pred             EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecc--cCcEEEeecCCCCcEEEE
Confidence            3222 355666664  567776653  6899999865443 23332 2122233444443  3333322  222333433


Q ss_pred             EEcCCcceEe-ecccccceeEEEECCCCCEE-EEEeCCCCEEEEEECCCC
Q 022387          244 EHYASKRTKF-IMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDG  291 (298)
Q Consensus       244 ~~~~~~~~~~-~~~H~~~V~~l~fspdg~~l-At~S~Dgt~IrIWd~~tg  291 (298)
                      -+++...... ....-...+.|++.+.++.| .+-...++ |...|+..+
T Consensus       151 ~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~  199 (263)
T d1npea_         151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQP  199 (263)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEE
T ss_pred             ecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCC
Confidence            4444433232 22233567899998776555 55455666 888887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.32  E-value=14  Score=32.34  Aligned_cols=57  Identities=12%  Similarity=0.142  Sum_probs=36.7

Q ss_pred             ceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387          239 GQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG  297 (298)
Q Consensus       239 g~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~  297 (298)
                      |.+.-+|..+.++. ... +..+...=.++-.|.++..|+.||. +|-+|.++|++|.+|
T Consensus       438 G~l~A~D~~tGk~~W~~~-~~~~~~gg~l~TagglVF~G~~dg~-l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQF  495 (560)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred             cceEEEeCCCCeEeeecc-CCCCCCCceeEECCCEEEEECCCCc-EEEEECCCCcEeEEE
Confidence            55666777666543 221 1112221122334667778999999 999999999999886

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.77  E-value=11  Score=30.77  Aligned_cols=50  Identities=8%  Similarity=0.160  Sum_probs=32.1

Q ss_pred             EEEEcCCcceEeecccccceeEEEECCCCCEEEEEe-CCCCEEEEEECCCCc
Q 022387          242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGT  292 (298)
Q Consensus       242 ~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S-~Dgt~IrIWd~~tg~  292 (298)
                      .++..+.+....+...-...+-|+++||+++|..+. ..++ |++|++...+
T Consensus       189 ~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~~  239 (340)
T d1v04a_         189 FVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANW  239 (340)
T ss_dssp             EEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTS
T ss_pred             eEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCCc
Confidence            333333444444333445789999999998776664 4555 9999987543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.91  E-value=4.6  Score=32.90  Aligned_cols=69  Identities=12%  Similarity=0.035  Sum_probs=44.7

Q ss_pred             EeCCCCeEEEEecCCCceEEEEEcCCcceEeecc--cccceeEEEECCCCCEEEEEeCC------CCEEEEEECCCCc
Q 022387          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTK------GTLVRIFNTLDGT  292 (298)
Q Consensus       223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~--H~~~V~~l~fspdg~~lAt~S~D------gt~IrIWd~~tg~  292 (298)
                      ...+++.++++.|.....+.+||..+..-..+..  ....-.+++..+||++++.|+.+      .. +.+||..+.+
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~-v~~yd~~~~~  158 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKN-GEVYSPSSKT  158 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCC-EEEEETTTTE
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccce-eeeecCCCCc
Confidence            3445668887644455688889987664332211  11223456778899999999754      25 8899988764